Citrus Sinensis ID: 015537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mslrpnskadsrrnkykvavdadegrrrreDNMVEIRKNKREESLQKKRREglqnqqplandvnapgtakklenlpVMVAGVwsndsgvqyeCTTQFRKLLsiersppieevirsgvvprfVEFLLREDYPQLQFEAAWALtniasgtsehtkVVIDHGAVPIFVKLlyspsddvREQAVWALGniagdsprcrdlvlsqgglvpllaqlngqpklsmLRNATWTlsnfcrgkpqppfdqvspalpaLAHLihsnddevLTDACWALsylsdgtnDKIQAVIEAGVfprlaeflmhpspsvlipalrtvgnivtgddmqtQCVIEYQALPCLLNLLsgnykksikkeacwtvsnitagnrEQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE
Flexible Loop (DISEMBL)
mslrpnskadsrrnkykvavdadegrrrrednmveirknkreeslqkkrreglqnqqplandvnapgtakKLENLPVMVAGVWSNDSGVQYECTTQFRKLlsiersppieevirsgvVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE
Low Complexity Region (SEG)
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAfffmflhfffGAIIYKLAIWLCLVTCCE
Disordered region (IsUnstruct)
***********************************************************************LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK****FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC*
Disordered Region (DISOPRED)
**************************************************************************LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE
Disordered Region (DISEMBL)
****************KVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE
Disordered Region (DISPRO)
**********SRR***KVAVDADEGRRRREDNMVEIRKNKREESLQKK*******************T*KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.933	0.718	0.778	1e-175
O22478	527	Importin subunit alpha OS	N/A	no	0.967	0.743	0.740	1e-171
Q96321	532	Importin subunit alpha-1	yes	no	0.933	0.710	0.765	1e-170
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.930	0.705	0.753	1e-169
O04294	531	Importin subunit alpha-2	no	no	0.911	0.694	0.685	1e-152
Q76P29	516	Importin subunit alpha-B	yes	no	0.938	0.736	0.577	1e-123
O35345	536	Importin subunit alpha-7	yes	no	0.851	0.643	0.566	1e-103
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.851	0.643	0.563	1e-102
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.851	0.643	0.563	1e-102
O60684	536	Importin subunit alpha-7	yes	no	0.851	0.643	0.563	1e-102

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  614 bits (1583), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 295/379 (77%), Positives = 332/379 (87%), Gaps = 1/379 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 61  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 120 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIVAFF 379
           +QIQ +++      +V   
Sbjct: 360 DQIQAVINAGIIGPLVNLL 378

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  600 bits (1548), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 294/397 (74%), Positives = 331/397 (83%), Gaps = 5/397 (1%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPNS+ ++RR++YKVAVDA+EGRRRREDNMVEIRKNKREE+L KKRREGL   Q   
Sbjct: 1   MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +        KKLE LP ++AGVWS+DS +Q ECTTQFRKLLSIER+PPIEEVI+SGVVPR
Sbjct: 61  STAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL R+DYPQLQFEAAWALTNIASGTSE+TKVVID+G+VPIF++LL SPSDDVREQAV
Sbjct: 121 FVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGNIAGDSP+ RDLVL  G LV LLAQ N Q KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 181 WALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
              ALP L  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV  RL E L+H SPS
Sbjct: 241 TKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQ +I++ ALPCL+NLL+ NYKKSIKKEACWT+SNITAGNR
Sbjct: 301 VLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNR 360

Query: 361 EQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIW 397
            QIQ+++      II    ++  +  F   I K A W
Sbjct: 361 NQIQIVIEA---GIIAPLVYLLQNAEFE--IKKEAAW 392

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  597 bits (1539), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 290/379 (76%), Positives = 325/379 (85%), Gaps = 1/379 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREG+Q  Q   
Sbjct: 1   MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +  +A    KKL++L  MVAGVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +GVVPR
Sbjct: 61  S-ASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL +EDYP +QFEAAWALTNIASGTS+HTKVVIDH AVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLL QLN   KLSMLRNATWTLSNFCRGKPQP FDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  LIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+L E L+H SPS
Sbjct: 240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIVAFF 379
           +QIQ ++  +  S +V+  
Sbjct: 360 DQIQTVVEANLISPLVSLL 378

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  594 bits (1532), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 291/386 (75%), Positives = 327/386 (84%), Gaps = 9/386 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL------- 53
           MSLRP+ +A+ RR++YKVAVDADEGRRRREDNMVEIRK++REESL KKRR+GL       
Sbjct: 1   MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60

Query: 54  QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI 113
               PL    ++    +KLE LP MV  V S+DS VQ E TTQFRKLLSIERSPPIEEVI
Sbjct: 61  AAASPLL--AHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVI 118

Query: 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
            +GVVPRF+ FL REDYPQLQFEAAWALTNIASGTS++TKVV++ GAVPIFVKLL SPS+
Sbjct: 119 NTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSE 178

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           DVREQAVWALGN+AGDSP+CRDLVL+ GGL PLL QLN   KLSMLRNATWTLSNFCRGK
Sbjct: 179 DVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGK 238

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
           PQP F+QV PAL AL  LIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GVFPRL E 
Sbjct: 239 PQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVEL 298

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           LMHPS SVLIPALRTVGNIVTGDDMQTQCVI++QALPCLLNLL+ N+KKSIKKEACWT+S
Sbjct: 299 LMHPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTIS 358

Query: 354 NITAGNREQIQVIMHVHAFSIIVAFF 379
           NITAGNREQIQ +++ +  + +V   
Sbjct: 359 NITAGNREQIQAVINANIIAPLVHLL 384

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  538 bits (1387), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/385 (68%), Positives = 309/385 (80%), Gaps = 16/385 (4%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL------- 53
           MSLRP++K + RRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKR           
Sbjct: 1   MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query: 54  -QNQQPLANDVNAPGTAKKL-ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE 111
            Q +Q L+       +A +L +NLP MVAG+WS DS  Q E T   RKLLSIE++PPI E
Sbjct: 61  GQTEQDLS-------SANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINE 113

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
           V++SGVVPR V+FL R+D+P+LQFEAAWALTNIASGTSE+T V+I+ GAVPIF++LL S 
Sbjct: 114 VVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSA 173

Query: 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           S+DVREQAVWALGN+AGDSP+CRDLVLS G + PLL+Q N   KLSMLRNATWTLSNFCR
Sbjct: 174 SEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCR 233

Query: 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291
           GKP P F+Q  PALP L  L+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL 
Sbjct: 234 GKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLI 293

Query: 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351
           + L H SPSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT
Sbjct: 294 QLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWT 353

Query: 352 VSNITAGNREQIQVIMHVHAFSIIV 376
           +SNITAGN +QIQ ++       +V
Sbjct: 354 ISNITAGNADQIQAVIDAGIIQSLV 378

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  443 bits (1139), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/395 (57%), Positives = 292/395 (73%), Gaps = 15/395 (3%)

Query: 7   SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND--VN 64
           SK ++R+++YK ++D+DE RR+RE+  + IRKNKREESL KKR + +    P+  D  +N
Sbjct: 4   SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLIN 63

Query: 65  APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
                ++LE LP +VA + S +  +  + TT FRKLLSIE+SPPIEEVI++G+VPR V+F
Sbjct: 64  -----QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKF 118

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           L  +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL SP DDVREQAVWALG
Sbjct: 119 LYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQVS 242
           NIAGDS  CRDLVLS   L PLL+ L      K+SM+RNATWTLSNFCRGKPQPPF+ V 
Sbjct: 179 NIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVR 238

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
            +LP LA LI+  D+EVL DACWALSYLSDG+N++IQ VI+A V  ++ E L HP+ +V 
Sbjct: 239 ASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQ 298

Query: 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
            PALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ Q
Sbjct: 299 TPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQ 357

Query: 363 IQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIW 397
           IQ ++  +   II +  ++  +  F   I K A W
Sbjct: 358 IQQVIDAN---IIPSLVYLLANAEFE--IQKEAAW 387

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  376 bits (965), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/353 (56%), Positives = 249/353 (70%), Gaps = 8/353 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQ-----PLANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF 379
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQ ++  + F +++   
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEIL 387

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/353 (56%), Positives = 248/353 (70%), Gaps = 8/353 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQ-----PLANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+D  
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF 379
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQ ++  + F +++   
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEIL 387

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/353 (56%), Positives = 248/353 (70%), Gaps = 8/353 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQ-----PLANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF 379
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQ ++  + F +++   
Sbjct: 336 SALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEIL 387

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/353 (56%), Positives = 248/353 (70%), Gaps = 8/353 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQ-----PLANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF 379
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQ ++  + F +++   
Sbjct: 336 SALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEIL 387

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
255542844	531	importin alpha, putative [Ricinus commun	0.933	0.711	0.802	1e-179
224123916	529	predicted protein [Populus trichocarpa]	0.933	0.714	0.802	1e-179
224122988	529	predicted protein [Populus trichocarpa]	0.933	0.714	0.796	1e-179
224101863	383	predicted protein [Populus trichocarpa]	0.935	0.989	0.795	1e-178
225450645	527	PREDICTED: importin subunit alpha-1 isof	0.933	0.717	0.794	1e-178
356564581	530	PREDICTED: importin subunit alpha-1-like	0.883	0.675	0.799	1e-177
449454044	529	PREDICTED: importin subunit alpha-1-like	0.933	0.714	0.802	1e-177
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.883	0.675	0.799	1e-177
356535026	532	PREDICTED: importin subunit alpha-1-like	0.933	0.710	0.797	1e-177
449490863	529	PREDICTED: importin subunit alpha-1-like	0.933	0.714	0.802	1e-177

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/379 (80%), Positives = 339/379 (89%), Gaps = 1/379 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  QP+ 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQPMP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVWS+DS +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  ASLHSSAVEKKLEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+T+VVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 120 FVEFLMREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIVAFF 379
           EQIQ ++  +    +V   
Sbjct: 360 EQIQAVIEANIIGPLVHLL 378

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123916|ref|XP_002330241.1| predicted protein [Populus trichocarpa] gi|222871697|gb|EEF08828.1| predicted protein [Populus trichocarpa]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/379 (80%), Positives = 337/379 (88%), Gaps = 1/379 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDADEGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q + 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQAIP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVWS D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  AALHSSAAEKKLEHLPSMVAGVWSEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +Q+LPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIVAFF 379
           EQIQ ++  +    +V   
Sbjct: 360 EQIQAVIEANLIGPLVHLL 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122988|ref|XP_002318966.1| predicted protein [Populus trichocarpa] gi|222857342|gb|EEE94889.1| predicted protein [Populus trichocarpa]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 302/379 (79%), Positives = 337/379 (88%), Gaps = 1/379 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q + 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQAMP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVW+ D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  ASLHSSAAEKKLEHLPSMVAGVWTEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGNGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHS+D+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSDDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLANNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIVAFF 379
           EQIQ ++  +    +V   
Sbjct: 360 EQIQAVIEANIIGPLVNLL 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101863|ref|XP_002334234.1| predicted protein [Populus trichocarpa] gi|222870218|gb|EEF07349.1| predicted protein [Populus trichocarpa]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 304/382 (79%), Positives = 336/382 (87%), Gaps = 3/382 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ D RRN+YKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL  QQ  A
Sbjct: 1   MSLRPSTRTDVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLLAQQFPA 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MV+GVWS+DS +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 61  AVLSSSNMEKKLESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVE L+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 121 FVELLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F++
Sbjct: 181 WALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFEK 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  L+HS D+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 241 VRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VL+PALRTVGNIVTGDDMQTQC+I   ALPCLL+LL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 301 VLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNK 360

Query: 361 EQIQVIMH---VHAFSIIVAFF 379
           EQIQV MH    H  S +  F 
Sbjct: 361 EQIQVSMHALEAHVLSFVRIFL 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450645|ref|XP_002282816.1| PREDICTED: importin subunit alpha-1 isoform 1 [Vitis vinifera] gi|296089748|emb|CBI39567.3| unnamed protein product [Vitis vinifera]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 301/379 (79%), Positives = 335/379 (88%), Gaps = 1/379 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKV+VDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q L 
Sbjct: 1   MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQTLP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE LP MVAGVW++DS +Q E TTQFRKLLSIER PPIEEVI+SGVVPR
Sbjct: 60  ASIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTS++TKVVIDHGAVP+FVKLL SPSDDVREQAV
Sbjct: 120 FVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPAL  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 TKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIVAFF 379
           EQIQ ++  +    +V   
Sbjct: 360 EQIQAVIEANIIGPLVHLL 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/379 (79%), Positives = 334/379 (88%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN++ + RRN+YKVAVDADEGRRRREDNMVEIRK+KREESL KKRREGLQ QQ   
Sbjct: 1   MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +      KKLE+LP MVAGVWS+D+ +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 61  APLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 121 FVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVLSQG LVPLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF+Q
Sbjct: 181 WALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  L+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGV  RL + L+HPSPS
Sbjct: 241 VRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I + ALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 301 VLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 360

Query: 361 EQIQVIMHVHAFSIIVAFF 379
           EQIQ ++     + +V   
Sbjct: 361 EQIQTVIEAGLVAPLVNLL 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454044|ref|XP_004144766.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 304/379 (80%), Positives = 334/379 (88%), Gaps = 1/379 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN +A+ RRN+YKVAVDADEGRRRREDNMVEIRKN+REESLQKKRREGLQ QQ L 
Sbjct: 1   MSLRPNERAEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQAQQ-LQ 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
              ++    KKLE LP MVAG+WS+D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  TSTHSSVVEKKLEYLPSMVAGIWSDDGSLQLESTTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 120 FVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDS RCRDLVL  G LVPLLAQLN Q KLSMLRNATWTLSNFCRGKPQP FD 
Sbjct: 180 WALGNVAGDSSRCRDLVLGHGALVPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPAFDL 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E LMHP+PS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPAPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQ +I++ ALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDLQTQVIIQHNALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIVAFF 379
            QIQ ++  +  + +V   
Sbjct: 360 AQIQAVIDANIVAPLVHLL 378

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/379 (79%), Positives = 332/379 (87%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN++ + RRN+YKVAVDADEGRRRREDNMV IRK+KREESL KKRREGLQ  Q L 
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVXIRKSKREESLLKKRREGLQAHQQLP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +      K LE+LP MVAGVWSND+ +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 61  APLQNSTVDKNLESLPAMVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 121 FVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVLS G LVPLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF+Q
Sbjct: 181 WALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  L+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL + LMHPSPS
Sbjct: 241 VRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLMQLLMHPSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I + ALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 301 VLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 360

Query: 361 EQIQVIMHVHAFSIIVAFF 379
           EQIQ ++     + +V   
Sbjct: 361 EQIQTVIEAGLVAPLVNLL 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 304/381 (79%), Positives = 337/381 (88%), Gaps = 3/381 (0%)

Query: 1   MSLRP--NSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RP  NS+ + RRN+YKVAVDA+EGRRRRED MVEIRKN+REESLQKKRREGLQ QQ 
Sbjct: 1   MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           +   V++    KKLE+LP MV GVW++D+ +Q E TTQFRKLLSIERSPPIEEVI++GVV
Sbjct: 60  MPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDDMQTQ +I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQVIMHVHAFSIIVAFF 379
           N++QIQ ++  +  + +V   
Sbjct: 360 NKQQIQAVIEANLIAPLVNLL 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490863|ref|XP_004158728.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 304/379 (80%), Positives = 334/379 (88%), Gaps = 1/379 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN +A+ RRN+YKVAVDADEGRRRREDNMVEIRKN+REESLQKKRREGLQ QQ L 
Sbjct: 1   MSLRPNERAEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQAQQ-LQ 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
              ++    KKLE LP MVAG+WS+D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  TSTHSSVVEKKLEYLPSMVAGIWSDDGSLQLESTTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 120 FVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDS RCRDLVL  G LVPLLAQLN Q KLSMLRNATWTLSNFCRGKPQP FD 
Sbjct: 180 WALGNVAGDSSRCRDLVLGHGALVPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPAFDL 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E LMHP+PS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPAPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQ +I++ ALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDLQTQVIIQHNALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIVAFF 379
            QIQ ++  +  + +V   
Sbjct: 360 AQIQAVIDANIVAPLVHLL 378

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.903	0.684	0.805	1.7e-155
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.928	0.706	0.769	3.6e-153
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.906	0.682	0.731	3.4e-141
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.906	0.691	0.704	5.1e-138
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.903	0.679	0.7	2.6e-134
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.916	0.714	0.603	3.3e-118
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.898	0.705	0.593	1.6e-111
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.846	0.649	0.643	4.2e-111
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.879	0.646	0.628	1.1e-110
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.879	0.643	0.616	2.7e-107

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
 Identities = 298/370 (80%), Positives = 326/370 (88%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ-NQQP- 58
             MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESLQKKRREGLQ NQ P 
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60

Query:    59 -LANDVNAPGTA-KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
                + V A  T  KKLE+LP MV GVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +G
Sbjct:    61 FAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAG 120

Query:   117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
             VVPRFVEFL REDYPQLQFEAAWALTNIASGTSE+TKVVI+HGAVPIFV+LL S SDDVR
Sbjct:   121 VVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVR 180

Query:   177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
             EQAVWALGN+AGDSPRCRDLVL QG L+PLL+QLN   KLSMLRNATWTLSNFCRGKPQP
Sbjct:   181 EQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQP 240

Query:   237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             PFDQV PALPAL  LIHS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRL E L H
Sbjct:   241 PFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQH 300

Query:   297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
              SPSVLIPALR++GNIVTGDD+QTQCVI + AL  LL+LL+ N+KKSIKKEACWT+SNIT
Sbjct:   301 QSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNIT 360

Query:   357 AGNREQIQVI 366
             AGNR+QIQ +
Sbjct:   361 AGNRDQIQAV 370

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
 Identities = 290/377 (76%), Positives = 325/377 (86%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
             MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREG+Q  Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query:    61 NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +  +A    KKL++L  MVAGVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +GVVPR
Sbjct:    61 S-ASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query:   121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
             FVEFL +EDYP +QFEAAWALTNIASGTS+HTKVVIDH AVPIFV+LL SPSDDVREQAV
Sbjct:   120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query:   181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
             WALGN+AGDSPRCRDLVL  G L+PLL QLN   KLSMLRNATWTLSNFCRGKPQP FDQ
Sbjct:   180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query:   241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             V PALPAL  LIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+L E L+H SPS
Sbjct:   240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query:   301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
             VLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct:   300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query:   361 EQIQVIMHVHAFSIIVA 377
             +QIQ ++  +  S +V+
Sbjct:   360 DQIQTVVEANLISPLVS 376

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
 Identities = 273/373 (73%), Positives = 311/373 (83%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG--LQNQQP 58
             MSLRP+++A+ R+  YK  VDADE RRRREDN+VEIRKNKRE+SL KKRREG  LQ Q P
Sbjct:     1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query:    59 LANDVNAPGTA----KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR 114
             L   ++ P TA    K+LE +P+MV GV+S+D   Q E TTQFRKLLSIERSPPI+EVI+
Sbjct:    61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query:   115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
             +GV+PRFVEFL R D+PQLQFEAAWALTN+ASGTS+HT+VVI+ GAVPIFVKLL S SDD
Sbjct:   121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query:   175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
             VREQAVWALGN+AGDSP CR+LVL+ G L PLLAQLN   KLSMLRNATWTLSNFCRGKP
Sbjct:   181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query:   235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
               PF+QV PALP L  LI+ ND+EVLTDACWALSYLSDG NDKIQAVIEAGV PRL E L
Sbjct:   241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query:   295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
              H SP+VLIPALRTVGNIVTGDD QTQ +IE   LP L NLL+ N+KKSIKKEACWT+SN
Sbjct:   301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query:   355 ITAGNREQIQVIM 367
             ITAGN+ QI+ ++
Sbjct:   361 ITAGNKLQIEAVV 373

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1351 (480.6 bits), Expect = 5.1e-138, P = 5.1e-138
 Identities = 260/369 (70%), Positives = 303/369 (82%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR-REGLQNQQPL 59
             MSLRP++K + RRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKR    +      
Sbjct:     1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query:    60 ANDVNAPGTAKKL-ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
                     +A +L +NLP MVAG+WS DS  Q E T   RKLLSIE++PPI EV++SGVV
Sbjct:    61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             PR V+FL R+D+P+LQFEAAWALTNIASGTSE+T V+I+ GAVPIF++LL S S+DVREQ
Sbjct:   121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
             AVWALGN+AGDSP+CRDLVLS G + PLL+Q N   KLSMLRNATWTLSNFCRGKP P F
Sbjct:   181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             +Q  PALP L  L+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL + L H S
Sbjct:   241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             PSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT+SNITAG
Sbjct:   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query:   359 NREQIQVIM 367
             N +QIQ ++
Sbjct:   361 NADQIQAVI 369

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
 Identities = 259/370 (70%), Positives = 301/370 (81%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQ---Q 57
             MS +P++K + RRN+YKV+VDADEGRRRREDNMVEIRKNKREE+LQKKRREG       Q
Sbjct:     1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60

Query:    58 PLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
             P  +  ++  T  +LEN+  M+AGV S D  +Q E T  FR+LLSIER+PPI EV++SGV
Sbjct:    61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120

Query:   118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
             VP  V+FL R+D+ QLQFEAAWALTNIASGTSE+T+V+ID GAVP+FVKLL S S++VRE
Sbjct:   121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180

Query:   178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
             QAVWALGN+AGDSP+CRD VLS   ++ LLAQ +   KLSMLRNATWTLSNFCRGKPQP 
Sbjct:   181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query:   238 FDQ-VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             F+Q    ALPAL  L+HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRL + L H
Sbjct:   241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
             PSPSVLIPALRT+GNIVTGDD+QTQ VI  QALP LLNLL   YKKSIKKEACWT+SNIT
Sbjct:   301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360

Query:   357 AGNREQIQVI 366
             AGN  QIQ +
Sbjct:   361 AGNTSQIQEV 370

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 228/378 (60%), Positives = 287/378 (75%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL--QNQQP 58
             MSLRP++K + RR +YKV+VDA+EGRRRRED +VEIRK+KR E+L KKRR  +   + + 
Sbjct:     1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVLPPDYKL 60

Query:    59 LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
             ++ND   P   + L  +  M+ GV+S+D  +Q E TT+FR +LS +RSPP + VI+SGVV
Sbjct:    61 ISND---P--FESLLEIANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVV 115

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             PRFVEFL ++D P+LQFEAAWALTNIASG SEHTKVVIDHG VP+FV+LL SP DDVREQ
Sbjct:   116 PRFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQ 175

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
             A+W LGN+AGDS +CRD VL+ G  +PLL QLN    LS+LRNATWTLSNF RGKP PPF
Sbjct:   176 AIWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPF 235

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             D V   LP L  L++S+D++VL DACWALS LSD +N+ IQ+VIEAGV PRL E L H S
Sbjct:   236 DLVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHAS 295

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             P VL+PALR +GNIV+G+  QT CVI    LP L +LL+ N+ + I++EACWT+SNITAG
Sbjct:   296 PVVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAG 355

Query:   359 NREQIQVIMHVHAFSIIV 376
               EQIQ ++  +    +V
Sbjct:   356 LEEQIQSVIDANLIPSLV 373

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
 Identities = 222/374 (59%), Positives = 283/374 (75%)

Query:     7 SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND--VN 64
             SK ++R+++YK ++D+DE RR+RE+  + IRKNKREESL KKR + +    P+  D  +N
Sbjct:     4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLIN 63

Query:    65 APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
                  ++LE LP +VA + S +  +  + TT FRKLLSIE+SPPIEEVI++G+VPR V+F
Sbjct:    64 -----QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKF 118

Query:   125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
             L  +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL SP DDVREQAVWALG
Sbjct:   119 LYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178

Query:   185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQVS 242
             NIAGDS  CRDLVLS   L PLL+ L      K+SM+RNATWTLSNFCRGKPQPPF+ V 
Sbjct:   179 NIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVR 238

Query:   243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
              +LP LA LI+  D+EVL DACWALSYLSDG+N++IQ VI+A V  ++ E L HP+ +V 
Sbjct:   239 ASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQ 298

Query:   303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
              PALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ Q
Sbjct:   299 TPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQ 357

Query:   363 IQVIMHVHAFSIIV 376
             IQ ++  +    +V
Sbjct:   358 IQQVIDANIIPSLV 371

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 229/356 (64%), Positives = 269/356 (75%)

Query:    12 RRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKK 71
             RR+ YK  VD   GRRRRED+MVEIRK KREESL KKRRE L +  P A+ ++     +K
Sbjct:    10 RRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALPHS-PSADSLD-----QK 63

Query:    72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDY 130
             L      ++ +WS++  +  E TTQ R LL  E  +  +EEVI++G+VPRFVEFL  +D 
Sbjct:    64 L------ISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDS 117

Query:   131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
             PQLQFEAAWALTNIASGTSE+T+VVIDHGAV I V+LL SP D VREQ VWALGNI+GDS
Sbjct:   118 PQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDS 177

Query:   191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
             PRCRD+VL    L  LL QLN   KLSML NA WTLSN CRGKPQPPFDQVS ALPALA 
Sbjct:   178 PRCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQ 237

Query:   251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
             LI  +D E+L   CWAL YLSDG+N+KIQAVIEA V  RL    +H SPSV+ PALRT+G
Sbjct:   238 LIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIG 297

Query:   311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVI 366
             NIVTG+D QTQ +I+ QALPCL+NLL G+Y K+I+KEACWTVSNITAG + QIQ +
Sbjct:   298 NIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAV 353

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 232/369 (62%), Positives = 274/369 (74%)

Query:    10 DSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAN------ 61
             + RR ++K       +E RRRRE+  VEIRK KREE+L K+R  G    +P A+      
Sbjct:     8 EHRRTQFKAKNTFKPEELRRRREEQQVEIRKAKREENLAKRRGIGTGADRPGASLGAAPD 67

Query:    62 --DVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVP 119
               D  AP  ++  E+LP MV GV+S     Q + TT+FRKLLS ER+PPIEEVI++GVV 
Sbjct:    68 SDDDTAPTESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVS 127

Query:   120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQA 179
             RFVEFL R  +  +QFEAAWALTNIASG++  T+VVI+ GAVPIFV+LL SP  DVREQA
Sbjct:   128 RFVEFL-RSPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQA 186

Query:   180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF 238
             VWALGNIAGDSP+CRD VLS G L PLL  L    KLSMLRNATWTLSNFCRGK PQP +
Sbjct:   187 VWALGNIAGDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDW 246

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
               ++PALP LA L++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+  RL E LMH S
Sbjct:   247 TTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHAS 306

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
              SV  PALR+VGNIVTGDD+QTQ +I   ALPCLL+LL  N K  I+KEACWT+SNITAG
Sbjct:   307 TSVQTPALRSVGNIVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAG 365

Query:   359 NREQIQVIM 367
             N  QIQ ++
Sbjct:   366 NSAQIQSVV 374

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
 Identities = 228/370 (61%), Positives = 271/370 (73%)

Query:    10 DSRRNKYKVAVD--ADEGRRRREDNMVEIRKNKREESLQKKR----REG---LQNQQPLA 60
             + RR +YK       DE RRRRE+  VEIRK KREE+L K+R    R+G   +      A
Sbjct:     8 EHRRTQYKARNQFRPDELRRRREEQQVEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAA 67

Query:    61 -NDVNAPGTAKKLE-NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
              +D  A     +L   LP MV GV+S+    Q + TT+FRKLLS ER+PPIE VI +GVV
Sbjct:    68 ESDDEASAIESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVV 127

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
              RFVEFL R  +  +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV+LL SP  DVREQ
Sbjct:   128 SRFVEFL-RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQ 186

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237
             AVWALGNIAGDSP+CRD VL+ G L PLL  +N   K+SMLRNATWTLSNFCRGK PQP 
Sbjct:   187 AVWALGNIAGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPD 246

Query:   238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
             ++ ++PALP LA LI+  DDEVL DACWA+SYLSDG N+KIQAVIEAG+  RL E LMH 
Sbjct:   247 WNTIAPALPVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHA 306

Query:   298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
             S SV  PALR+VGNIVTGDD+QTQ +I   ALP LL+LLS   K  I+KEACWT+SNITA
Sbjct:   307 STSVQTPALRSVGNIVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITA 365

Query:   358 GNREQIQVIM 367
             GN  QIQ ++
Sbjct:   366 GNSSQIQSVI 375

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5665	0.8518	0.6436	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5637	0.8518	0.6436	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5240	0.8938	0.6678	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.7651	0.9333	0.7105	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5382	0.8765	0.6586	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5772	0.9382	0.7364	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7405	0.9679	0.7438	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5637	0.8518	0.6436	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5637	0.8518	0.6436	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7783	0.9333	0.7186	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-152
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-37
pfam01749	97	pfam01749, IBB, Importin beta binding domain	2e-32
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-32
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-15
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-11
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-11
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	4e-10
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	2e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-08
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	7e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	5e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-05
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	2e-04
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.001
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.002
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.003
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.003
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.003
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.004

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  441 bits (1135), Expect = e-152
 Identities = 206/369 (55%), Positives = 248/369 (67%), Gaps = 5/369 (1%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
            + R   +A     K K    ADE RRRRE+  VE+RK KREE L K+R   L +    A
Sbjct: 1   STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRR--NLADVSEEA 58

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
                P   +    LP +   ++S+D   Q +   +FRKLLS E SPPI+ VI +GVVPR
Sbjct: 59  ESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPR 118

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEF+       LQFEAAWALTNIASGT++ TKVV+D GAVP+F++LL S  DDVREQAV
Sbjct: 119 FVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAV 178

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK-PQPPF 238
           WALGNIAGDS  CRD VL  G L PLL  L      +SMLRNATWTLSN CRGK P P +
Sbjct: 179 WALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             +S ALP LA LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+  RL E L H S
Sbjct: 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES 298

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             +  PALR+VGNIVTG D QTQ +I   AL    +LLS + K++I+KEACWT+SNITAG
Sbjct: 299 AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAG 357

Query: 359 NREQIQVIM 367
           N EQIQ ++
Sbjct: 358 NTEQIQAVI 366

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  130 bits (328), Expect = 7e-37
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
           E VI++G +P  V  LL      +Q EAAWAL+N+++G +++ + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVS-LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           S  ++V + A+WAL N+A      + +VL  GG VP L  L       + +NAT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 230 CR 231
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score =  117 bits (295), Expect = 2e-32
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 4  RPNSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND 62
             +K + RR  YK    DA+E RRRRE+  VE+RKNKREE L K+R  GL  +     +
Sbjct: 1  ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60

Query: 63 VNAPGTA---KKLENLPVMVAGVWSNDSGVQYECTTQ 96
              G++   +    LPVMV GV S+D   Q   T  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  117 bits (295), Expect = 4e-32
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           +  LPAL  L+ S+D+ V  +A WALS LS G ND IQAV+EAG  P L + L      V
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           +  AL  + N+  G +     V+E   +P L+NLL  +  + I+K A   +SN+ +
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
           S+D  VQ E       L S   +  I+ V+ +G +P  V+ L  ED  ++   A WAL N
Sbjct: 18  SSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRN 75

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
           +A+G  ++  +V++ G VP  V LL S ++D+++ A  AL N+A
Sbjct: 76  LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338
           +AVI+AG  P L   L     +V   A   + N+  G++   Q V+E   LP L+ LL  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 339 NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVA 377
              + + K A W + N+ AG  +   +++       +V 
Sbjct: 61  E-DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 57.8 bits (141), Expect = 2e-11
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
           + E+ + VI+ GAVP  V+LL SP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 57.4 bits (140), Expect = 4e-11
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
             E+ + V+D G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 61.1 bits (148), Expect = 4e-10
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
           +I  G +      LL      ++ EA W ++NI +G +E  + VID   +P  + LL S 
Sbjct: 323 IINCGALK-AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA 381

Query: 172 SDDVREQAVWALGNIAGDSPRCRDLV---LSQGGLVPLLAQLNGQP 214
              ++++A WA+ N         D++   +SQG + PL   L+   
Sbjct: 382 EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD 427

Length = 526

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
            +++  AA AL  +A G  E  +  +    +P  + LL    D+VRE A WALG I
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.2 bits (116), Expect = 5e-08
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 106 SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
               + VI +G VP  V+ LL     ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQ-LLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.2 bits (116), Expect = 5e-08
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 105 RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
                + V+ +G +P  VE LL+ +  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVE-LLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +   +E LL +  P+++  AA AL  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 178 QAVWALGNIAGDS 190
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
           + +  QAVIEAG  P L + L  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
                Q VIE  A+P L+ LLS    + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           + A+P L  L+ S D+EV  +A WALS L+ 
Sbjct: 11  AGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.0 bits (100), Expect = 8e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
            ++  QAV++AG  P L E L      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.6 bits (99), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSD 272
            LPAL  L+ S D+EV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           DD   Q V++   LP L+ LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           VRE A  ALG +AG  P      + +  L+P L  L       +   A W L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           SP  +  V+  G + PL+  L+  P   +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLS-SPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 40/195 (20%), Positives = 62/195 (31%), Gaps = 37/195 (18%)

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
            +  LL ++   ++  AA AL  + S             AVP+  +LL      VR+ A 
Sbjct: 47  ELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAA 95

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
            ALG +    P           + PL+  L       +   A   L      +       
Sbjct: 96  DALGEL--GDPEA---------VPPLVELLENDENEGVRAAAARAL-GKLGDE-----RA 138

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---FPRLAEFLMHP 297
           + P L AL      +    L  A   +   +       +A+ E G     P L E L   
Sbjct: 139 LDPLLEALQDEDSGSAAAALDAALLDVRAAA------AEALGELGDPEAIPLLIELLEDE 192

Query: 298 SPSVLIPALRTVGNI 312
              V   A   +G +
Sbjct: 193 DADVRRAAASALGQL 207

Length = 335

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 43/138 (31%)

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           Q    LP L   + S+D E    A +     LS  T+  IQ VI+AGV PR  EF+    
Sbjct: 68  QFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ 127

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             +L                                          + EA W ++NI +G
Sbjct: 128 RDML------------------------------------------QFEAAWALTNIASG 145

Query: 359 NREQIQVIMHVHAFSIIV 376
             +Q +V++   A  + +
Sbjct: 146 TTQQTKVVVDAGAVPLFI 163

Length = 526

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIA 187
           +P+ ++LL  P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
           + E+     +P  +E LL++  P+++  AA AL  +            D  A+P  ++LL
Sbjct: 24  LGELGDPEALPALLE-LLKDPDPEVRRAAAEALGKLG-----------DPEALPALLELL 71

Query: 169 YSPSDD-VREQAVWALG 184
               D  VR  A  AL 
Sbjct: 72  QDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 39/155 (25%), Positives = 56/155 (36%), Gaps = 18/155 (11%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWAL 183
           LL       Q  AA  L  +          V+D GAV   +KLL   ++  VR +A  AL
Sbjct: 197 LLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256

Query: 184 GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM--------LRNATWTLSNFCRGKPQ 235
             ++  S   +  +   GG+  L+       K  M          NA   L+N C G   
Sbjct: 257 EALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG--- 313

Query: 236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSY 269
                +S  +  L  L  S      + D   AL+Y
Sbjct: 314 -----MSALILYLGELSESPRSPAPIADTLGALAY 343

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
           I +V+ +G V + ++ L + +   ++ EAA AL  ++S + E  + + D G +P  +   
Sbjct: 224 ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINAT 283

Query: 169 YSPSDDV---------REQAVWALGNIAG 188
            +PS +          +E A+ AL NI G
Sbjct: 284 VAPSKEFMQGEFAQALQENAMGALANICG 312

Length = 2102

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270
             A   L     G P+     V   LPAL  L+  +DDEV   A WAL  +
Sbjct: 5   EAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.89
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.88
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.79
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.75
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.73
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.73
PRK09687	280	putative lyase; Provisional	99.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.69
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.69
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.68
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.66
PRK09687	280	putative lyase; Provisional	99.66
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.66
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.63
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.62
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.61
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.6
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.55
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.51
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.51
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.5
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.49
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.47
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.45
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.45
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.38
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.37
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.37
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.35
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.33
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.32
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.31
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.28
PTZ00429	746	beta-adaptin; Provisional	99.28
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.25
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.25
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.24
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.24
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.23
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.22
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.2
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.17
PTZ00429	746	beta-adaptin; Provisional	99.17
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.09
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.08
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.07
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.05
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.03
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.92
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.92
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.79
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.76
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.73
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.71
TIGR02270	410	conserved hypothetical protein. Members are found	98.65
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.65
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.58
COG5369	743	Uncharacterized conserved protein [Function unknow	98.58
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.55
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.54
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.52
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.5
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.49
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.49
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.45
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.45
TIGR02270	410	conserved hypothetical protein. Members are found	98.44
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.44
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.44
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.42
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.42
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.41
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.4
COG5369	743	Uncharacterized conserved protein [Function unknow	98.39
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.38
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.38
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.38
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.37
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.37
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.35
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.34
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.31
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.29
PF05536	543	Neurochondrin: Neurochondrin	98.29
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.28
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.27
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.25
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.24
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.24
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.23
PF05536	543	Neurochondrin: Neurochondrin	98.18
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.15
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.13
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.11
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.09
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.08
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.06
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.03
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.02
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.93
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.92
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.89
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.87
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.85
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.85
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.84
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.82
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.81
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.81
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.81
KOG0567	289	consensus HEAT repeat-containing protein [General	97.8
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.76
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.74
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.68
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.68
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.62
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.57
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.57
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.56
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.54
PF05004	309	IFRD: Interferon-related developmental regulator (	97.51
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.47
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.46
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.46
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.45
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.42
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.36
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.32
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.32
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.31
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.3
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.27
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.27
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.27
KOG0567	289	consensus HEAT repeat-containing protein [General	97.27
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.22
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.22
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.2
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.17
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.13
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.12
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.08
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.05
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.04
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.02
COG5098	1128	Chromosome condensation complex Condensin, subunit	97.0
KOG2956	516	consensus CLIP-associating protein [General functi	96.98
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.96
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.95
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.93
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.93
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.93
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.92
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.92
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.87
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.85
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.83
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.82
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.76
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.7
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.69
PF05004	309	IFRD: Interferon-related developmental regulator (	96.68
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.67
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.64
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.56
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	96.53
KOG3036	293	consensus Protein involved in cell differentiation	96.51
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.51
KOG2956	516	consensus CLIP-associating protein [General functi	96.49
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.46
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.43
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.41
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.38
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.34
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.29
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.24
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.22
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.21
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.19
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.18
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.17
KOG1243	690	consensus Protein kinase [General function predict	96.17
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.15
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.11
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.11
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.05
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.02
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.0
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.87
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.85
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.82
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.72
PRK14707	2710	hypothetical protein; Provisional	95.66
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	95.62
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.48
KOG2137	700	consensus Protein kinase [Signal transduction mech	95.43
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.4
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.37
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.3
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	95.29
KOG1243	690	consensus Protein kinase [General function predict	95.19
KOG2137	700	consensus Protein kinase [Signal transduction mech	95.17
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	95.04
KOG2025	892	consensus Chromosome condensation complex Condensi	95.04
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.94
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.92
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.91
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.83
KOG2025	892	consensus Chromosome condensation complex Condensi	94.79
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	94.75
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.74
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.71
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	94.69
KOG3036	293	consensus Protein involved in cell differentiation	94.68
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.65
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	94.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.6
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.4
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	94.11
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.1
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.04
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	93.97
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.85
KOG2032	533	consensus Uncharacterized conserved protein [Funct	93.71
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	93.66
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	93.57
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	93.4
COG5098	1128	Chromosome condensation complex Condensin, subunit	93.38
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	93.36
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	93.33
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.3
PRK14707	2710	hypothetical protein; Provisional	93.05
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.84
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.8
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.73
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	92.65
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.62
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.26
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	92.17
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.12
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	91.99
COG5656	970	SXM1 Importin, protein involved in nuclear import	91.98
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	91.88
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	91.75
KOG2032	533	consensus Uncharacterized conserved protein [Funct	91.71
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	91.59
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	91.58
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	91.44
KOG2005	878	consensus 26S proteasome regulatory complex, subun	91.43
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	91.39
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.35
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	90.74
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	90.72
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	90.09
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	90.04
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	89.95
KOG2933	334	consensus Uncharacterized conserved protein [Funct	89.87
KOG0413	1529	consensus Uncharacterized conserved protein relate	89.65
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	89.61
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	89.5
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	89.38
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.16
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	89.11
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	88.7
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	88.58
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	88.47
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	88.18
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	88.01
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	87.71
cd03561	133	VHS VHS domain family; The VHS domain is present i	87.43
KOG1988	970	consensus Uncharacterized conserved protein [Funct	86.94
PF07814	361	WAPL: Wings apart-like protein regulation of heter	86.82
cd03561	133	VHS VHS domain family; The VHS domain is present i	86.74
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	86.62
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.42
PF11538	40	Snurportin1: Snurportin1; InterPro: IPR024721 Snur	86.35
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	86.11
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	85.46
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	85.46
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	85.31
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	85.02
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	84.73
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	84.66
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	84.49
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	84.18
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	83.97
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	83.7
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	83.41
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	82.32
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	82.21
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	82.15
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	81.98
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	81.74
KOG0413	1529	consensus Uncharacterized conserved protein relate	80.86
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	80.76
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	80.49

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2e-78  Score=515.23  Aligned_cols=387  Identities=53%  Similarity=0.810  Sum_probs=356.6

Q ss_pred             CCchHhhhhcCC--CCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhc-cccCCCCCccCCCCCchhhhhcCHHHHHHhhc
Q 015537            7 SKADSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRRE-GLQNQQPLANDVNAPGTAKKLENLPVMVAGVW   83 (405)
Q Consensus         7 ~~~~~r~~~~k~--~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~   83 (405)
                      +.++.|+-+||.  .+.++|+||+|++.+++|||+||+|.++||||. +.+++..+. .  -+..++-...+|.+.+.|.
T Consensus         5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss-~--i~meqq~~~elp~lt~~l~   81 (526)
T COG5064           5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS-F--IPMEQQFYSELPQLTQQLF   81 (526)
T ss_pred             cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc-c--CchhHHhhhhhHHHHHHHh
Confidence            577889999998  578999999999999999999999999999997 333322111 0  0111112235899999999


Q ss_pred             CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHH
Q 015537           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (405)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~  163 (405)
                      |+|-+.|+.|+.-+|+++|.+.+|+++.+++.|++|.|++++.......++++|+|+|+|+++++..+++.+++.|++|.
T Consensus        82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl  161 (526)
T COG5064          82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL  161 (526)
T ss_pred             hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence            99999999999999999999999999999999999999999965443789999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC-chhHHHHHHHHHHHhhcCC-CCCChhhh
Q 015537          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGK-PQPPFDQV  241 (405)
Q Consensus       164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~-~~~~~~~~  241 (405)
                      ++++|.+++.+++++++|+|||++++++.+|+.+++.|++++++.++..+. +.++.++++|+|+|||+++ |++....+
T Consensus       162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i  241 (526)
T COG5064         162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI  241 (526)
T ss_pred             HHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH
Confidence            999999999999999999999999999999999999999999999996443 6899999999999999998 88999999


Q ss_pred             hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHH
Q 015537          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (405)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~  321 (405)
                      ...+|.|.+++.+.|+++..+|||+++||+++..+.++.+++.|+.++|+.+|.+++..++.+|++.+|||++|++.+++
T Consensus       242 sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTq  321 (526)
T COG5064         242 SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQ  321 (526)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       322 ~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n  401 (405)
                      .++++|+++.+..+|+++ ...+|++|||+|+|+++|+.++++.+++++++|+|+++|+..     ++++||+||||++|
T Consensus       322 viI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-----e~k~kKEACWAisN  395 (526)
T COG5064         322 VIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-----EYKIKKEACWAISN  395 (526)
T ss_pred             hheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-----HHHHHHHHHHHHHh
Confidence            999999999999999999 889999999999999999999999999999999999999887     57899999999998


Q ss_pred             h
Q 015537          402 T  402 (405)
Q Consensus       402 ~  402 (405)
                      .
T Consensus       396 a  396 (526)
T COG5064         396 A  396 (526)
T ss_pred             h
Confidence            5

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-74  Score=527.41  Aligned_cols=388  Identities=62%  Similarity=0.944  Sum_probs=355.6

Q ss_pred             CchHhhhhcCC-CCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhhcCHHHHHHhhcCCC
Q 015537            8 KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSND   86 (405)
Q Consensus         8 ~~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~   86 (405)
                      ....|+++||+ +++++|+||||++..+|+||+||+|.++|||+........    .............+.++..+.|++
T Consensus         4 ~~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~S~~   79 (514)
T KOG0166|consen    4 SSNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLD----ELLSDSQSQASNLELMLAALYSDD   79 (514)
T ss_pred             hhHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccc----cccchhHHHhhhhHHHHHHHhCCC
Confidence            34567777877 7999999999999999999999999999999932221111    111111112234789999999999


Q ss_pred             hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH
Q 015537           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (405)
Q Consensus        87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~  166 (405)
                      +..|+.++..++++++.+++|+++.++..|++|.|+++|...+++.++++|+|+|+||++++.++++.+++.|++|.|+.
T Consensus        80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~  159 (514)
T KOG0166|consen   80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ  159 (514)
T ss_pred             HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence            99999999999999999989999999999999999999987666999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCChhhhhccH
Q 015537          167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPAL  245 (405)
Q Consensus       167 lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l  245 (405)
                      ++.+++..++++|+|+|||++++++.+|+.++..|++.+|+.++..+....++++++|+|+|||+++ |.+.+..+..++
T Consensus       160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL  239 (514)
T KOG0166|consen  160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL  239 (514)
T ss_pred             HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999966666799999999999999999 999999999999


Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHh
Q 015537          246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (405)
Q Consensus       246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~  325 (405)
                      |.|..++++.|++|+.++||+++||+++.++.++.+++.|+++.|+.+|.+.++.++.+|++++|||++|++.+++.+++
T Consensus       240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~  319 (514)
T KOG0166|consen  240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN  319 (514)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       326 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      +|+++.|..++..++...+|++|||+|+||++|++++++.+++.|++|.|+++|.+++     .++||||+|||+|+|-
T Consensus       320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-----f~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-----FDIRKEAAWAISNLTS  393 (514)
T ss_pred             cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-----hHHHHHHHHHHHhhcc
Confidence            9999999999996547789999999999999999999999999999999999998873     4799999999999873

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-46  Score=339.25  Aligned_cols=320  Identities=26%  Similarity=0.395  Sum_probs=284.9

Q ss_pred             cCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      +.+|.++++|.. .++.+|++|+|+|.++++++ .+..+.+++.|.+|.|+.++.+++ ..++++|+|+|+|++.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            679999999985 55999999999999999987 788889999999999999999999 999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  230 (405)
                      |+.+++.|++++|+.++..++. .+..++.|+|+|+|.+..+.-..-.-..+++.|..++ .+.|++++..++|++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999998765 7889999999999976522222222334788888888 9999999999999999999


Q ss_pred             cCCC-CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-CCCcchHHHHHHH
Q 015537          231 RGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRT  308 (405)
Q Consensus       231 ~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~  308 (405)
                      .+.+ ........|++|.|+.+|.+.++.++..|+++++|++.+++++.+.+++.|+++.|..+|. ++...++..|||+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            9863 3444445899999999999999999999999999999999999999999999999999998 6666799999999


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       309 l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      |+||++|+.++++.+++.|++|.|+.+|+++ +.++|++|+|+|+|++. |+++++.+|++.|++++++++|...+.   
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~---  421 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDV---  421 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCCh---
Confidence            9999999999999999999999999999999 99999999999999997 799999999999999999999965432   


Q ss_pred             hhhHHHHHHHHHhh
Q 015537          388 GAIIYKLAIWLCLV  401 (405)
Q Consensus       388 ~~~vr~~A~~al~n  401 (405)
                        ++-..+.-+|.|
T Consensus       422 --~ii~v~Ld~l~n  433 (514)
T KOG0166|consen  422 --KIILVALDGLEN  433 (514)
T ss_pred             --HHHHHHHHHHHH
Confidence              344444444444

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.6e-45  Score=312.08  Aligned_cols=309  Identities=24%  Similarity=0.354  Sum_probs=276.6

Q ss_pred             hcCHHHHHHhhc-CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537           72 LENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        72 ~~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      .+.+|.+++++. .+....+++|+|+|.+++|++ ......+++.|.+|.|+++|.+++ .+++.++.|+|+|++.+++.
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence            356999999995 466788999999999999987 677778999999999999999998 89999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537          151 HTKVVIDHGAVPIFVKLLYSPS--DDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (405)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~~--~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~  227 (405)
                      +|+.+++.|++++++.++.+..  ..+...+.|+|+|+|... |+--...+ ..+++.|.+++ ...|+++...|+|+++
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLi-ys~D~evlvDA~WAiS  268 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLI-YSRDPEVLVDACWAIS  268 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence            9999999999999999998754  588999999999999653 22212222 23678888888 8999999999999999


Q ss_pred             HhhcCCC-CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHH
Q 015537          228 NFCRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (405)
Q Consensus       228 ~l~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  306 (405)
                      +|+.+.. ........|+.+.|+++|.+++..++..+++.++|+..+++.+.+.++..|+++.+..+|+++...++..||
T Consensus       269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC  348 (526)
T COG5064         269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC  348 (526)
T ss_pred             HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence            9999962 333334478888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHHHHHhccc
Q 015537          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQVIMHVHAFSIIVAFFFMFL  383 (405)
Q Consensus       307 ~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~lL~~~~  383 (405)
                      |+|+||.+|+.++++.+++.+++|+|+++|.+. +..++++|||+++|.+.|   -|+.++++++.|.+.+|+++|.-.+
T Consensus       349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d  427 (526)
T COG5064         349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD  427 (526)
T ss_pred             eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence            999999999999999999999999999999999 999999999999999974   7899999999999999999998776


Q ss_pred             cc
Q 015537          384 HF  385 (405)
Q Consensus       384 ~~  385 (405)
                      +.
T Consensus       428 Nk  429 (526)
T COG5064         428 NK  429 (526)
T ss_pred             cc
Confidence            54

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=325.37  Aligned_cols=324  Identities=19%  Similarity=0.175  Sum_probs=277.3

Q ss_pred             hcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      .+.+|.++++|.++++..|..|+.++.+++... ..+.+.+++.|++|.|+++|.+++++.+|++|+|+|+||+++++++
T Consensus       188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            368999999999999999999999998887654 4578889999999999999987654799999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------hHHH---HHhcCChHHHHH
Q 015537          152 TKVVIDHGAVPIFVKLLYSPS---------DDVREQAVWALGNIAGDSPR-----------CRDL---VLSQGGLVPLLA  208 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~---------~~i~~~a~~~L~nl~~~~~~-----------~~~~---i~~~~~i~~L~~  208 (405)
                      ++.+++.|++|.|+.++.+++         ..++++++|+|+|||++.+.           .++.   ....|++.+++.
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            999999999999999998654         45699999999999987543           2221   234577888888


Q ss_pred             hhhCCCchhHH----HHHHHHHHHhhcCC-CCCChhh-------------------hhccHHHHHhhhcCCChHHHHHHH
Q 015537          209 QLNGQPKLSML----RNATWTLSNFCRGK-PQPPFDQ-------------------VSPALPALAHLIHSNDDEVLTDAC  264 (405)
Q Consensus       209 ~l~~~~~~~~~----~~a~~~l~~l~~~~-~~~~~~~-------------------~~~~l~~L~~ll~~~d~~v~~~a~  264 (405)
                      .+ +.++....    ..++|+|.+|++++ |......                   ..++++.|+.|+...+.+++.+++
T Consensus       347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av  425 (2102)
T PLN03200        347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI  425 (2102)
T ss_pred             hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence            88 44443333    36789999999987 3331211                   135678889999999999999999


Q ss_pred             HHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhH
Q 015537          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (405)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v  344 (405)
                      |+|.+++.++.+..+.+.+.|+++.|+.+|.+++..++..|+++|+|++.++++++..+++.|++|.|+++|.++ ++.+
T Consensus       426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i  504 (2102)
T PLN03200        426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA  504 (2102)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHH-HhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          345 KKEACWTVSNITAGNREQIQVIM-HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      +++|+|+|+|++.++++ ++.++ +.|++|+|+++|.+++     +.+|++|+|+|.|+++
T Consensus       505 qeeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd-----~~~q~~Aa~AL~nLi~  559 (2102)
T PLN03200        505 KEDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGG-----PKGQEIAAKTLTKLVR  559 (2102)
T ss_pred             HHHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCC-----HHHHHHHHHHHHHHHh
Confidence            99999999999886544 56655 7899999999998763     3699999999999864

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=7.8e-35  Score=304.30  Aligned_cols=322  Identities=17%  Similarity=0.107  Sum_probs=289.0

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +.++.|+.+|.+.+.+.|..+++.|..++.++ ...++.+++.|++|.|+++|.+++ +.+|..|+|+|+|++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            56788999999999999999999999997665 677889999999999999999988 8999999999999999989999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      ..+++.|+||.|+.+|.+++..+++.|+|+|+|++.+++..+..+.+.|++++|+.+| ++.+..++..++|+|.+|+.+
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998888888888899999999999 777899999999999999753


Q ss_pred             CCCC---------------------------------C-----hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537          233 KPQP---------------------------------P-----FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       233 ~~~~---------------------------------~-----~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (405)
                      ....                                 .     .....++++.|+.+++++++.++..|+|+|.+++.+.
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            2110                                 0     0012579999999999999999999999999999999


Q ss_pred             hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (405)
                      .+..+.++..|+++.++.+|++.+.+++..++|+|+|++.+.. .+...+++.|++++|++++.++ +..++..|+-+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997444 5566789999999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          354 NITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      |++... +....+.+.|+++.|+++|.++.+     ..|++|+|||.++|-
T Consensus       720 nLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~-----~~k~~Aa~AL~~L~~  764 (2102)
T PLN03200        720 NLLSDP-EVAAEALAEDIILPLTRVLREGTL-----EGKRNAARALAQLLK  764 (2102)
T ss_pred             HHHcCc-hHHHHHHhcCcHHHHHHHHHhCCh-----HHHHHHHHHHHHHHh
Confidence            998754 446777889999999999998854     589999999999984

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6e-29  Score=214.73  Aligned_cols=320  Identities=18%  Similarity=0.217  Sum_probs=279.5

Q ss_pred             hhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      .+.++..|+..+.++...+|..++.++.+++..  +.....+...|++.++..+-++.+ ..+|..++.+|.|++.. .+
T Consensus       124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs-~E  199 (550)
T KOG4224|consen  124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHS-RE  199 (550)
T ss_pred             eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhh-hh
Confidence            456788888888888889999999999999876  456667889999999999777777 89999999999999887 89


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                      +|+.++..|++|.|+.++++.++++++.+..+++||+.+.. .|..+.+.+  .++.|++++ .++++.++-.+..+|.+
T Consensus       200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn  277 (550)
T KOG4224|consen  200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN  277 (550)
T ss_pred             hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999998766 677788877  899999999 88999999999999999


Q ss_pred             hhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCc-chHHHHHH
Q 015537          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-SVLIPALR  307 (405)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~  307 (405)
                      ++............|.+|.++++++++-.........++.+++-+.-. ...+++.|++..|+.+|..++. +++..|..
T Consensus       278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAvs  356 (550)
T KOG4224|consen  278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAVS  356 (550)
T ss_pred             hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence            998754444444589999999999988877888888899998865433 3458899999999999987765 59999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       308 ~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      +|.|++.........+.+.|.+|.+..++.++ +-.++.+...+++.++-.+ .....+.+.|++|.|+..+.+.+.   
T Consensus       357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~---  431 (550)
T KOG4224|consen  357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESE---  431 (550)
T ss_pred             HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccch---
Confidence            99999998888889999999999999999999 8999999998999886543 336889999999999998876544   


Q ss_pred             hhhHHHHHHHHHhhhcc
Q 015537          388 GAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       388 ~~~vr~~A~~al~n~~~  404 (405)
                        +||.+|+-||+|||-
T Consensus       432 --Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  432 --EVRGNAAAALINLSS  446 (550)
T ss_pred             --hhcccHHHHHHhhhh
Confidence              499999999999984

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.1e-27  Score=201.64  Aligned_cols=318  Identities=19%  Similarity=0.271  Sum_probs=275.4

Q ss_pred             hhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      ..+++..+.++-++.+..+|..++.+|.++...  .+..+.++..|++|.|+.++++++ +++|+.++.+++||+-+ ..
T Consensus       165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd-~~  240 (550)
T KOG4224|consen  165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVD-RR  240 (550)
T ss_pred             hccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhh-HH
Confidence            346788999988889999999999999999653  578889999999999999999999 99999999999999987 77


Q ss_pred             hHHHHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          151 HTKVVIDHG--AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       151 ~~~~~~~~g--~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                      .|+.+.+.+  .+|.|+.++.++++.++.+|..+|+|++.+.. ++..+.+.|.+|.++.++ +++..........|+.|
T Consensus       241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrn  318 (550)
T KOG4224|consen  241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRN  318 (550)
T ss_pred             HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhh
Confidence            888899888  99999999999999999999999999998877 566778999999999999 77777777778889999


Q ss_pred             hhcCCCCCChhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537          229 FCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (405)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  307 (405)
                      ++-++-+.......|++..|+.+|...| .+++..|..+|.+|+..+......+.++|.+|.++.++.+...+++...-.
T Consensus       319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa  398 (550)
T KOG4224|consen  319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA  398 (550)
T ss_pred             cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence            9998755556666899999999999876 559999999999999888888889999999999999999999999998888


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH------hCcHHHHHHHHhc
Q 015537          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH------VHAFSIIVAFFFM  381 (405)
Q Consensus       308 ~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------~~~i~~L~~lL~~  381 (405)
                      +++-++- ++.....+.+.|++|.|+.+..+. +.+++-.|+-+|.|++.. .++...+++      .|+--.|++++.+
T Consensus       399 c~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~-v~~YarviEawd~P~~gi~g~L~Rfl~S  475 (550)
T KOG4224|consen  399 CIAQLAL-NDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD-VEHYARVIEAWDHPVQGIQGRLARFLAS  475 (550)
T ss_pred             HHHHHHh-ccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh-hHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence            8888875 455677899999999999999999 999999999999999763 333333332      4677788998887


Q ss_pred             ccccchhhhHHHHHHHHHhhh
Q 015537          382 FLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       382 ~~~~~~~~~vr~~A~~al~n~  402 (405)
                      .     +..++--|.|.|..+
T Consensus       476 ~-----~~tf~hia~wTI~qL  491 (550)
T KOG4224|consen  476 H-----ELTFRHIARWTIQQL  491 (550)
T ss_pred             h-----HHHHHHHHHHHHHHH
Confidence            6     345889999988654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.89  E-value=1.3e-20  Score=183.56  Aligned_cols=313  Identities=18%  Similarity=0.213  Sum_probs=252.6

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +.++.|+..|.+++.++...++..|.++...  .++...+.+.|+++.|++++.+++ ..++..++++|.|++.+ ++.|
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd-~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFD-PELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcC-HHHH
Confidence            5789999999999999999999999999544  567889999999999999999988 89999999999999998 8889


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      ..+++.|++|.|+.+|.++  ..+..++.+|+|++.+.. ++.++...++++.+++++...+++.+...+++.+.|++.+
T Consensus       366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            9999999999999999854  566779999999998765 8899999999999999986766666666666666666554


Q ss_pred             CCCCC-------------------------------------hhhhhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCC
Q 015537          233 KPQPP-------------------------------------FDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       233 ~~~~~-------------------------------------~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~  274 (405)
                      .....                                     .....+.+..|+..+.. ++++...+++.+|+|++..+
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~  522 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD  522 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence            32111                                     11122333334444444 46889999999999998776


Q ss_pred             hhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWT  351 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~  351 (405)
                      .+..+.+.+.+++|.+..+|..+  ++++...++..+|.++. ++.....+.+.|+++.|+.+|...+ |.++.-..+|+
T Consensus       523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~  601 (708)
T PF05804_consen  523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV  601 (708)
T ss_pred             cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence            66666666779999999999654  45789999999999985 5667777889999999999998763 67899999999


Q ss_pred             HHHHhcCCHHHHHHHH-HhCcHHHHHHHHhcccccchhhhHHHHHHHHH
Q 015537          352 VSNITAGNREQIQVIM-HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLC  399 (405)
Q Consensus       352 L~nl~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al  399 (405)
                      +.++..+.+ .+..++ +.+++..|++++.... .    .||+-|--+|
T Consensus       602 f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N-~----~ir~~~d~~L  644 (708)
T PF05804_consen  602 FYQLLFHEE-TREVLLKETEIPAYLIDLMHDKN-A----EIRKVCDNAL  644 (708)
T ss_pred             HHHHHcChH-HHHHHHhccchHHHHHHHhcCCC-H----HHHHHHHHHH
Confidence            999988754 466666 5899999999996653 3    5898776665

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.88  E-value=9.4e-20  Score=177.54  Aligned_cols=310  Identities=16%  Similarity=0.132  Sum_probs=248.1

Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 015537           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (405)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~  157 (405)
                      +-..++.. ..+..-+...|.+++..  ......+.+.|+++.|+++|++++ .++...++++|.+++.. .+++..+.+
T Consensus       255 ~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~-~ENK~~m~~  329 (708)
T PF05804_consen  255 LQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIF-KENKDEMAE  329 (708)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence            33344333 34555677788888642  455567889999999999999988 89999999999999988 789999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCC
Q 015537          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP  237 (405)
Q Consensus       158 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~  237 (405)
                      .|+++.|.+++.+++.+++..++++|.|++.+.. .|..++..|.++.|+.+| .+  +..+..++.+|+++|..+....
T Consensus       330 ~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL-~d--~~~~~val~iLy~LS~dd~~r~  405 (708)
T PF05804_consen  330 SGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELL-KD--PNFREVALKILYNLSMDDEARS  405 (708)
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHh-CC--CchHHHHHHHHHHhccCHhhHH
Confidence            9999999999999999999999999999997765 789999999999999999 33  3456778999999999865444


Q ss_pred             hhhhhccHHHHHhhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC
Q 015537          238 FDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (405)
Q Consensus       238 ~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  316 (405)
                      .....+++|.++.++. .+++.+..++++.+.|++... ...+.+.+.|+++.|+...-.....   -.+..|.|++.++
T Consensus       406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~  481 (708)
T PF05804_consen  406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHD  481 (708)
T ss_pred             HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcC
Confidence            4455789999988764 456778888899999998654 5568888889999999887543332   2456889999887


Q ss_pred             hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHH
Q 015537          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAI  396 (405)
Q Consensus       317 ~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~  396 (405)
                      ......+.  +++..|+.++..+.++...-++..+|+|++..+.+-.+.+-+.+++|.|.++|..+..+   +++.-+++
T Consensus       482 ~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~---dDl~LE~V  556 (708)
T PF05804_consen  482 GPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE---DDLLLEVV  556 (708)
T ss_pred             chHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC---hHHHHHHH
Confidence            54333333  47888888888876889999999999999876555445555789999999999877555   48999999


Q ss_pred             HHHhhhccC
Q 015537          397 WLCLVTCCE  405 (405)
Q Consensus       397 ~al~n~~~~  405 (405)
                      .++|.+|+.
T Consensus       557 i~~gtla~d  565 (708)
T PF05804_consen  557 ILLGTLASD  565 (708)
T ss_pred             HHHHHHHCC
Confidence            999998873

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.79  E-value=2.3e-17  Score=157.44  Aligned_cols=317  Identities=22%  Similarity=0.265  Sum_probs=241.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch--h
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--H  151 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~--~  151 (405)
                      .+|+.+.+|.+.++.+|-.|...+..+..++ +.....+-+.|+|+.|+.+|.+.+ .+++..|+|+|.|+..++..  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence            6899999999999999999999999886554 566667778999999999999999 99999999999999998766  8


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC-------------CCchh
Q 015537          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------------QPKLS  217 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~-------------~~~~~  217 (405)
                      .-.+.+.++|+.++.+|+. .|.+++++...+|+||++.+. ++..++. ..+..|...+..             ..+.+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence            8889999999999999997 799999999999999998744 5555443 356666555421             11367


Q ss_pred             HHHHHHHHHHHhhcCCCC--CChhhhhccHHHHHhhhc------------------------------------------
Q 015537          218 MLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIH------------------------------------------  253 (405)
Q Consensus       218 ~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~L~~ll~------------------------------------------  253 (405)
                      +..+++.||.|++.....  .......|++..|+..++                                          
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            889999999999874311  111111333333333222                                          


Q ss_pred             ------------------------------------------------------------CCChHHHHHHHHHHHHhccC
Q 015537          254 ------------------------------------------------------------SNDDEVLTDACWALSYLSDG  273 (405)
Q Consensus       254 ------------------------------------------------------------~~d~~v~~~a~~~l~~l~~~  273 (405)
                                                                                  +.++.+.+.++.+|-|++.+
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                                                                        12334555566666666654


Q ss_pred             Ch----hHHHHH-HhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCc-----hh
Q 015537          274 TN----DKIQAV-IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK-----KS  343 (405)
Q Consensus       274 ~~----~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-----~~  343 (405)
                      ..    .....+ .+..+++.++.+|..+++.+...++.+|.|++.+.  ..+.++..++++-|++.|..+..     .+
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sed  627 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSED  627 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence            32    222223 55678899999999999999999999999998543  34556778899999999987633     68


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537          344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                      +...+|.+|.|+.+.+......+.+.+.++.|+-+.++..+    +++-+.|.-.+-
T Consensus       628 tv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S----~k~~kaAs~vL~  680 (717)
T KOG1048|consen  628 TVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHS----PKEFKAASSVLD  680 (717)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCC----HHHHHHHHHHHH
Confidence            88999999999999999999999999999999999888433    366666665554

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=1.9e-15  Score=130.31  Aligned_cols=309  Identities=12%  Similarity=0.109  Sum_probs=242.6

Q ss_pred             CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChH
Q 015537           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (405)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~-~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~  162 (405)
                      +++....++++.++..+..+.     ..+.+..++..++.+|... ++.++....+.++..-|-...-+++.+++.++.+
T Consensus       118 ~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            456677777888877765332     2466777899999998642 3378888888888888888788999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          163 IFVKLLYS-PSDDVREQAVWALGNIAGDSP---------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       163 ~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~---------~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      .+...|.. ...++...+.|++.-+..++.         ....++...|++..|+..+.-..++.+...++.+|..|+-.
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99977765 445688889999999885543         34466778888999999997777899999999999999887


Q ss_pred             CCCCChhhhhccHHHHHhhhcCC-ChH---HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc--CCCCcchHHHHH
Q 015537          233 KPQPPFDQVSPALPALAHLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPSVLIPAL  306 (405)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~  306 (405)
                      +.-.......|++..|+.++.+. +..   ....++..|..|+ ++++....+++.|+.+.++.++  .+++|.+...++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            55455555689999999999774 333   4466777888887 5566678899999999999998  456889999999


Q ss_pred             HHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhccccc
Q 015537          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHF  385 (405)
Q Consensus       307 ~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~  385 (405)
                      .+++-++-..+++...+++.|+-...+..+... ....+++.+||.+.||+..+.++...+++.|+=..+.....+.  +
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h--~  429 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANH--E  429 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcC--c
Confidence            999999998888888999999999999988854 3568999999999999999999888888776655554444332  2


Q ss_pred             chhhhHHHHHHHHHhhhcc
Q 015537          386 FFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       386 ~~~~~vr~~A~~al~n~~~  404 (405)
                          ..+..|.-||.-+=|
T Consensus       430 ----tce~~akaALRDLGc  444 (461)
T KOG4199|consen  430 ----TCEAAAKAALRDLGC  444 (461)
T ss_pred             ----cHHHHHHHHHHhcCc
Confidence                567777767665544

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=3.7e-16  Score=148.90  Aligned_cols=262  Identities=22%  Similarity=0.353  Sum_probs=229.2

Q ss_pred             CHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      .+..|++.|+.. |+..|.+|+..+..+++....+....+--.-++|.|+.+|+..++.++...|+++|++++.--|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            368888888875 9999999999999999877555555454556799999999998889999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      ..+++.++||.|+.-|.. .-.++.++++.+|-.|+...+   ..+++.|++-..+.+| ..-...+++.|+.+.+|+|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999986655 678999999999999998766   4678999999999988 66688999999999999999


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC---ChhHHHHHHhcCChHHHHHhcCCCC----cchHHH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPS----PSVLIP  304 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~  304 (405)
                      .-+...+..+...+|.|..+|++.|.+..+.+|-++.+++++   .++..+.+...|++....++|.-..    ..+...
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            988888888899999999999999999999999999999865   5678888999999999999996543    356777


Q ss_pred             HHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 015537          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN  339 (405)
Q Consensus       305 a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~  339 (405)
                      .++.+.-++++.+.....+...++...|..+|...
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence            88999999999888888888889999999988743

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=1.3e-14  Score=125.21  Aligned_cols=280  Identities=15%  Similarity=0.137  Sum_probs=224.4

Q ss_pred             hcCcHHHHHHHh---cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 015537          114 RSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAG  188 (405)
Q Consensus       114 ~~g~l~~Li~lL---~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~  188 (405)
                      ..|..+.++.++   .+++ ..+...++.+|..+..+.|+    +.+..+...++.+|..  ++.++....+.++..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            456666555444   3444 67888899999888887665    5567789999998865  577888888888888888


Q ss_pred             CChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC-Chh---------hhhccHHHHHhhhcC-CCh
Q 015537          189 DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFD---------QVSPALPALAHLIHS-NDD  257 (405)
Q Consensus       189 ~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~---------~~~~~l~~L~~ll~~-~d~  257 (405)
                      ..+.+|+.+++.++++.+...|.......+.+.++|++..|...+... .+.         .-.+++..|++.++- -||
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            888899999999999999988866666689999999999998765321 111         114567788888865 379


Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC-CCcchH---HHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 015537          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVL---IPALRTVGNIVTGDDMQTQCVIEYQALPCLL  333 (405)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~---~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~  333 (405)
                      .+..+.+.+|..|+- .++..+.+.+.|++..|+.++.+ ++...+   ..++..|..++ |++.....+++.|+++.++
T Consensus       257 ~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHH
Confidence            999999999999985 44667789999999999999976 444444   55666676665 7888899999999999999


Q ss_pred             HhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          334 NLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       334 ~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      .++.. ..+|.|..+++.+++-++-.+|++....++.|+-...++.|+....   ...|+++|+|+|.|..
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~---~a~vQrnac~~IRNiv  402 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV---AAQVQRNACNMIRNIV  402 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH---HHHHHHHHHHHHHHHH
Confidence            98763 3489999999999999999999999999999999999999987643   4689999999999974

>PRK09687 putative lyase; Provisional

Probab=99.71  E-value=5.1e-15  Score=131.52  Aligned_cols=255  Identities=15%  Similarity=0.103  Sum_probs=199.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .++.|+..|.+.+..++..|+..|..+-.            ..+++.+..++.+++ +.+|..|+|+|+.+......   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            46889999999999999999999987732            234778888888888 99999999999998653211   


Q ss_pred             HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          154 VVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       154 ~~~~~g~i~~L~~l-L~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                         ...+++.|..+ ++++++.|+..++.+||+++......     ...++..+...+ .+++..|+..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11357788776 67789999999999999996443211     111344555666 77799999999999976643 


Q ss_pred             CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                               ...++.|+.++.++|+.|+..++.+|+.+...++         .+++.|+..|.+.++.|+..|+++||.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     2588999999999999999999999999843333         2357899999999999999999999996


Q ss_pred             hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY  392 (405)
Q Consensus       313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr  392 (405)
                      -  ++         ..+|.|++.+.++ +  ++..++.+|+++.  ++         ..+|.|..++....+.    .|+
T Consensus       220 ~--~~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig--~~---------~a~p~L~~l~~~~~d~----~v~  270 (280)
T PRK09687        220 K--DK---------RVLSVLIKELKKG-T--VGDLIIEAAGELG--DK---------TLLPVLDTLLYKFDDN----EII  270 (280)
T ss_pred             C--Ch---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcC--CH---------hHHHHHHHHHhhCCCh----hHH
Confidence            3  22         4688999999987 4  6789999999993  33         3578888888755444    799


Q ss_pred             HHHHHHHhh
Q 015537          393 KLAIWLCLV  401 (405)
Q Consensus       393 ~~A~~al~n  401 (405)
                      ..|.|+|..
T Consensus       271 ~~a~~a~~~  279 (280)
T PRK09687        271 TKAIDKLKR  279 (280)
T ss_pred             HHHHHHHhc
Confidence            999999853

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.69  E-value=6e-16  Score=154.27  Aligned_cols=266  Identities=19%  Similarity=0.171  Sum_probs=223.6

Q ss_pred             HHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-----------CHHHHHHHHHHHHHHhcCCchhHHHHHhC-C
Q 015537           92 ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVIDH-G  159 (405)
Q Consensus        92 ~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-----------~~~~~~~a~~~L~ni~~~~~~~~~~~~~~-g  159 (405)
                      .|+..|.++ +++ .+....+-+.|++..+-+||.-+.           .-.++.+|..+|+|+++++..++..+... |
T Consensus       317 aA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  317 AALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             HHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            567777777 554 688888999999998888875321           24689999999999999988777766554 8


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC--CCC
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQP  236 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~  236 (405)
                      ++..++..|.+...++.+..+.+|.||+-. +...+..+-+.|.+..|...-.....+..++.++.+||||+-+.  ...
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA  474 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA  474 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence            999999999999999999999999999943 23355667788889999888767888888999999999999887  556


Q ss_pred             ChhhhhccHHHHHhhhcCC----ChHHHHHHHHHHHHhc---cCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537          237 PFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLS---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (405)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l  309 (405)
                      .+..+.|++.+|+.+|...    --.|++.+-.+|.|++   ...+++.+.+.+.+.+..|++.|++.+-.+...+|.+|
T Consensus       475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL  554 (2195)
T KOG2122|consen  475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL  554 (2195)
T ss_pred             hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence            6777899999999999754    2456676666666654   45677788899999999999999999999999999999


Q ss_pred             hHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (405)
Q Consensus       310 ~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  360 (405)
                      +||...+++..+.+++.|.++.|..++.+. +..+...++-+|.|+...-|
T Consensus       555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCc
Confidence            999999999999999999999999999999 99999999999999987543

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.69  E-value=5.5e-14  Score=135.74  Aligned_cols=315  Identities=18%  Similarity=0.165  Sum_probs=240.3

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~  155 (405)
                      +.++..|.+.+.+....++.+|.+++...   ....+ ..++.+.|...|.+++ +.++..+++.|++++.++......+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~---~~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL---SPDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc---CHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            44788888888888888889999998643   22222 5677899999999998 9999999999999999877778888


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC
Q 015537          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (405)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  235 (405)
                      .+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence            89999999999999999999999999999999877654 5566777888888888 555777888899999999987633


Q ss_pred             C-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCc-----chH-HHHHHH
Q 015537          236 P-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-----SVL-IPALRT  308 (405)
Q Consensus       236 ~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----~v~-~~a~~~  308 (405)
                      . ......|+++.++..+.++|.-++.+++..+..|+. .+...+.+.+.|+++.|..++.+.+.     .+. ...+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            2 233337899999999999999999999999999998 66678889999999999999965422     223 334477


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HH-hCcHHHHHHHHhcccccc
Q 015537          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVI-MH-VHAFSIIVAFFFMFLHFF  386 (405)
Q Consensus       309 l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~-~~~i~~L~~lL~~~~~~~  386 (405)
                      .|+++...+....... ..++..+..++.+. ++..+..|.-++|.++. +.+..+.+ .. .+.++..+......... 
T Consensus       273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~-  348 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKS-  348 (503)
T ss_pred             HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcC-
Confidence            7888875433222111 34677778888888 99999999999999974 45555555 33 33444444443332222 


Q ss_pred             hhhhHHHHHHHHHhhh
Q 015537          387 FGAIIYKLAIWLCLVT  402 (405)
Q Consensus       387 ~~~~vr~~A~~al~n~  402 (405)
                      ...++|..+..+++++
T Consensus       349 ~~~~lk~r~l~al~~i  364 (503)
T PF10508_consen  349 GSTELKLRALHALASI  364 (503)
T ss_pred             CchHHHHHHHHHHHHH
Confidence            1235888888888876

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.68  E-value=9.9e-14  Score=133.99  Aligned_cols=319  Identities=18%  Similarity=0.201  Sum_probs=241.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      ..+.+...|.++++.++..+++.+.+++... ....+.+.+.++++.++.++.+++ ..+...|+.+|.+++.. +...+
T Consensus        78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~-~~~~~  154 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASH-PEGLE  154 (503)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCC-chhHH
Confidence            3577788999999999999999999987543 444666778999999999999998 89999999999999987 55666


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      .+++.+.++.|..++..++..++..+..++.+++..++.....+...|.++.++..+ ++.|.-++.+++.++..|+..+
T Consensus       155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~  233 (503)
T PF10508_consen  155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETP  233 (503)
T ss_pred             HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcCh
Confidence            788888899999999988889999999999999999999999999999999999999 6699999999999999999965


Q ss_pred             CCCChhhhhccHHHHHhhhcCC--Ch---H-HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537          234 PQPPFDQVSPALPALAHLIHSN--DD---E-VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~--d~---~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  307 (405)
                      .......-.|+++.|..++...  |+   . .....+...++++..++..+.... ..++..+..++.+.++..+..|+.
T Consensus       234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~d  312 (503)
T PF10508_consen  234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFD  312 (503)
T ss_pred             hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHH
Confidence            5555555589999999999754  33   1 223334666777764443322111 245667777888999999999999


Q ss_pred             HHhHhhcCChhhHHHH-HhcC-----chHHHHHhhcCCCchhHHHHHHHHHHHHhcC----CHHHHHHH-------HHhC
Q 015537          308 TVGNIVTGDDMQTQCV-IEYQ-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAG----NREQIQVI-------MHVH  370 (405)
Q Consensus       308 ~l~nl~~~~~~~~~~~-~~~g-----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~----~~~~~~~l-------~~~~  370 (405)
                      ++|.|++.. +....+ ...|     ++..+.....++ ...+|..+.-+++++...    ..+.+..+       ...+
T Consensus       313 tlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~  390 (503)
T PF10508_consen  313 TLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS  390 (503)
T ss_pred             HHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence            999998544 444444 3332     455555555566 778999999999999542    12222121       1223


Q ss_pred             cHH-HHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          371 AFS-IIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       371 ~i~-~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      -.. .++.+++.+.     |++|-.|.-.|...|.
T Consensus       391 ~~~~~l~~~~~qPF-----~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  391 PLSNLLMSLLKQPF-----PELRCAAYRLLQALAA  420 (503)
T ss_pred             chHHHHHHHhcCCc-----hHHHHHHHHHHHHHhc
Confidence            333 5566665442     4699999888877764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.66  E-value=8.1e-15  Score=130.36  Aligned_cols=314  Identities=13%  Similarity=0.061  Sum_probs=221.8

Q ss_pred             CChHHHHHHHHHHHHhhccC--CCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChH
Q 015537           85 NDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (405)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~  162 (405)
                      .+..+...+..++.+....+  ++...+.-+++++++.|.+..++++ .++..++.++|+|+|.++.+.|..+.+.|+-+
T Consensus        54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq  132 (604)
T KOG4500|consen   54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQ  132 (604)
T ss_pred             ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence            34455666666676664221  1111223356778888888888886 79999999999999999999999999999988


Q ss_pred             HHHHhhCC----C---CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh-CCCchhHHHHHHHHHHHhhcCCC
Q 015537          163 IFVKLLYS----P---SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       163 ~L~~lL~~----~---~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                      .++.+|+.    +   +.+....+...|.|..-++...+..+++.|+++.|...+- ..++....+.....+.|+.+-..
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            88888875    2   3467778889999999999999999999999999988873 34455555554444444433211


Q ss_pred             C--CChhhhhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC-CCc-------chHH
Q 015537          235 Q--PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSP-------SVLI  303 (405)
Q Consensus       235 ~--~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-------~v~~  303 (405)
                      .  .++.....+.-.+++++.+ -.+++..-++..+.+.++++.-.. .+.+.|.+..+++++.. ++.       ....
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k  291 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK  291 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence            1  1111123344445555543 356677778888888887665443 47888999999999854 221       2233


Q ss_pred             HHHHHHhHhhcCChhhHHHHHhcC-chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537          304 PALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMF  382 (405)
Q Consensus       304 ~a~~~l~nl~~~~~~~~~~~~~~g-~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~  382 (405)
                      .++..+.-+..|++. .+.+...+ ++..+..++.+. +......+..+|+|+++.+.. ..++++.|.+..|+++|...
T Consensus       292 ~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~  368 (604)
T KOG4500|consen  292 RIAELDVLLLTGDES-MQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQE  368 (604)
T ss_pred             hhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHh
Confidence            344444455566654 44455555 999999999999 999999999999999876554 67889999999999999764


Q ss_pred             cccchhhhHHHHHHHHHhhhc
Q 015537          383 LHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       383 ~~~~~~~~vr~~A~~al~n~~  403 (405)
                      ........++-.++-||.|+-
T Consensus       369 ~~vdgnV~~qhA~lsALRnl~  389 (604)
T KOG4500|consen  369 KDVDGNVERQHACLSALRNLM  389 (604)
T ss_pred             cCCCccchhHHHHHHHHHhcc
Confidence            444334455667888888873

>PRK09687 putative lyase; Provisional

Probab=99.66  E-value=1.2e-14  Score=129.10  Aligned_cols=225  Identities=12%  Similarity=0.069  Sum_probs=178.6

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (405)
                      -++.|..+|.+.+ ..++..|+++|..+-..           .+++.+..++.++++.++..++|+|+.|-.....    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            4788999998888 89999999999987542           4678888899999999999999999998543211    


Q ss_pred             HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (405)
Q Consensus       197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (405)
                        ....++.|..++.+++++.|+..++.+|.+++...+..    ...+++.+...+.++++.|+..++++|+.+..  + 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence              11245677777668899999999999999997653212    12355667777888899999999999987642  2 


Q ss_pred             HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       277 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                              ..++.|+.+|.++++.++..|+.+||.+..+++         .+++.|+.++.+. ++.||..|.|+|+.+ 
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~-  219 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR-  219 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc-
Confidence                    246899999999999999999999999943333         3567789999988 999999999999997 


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          357 AGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                       +++         .++|.|+..|...       .++..|+.|||++
T Consensus       220 -~~~---------~av~~Li~~L~~~-------~~~~~a~~ALg~i  248 (280)
T PRK09687        220 -KDK---------RVLSVLIKELKKG-------TVGDLIIEAAGEL  248 (280)
T ss_pred             -CCh---------hHHHHHHHHHcCC-------chHHHHHHHHHhc
Confidence             233         4578888888764       4788999999876

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.66  E-value=2.5e-14  Score=124.26  Aligned_cols=197  Identities=19%  Similarity=0.236  Sum_probs=164.1

Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 015537          112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (405)
Q Consensus       112 ~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~  191 (405)
                      +++.+-++.|+.+|+...+|.++..|+.+++|.+.. +..+..+.+.|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence            356677899999999776699999999999998776 8899999999999999999999999999999999999997766


Q ss_pred             hhHHHHHhcCChHHHHHhhhCC-CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh
Q 015537          192 RCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (405)
Q Consensus       192 ~~~~~i~~~~~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l  270 (405)
                       .+..+..  .+..++...... -+..++..++.+|.+|+..+..  ...+.+.+|.++.+|.+++..++..++++|.+|
T Consensus        87 -n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 -NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             -hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence             4455433  466666655343 4788999999999999876422  233467899999999999999999999999999


Q ss_pred             ccCChhHHHHHHhcCChHHHHHhcCCC-CcchHHHHHHHHhHhhcC
Q 015537          271 SDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTG  315 (405)
Q Consensus       271 ~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~  315 (405)
                      +... .....++..+++..++.++... +.++...++..+.||..+
T Consensus       162 S~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  162 SENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             ccCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            9644 5567788999999999999765 678888999999999643

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.63  E-value=3.3e-14  Score=136.07  Aligned_cols=282  Identities=19%  Similarity=0.185  Sum_probs=220.4

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--hH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CR  194 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~--~~  194 (405)
                      -+|..+.+|.+.+ +.+|..|+.-+..+|.++.+.+..+.+.|+|+.|+.+|.+.+.+|+.+++|+|.||......  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            3788899999888 89999999999999999999999999999999999999999999999999999999966544  67


Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC--------------CChHHH
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--------------NDDEVL  260 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~--------------~d~~v~  260 (405)
                      -.+.+.++++.++.+|....|.++++.++.+|+||+.++ ......+...++.|..-+-.              .+.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            788899999999999977789999999999999999983 34444455666665543311              135678


Q ss_pred             HHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcC--------------------------------------------
Q 015537          261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLM--------------------------------------------  295 (405)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~--------------------------------------------  295 (405)
                      .++..+|.|++....+..+.+-+. |++..|+..++                                            
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            888889999887666655556554 55555544332                                            


Q ss_pred             ----------------------------------------------------------CCCcchHHHHHHHHhHhhcCCh
Q 015537          296 ----------------------------------------------------------HPSPSVLIPALRTVGNIVTGDD  317 (405)
Q Consensus       296 ----------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~  317 (405)
                                                                                +.++.+.+.+..+|.|++.+..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                                                                      1112236778888999988764


Q ss_pred             ----hhHHHH-HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhccccc-chhhhH
Q 015537          318 ----MQTQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHF-FFGAII  391 (405)
Q Consensus       318 ----~~~~~~-~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~-~~~~~v  391 (405)
                          .....+ ....+++.|+.+|..+ ++.+.+.++-+|.|++.+-.  .+.++..++++.|++.|...... ..+.++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence                233334 5678999999999999 99999999999999987533  36677799999999999877651 123467


Q ss_pred             HHHHHHHHhhhc
Q 015537          392 YKLAIWLCLVTC  403 (405)
Q Consensus       392 r~~A~~al~n~~  403 (405)
                      -..++..|.|+.
T Consensus       629 v~~vc~tl~niv  640 (717)
T KOG1048|consen  629 VRAVCHTLNNIV  640 (717)
T ss_pred             HHHHHHhHHHHH
Confidence            777777777764

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.62  E-value=7.3e-14  Score=139.77  Aligned_cols=323  Identities=17%  Similarity=0.151  Sum_probs=238.9

Q ss_pred             hcCHHHHHHhhcCC---ChHHHHHHHHHHHHhhccCCCCch--HHHHhcCcHH-------HHHHHhcCCC------CHHH
Q 015537           72 LENLPVMVAGVWSN---DSGVQYECTTQFRKLLSIERSPPI--EEVIRSGVVP-------RFVEFLLRED------YPQL  133 (405)
Q Consensus        72 ~~~l~~l~~~l~s~---~~~~~~~a~~~l~~l~s~~~~~~~--~~~~~~g~l~-------~Li~lL~~~~------~~~~  133 (405)
                      .+.+|.+++.+...   +.+.+..|-.+|.+++..+.+...  +++--.-+++       ++..++....      ...-
T Consensus       234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H  313 (2195)
T KOG2122|consen  234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEH  313 (2195)
T ss_pred             ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccch
Confidence            45689999999864   357888888999999765422221  1111111122       2223333321      1223


Q ss_pred             HH-HHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCChhhHHH-HHh
Q 015537          134 QF-EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS------------PSDDVREQAVWALGNIAGDSPRCRDL-VLS  199 (405)
Q Consensus       134 ~~-~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~------------~~~~i~~~a~~~L~nl~~~~~~~~~~-i~~  199 (405)
                      +. .|+.+|..++++ .++|..+-+.|+++.+-.|+.-            ....++..+..+|.||...+...+.. .-.
T Consensus       314 ~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~  392 (2195)
T KOG2122|consen  314 QLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ  392 (2195)
T ss_pred             hhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence            44 677788888887 9999999999999999998752            23568999999999998666555443 446


Q ss_pred             cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh--hhhccHHHHHhh-hcCCChHHHHHHHHHHHHhccCChh
Q 015537          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTND  276 (405)
Q Consensus       200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~L~~l-l~~~d~~v~~~a~~~l~~l~~~~~~  276 (405)
                      .|++..++..| .+...++....+..|.||+-.-......  ...|.+..|... ++......+..++.+|+||+.++.+
T Consensus       393 rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte  471 (2195)
T KOG2122|consen  393 RGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE  471 (2195)
T ss_pred             hhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence            78899999999 6777789999999999998764222222  224555555543 5556677889999999999999888


Q ss_pred             HHHHHHhc-CChHHHHHhcCCC----CcchHHHHHHHHhHhh---cCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHH
Q 015537          277 KIQAVIEA-GVFPRLAEFLMHP----SPSVLIPALRTVGNIV---TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA  348 (405)
Q Consensus       277 ~~~~~~~~-~~l~~L~~lL~~~----~~~v~~~a~~~l~nl~---~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a  348 (405)
                      +...++.- |.+..|+.+|...    ...+...+-.+|-|+.   +.++.+.+.+.++++|..|+..|.+. ...|...+
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNa  550 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNA  550 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecc
Confidence            77777765 9999999999765    3357777777777766   45667888889999999999999999 99999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          349 CWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      |.+|+||.+.+++..+.|++.|.++.|-.++.+. +.    .|-.-++-||.|+
T Consensus       551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hk----MIa~GSaaALrNL  599 (2195)
T KOG2122|consen  551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HK----MIAMGSAAALRNL  599 (2195)
T ss_pred             hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hh----hhhhhHHHHHHHH
Confidence            9999999999999889999999999999999765 22    4555555666665

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.61  E-value=1.3e-14  Score=113.17  Aligned_cols=117  Identities=25%  Similarity=0.356  Sum_probs=108.3

Q ss_pred             HHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (405)
Q Consensus       281 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  360 (405)
                      +++.|+++.++.+|.++++.++..++++|++++...+.....+++.|+++.+..++.++ ++.++..++|+|+|++.+.+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56889999999999999999999999999999998888888899999999999999998 99999999999999999888


Q ss_pred             HHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          361 EQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       361 ~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      .....+.+.|+++.|++++...     +..+++.|+|+|+|+|
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~-----~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSS-----NEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcC-----CHHHHHHHHHHHHHhh
Confidence            8788888999999999999766     2479999999999987

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.60  E-value=2.8e-14  Score=111.23  Aligned_cols=119  Identities=35%  Similarity=0.611  Sum_probs=111.3

Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 015537          111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS  190 (405)
Q Consensus       111 ~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~  190 (405)
                      .+++.|+++.|+++|.+++ +.++..++++|++++.++++....+++.|+++.++.+|.++++.++..++|+|+|++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4678899999999999988 899999999999999998999999999999999999999999999999999999999988


Q ss_pred             hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       191 ~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      +..+..+...|+++.++.++ ...+..+++.++|+|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            87888888899999999999 67789999999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.55  E-value=1.5e-15  Score=111.33  Aligned_cols=90  Identities=43%  Similarity=0.632  Sum_probs=60.4

Q ss_pred             CCCchHhhhhcCC-CCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhccccCCCCCc-c-CCCCCc-hhhhhcCHHHHHHh
Q 015537            6 NSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA-N-DVNAPG-TAKKLENLPVMVAG   81 (405)
Q Consensus         6 ~~~~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~-~-~~~~~~-~~~~~~~l~~l~~~   81 (405)
                      ....+.|++.||+ ++|++|+|+||++..|+|||+||+|.|.|||++........+ . ...... .......+|.++..
T Consensus         3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~   82 (97)
T PF01749_consen    3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG   82 (97)
T ss_dssp             ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred             ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence            4577899999999 699999999999999999999999999999998654433211 1 111111 11122457899999


Q ss_pred             hcCCChHHHHHHHH
Q 015537           82 VWSNDSGVQYECTT   95 (405)
Q Consensus        82 l~s~~~~~~~~a~~   95 (405)
                      +.|+|+..|+.|+.
T Consensus        83 v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   83 VNSDDPEVQLEATQ   96 (97)
T ss_dssp             HTSSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHhhC
Confidence            99999999999975

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.51  E-value=6.2e-12  Score=112.25  Aligned_cols=309  Identities=12%  Similarity=0.039  Sum_probs=231.5

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC------CHHHHHHHHHHHHHHhc
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIAS  146 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~------~~~~~~~a~~~L~ni~~  146 (405)
                      +.+..+.+...|+|.++..+..++|.+++..+ ++....+.+.|+-..+++.|+...      +.+.-.-+...|.|..-
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            44677777778888999999999999998776 889999999999888888876421      24566667788999999


Q ss_pred             CCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHH
Q 015537          147 GTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (405)
Q Consensus       147 ~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~  223 (405)
                      ++.+.+..+++.|+++.|...+.-  .+....+......+|+.+-- +...+...+......+++++....++.+...+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            989999999999999999988764  57777788887778776432 223344555666777888886667888888888


Q ss_pred             HHHHHhhcCCCCCChhhhhccHHHHHhhhcC-CCh-------HHHHHHHHHHHHhccCChhHHHHHHhcC-ChHHHHHhc
Q 015537          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDD-------EVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFL  294 (405)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~-------~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~lL  294 (405)
                      ..+...++++.-.....-.|.+..+..+++. .+.       .....++....-+..+++.. +++...+ +++.+..++
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHh
Confidence            8999998886433333346777777777754 221       12233344444444455543 4565555 899999999


Q ss_pred             CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 015537          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQVIMHVH  370 (405)
Q Consensus       295 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (405)
                      .+++......+..+|||++..++.. .++++.|++..|+.++....    +-.++..++.+|.|++---+. ...++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n-ka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN-KAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc-hhhccccc
Confidence            9999999999999999999766654 45888899999999997521    567788899999999763333 46777899


Q ss_pred             cHHHHHHHHhccccc
Q 015537          371 AFSIIVAFFFMFLHF  385 (405)
Q Consensus       371 ~i~~L~~lL~~~~~~  385 (405)
                      +.+.+...++....+
T Consensus       403 vteaIL~~lk~~~pp  417 (604)
T KOG4500|consen  403 VTEAILLQLKLASPP  417 (604)
T ss_pred             hHHHHHHHHHhcCCc
Confidence            999999888877655

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.51  E-value=1.6e-11  Score=127.11  Aligned_cols=259  Identities=18%  Similarity=0.131  Sum_probs=170.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .++.|++.|.++++.++..|+..|..+..            .+.++.|+..|++++ +.++..|+.+|..+....+    
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC----
Confidence            46889999999999999999999988732            235788888888777 8999999888888743211    


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh------------hhHHHH----HhcCChHHHHHhhhCCCchh
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP------------RCRDLV----LSQGGLVPLLAQLNGQPKLS  217 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~------------~~~~~i----~~~~~i~~L~~~l~~~~~~~  217 (405)
                            ..+.|...|.++++.++..++.+|+.+....+            ..|...    ...+..+.|+..+ .+++..
T Consensus       685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~~  757 (897)
T PRK13800        685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENRE  757 (897)
T ss_pred             ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCHH
Confidence                  12344555555555666656555554421110            001000    0111223444455 666667


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC
Q 015537          218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP  297 (405)
Q Consensus       218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  297 (405)
                      ++..++.+|..+....+        ..++.|..+++++|+.|+..++.+|+.+.....          +.+.++..|.++
T Consensus       758 VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~----------~~~~l~~aL~d~  819 (897)
T PRK13800        758 VRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPPD----------DVAAATAALRAS  819 (897)
T ss_pred             HHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch----------hHHHHHHHhcCC
Confidence            77777777666654321        235667777777788888888888877743211          124567777888


Q ss_pred             CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHH
Q 015537          298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVA  377 (405)
Q Consensus       298 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  377 (405)
                      ++.++..|+.+|+.+..           ...++.|..+|.++ ++.||+.|+++|+.+ .+++..         .+.|..
T Consensus       820 d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~a---------~~~L~~  877 (897)
T PRK13800        820 AWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPAA---------RDALTT  877 (897)
T ss_pred             ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHHH---------HHHHHH
Confidence            88888888888887642           13458889999998 999999999999997 344443         445566


Q ss_pred             HHhcccccchhhhHHHHHHHHHhh
Q 015537          378 FFFMFLHFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       378 lL~~~~~~~~~~~vr~~A~~al~n  401 (405)
                      .|+.. +    +.||++|..||..
T Consensus       878 al~D~-d----~~Vr~~A~~aL~~  896 (897)
T PRK13800        878 ALTDS-D----ADVRAYARRALAH  896 (897)
T ss_pred             HHhCC-C----HHHHHHHHHHHhh
Confidence            67543 2    4799999999864

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=9.8e-13  Score=114.34  Aligned_cols=194  Identities=21%  Similarity=0.235  Sum_probs=160.3

Q ss_pred             HhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537          156 IDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       156 ~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                      ++.+-++.|+.+|+. .+|.+++.+..+++|.+..+ ..++.+.+.|+++.+.+++ .++++.++..+++++.|++...+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Confidence            566778999999996 68999999999999987655 5889999999999999999 88999999999999999988753


Q ss_pred             CCChhhhhccHHHHHhhhcC--CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          235 QPPFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                      ...  .+...++.+.+.+.+  -|.+++..++.+|.+|+-.++.  ..++ .+.++.++.+|.+++..++..++++|.|+
T Consensus        87 n~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 NQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            322  334466666665443  3789999999999999855433  2233 34789999999999999999999999999


Q ss_pred             hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      +.. +..+..++..+++..++.+++.+.+..+-..+.+.+.||..
T Consensus       162 S~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  162 SEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             ccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            864 45566788889999999999988678889999999999964

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=3.8e-13  Score=125.64  Aligned_cols=315  Identities=18%  Similarity=0.187  Sum_probs=200.9

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHH-HHh---cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-VIR---SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~~~---~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~  148 (405)
                      +.+|.|.++|.+++...+.-|..+|.++...+ ....+. +.+   .-.+|.|+++.++++ |.+|..|+.|+..+.-..
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence            45899999999999999999999999996432 111111 000   125899999999998 999999999998866543


Q ss_pred             chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (405)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~  227 (405)
                      +..-..-++ ..++.+..+-.+.+++|+.+.+.++..+..-.+.  ..+-. .++++.++..- ++.|+.+.-.||..+.
T Consensus       206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~t-qd~dE~VALEACEFwl  281 (885)
T KOG2023|consen  206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWL  281 (885)
T ss_pred             cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHH
Confidence            322221122 4567778888889999999999999999865542  11111 23455666655 7788999999999999


Q ss_pred             HhhcCC-C-CCChhhhhccHHHHHhhhcCCChH-H-HH------------------------------------------
Q 015537          228 NFCRGK-P-QPPFDQVSPALPALAHLIHSNDDE-V-LT------------------------------------------  261 (405)
Q Consensus       228 ~l~~~~-~-~~~~~~~~~~l~~L~~ll~~~d~~-v-~~------------------------------------------  261 (405)
                      .++..+ + ..-......++|.|+.-+..+|.+ + ..                                          
T Consensus       282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D  361 (885)
T KOG2023|consen  282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD  361 (885)
T ss_pred             HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence            999985 1 111233466777766533221110 0 00                                          


Q ss_pred             ----HHHHHHHHhccCChhHHHHHHhcCC----hHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 015537          262 ----DACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL  333 (405)
Q Consensus       262 ----~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~  333 (405)
                          ..-|-|...+...-+...-+....+    +|.|-..|.+.++.+++.++.++|.|+.|.-...-.-+ ..++|.|+
T Consensus       362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~  440 (885)
T KOG2023|consen  362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLL  440 (885)
T ss_pred             cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHH
Confidence                0012222222222222222333333    45555666788999999999999999987642211111 14789999


Q ss_pred             HhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          334 NLLSGNYKKSIKKEACWTVSNITAG--NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       334 ~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      .+|.+. .+-||.-+||+|+..+..  ..+ .+    .-..|.|-.+|...-+.  ..+|++.||-|.+.|
T Consensus       441 ~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~----~~f~pvL~~ll~~llD~--NK~VQEAAcsAfAtl  503 (885)
T KOG2023|consen  441 SLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RD----EYFKPVLEGLLRRLLDS--NKKVQEAACSAFATL  503 (885)
T ss_pred             HHhccC-ccceeeeeeeeHhhhhhhHhcCC-hH----hhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHH
Confidence            999999 999999999999999752  111 11    12233333333333222  247999999988765

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=1.1e-11  Score=123.26  Aligned_cols=319  Identities=17%  Similarity=0.106  Sum_probs=224.0

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +.++-+.+..+|+++..|..|+..|..+...-.+.....+  ..+.+.|.+.+.+++.+ ++..|+++++.++...+...
T Consensus       118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~  194 (1075)
T KOG2171|consen  118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNK  194 (1075)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccch
Confidence            3477788888899999999999999888532211111111  12366677777777744 99999999999887654222


Q ss_pred             HHHHhC-CChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh-CCCchhHHHHHHHHH
Q 015537          153 KVVIDH-GAVPIFVKLL----YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTL  226 (405)
Q Consensus       153 ~~~~~~-g~i~~L~~lL----~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~-~~~~~~~~~~a~~~l  226 (405)
                      ..+-.- ..+|.++..+    ..++.+....++.+|..++...+.+-...+.. ++...+.... +.-+..++..|+.+|
T Consensus       195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~i  273 (1075)
T KOG2171|consen  195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFL  273 (1075)
T ss_pred             HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHH
Confidence            222211 3456555555    45677778889999999997766543333221 4555555553 234889999999999


Q ss_pred             HHhhcCCCCC---ChhhhhccHHHHHhhhcCC--C--------------hHHHHHHHHHHHHhccCCh-hHHHHHHhcCC
Q 015537          227 SNFCRGKPQP---PFDQVSPALPALAHLIHSN--D--------------DEVLTDACWALSYLSDGTN-DKIQAVIEAGV  286 (405)
Q Consensus       227 ~~l~~~~~~~---~~~~~~~~l~~L~~ll~~~--d--------------~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~  286 (405)
                      ..++++-|..   .......+++.+..++...  |              ...-..|..+|-.++.+=. +.+-    .-+
T Consensus       274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~----p~~  349 (1075)
T KOG2171|consen  274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL----PPL  349 (1075)
T ss_pred             HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh----HHH
Confidence            9999874321   1123456777777766421  1              1123445566666654422 2211    123


Q ss_pred             hHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 015537          287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVI  366 (405)
Q Consensus       287 l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (405)
                      ++.+-.+|.+.++.-|..++.+|+.++.|........++ .+++.++..|.++ +++||..||.+++.++..-...++.-
T Consensus       350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~  427 (1075)
T KOG2171|consen  350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKK  427 (1075)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence            567777889999999999999999999999877766544 6899999999999 99999999999999998766668888


Q ss_pred             HHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhccC
Q 015537          367 MHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE  405 (405)
Q Consensus       367 ~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~~  405 (405)
                      ...-++|.|+..+.+..+.    .|+.+|+-|+-||-+|
T Consensus       428 ~~e~l~~aL~~~ld~~~~~----rV~ahAa~al~nf~E~  462 (1075)
T KOG2171|consen  428 HHERLPPALIALLDSTQNV----RVQAHAAAALVNFSEE  462 (1075)
T ss_pred             HHHhccHHHHHHhcccCch----HHHHHHHHHHHHHHHh
Confidence            8888999999999877555    7999999999998654

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=8.3e-11  Score=106.57  Aligned_cols=312  Identities=12%  Similarity=0.106  Sum_probs=231.2

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+..+++.|..++.++.......|.++.-.  .++...+.+.|++..|++++...+ ++++..++..+.|++.+ ...+.
T Consensus       305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr~  380 (791)
T KOG1222|consen  305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLRP  380 (791)
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-ccccH
Confidence            467889999999988888888888888544  577788999999999999999998 99999999999999998 77888


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      .++..|.+|.+..+|.++.-  ...|+..++.++.++. ++.++.....++.+++.+....+.++-......-.|||-+.
T Consensus       381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK  457 (791)
T ss_pred             HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence            99999999999999997533  3457788889987776 77888888888888887766666666555555556676654


Q ss_pred             CCCChhh-------------------------------------hhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCCh
Q 015537          234 PQPPFDQ-------------------------------------VSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTN  275 (405)
Q Consensus       234 ~~~~~~~-------------------------------------~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~  275 (405)
                      .+.+...                                     .-..+.-|...++. ++......++.++++|.-.+-
T Consensus       458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl  537 (791)
T KOG1222|consen  458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL  537 (791)
T ss_pred             ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence            2221110                                     00112222223333 346677888899999987777


Q ss_pred             hHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHH
Q 015537          276 DKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTV  352 (405)
Q Consensus       276 ~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L  352 (405)
                      +-.+.+.+..++|.+-..|..+  ..++....+-++|.++.. ......+..+|+++.++.+|+..+ +..+.-...+++
T Consensus       538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF  616 (791)
T KOG1222|consen  538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF  616 (791)
T ss_pred             CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence            7777777779999999999653  446777778888888753 344555667799999999998763 667777888888


Q ss_pred             HHHhcCCHHHHHHHH-HhCcHHHHHHHHhcccccchhhhHHHHHHHHH
Q 015537          353 SNITAGNREQIQVIM-HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLC  399 (405)
Q Consensus       353 ~nl~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al  399 (405)
                      ..+..+ ....+.++ +...-..|++++.... .    .||+-.-.+|
T Consensus       617 ~Q~l~H-e~tr~~miket~~~AylIDLMHDkN-~----eiRkVCDn~L  658 (791)
T KOG1222|consen  617 LQFLKH-ELTRRLMIKETALGAYLIDLMHDKN-A----EIRKVCDNAL  658 (791)
T ss_pred             HHHHHH-HHHHHHHHhhccchHHHHHHHhccc-H----HHHHHHHHHH
Confidence            888776 45566666 5666678899886553 3    4887554443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.45  E-value=4e-11  Score=110.99  Aligned_cols=280  Identities=15%  Similarity=0.119  Sum_probs=205.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      ....++..|+++|..++..|+..+..+++.. ..........-+++.+...|+++++...+.-|+.+|..+... ++.|.
T Consensus       102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~  179 (429)
T cd00256         102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF  179 (429)
T ss_pred             chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence            4577888888999999999999999998754 222111111123455666666554467888899999999988 88999


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      .+.+.++++.|+.+|+.  .+..++.+++.+++-++-+.+ ........+.++.+++++.....+.+.+.++.+|.|+..
T Consensus       180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            99999999999999986  256899999999999987665 445666788999999999888899999999999999998


Q ss_pred             CCC----C--CChhhhhccHHHHHhhhcC---CChHHHHHHHHHHH-------Hhcc------------------C-Ch-
Q 015537          232 GKP----Q--PPFDQVSPALPALAHLIHS---NDDEVLTDACWALS-------YLSD------------------G-TN-  275 (405)
Q Consensus       232 ~~~----~--~~~~~~~~~l~~L~~ll~~---~d~~v~~~a~~~l~-------~l~~------------------~-~~-  275 (405)
                      ...    .  ....++...++.++..|..   +|+++..+.-..-.       .++.                  + ++ 
T Consensus       259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~  338 (429)
T cd00256         259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK  338 (429)
T ss_pred             cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence            541    1  1122233234444444433   46665554322211       1111                  0 11 


Q ss_pred             ---hHHHHHHhc--CChHHHHHhc-CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHH
Q 015537          276 ---DKIQAVIEA--GVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC  349 (405)
Q Consensus       276 ---~~~~~~~~~--~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~  349 (405)
                         ++...+-+.  .++..|+.+| .+.++.+..-||.=||.++...+.....+-+.|+=..++.++.++ ++.||.+|.
T Consensus       339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL  417 (429)
T cd00256         339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL  417 (429)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence               233334333  4567889999 466788888999999999998888888788899999999999999 999999999


Q ss_pred             HHHHHHhc
Q 015537          350 WTVSNITA  357 (405)
Q Consensus       350 ~~L~nl~~  357 (405)
                      .++.-+..
T Consensus       418 ~avQklm~  425 (429)
T cd00256         418 LAVQKLMV  425 (429)
T ss_pred             HHHHHHHH
Confidence            99988754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.45  E-value=8e-11  Score=109.01  Aligned_cols=318  Identities=10%  Similarity=0.056  Sum_probs=224.4

Q ss_pred             HHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhc-----CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537           75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS-----GVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (405)
Q Consensus        75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-----g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~  148 (405)
                      ...+++.+.. ...++....+..+..++... ......+.+.     .....++.+|..++ .-+...|+.+|+.+....
T Consensus        55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcC
Confidence            5677777765 55788888888889998753 3334455543     56788888998877 789999999999998754


Q ss_pred             chhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC-chhHHHHHHHHH
Q 015537          149 SEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTL  226 (405)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~-~~~~~~~a~~~l  226 (405)
                      +.........-.++.|...++++ +...+..++.+|..+....+ +|..+.+.+++++|+++|.... +.+++..++.++
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            43222211112345566666653 57888899999999987766 8888888889999999996555 789999999999


Q ss_pred             HHhhcCCCCCChhhhhccHHHHHhhhcCC-ChHHHHHHHHHHHHhccCC------hhHHHHHHhcCChHHHHHhcCC--C
Q 015537          227 SNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVFPRLAEFLMH--P  297 (405)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~--~  297 (405)
                      +-|+...+........++++.++.+++.. ..++..-++.++.|+...+      ......+++.|+++.+-.+...  .
T Consensus       212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~  291 (429)
T cd00256         212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD  291 (429)
T ss_pred             HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence            99998864333333368999999999765 5788888999999998743      2344567777776655444422  2


Q ss_pred             CcchHHHHHHHHhHhh----------------------cCCh---------hhHHHHHhc--CchHHHHHhhcCCCchhH
Q 015537          298 SPSVLIPALRTVGNIV----------------------TGDD---------MQTQCVIEY--QALPCLLNLLSGNYKKSI  344 (405)
Q Consensus       298 ~~~v~~~a~~~l~nl~----------------------~~~~---------~~~~~~~~~--g~l~~L~~ll~~~~~~~v  344 (405)
                      |+++. ..+..|....                      .-++         +....+-+.  .++..|+++|..+.++.+
T Consensus       292 DedL~-edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~  370 (429)
T cd00256         292 DEDLT-DDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII  370 (429)
T ss_pred             cHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence            33322 1222221111                      0011         122223333  378899999965558888


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537          345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n  401 (405)
                      ..-||.=||.++...|.....+-+.|+=..++.++.+.+     ++||.+|..|+.-
T Consensus       371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d-----~~Vr~eAL~avQk  422 (429)
T cd00256         371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED-----PNVRYEALLAVQK  422 (429)
T ss_pred             eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC-----HHHHHHHHHHHHH
Confidence            899999999999988887777778999999999998653     3699999998764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.38  E-value=3.8e-10  Score=106.12  Aligned_cols=320  Identities=14%  Similarity=0.080  Sum_probs=216.3

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVV  155 (405)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~~~  155 (405)
                      .++.-+.+.+++....|..-..+++.+. +++...+++.|.++.++.++...+ .++.+.+.+-++...+.+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            3455556677888899999999998876 566668999999999999998654 35677677777777888888889999


Q ss_pred             HhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHH---hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          156 IDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVL---SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       156 ~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~i~---~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      ++.+.++.|+++|.+++ ..+++..+.++.++...++.. +...   ...++..+..++ ..+...+.+.-+...+++|.
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q-~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~  169 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQ-DKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSS  169 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccccc-ccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccc
Confidence            99999999999999988 889999999999998766422 2211   111233332222 21212222222222222222


Q ss_pred             CCC------------------------------------------CCChhh-h------hccHH--HHHhhhcCCChHHH
Q 015537          232 GKP------------------------------------------QPPFDQ-V------SPALP--ALAHLIHSNDDEVL  260 (405)
Q Consensus       232 ~~~------------------------------------------~~~~~~-~------~~~l~--~L~~ll~~~d~~v~  260 (405)
                      ...                                          ++.... .      .++.+  .+..++++.+...+
T Consensus       170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~  249 (678)
T KOG1293|consen  170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER  249 (678)
T ss_pred             cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence            210                                          111111 1      11222  12223333443333


Q ss_pred             HHHHHHHHHhccCCh-----------------hHHHH-------------------------------------------
Q 015537          261 TDACWALSYLSDGTN-----------------DKIQA-------------------------------------------  280 (405)
Q Consensus       261 ~~a~~~l~~l~~~~~-----------------~~~~~-------------------------------------------  280 (405)
                      ..++.++.++...+.                 ...++                                           
T Consensus       250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~  329 (678)
T KOG1293|consen  250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT  329 (678)
T ss_pred             HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence            444444333322110                 00000                                           


Q ss_pred             -------------------------------------------H------------------------------------
Q 015537          281 -------------------------------------------V------------------------------------  281 (405)
Q Consensus       281 -------------------------------------------~------------------------------------  281 (405)
                                                                 +                                    
T Consensus       330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~  409 (678)
T KOG1293|consen  330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS  409 (678)
T ss_pred             HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence                                                       0                                    


Q ss_pred             ------HhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 015537          282 ------IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (405)
Q Consensus       282 ------~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (405)
                            -...+...|+++|..++..+...++.+|.|++..-......++..|+++.+..++.+. ++.+|..+.|+|.++
T Consensus       410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l  488 (678)
T KOG1293|consen  410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP-DFNSRANSLWVLRHL  488 (678)
T ss_pred             HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-CchHHHHHHHHHHHH
Confidence                  1123556788888888888999999999999987777788899999999999999999 999999999999999


Q ss_pred             hcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          356 TAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      .-++.+..+......+...++..+-++.+    +.|++.+.-.+.|+-|
T Consensus       489 ~f~~de~~k~~~~~ki~a~~i~~l~nd~d----~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  489 MFNCDEEEKFQLLAKIPANLILDLINDPD----WAVQEQCFQLLRNLTC  533 (678)
T ss_pred             HhcchHHHHHHHHHHhhHHHHHHHHhCCC----HHHHHHHHHHHHHhhc
Confidence            99888877777777777777777766644    4799999999999987

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=3.3e-11  Score=112.94  Aligned_cols=269  Identities=14%  Similarity=0.148  Sum_probs=188.9

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH----GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~----g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~  191 (405)
                      .++|.|+++|.+++ ...++-|..+|..|+.++++.-+.-+..    -.+|.++.+.+++++.++..|+.++..+....+
T Consensus       128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence            36899999999988 6889999999999999876654432211    368999999999999999999999999876554


Q ss_pred             hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (405)
Q Consensus       192 ~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (405)
                      ..-..-++ .+++.+..+- ++.+++|++++|.++..|.+-.+......+.+++++++...++.|.+|..+||.....++
T Consensus       207 qal~~~iD-~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a  284 (885)
T KOG2023|consen  207 QALYVHID-KFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA  284 (885)
T ss_pred             HHHHHHHH-HHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence            32111111 1344444444 888999999999999999998887777778899999999999999999999999999988


Q ss_pred             cCChhHHHHHHhc---CChHHHHHhcCCCC--------------------------------------------------
Q 015537          272 DGTNDKIQAVIEA---GVFPRLAEFLMHPS--------------------------------------------------  298 (405)
Q Consensus       272 ~~~~~~~~~~~~~---~~l~~L~~lL~~~~--------------------------------------------------  298 (405)
                      +... . ..++..   .++|.|+.-+...+                                                  
T Consensus       285 eqpi-~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  285 EQPI-C-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             cCcC-c-HHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            7652 1 122221   44555544321100                                                  


Q ss_pred             ------cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hC
Q 015537          299 ------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH--VH  370 (405)
Q Consensus       299 ------~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~  370 (405)
                            +.+|..+..+|.-++.--   .+.++. -++|.|...|.+. +..+|+.+..+||.|+.|.-+   .++.  ..
T Consensus       363 dD~~~dWNLRkCSAAaLDVLanvf---~~elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~---g~~p~Lpe  434 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLANVF---GDELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQ---GFVPHLPE  434 (885)
T ss_pred             ccccccccHhhccHHHHHHHHHhh---HHHHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhh---hcccchHH
Confidence                  223433333333222100   111111 3466667777777 999999999999999876432   2222  25


Q ss_pred             cHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          371 AFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       371 ~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      ++|.|+.+|....     +-||+-.||.|+.|
T Consensus       435 Lip~l~~~L~DKk-----plVRsITCWTLsRy  461 (885)
T KOG2023|consen  435 LIPFLLSLLDDKK-----PLVRSITCWTLSRY  461 (885)
T ss_pred             HHHHHHHHhccCc-----cceeeeeeeeHhhh
Confidence            7899999997663     45999999999876

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=1.3e-11  Score=117.27  Aligned_cols=317  Identities=18%  Similarity=0.191  Sum_probs=205.1

Q ss_pred             HHHHHHhhcCCCh-HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCCc-hh
Q 015537           75 LPVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGTS-EH  151 (405)
Q Consensus        75 l~~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~-~~~~~~~~~a~~~L~ni~~~~~-~~  151 (405)
                      ++.++.....+.+ .++..++.++..++..- .|..-.--...++-.+++-... ..+..+|..|+.+|.|-..... ..
T Consensus       131 i~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF  209 (859)
T KOG1241|consen  131 IVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANF  209 (859)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence            4444444444444 47778888888885322 2221111123456666665543 3347899999999999654322 11


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      ....-.+-+++..+..-++++.+++..|+.||..|..-.-.+-..-+....+..-+..+ ++++.++.-.+...++++|.
T Consensus       210 ~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWstice  288 (859)
T KOG1241|consen  210 NNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTICE  288 (859)
T ss_pred             ccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHH
Confidence            11122223556677777889999999999999999754332322223333444455556 68899999999999999987


Q ss_pred             CCCC-------------C--Ch----hhhhccHHHHHhhhcCC-------ChHHHHHHHHHHHHhccCChhHHHHHHhcC
Q 015537          232 GKPQ-------------P--PF----DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (405)
Q Consensus       232 ~~~~-------------~--~~----~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (405)
                      ....             +  ..    .....++|.|+++|...       |..+...|-.||.-++....+.   ++. .
T Consensus       289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~  364 (859)
T KOG1241|consen  289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-H  364 (859)
T ss_pred             HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-h
Confidence            5311             1  11    11246788888888542       2345555555565554332221   111 3


Q ss_pred             ChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV  365 (405)
Q Consensus       286 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (405)
                      ++|.+-.-++++++.-+..|+.++|.+..|.+.....-+-.+++|.++.++.++ .-.++..++|+|+.++.+.++.+. 
T Consensus       365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~-  442 (859)
T KOG1241|consen  365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAII-  442 (859)
T ss_pred             hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcc-
Confidence            456666677899999999999999999999887777677779999999999987 889999999999999987664332 


Q ss_pred             HHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          366 IMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       366 l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                        ..-..+.++..+..+-+.  +|.+-.+++||+-++.
T Consensus       443 --n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~La  476 (859)
T KOG1241|consen  443 --NQELLQSKLSALLEGLND--EPRVASNVCWAFISLA  476 (859)
T ss_pred             --cHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHH
Confidence              222223333333222222  4799999999998874

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.35  E-value=5.7e-11  Score=117.15  Aligned_cols=255  Identities=20%  Similarity=0.199  Sum_probs=147.0

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      ..++.+++.+.+.+...+.-+.-.+..+...+  +..-.+    +++.+.+=|.+++ +.++..|+++|++++.  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            46778888888888877777777777665332  111111    3666767777777 7888888888888763  4433


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      .     .+++.+..++.++++.||..|+.++..+...+|..   +... .++.+..++ .++++.+...|+.++..+ +.
T Consensus       113 ~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 E-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             H-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             h-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            3     24677777888888888888888888887655532   2122 466777777 777788888888888887 22


Q ss_pred             CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                      .+..........++.|..++...++..+..++..+..++...+.....   ..+++.+..++++.++.+...++.++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            111111333455555555556667777777777777766554433311   12334444444444444444444444443


Q ss_pred             hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      ....+      .-..+++.|..++.++ ++.+|-.++.+|..++.
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~  296 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQ  296 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCC
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhc
Confidence            32111      1112344444444443 44444444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.33  E-value=2.7e-10  Score=118.02  Aligned_cols=230  Identities=18%  Similarity=0.161  Sum_probs=147.7

Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 015537          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (405)
Q Consensus       114 ~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~  193 (405)
                      ....++.|+..|.+++ +.+|..|+.+|+.+..           .++++.|...|.++++.++..|+.+|+.+....+. 
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-  685 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-  685 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-
Confidence            4456889999999888 9999999999998753           25789999999999999999999999888532111 


Q ss_pred             HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC--------Ch----hhh-----hccHHHHHhhhcCCC
Q 015537          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP--------PF----DQV-----SPALPALAHLIHSND  256 (405)
Q Consensus       194 ~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--------~~----~~~-----~~~l~~L~~ll~~~d  256 (405)
                               .+.+...| .++++.++..++.+|..+....+..        ..    ..+     -+..+.|..++.+++
T Consensus       686 ---------~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~  755 (897)
T PRK13800        686 ---------APALRDHL-GSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDEN  755 (897)
T ss_pred             ---------hHHHHHHh-cCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCC
Confidence                     12333444 3445555555555554432110000        00    000     000122334445555


Q ss_pred             hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhh
Q 015537          257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL  336 (405)
Q Consensus       257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll  336 (405)
                      +.|+..++.+|+.+.....         ..++.|..++.++++.++..|+.+|+.+....          ...+.+...+
T Consensus       756 ~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL  816 (897)
T PRK13800        756 REVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAAL  816 (897)
T ss_pred             HHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHh
Confidence            5555555555555432211         12567788888888888888888888874321          1224577888


Q ss_pred             cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          337 SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       337 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      .++ ++.||..|+++|+.+..  +         ..++.|+.+|.+.     .+.||++|.++|+.+
T Consensus       817 ~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~-----~~~VR~~A~~aL~~~  865 (897)
T PRK13800        817 RAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDP-----HLDVRKAAVLALTRW  865 (897)
T ss_pred             cCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCC-----CHHHHHHHHHHHhcc
Confidence            888 88999999999987731  2         2347888888654     247999999999864

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.32  E-value=9e-11  Score=115.77  Aligned_cols=288  Identities=15%  Similarity=0.171  Sum_probs=207.2

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+..+.+.+.++++..+-.|++++.++..    +   .+. ..+++.+.+++.+++ +.+|..|+.++..+...+++...
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~----~---~~~-~~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRT----P---EMA-EPLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-S----H---HHH-HHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhcc----c---chh-hHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence            46677778888899999999999988852    1   222 225888999999988 99999999999999887665322


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                         .. .++.+..+|.++++.++..|+.++..+ ...+.....+ -...+..|.+++ ...++-.+..++.++..++...
T Consensus       151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~  223 (526)
T PF01602_consen  151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPME  223 (526)
T ss_dssp             ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSS
T ss_pred             ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCC
Confidence               22 589999999999999999999999999 2222111111 111334444444 7789999999999999887664


Q ss_pred             CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~  313 (405)
                      +.....  ..+++.+..++++.++.|...++.++..+.....      .-..+++.+..+|.++++.++..++..|..++
T Consensus       224 ~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~  295 (526)
T PF01602_consen  224 PEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLA  295 (526)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred             hhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence            211111  4688888888888899999999999998876443      22345789999999999999999999999999


Q ss_pred             cCChhhHHHHHhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537          314 TGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY  392 (405)
Q Consensus       314 ~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr  392 (405)
                      ...+.    .+.  .....+..+. ++ +..+|..+.-+|.+++.  +..+..     +++.|...+....+    ++++
T Consensus       296 ~~~~~----~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d----~~~~  357 (526)
T PF01602_consen  296 QSNPP----AVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSD----PDFR  357 (526)
T ss_dssp             CHCHH----HHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC------HHHH
T ss_pred             cccch----hhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccc----hhhh
Confidence            76621    222  2233344555 56 89999999999999973  454554     46677777733322    3689


Q ss_pred             HHHHHHHhhhc
Q 015537          393 KLAIWLCLVTC  403 (405)
Q Consensus       393 ~~A~~al~n~~  403 (405)
                      +++.-+|+.+|
T Consensus       358 ~~~i~~I~~la  368 (526)
T PF01602_consen  358 RELIKAIGDLA  368 (526)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            99999998765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.31  E-value=3.2e-10  Score=101.46  Aligned_cols=280  Identities=14%  Similarity=0.091  Sum_probs=204.9

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      -+.+++.+..+|......+.+.+.++.+.. +.........-....+...++++.+++-..-|++||.-+... ++.|..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence            467788888888888888889999887765 333221111112344555566644477888899999999998 899999


Q ss_pred             HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          155 VIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      ++...++..++..+.+  .+-.++.+.+.|++-|.-.++. .+.+...+.++.|..++..+..+.|.+-++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999998843  4778999999999999876664 466677888999999998888999999999999999988


Q ss_pred             CCCCC------hhhhhccHHHHHhhhc---CCChHHHHHHHHHHHHhcc---------------------CCh-------
Q 015537          233 KPQPP------FDQVSPALPALAHLIH---SNDDEVLTDACWALSYLSD---------------------GTN-------  275 (405)
Q Consensus       233 ~~~~~------~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~l~~l~~---------------------~~~-------  275 (405)
                      .+...      ..++..-++..++.|.   -+|+++..+.-..-..|-.                     .++       
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            64222      1222333333344443   2466665554333222211                     011       


Q ss_pred             --hHHHHHHhc--CChHHHHHhcCCC-CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHH
Q 015537          276 --DKIQAVIEA--GVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW  350 (405)
Q Consensus       276 --~~~~~~~~~--~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~  350 (405)
                        +++..+.+.  .++..|+.+|... +|.+..-||.=||..+...++....+.+.|+=+.++++++++ ++.||.+|..
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl  431 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL  431 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence              223333333  5678899999654 588889999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHhcC
Q 015537          351 TVSNITAG  358 (405)
Q Consensus       351 ~L~nl~~~  358 (405)
                      ++-.+..+
T Consensus       432 avQ~lm~~  439 (442)
T KOG2759|consen  432 AVQKLMVH  439 (442)
T ss_pred             HHHHHHhh
Confidence            88777543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=4.5e-09  Score=105.07  Aligned_cols=312  Identities=14%  Similarity=0.163  Sum_probs=214.1

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhccCC--CCchHHHHhcCcHHHHHHHh----cCCCCHHHHHHHHHHHHHHhcCCch
Q 015537           77 VMVAGVWSNDSGVQYECTTQFRKLLSIER--SPPIEEVIRSGVVPRFVEFL----LREDYPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~~~~g~l~~Li~lL----~~~~~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      .+.+.+...+..++..|++++..++...+  ....+.+.  ..+|.++..+    ..++ .+.-..++.+|..++...+.
T Consensus       163 lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d-~~~a~~~l~~l~El~e~~pk  239 (1075)
T KOG2171|consen  163 LFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGD-DDAAKSALEALIELLESEPK  239 (1075)
T ss_pred             HHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccc-hHHHHHHHHHHHHHHhhchH
Confidence            34445555555599999999887765432  11122232  3356555544    4555 66778899999999988777


Q ss_pred             hHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHhhhC---C----------
Q 015537          151 HTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNG---Q----------  213 (405)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~L~~~l~~---~----------  213 (405)
                      .....+. .+|+.-+.+..+.  ++.+|..|+.+|..++..-|.........  ..++.++.++..   +          
T Consensus       240 ~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d  318 (1075)
T KOG2171|consen  240 LLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD  318 (1075)
T ss_pred             HHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence            6665554 4677777777763  78899999999999987744332222221  124444444411   0          


Q ss_pred             -C-chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHH
Q 015537          214 -P-KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA  291 (405)
Q Consensus       214 -~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~  291 (405)
                       . ...-...+..++-.++.+-+..  .....+++.+-.++.+.+..-+..++.+|+-++.++.+.....+ ..+++.++
T Consensus       319 ed~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl  395 (1075)
T KOG2171|consen  319 EDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVL  395 (1075)
T ss_pred             cccccCcHHHHHHHHHHHHhcCChh--hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHH
Confidence             0 1234667777777777764322  22346778888899999999999999999999999987655433 36788899


Q ss_pred             HhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 015537          292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQVIMHVH  370 (405)
Q Consensus       292 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~  370 (405)
                      ..|.++++.||..||.++|-+++.-....+.-....+++.|+..+.+..+++++..|+-++-|+....+ +.+..-+ .+
T Consensus       396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~  474 (1075)
T KOG2171|consen  396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DG  474 (1075)
T ss_pred             hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HH
Confidence            999999999999999999999976555555555667888999999998788999999999999987533 3333222 24


Q ss_pred             cHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537          371 AFSIIVAFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       371 ~i~~L~~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                      ++..++..|.....    +.||..|.-+|+
T Consensus       475 lm~~~l~~L~~~~~----~~v~e~vvtaIa  500 (1075)
T KOG2171|consen  475 LMEKKLLLLLQSSK----PYVQEQAVTAIA  500 (1075)
T ss_pred             HHHHHHHHHhcCCc----hhHHHHHHHHHH
Confidence            44434444444333    479998888876

>PTZ00429 beta-adaptin; Provisional

Probab=99.28  E-value=1.4e-08  Score=101.29  Aligned_cols=257  Identities=14%  Similarity=0.107  Sum_probs=180.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .++.+++.+.++|...+.-+...+.+++..+  +..-.+    +++.|.+=+.+++ |.+|..|++++++|-.  ++...
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e  139 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE  139 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence            5789999999999999988888888885432  221111    3778888888888 9999999999999855  33222


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                           -+++.+.+.+.+.++.|+..|+.++.++...++   +.+.+.|.++.|..++ .+.++.+..+|+.+|..++...
T Consensus       140 -----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        140 -----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence                 245677888899999999999999999987666   3444567788888887 8999999999999999998765


Q ss_pred             CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~  313 (405)
                      +. ......+.+..++..+..-++..+...+.+|....-.+....     ..++..+...|++.++.|...|++++-++.
T Consensus       211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            43 244445666677777777778888888888876543322222     245788889999999999999999998887


Q ss_pred             cCC-hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          314 TGD-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       314 ~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      ... +.....+. ..+-..++.++ ++ ++.++-.+...|.-+..
T Consensus       285 ~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        285 SRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLV  326 (746)
T ss_pred             CcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHH
Confidence            542 22222111 11224445543 33 45555555544444433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=7.9e-10  Score=108.61  Aligned_cols=278  Identities=18%  Similarity=0.217  Sum_probs=217.4

Q ss_pred             hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH
Q 015537           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (405)
Q Consensus        87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~  166 (405)
                      -..|+.|..+.-...+.++.|+-+       +|.+++.|-+.   --+..|+..|+....-.+-....-+.-|+.|++++
T Consensus       450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK  519 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK  519 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence            467888888888887777777766       77777777653   34788899999988876887888888899999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC--chhHHHHHHHHHHHhhcCCCCCChhhh-hc
Q 015537          167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQV-SP  243 (405)
Q Consensus       167 lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~  243 (405)
                      +|+++-.+++...+.+...|..-++.|+-.+++.++-...+..|..++  +++-+..+++.|+.++++.+..+.... .+
T Consensus       520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~  599 (1387)
T KOG1517|consen  520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN  599 (1387)
T ss_pred             HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence            999999999999999999987766878888888888888888884423  568889999999999999755444443 67


Q ss_pred             cHHHHHhhhcCC-ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC----Chh
Q 015537          244 ALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDM  318 (405)
Q Consensus       244 ~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~----~~~  318 (405)
                      ++...+..+.++ .+-.+..+|-+|+.|-.+.++..=.=...++.+.|+.+|+++-++||.+|+.+||.+..+    .++
T Consensus       600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde  679 (1387)
T KOG1517|consen  600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE  679 (1387)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence            778888888875 688899999999999876655433345568889999999999999999999999999975    344


Q ss_pred             hHHHH------------HhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 015537          319 QTQCV------------IEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII  375 (405)
Q Consensus       319 ~~~~~------------~~~g~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  375 (405)
                      ++..+            ++..+.   -.++.+++.+ .+-++.+.+-+|+.+..+...+...+.-....|..
T Consensus       680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~  750 (1387)
T KOG1517|consen  680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPES  750 (1387)
T ss_pred             hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccch
Confidence            43333            222222   3677788888 99999999999999998888777666554444443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=9.5e-10  Score=105.97  Aligned_cols=263  Identities=16%  Similarity=0.156  Sum_probs=209.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH-HhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTN-IASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~n-i~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~  195 (405)
                      +..|++-|....++..|.+|+.-|+. +..++.+....+--.-.+|.|+.+|++ .+.+|.-+|+.+|.+++.-.|..-.
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            55566666655347888888877776 444655555545445679999999998 5889999999999999988887778


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC-C
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-T  274 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~  274 (405)
                      .+++.++|+.|+..|..-...++.+.++.+|-.+++.+|.  ...-.|.+...+.+|.=-...++..|+.+.+|+|.. .
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~--AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK--AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH--HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8899999999999997888999999999999999998643  233357777777766544567889999999999865 3


Q ss_pred             hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC---ChhhHHHHHhcCchHHHHHhhcCCC---chhHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG---DDMQTQCVIEYQALPCLLNLLSGNY---KKSIKKEA  348 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~---~~~~~~~~~~~g~l~~L~~ll~~~~---~~~v~~~a  348 (405)
                      ++....+++  .+|.|..+|++.+....+.++.++..++.+   .+...+.+...|++.-...++.-.+   +..+.-..
T Consensus       327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v  404 (1051)
T KOG0168|consen  327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV  404 (1051)
T ss_pred             CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence            343444553  589999999999999999999999999854   4566777889999999999998662   33556667


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccc
Q 015537          349 CWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLH  384 (405)
Q Consensus       349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~  384 (405)
                      ...|+-++.+++.....+...++...|.++|..+..
T Consensus       405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~  440 (1051)
T KOG0168|consen  405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK  440 (1051)
T ss_pred             HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence            788999999999999999999999999999987643

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.8e-09  Score=95.52  Aligned_cols=183  Identities=16%  Similarity=0.210  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL  210 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l  210 (405)
                      .+-+..|+.-|..++.. -++...++..|+...++.++++++..+++.|+|+|+..+..+|.++..+++.|++..|+..+
T Consensus        97 le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l  175 (342)
T KOG2160|consen   97 LEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL  175 (342)
T ss_pred             HHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence            67788888888888887 77788899999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCchhHHHHHHHHHHHhhcCCCCCChh-hhhccHHHHHhhhcC--CChHHHHHHHHHHHHhccCChhHHHHHHhcCCh
Q 015537          211 NGQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF  287 (405)
Q Consensus       211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l  287 (405)
                      ..+.+..++..++.+++.+.++.+..... ...++...|...+++  .+...+..++..++++..........+...+..
T Consensus       176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~  255 (342)
T KOG2160|consen  176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ  255 (342)
T ss_pred             ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence            87788899999999999999998444333 335668899999988  568888999999999987766655555555777


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          288 PRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       288 ~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      ..+..+....+.++...++.++-....
T Consensus       256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  256 RVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            777777788888889888888776664

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=7.8e-10  Score=97.77  Aligned_cols=186  Identities=22%  Similarity=0.220  Sum_probs=155.0

Q ss_pred             cCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChH
Q 015537           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (405)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~  162 (405)
                      .+.+.+.+..|+..|..++-  +-.+...++..|++..++.++++++ +.+|..|+|+|+.++.++|..+..+++.|+++
T Consensus        93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~  169 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS  169 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence            35678889999999988863  2566778899999999999999998 99999999999999999999999999999999


Q ss_pred             HHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC-CchhHHHHHHHHHHHhhcCCCCCChhh
Q 015537          163 IFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (405)
Q Consensus       163 ~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~  240 (405)
                      .|+..|.++ +..++..|+.+++.+..+.++..+.+...++...|.+.+... .+..+++.++..+..|...........
T Consensus       170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~  249 (342)
T KOG2160|consen  170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA  249 (342)
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            999999875 556789999999999999999999999999999999999543 689999999999999998874333333


Q ss_pred             h-hccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537          241 V-SPALPALAHLIHSNDDEVLTDACWALSYLS  271 (405)
Q Consensus       241 ~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (405)
                      . .+....+..+..+.+.++...++.++..+.
T Consensus       250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  250 SSLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             HHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            3 344445666666677888888877776654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=7.8e-10  Score=105.50  Aligned_cols=321  Identities=17%  Similarity=0.147  Sum_probs=218.3

Q ss_pred             HHHHHHhhcC--CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           75 LPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        75 l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +..++...+.  ++..+++.|+.+|.+-+-..+...-.+.-..-++...++.-++++ .+++..|..||..|..-..+..
T Consensus       174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m  252 (859)
T KOG1241|consen  174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM  252 (859)
T ss_pred             HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555554  456889999999988775542122222223334566667767777 8999999999999999877888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH----HH-----------H---HhcCChHHHHHhhhC-C
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DL-----------V---LSQGGLVPLLAQLNG-Q  213 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~----~~-----------i---~~~~~i~~L~~~l~~-~  213 (405)
                      ...+....++.-+.-+++++++|.-+++...+++|.+.-...    +.           +   .-.+.+|.|+++|.+ +
T Consensus       253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd  332 (859)
T KOG1241|consen  253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD  332 (859)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence            888877788888888899999999999999999984321100    00           0   012456778888753 1


Q ss_pred             -----CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH
Q 015537          214 -----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (405)
Q Consensus       214 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  288 (405)
                           .+-.....+..||.-+++...+   ..+..++|.+-.-++++|..-+..+.-+++.+..+.+...-.-+-.+++|
T Consensus       333 e~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp  409 (859)
T KOG1241|consen  333 EDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP  409 (859)
T ss_pred             CCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence                 1234556666666666554321   23347888888888999999999999999999988776555556668899


Q ss_pred             HHHHhcCCCCcchHHHHHHHHhHhhcCChhhHH-HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH--
Q 015537          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ-CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV--  365 (405)
Q Consensus       289 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~--  365 (405)
                      .++.++.++...++..+.|++|.++.+.++... ...-.+.++.++.-|.+.  |++...+||++.+++.+-++....  
T Consensus       410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~Laea~~eA~~s~~  487 (859)
T KOG1241|consen  410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLAEAAYEAAVSNG  487 (859)
T ss_pred             HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999988888999999999999987664332 233446778888888764  799999999999998422211100  


Q ss_pred             ---HHHhCcHHHHHHHHhccccc--chhhhHHHHHHHHHhhh
Q 015537          366 ---IMHVHAFSIIVAFFFMFLHF--FFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       366 ---l~~~~~i~~L~~lL~~~~~~--~~~~~vr~~A~~al~n~  402 (405)
                         ... ..++.++.-|-...+.  ..+...|-.|.-||+-.
T Consensus       488 qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl  528 (859)
T KOG1241|consen  488 QTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL  528 (859)
T ss_pred             CCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence               001 2333333333222222  13457899888888743

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=2.3e-09  Score=97.45  Aligned_cols=300  Identities=16%  Similarity=0.077  Sum_probs=218.4

Q ss_pred             hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH
Q 015537           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (405)
Q Consensus        87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~  166 (405)
                      ..+..-|+..|.+++..  ...-..+...+++..|++.|+.++ .++.......|..++-. .+++..+.+.|++..|++
T Consensus       277 eqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~k  352 (791)
T KOG1222|consen  277 EQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLK  352 (791)
T ss_pred             HHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHH
Confidence            44555567777787632  233345888999999999999988 78888888888888776 678888999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHH
Q 015537          167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP  246 (405)
Q Consensus       167 lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  246 (405)
                      ++...+++++...+..+.|++-++. .|...+..|.+|.+..++.++...   ..|+..++.++-.+..........+++
T Consensus       353 lfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci~  428 (791)
T KOG1222|consen  353 LFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCIK  428 (791)
T ss_pred             hcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHHH
Confidence            9999999999999999999998876 667777889999999999544433   345556667766644333444478888


Q ss_pred             HHHhhh-cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhHhhcCChhhHHHHH
Q 015537          247 ALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI  324 (405)
Q Consensus       247 ~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~  324 (405)
                      .+.+.+ ...+.+|-.+.+....+++... .+.+.+++-.++..|+..- .+.++ +   -...+.||+++.......++
T Consensus       429 ~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniSqHeg~tqn~Fi  503 (791)
T KOG1222|consen  429 LLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNISQHEGATQNMFI  503 (791)
T ss_pred             HHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch-H---HHHHHHHhhhccchHHHHHH
Confidence            877654 4456666666666556776433 3456677766677776654 44443 2   34566778877664444455


Q ss_pred             hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       325 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      +  .+.-|..++....+...--++..+++|++..+-+-.+.+-+.+++|-+-..|..+-.+   .++.-+...++|.+.|
T Consensus       504 d--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~e---ddLvL~~vi~~GT~a~  578 (791)
T KOG1222|consen  504 D--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADE---DDLVLQIVIACGTMAR  578 (791)
T ss_pred             H--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccc---hhhhhHHHHHhhhhhh
Confidence            4  3556667776665677888999999999875555445566899999999999877655   3688888888887765

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.20  E-value=2.1e-08  Score=94.70  Aligned_cols=296  Identities=15%  Similarity=0.193  Sum_probs=206.2

Q ss_pred             hhcCHHHHHHhhcCCC--hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537           71 KLENLPVMVAGVWSND--SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (405)
Q Consensus        71 ~~~~l~~l~~~l~s~~--~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~  148 (405)
                      +.+.++.++..+..++  .+.+...+..+..+..++ ......+.+.+.++.+.++|+.++...++...+.++.++.+.+
T Consensus        49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~  127 (678)
T KOG1293|consen   49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS  127 (678)
T ss_pred             hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence            4577899999888765  455555666677777776 7778899999999999999998875577888888888887765


Q ss_pred             chhH-------------------------------------------HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-
Q 015537          149 SEHT-------------------------------------------KVVIDHGAVPIFVKLLYSPSDDVREQAVWALG-  184 (405)
Q Consensus       149 ~~~~-------------------------------------------~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~-  184 (405)
                      +.+-                                           ....+.|+.+.+.-++...+...+.+|+.+++ 
T Consensus       128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr  207 (678)
T KOG1293|consen  128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSR  207 (678)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhc
Confidence            3211                                           11222333344433444445677888888888 


Q ss_pred             --HhhCCChhhHHH----HHhcCChHH-HHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCC-------hh----------
Q 015537          185 --NIAGDSPRCRDL----VLSQGGLVP-LLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP-------FD----------  239 (405)
Q Consensus       185 --nl~~~~~~~~~~----i~~~~~i~~-L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~-------~~----------  239 (405)
                        ++...++.....    ....|+.+. .+..+.++++...+..++.++.++++.. ....       ..          
T Consensus       208 ~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~  287 (678)
T KOG1293|consen  208 GDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYN  287 (678)
T ss_pred             cceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHh
Confidence              776666544322    223333332 3333335555555555555555554433 0000       00          


Q ss_pred             --------------------------------------------------------------------------------
Q 015537          240 --------------------------------------------------------------------------------  239 (405)
Q Consensus       240 --------------------------------------------------------------------------------  239 (405)
                                                                                                      
T Consensus       288 ~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i  367 (678)
T KOG1293|consen  288 CIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEI  367 (678)
T ss_pred             hheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcch
Confidence                                                                                            


Q ss_pred             ------------------------------------------------hhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537          240 ------------------------------------------------QVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (405)
Q Consensus       240 ------------------------------------------------~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (405)
                                                                      ....+...+++++..++..|...++.+|.|+.
T Consensus       368 ~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV  447 (678)
T KOG1293|consen  368 SLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV  447 (678)
T ss_pred             hHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence                                                            01344555677777777888888999999998


Q ss_pred             cCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcC-chHHHHHhhcCCCchhHHHHHHH
Q 015537          272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACW  350 (405)
Q Consensus       272 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g-~l~~L~~ll~~~~~~~v~~~a~~  350 (405)
                      -........++..|+++.+..++.+.++.++..++|+|.+++.+.++..+...... ....+..+.+++ ++.|++.+.-
T Consensus       448 mefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fq  526 (678)
T KOG1293|consen  448 MEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQ  526 (678)
T ss_pred             hhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHH
Confidence            76666677899999999999999999999999999999999998886555444333 455666777777 9999999999


Q ss_pred             HHHHHhcCCHHHHHHHHH
Q 015537          351 TVSNITAGNREQIQVIMH  368 (405)
Q Consensus       351 ~L~nl~~~~~~~~~~l~~  368 (405)
                      .+.|++.++.+.++.+++
T Consensus       527 llRNl~c~~~~svdfll~  544 (678)
T KOG1293|consen  527 LLRNLTCNSRKSVDFLLE  544 (678)
T ss_pred             HHHHhhcCcHHHHHHHHH
Confidence            999999998888888875

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.17  E-value=1.5e-08  Score=90.94  Aligned_cols=319  Identities=11%  Similarity=0.038  Sum_probs=223.9

Q ss_pred             CHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHH-------hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015537           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI-------RSGVVPRFVEFLLREDYPQLQFEAAWALTNIA  145 (405)
Q Consensus        74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~-------~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~  145 (405)
                      .+..++..+... .++....++..+..+++.+  +....++       ..-.-+.++.+|..++ .-+...+.|+++.++
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence            457777777753 4677778888888998764  3332222       2234678899999888 788888999999987


Q ss_pred             cCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh-hCCCchhHHHHHH
Q 015537          146 SGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNAT  223 (405)
Q Consensus       146 ~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l-~~~~~~~~~~~a~  223 (405)
                      .............-....|-..+++ .+++-...++.||..+...++ +|..+....++..++..+ ++..+..++...+
T Consensus       143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            7533322110000112344445555 677888889999999997766 788888888888898888 5556899999999


Q ss_pred             HHHHHhhcCCCCCChhhhhccHHHHHhhhcCC-ChHHHHHHHHHHHHhccCCh------hHHHHHHhcCChHHHHHhcC-
Q 015537          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVFPRLAEFLM-  295 (405)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~L~~lL~-  295 (405)
                      .|++.|+.+++........+.++.|..++++. .+.|..-++.++.|+++..+      +.+..++..++.+.+-.+.. 
T Consensus       222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r  301 (442)
T KOG2759|consen  222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER  301 (442)
T ss_pred             HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence            99999998864443344468899999999765 57888889999999998774      44566777777666555543 


Q ss_pred             -CCCcchHHHHHHHH-------hHhhcC--------------Ch---------hhHHHHHhc--CchHHHHHhhcCCCch
Q 015537          296 -HPSPSVLIPALRTV-------GNIVTG--------------DD---------MQTQCVIEY--QALPCLLNLLSGNYKK  342 (405)
Q Consensus       296 -~~~~~v~~~a~~~l-------~nl~~~--------------~~---------~~~~~~~~~--g~l~~L~~ll~~~~~~  342 (405)
                       ..|+++....-..-       -.+++.              ++         +....+.+.  .++..|+++|.++.+|
T Consensus       302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp  381 (442)
T KOG2759|consen  302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP  381 (442)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence             23433322111111       111111              11         122233332  4889999999998679


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537          343 SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n  401 (405)
                      .+-.-||.-|+....+.|+....+.+.|+=..++++|++.+     |+||-+|.-|+-.
T Consensus       382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d-----~~Vry~ALlavQ~  435 (442)
T KOG2759|consen  382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED-----PEVRYHALLAVQK  435 (442)
T ss_pred             ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC-----chHHHHHHHHHHH
Confidence            99999999999999999998888889999999999998763     4699999988654

>PTZ00429 beta-adaptin; Provisional

Probab=99.17  E-value=5.1e-08  Score=97.38  Aligned_cols=274  Identities=17%  Similarity=0.104  Sum_probs=193.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+.++-+.|++.+...+..|++.+..+.... .+.      +.+.+..++++.+.+ ..++.-+-..+.+.+...++.. 
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela-  103 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA-  103 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH-
Confidence            3567788888888888888887554444332 111      224677788888887 8999999999999988666543 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                       +   -++..|.+=+.++++.++-.|+.++++|-.  +..    ++ -.+.++.+.+ .+.++-|++.|+.++..+....
T Consensus       104 -l---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i----~e-~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~  171 (746)
T PTZ00429        104 -L---LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSV----LE-YTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD  171 (746)
T ss_pred             -H---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHH----HH-HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence             2   246788888889999999999999999853  211    12 1456677777 8899999999999999998875


Q ss_pred             CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~  313 (405)
                      |..  ....+.++.|..++.+.|+.|..+|+.+|..+...++....  ...+.+..++..|..-++-.+...+.+|....
T Consensus       172 pel--v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~  247 (746)
T PTZ00429        172 MQL--FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR  247 (746)
T ss_pred             ccc--ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence            532  22356788899999999999999999999999866554332  23455677777776666777777777775543


Q ss_pred             cCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHH
Q 015537          314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFF  379 (405)
Q Consensus       314 ~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL  379 (405)
                      ..++...     ..++..+...|++. ++.|.-+|+.++.++... +++.+..+. ..+-++|+.++
T Consensus       248 P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~  307 (746)
T PTZ00429        248 PSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLS  307 (746)
T ss_pred             CCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh
Confidence            2222222     24677788889898 899999999999998753 233333322 22334555554

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.09  E-value=3.6e-09  Score=96.52  Aligned_cols=232  Identities=17%  Similarity=0.196  Sum_probs=161.5

Q ss_pred             hHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHh------cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          161 VPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       161 i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~------~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      ...++.+|+  ++++++....+..+..+..+++...+.+..      .....++++++ ..+|..+...++..+..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            444455554  368899999999999999888877666654      23578889877 777999999999999999988


Q ss_pred             CCCCChhhhhccHHHHHhhhc----CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-----CC--CCcch
Q 015537          233 KPQPPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-----MH--PSPSV  301 (405)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-----~~--~~~~v  301 (405)
                      .+........+.++.++..+.    +++.+++.-++.++..+.. .+.....+.+.|+++.+..+|     .+  ....+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            755555433455566555554    4556778889999999984 555566788899999999999     22  24477


Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHh
Q 015537          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQVIMHVHAFSIIVAFFF  380 (405)
Q Consensus       302 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~lL~  380 (405)
                      +..++.++.-++. ++.....+.+.++++.|..++......+|-+-+..++.|+....++ .+..++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            8889999988875 5556667888889999999999887899999999999999975443 6788888888888777665


Q ss_pred             cccccchhhhHHHHHHHH
Q 015537          381 MFLHFFFGAIIYKLAIWL  398 (405)
Q Consensus       381 ~~~~~~~~~~vr~~A~~a  398 (405)
                      ..-.   ++++.....+.
T Consensus       294 rk~~---Dedl~edl~~L  308 (312)
T PF03224_consen  294 RKWS---DEDLTEDLEFL  308 (312)
T ss_dssp             S--S---SHHHHHHHHHH
T ss_pred             CCCC---CHHHHHHHHHH
Confidence            4322   34777665554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.8e-07  Score=90.11  Aligned_cols=322  Identities=18%  Similarity=0.186  Sum_probs=237.2

Q ss_pred             cCHHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCc-
Q 015537           73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTS-  149 (405)
Q Consensus        73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~-~~~~~~~~a~~~L~ni~~~~~-  149 (405)
                      +.|+.|+.-+.+.. .+.+..|+..|..+..    .....+ -..+++.|++.|..+ .++++...++..+.++....+ 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            57899999888754 7889999999988742    233334 444599999999764 348999999999999888652 


Q ss_pred             -----hhH----------HHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHh-cCChHHHHHhhh
Q 015537          150 -----EHT----------KVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLS-QGGLVPLLAQLN  211 (405)
Q Consensus       150 -----~~~----------~~~~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~-~~~i~~L~~~l~  211 (405)
                           +.+          +.++ ..+.|..|+..+...|-.||..++..|.++... +++.++.++. .-++..++.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 111          2233 457899999999999999999999999998754 4567776654 45789999999 


Q ss_pred             CCCchhHHHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCC---C-hHHHHHHHHHHHHhccCChhHHHHHHhcCC
Q 015537          212 GQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (405)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (405)
                      .+..+.++..++..|..|.++.+... ......++..|..++...   | .-|..+++..+.+|...+..+.+.+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            88888899999999999999985544 344588999999998653   3 358889999999999998888899999999


Q ss_pred             hHHHHHhcCC---CCcc----------hHHHHHHHHhHhhcCC-h-----hhHHHHHhcCchHHHHHhhcCC-CchhHHH
Q 015537          287 FPRLAEFLMH---PSPS----------VLIPALRTVGNIVTGD-D-----MQTQCVIEYQALPCLLNLLSGN-YKKSIKK  346 (405)
Q Consensus       287 l~~L~~lL~~---~~~~----------v~~~a~~~l~nl~~~~-~-----~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~  346 (405)
                      +|+|..+|.-   .+.+          -...++.++..++.-. .     .....+..++++..|..++-++ -..+|+.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            9999988842   2211          1234666666666422 1     2224567789999999999887 3678999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC------cHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537          347 EACWTVSNITAGNREQIQVIMHVH------AFSIIVAFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~------~i~~L~~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                      ++..+++++..|+......+.+-.      -.|.++-++-+..++...+..|-...|++-
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~  395 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFR  395 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHH
Confidence            999999999998877666665321      234444444444444444577777666653

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.07  E-value=1.4e-08  Score=94.24  Aligned_cols=311  Identities=16%  Similarity=0.111  Sum_probs=197.8

Q ss_pred             HHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHH-hcCc-H-HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           76 PVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVI-RSGV-V-PRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        76 ~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~-l-~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      ..++.....+. ......++..+.+.+-.. .|  +.++ .++. + .....-++...+..+|..|+.+|.+-+..   .
T Consensus       136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~P--e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v  209 (858)
T COG5215         136 EEMVRNVGDEQPVSGKCESLGICGYHCESE-AP--EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---V  209 (858)
T ss_pred             HHHHHhccccCchHhHHHHHHHHHHHhhcc-CH--HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---H
Confidence            33444444433 467788888888886543 33  3333 2332 2 33344556555578999999999883221   1


Q ss_pred             HHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537          152 TKVVIDH----GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (405)
Q Consensus       152 ~~~~~~~----g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~  227 (405)
                      +..+-..    -+++..+..-+.++.+++..+..||..|..-.-.+-...++. .+-.+.....++++.++...+...++
T Consensus       210 ~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~qavEfWs  288 (858)
T COG5215         210 QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQAVEFWS  288 (858)
T ss_pred             HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            1111111    234455556677899999999999999875433333344443 33333333338899999999999999


Q ss_pred             HhhcCCCCCCh-----------------hhhhccHHHHHhhhcC-------CChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537          228 NFCRGKPQPPF-----------------DQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIE  283 (405)
Q Consensus       228 ~l~~~~~~~~~-----------------~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  283 (405)
                      .+|........                 ..+.+++|.|+.+|..       +|..+-..|..||--++....+   .+++
T Consensus       289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~  365 (858)
T COG5215         289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR  365 (858)
T ss_pred             HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH
Confidence            99876421111                 1135688999999964       2344555566666555533322   2332


Q ss_pred             cCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 015537          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (405)
Q Consensus       284 ~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (405)
                      . ++..+=+-+.++++.-+..++.++|.+..|.....-.-+-...+|.+...+.++ .-.++..++|+++.|+.+-+..+
T Consensus       366 p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i  443 (858)
T COG5215         366 P-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMII  443 (858)
T ss_pred             H-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhc
Confidence            2 455555667888999999999999999998876555555568999999999987 88999999999999975433332


Q ss_pred             HHHHHhCcHHHHHHH-HhcccccchhhhHHHHHHHHHhhhcc
Q 015537          364 QVIMHVHAFSIIVAF-FFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       364 ~~l~~~~~i~~L~~l-L~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      .   ..|=++..++. |....+   .|.+--+.+|..-||.|
T Consensus       444 ~---p~~Hl~~~vsa~liGl~D---~p~~~~ncsw~~~nlv~  479 (858)
T COG5215         444 S---PCGHLVLEVSASLIGLMD---CPFRSINCSWRKENLVD  479 (858)
T ss_pred             C---ccccccHHHHHHHhhhhc---cchHHhhhHHHHHhHHH
Confidence            2   23333333333 222222   35788899999999976

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.05  E-value=3.7e-09  Score=96.44  Aligned_cols=216  Identities=19%  Similarity=0.259  Sum_probs=153.0

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHh------cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR------SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~------~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~  148 (405)
                      +-.+++.+ +.++++....+..+..+++.+ ....+.+..      ......|+.++.+++ +.++..|+.+|+.+....
T Consensus        60 ~l~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   60 FLNLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             --HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcC
Confidence            34555555 567899999999999998865 344444443      236788889888887 899999999999998875


Q ss_pred             chhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh------hCCCchhH
Q 015537          149 SEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSM  218 (405)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l------~~~~~~~~  218 (405)
                      +....... .+.++.++..+.+    ++.+++..++.+|.++... +.+|..+.+.|+++.+.+++      .+..+..+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            55444422 3556777777665    4567889999999999854 55899999999999999999      45668999


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC-ChHHHHHHHHHHHHhccCChh-HHHHHHhcCChHHHHHhcC
Q 015537          219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTND-KIQAVIEAGVFPRLAEFLM  295 (405)
Q Consensus       219 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~L~~lL~  295 (405)
                      +..++.+++.|+............+++|.|..+++.. .++|..-++.++.|+.....+ ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            9999999999998854333333466899999998764 688999999999999977664 6777888887777666654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.03  E-value=1.6e-08  Score=99.66  Aligned_cols=254  Identities=17%  Similarity=0.205  Sum_probs=200.7

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +++|.+++.|-|.  --++.|+..|.+++... ...+..-..-|+.|.+++||+++. .+++.--+.+.+.|..-++.++
T Consensus       472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence            4567777766653  56778999999998765 666777778899999999999998 8999999999999988889999


Q ss_pred             HHHHhCCChHHHHHhhCC-C--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          153 KVVIDHGAVPIFVKLLYS-P--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~-~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      ..+++.++-.+++++|.. +  +++-+..|+.+|+.|+.+-+..+....+.+.+...+..|+.++.+-++..++-+|..|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            999999889999999987 2  4578899999999999888888888889888998899995545788899999999999


Q ss_pred             hcCCCCCChhhh-hccHHHHHhhhcCCChHHHHHHHHHHHHhccC----ChhHHHHH------------HhcCCh---HH
Q 015537          230 CRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVF---PR  289 (405)
Q Consensus       230 ~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~l---~~  289 (405)
                      -.+.+...+.-. ..+...|..+|.++-++|+..|+.||+.+..+    .++....+            ++.-+.   -.
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            888754444433 67778899999988999999999999998875    33332222            222222   25


Q ss_pred             HHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchH
Q 015537          290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (405)
Q Consensus       290 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~  330 (405)
                      ++.+++...+-++....-+++.++.+...+...+.....++
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~  748 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP  748 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence            66777888999999999999999988776665554333333

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.92  E-value=7.6e-08  Score=87.49  Aligned_cols=266  Identities=14%  Similarity=0.085  Sum_probs=184.9

Q ss_pred             cCHHHHHHhhcCCChH--HHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537           73 ENLPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~--~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      +++..|+.++++.+.+  ++.+|...|..+++.   ++.+.+...| +..++.+-+....++++...+.+|.++..++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            5689999999998754  589999999999864   4566666665 444555555444478999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      ....++..|++..++--.+..+|.+..+++-+|+|++-+. ...+..+++..+-+-|..+- .+.|.-++.++|-+...|
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            9999999999999999888889999999999999998543 45566677777777777666 666888999999999999


Q ss_pred             hcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (405)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l  309 (405)
                      +..+.-.....-.+.+..+-.++.+.||.-...   --...+.+        ....-+++|+.+|++..-+.+.-+.+-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            988644444444666666666676666542211   00111111        1123467899999876555444333333


Q ss_pred             hHhhc--CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 015537          310 GNIVT--GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (405)
Q Consensus       310 ~nl~~--~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (405)
                      ..=++  .....++.+-+-|.+..|..+.+++ +..-.+-|.-+|.-|
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi  450 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI  450 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence            22221  1122345566779999999999877 654444444455444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=7.8e-07  Score=85.80  Aligned_cols=278  Identities=17%  Similarity=0.165  Sum_probs=208.6

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh---
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP---  191 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~---  191 (405)
                      .|+.|++-+.++.-.+=|..|+..|-.++.   ++|..+...| +++|+..|+.  .|+++...++.++.++..++.   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            488898888776657779999999999876   4676666654 8889999986  589999999999999985542   


Q ss_pred             ---h----------hHHHH-HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh---hhccHHHHHhhhcC
Q 015537          192 ---R----------CRDLV-LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ---VSPALPALAHLIHS  254 (405)
Q Consensus       192 ---~----------~~~~i-~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~l~~L~~ll~~  254 (405)
                         .          +.+.+ ...+.+..++..+ ...|..|+..++..+.++-...|......   ...++..++.+|.+
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               1          11222 2456677778887 77899999999999999988865443322   26678889999998


Q ss_pred             CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC----CcchHHHHHHHHhHhhcCChhhHHHHHhcCchH
Q 015537          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (405)
Q Consensus       255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~  330 (405)
                      .-..|+.+++..|..++.+++...+.+.=.+++.+|..++...    ..-|...|+..|.|+...+......+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            8899999999999999988876655555558999999999532    235778899999999998888888899999999


Q ss_pred             HHHHhhcCCC--c--------hhHH--HHHHHHHHHHhc-CC----HHHH-HHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537          331 CLLNLLSGNY--K--------KSIK--KEACWTVSNITA-GN----REQI-QVIMHVHAFSIIVAFFFMFLHFFFGAIIY  392 (405)
Q Consensus       331 ~L~~ll~~~~--~--------~~v~--~~a~~~L~nl~~-~~----~~~~-~~l~~~~~i~~L~~lL~~~~~~~~~~~vr  392 (405)
                      .|.++|....  +        .++.  ..+..++.-+.. ++    ..+. ..+.+.+++..|+.++-+..-   ..+|+
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v---p~dIl  334 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGV---PADIL  334 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC---cHhHH
Confidence            9998886431  1        1222  335555555554 22    2223 345589999999999876542   35899


Q ss_pred             HHHHHHHhhh
Q 015537          393 KLAIWLCLVT  402 (405)
Q Consensus       393 ~~A~~al~n~  402 (405)
                      .++..++++.
T Consensus       335 tesiitvAev  344 (970)
T KOG0946|consen  335 TESIITVAEV  344 (970)
T ss_pred             HHHHHHHHHH
Confidence            9988888764

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.79  E-value=8.9e-07  Score=82.55  Aligned_cols=307  Identities=14%  Similarity=0.032  Sum_probs=192.4

Q ss_pred             ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHH
Q 015537           86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV  165 (405)
Q Consensus        86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~  165 (405)
                      +..+++.|+.+|.+-+-.-+.....+--..-++...++.-+.++ .+++..|..||..|..-..+..+...+.-......
T Consensus       191 ~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~  269 (858)
T COG5215         191 TSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTG  269 (858)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777766221100000000001113444455555555 89999999999999887777777888877778888


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH----------------hcCChHHHHHhhhC-CC-----chhHHHHHH
Q 015537          166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL----------------SQGGLVPLLAQLNG-QP-----KLSMLRNAT  223 (405)
Q Consensus       166 ~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~----------------~~~~i~~L~~~l~~-~~-----~~~~~~~a~  223 (405)
                      +.+++++.++.-+++...+.+|.+..+..-...                -..++|.|+++|.+ ++     +-.+-..+.
T Consensus       270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~  349 (858)
T COG5215         270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS  349 (858)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence            899999999999999999888854322211111                12367888999854 22     234555555


Q ss_pred             HHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHH
Q 015537          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI  303 (405)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~  303 (405)
                      .||--+++...   ...+.+++..+-.-+++++..-+..+.-+++.+.++..+..-.-+-...+|.+...+.++..-++.
T Consensus       350 sCLqlfaq~~g---d~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~  426 (858)
T COG5215         350 SCLQLFAQLKG---DKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKS  426 (858)
T ss_pred             HHHHHHHHHhh---hHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence            56655554431   123456777777778888888999999999999988765544444456788888888877788999


Q ss_pred             HHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC--CchhHHHHHHHHHHHHhcCCHHHH---HHHHH---hCcHHHH
Q 015537          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKSIKKEACWTVSNITAGNREQI---QVIMH---VHAFSII  375 (405)
Q Consensus       304 ~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~v~~~a~~~L~nl~~~~~~~~---~~l~~---~~~i~~L  375 (405)
                      .+.|++|.|+.+-.   ..+-..|-++..+....-+  ..+.+....+|..-|+..+-++..   ...+-   ..++..|
T Consensus       427 ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L  503 (858)
T COG5215         427 TTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL  503 (858)
T ss_pred             HHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence            99999999985432   2222334333333222111  145788899999999987544433   12221   1233333


Q ss_pred             HHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          376 VAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       376 ~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      ++.-.-..   .+...|-.+.-+|+.+
T Consensus       504 v~~t~~~~---Ne~n~R~s~fsaLgtl  527 (858)
T COG5215         504 VKGTELAL---NESNLRVSLFSALGTL  527 (858)
T ss_pred             HHHHHhhc---cchhHHHHHHHHHHHH
Confidence            33322222   2346788777777754

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.76  E-value=6.9e-07  Score=81.41  Aligned_cols=273  Identities=16%  Similarity=0.162  Sum_probs=187.0

Q ss_pred             hHHHHhcCcHHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 015537          109 IEEVIRSGVVPRFVEFLLREDY-PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNI  186 (405)
Q Consensus       109 ~~~~~~~g~l~~Li~lL~~~~~-~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl  186 (405)
                      .+.+...|++..|+.++..++. ..++.+|+..|-.+..  .++++.+...| +..++.+.+. ..++++...+..|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            4556677899999999998872 3569999999999877  67888888877 5555555554 5678999999999999


Q ss_pred             hCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCChhhh-hccHHHHHhhhcCCChHHHHHHH
Q 015537          187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQV-SPALPALAHLIHSNDDEVLTDAC  264 (405)
Q Consensus       187 ~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~  264 (405)
                      ..++.+....+++.|+++.++--. ...++.+.+.++.+|.|+.-+.. .....++ ..+-.-|..+-.+.|+-.+..||
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999988888889999999998888 77789999999999999988752 2222223 44555677777778888999999


Q ss_pred             HHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhH
Q 015537          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (405)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v  344 (405)
                      .+++-++...+ ....+..+|.+..+-.++.+-++.-...   --...+.|.        ...-++.|+.+|++. ..+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence            99999886543 3345666777777767776656532211   111112221        123577888899876 5555


Q ss_pred             HHHHHHHHHHHhc-CCHHHH-HHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537          345 KKEACWTVSNITA-GNREQI-QVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       345 ~~~a~~~L~nl~~-~~~~~~-~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                      +--+++-++-=++ .+.... +.+-+-|.|..|-++.++.+.-  -...-++|.-.|+
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~v--aakfAseALtviG  451 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEV--AAKFASEALTVIG  451 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHH--HHHHHHHHHHHhc
Confidence            5444444443332 122222 2333689999999988754222  2344456655554

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=9.1e-06  Score=80.95  Aligned_cols=286  Identities=14%  Similarity=0.179  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHhhccCCCCchHHHH-----hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHH
Q 015537           89 VQYECTTQFRKLLSIERSPPIEEVI-----RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (405)
Q Consensus        89 ~~~~a~~~l~~l~s~~~~~~~~~~~-----~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~  163 (405)
                      -..-++.+|+++++..  |....++     --|.++.++.+|.....+.++.-|+.++.-++.. .++...+...|.+..
T Consensus      1741 ~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHH
Confidence            4456789999998763  4333333     2366788888887655589999999999887776 788888999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC---CCCChhh
Q 015537          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---PQPPFDQ  240 (405)
Q Consensus       164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~  240 (405)
                      |+.+|.+ -|..++.++.+|+-+++... .....+++|++..+++++-...++..+..++..+..+.-.+   |...+..
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            9998886 57789999999999997766 55666788999999988877778888888888888776654   2111111


Q ss_pred             h-------------------------------------------------------------------------------
Q 015537          241 V-------------------------------------------------------------------------------  241 (405)
Q Consensus       241 ~-------------------------------------------------------------------------------  241 (405)
                      +                                                                               
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            1                                                                               


Q ss_pred             --------------------------hccHHHHHhhhcCCC--hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHh
Q 015537          242 --------------------------SPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF  293 (405)
Q Consensus       242 --------------------------~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  293 (405)
                                                .+++..+.+++..+.  .....-...++..|....+...+.+-..|.+|.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                                      111122222221111  0111111122223333444444555556889999999


Q ss_pred             cCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcH
Q 015537          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAF  372 (405)
Q Consensus       294 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i  372 (405)
                      +...+..+-..|++.|..++. +....+.+-....+..++..+...  +...--||-+|..+.. ...+.+.+.++.|++
T Consensus      2056 m~~~n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             HHhcCCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            988777788899999999875 344455555556666677777654  3445578888888876 455666777899999


Q ss_pred             HHHHHHHhcc
Q 015537          373 SIIVAFFFMF  382 (405)
Q Consensus       373 ~~L~~lL~~~  382 (405)
                      |.|+.+|...
T Consensus      2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred             HHHHHHhccc
Confidence            9999999743

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=7.4e-06  Score=79.50  Aligned_cols=135  Identities=13%  Similarity=0.173  Sum_probs=81.6

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHH
Q 015537          245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI  324 (405)
Q Consensus       245 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~  324 (405)
                      +..|-++|.+.|..++.-++..|.+....++..++...     ..++.+|+++|..++..|+..+-.++..+.  ..   
T Consensus       315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~lvn~~N--v~---  384 (866)
T KOG1062|consen  315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYALVNESN--VR---  384 (866)
T ss_pred             HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HH---
Confidence            34455555555555666666666665555554444332     467888888888888888888877774433  22   


Q ss_pred             hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC----CHHHHHHH----------HHhCcHHHHHHHHhcccccchhhh
Q 015537          325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG----NREQIQVI----------MHVHAFSIIVAFFFMFLHFFFGAI  390 (405)
Q Consensus       325 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~----~~~~~~~l----------~~~~~i~~L~~lL~~~~~~~~~~~  390 (405)
                        .++.-|+.+|.+. ++..|...+.-+.-++..    +.=+++.+          +...++..++.++.+...+..++.
T Consensus       385 --~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~  461 (866)
T KOG1062|consen  385 --VMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA  461 (866)
T ss_pred             --HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence              2345577777777 778887777777766641    11122222          344567777777777644444444


Q ss_pred             HH
Q 015537          391 IY  392 (405)
Q Consensus       391 vr  392 (405)
                      ++
T Consensus       462 ~~  463 (866)
T KOG1062|consen  462 VL  463 (866)
T ss_pred             HH
Confidence            43

>TIGR02270 conserved hypothetical protein

Probab=98.65  E-value=1.5e-05  Score=74.64  Aligned_cols=238  Identities=18%  Similarity=0.063  Sum_probs=152.2

Q ss_pred             CHHHHHHhhc-CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      .++.++..|. .++..+...++..+.   ..+ .+.        .+..|+..|.+++ +.++..++.+|+.+-..     
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~-----  116 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL---AQE-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGGR-----  116 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCch-----
Confidence            3566777774 345566555444442   111 111        2788999998887 78999999999875332     


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                            ...+.|+.+|.+.++.++..++.+++..-.            ...+.+...| ++.++.++..++.++..+...
T Consensus       117 ------~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       117 ------QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             ------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                  567888999999999999888887777321            1345777888 788999999999999988765


Q ss_pred             CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                                ..++.|...+.+.|+.|+..++++++.+-.  +.-         +..+..+...........+..+++..
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A---------~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLA---------WGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhH---------HHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      566677788899999999999999977732  221         23333333333333333333333222


Q ss_pred             hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY  392 (405)
Q Consensus       313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr  392 (405)
                        +.+         ..++.|..++.++   .++..++++++.+  +++.         .++.|+..+...       .++
T Consensus       237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~l--g~p~---------av~~L~~~l~d~-------~~a  284 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLV--GDVE---------AAPWCLEAMREP-------PWA  284 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHc--CCcc---------hHHHHHHHhcCc-------HHH
Confidence              111         3456666666665   3777777777766  2332         345555555433       366


Q ss_pred             HHHHHHHhh
Q 015537          393 KLAIWLCLV  401 (405)
Q Consensus       393 ~~A~~al~n  401 (405)
                      +.|.+++..
T Consensus       285 R~A~eA~~~  293 (410)
T TIGR02270       285 RLAGEAFSL  293 (410)
T ss_pred             HHHHHHHHH
Confidence            666666653

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.65  E-value=3.3e-06  Score=78.17  Aligned_cols=314  Identities=17%  Similarity=0.108  Sum_probs=196.2

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      +.+..++-+++.+++..+.+.+|.++..  ....+.+.+.++--.++.-|..++ ...-+++|+..+..+..... ..+ 
T Consensus        28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~-  103 (371)
T PF14664_consen   28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK-  103 (371)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence            4444455566699999999999999865  466777888886666677776543 35568899999888777521 111 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                      .+..|++..++.+..+++..++..|+.+|..++-.+|   +.+.+.|++..|++.+.. +..++...++.++.++...+.
T Consensus       104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence            1244789999999999999999999999999998888   578899999999999954 555588999999999998864


Q ss_pred             CCChhhhhccHHHHHhhhc-C------CCh--HHHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCCCCcchHHH
Q 015537          235 QPPFDQVSPALPALAHLIH-S------NDD--EVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPSVLIP  304 (405)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~-~------~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~  304 (405)
                      .........-+..++.-+. .      ++.  +....+..++..+...=+...-.-.+. ..+..++..|..++++++..
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            4443333222333332221 1      222  345555666666554322221111111 46788999999999999999


Q ss_pred             HHHHHhHhhcCCh-hhH------HHHHhcCchHHHHHhhc--CCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhCcHHH
Q 015537          305 ALRTVGNIVTGDD-MQT------QCVIEYQALPCLLNLLS--GNYKKSIKKEACWTVSNITAGNR-EQIQVIMHVHAFSI  374 (405)
Q Consensus       305 a~~~l~nl~~~~~-~~~------~~~~~~g~l~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~  374 (405)
                      .+..+..+..-.. .-.      ......|....--++-.  .+... ....-..-=.|+..+.- -....++++|+++.
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~-~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~  338 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKS-ILPHRSSKRPNLVNHYLALLLAILIEAGLLEA  338 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccccc-ccCccccccccHHHHHHHHHHHHHHHcChHHH
Confidence            9988888775322 111      11111222100000000  00000 00000001122222111 22344569999999


Q ss_pred             HHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          375 IVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       375 L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      |+++..+..+.    .+.+.|+..|+..
T Consensus       339 L~~li~~~~d~----~l~~KAtlLL~el  362 (371)
T PF14664_consen  339 LVELIESSEDS----SLSRKATLLLGEL  362 (371)
T ss_pred             HHHHHhcCCCc----hHHHHHHHHHHHH
Confidence            99999887555    6899999998864

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=8.5e-05  Score=71.53  Aligned_cols=219  Identities=17%  Similarity=0.164  Sum_probs=159.8

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      -+.++.+|.++-+-++..|+..+.++.-.- .+   .+  .-.+|.|.+-|.+++ |.++-.|..+++.++..+|.+-- 
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-Pe---Al--r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PE---AL--RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hH---hH--hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence            477888888888889999988887775322 11   11  124889999999888 89999999999999998777532 


Q ss_pred             HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh--hc
Q 015537          155 VIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF--CR  231 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l--~~  231 (405)
                          ..-|.+..+|-+ .+.=+.-..+..+++|+--.|-..     ...+++|.+++.+..-.++...+..++...  +.
T Consensus       218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                345777887765 344455667788888876666443     336789999994444456666666665433  33


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      +. ......+.-+++.|-.++.++|+....-++.+++.+....+..++..     -+.++.+|.+.|++++..|+..+--
T Consensus       289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~g  362 (877)
T KOG1059|consen  289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYG  362 (877)
T ss_pred             CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHH
Confidence            32 23334446678888889999999999999999999998887765533     3688999999999999999999988


Q ss_pred             hhcCC
Q 015537          312 IVTGD  316 (405)
Q Consensus       312 l~~~~  316 (405)
                      ++...
T Consensus       363 mVskk  367 (877)
T KOG1059|consen  363 MVSKK  367 (877)
T ss_pred             Hhhhh
Confidence            87543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=3.6e-07  Score=84.47  Aligned_cols=281  Identities=16%  Similarity=0.198  Sum_probs=187.4

Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 015537          112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (405)
Q Consensus       112 ~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~  191 (405)
                      +.+..+.+.|+++|+.++ ..+..-++..++|..-.-+..+..+++.|+|..|+.++.+.+..++..+.|.+.++..+..
T Consensus       427 L~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq  505 (743)
T COG5369         427 LLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ  505 (743)
T ss_pred             ccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence            456778999999999877 6788888889999887767788899999999999999999999999999999999986543


Q ss_pred             h-hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC--CChhhh------hccHHHHHhhhcCCChHHHHH
Q 015537          192 R-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--PPFDQV------SPALPALAHLIHSNDDEVLTD  262 (405)
Q Consensus       192 ~-~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~------~~~l~~L~~ll~~~d~~v~~~  262 (405)
                      . .+-..+..-++..++.+. ++++-.++..+...+.|+.-+...  ......      .-+...++..+...+|--...
T Consensus       506 ~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~  584 (743)
T COG5369         506 KNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE  584 (743)
T ss_pred             chhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence            2 233455666889999999 899999999999999999774311  111111      235567777788888877788


Q ss_pred             HHHHHHHhccCChhHHHHHHhc-CChHHHHHhcC----C-------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchH
Q 015537          263 ACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLM----H-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (405)
Q Consensus       263 a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~----~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~  330 (405)
                      .+..|.+++..++...+.+.+. ..+..+...|.    .       ....+..+-....-++..+.+.....+...   |
T Consensus       585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p  661 (743)
T COG5369         585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---P  661 (743)
T ss_pred             hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---C
Confidence            8999999887766555544443 44444444441    1       112233333333333333222111111100   1


Q ss_pred             HHHHhhcCC--CchhHHHHHHHHHHHHhc---CC------HHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHH
Q 015537          331 CLLNLLSGN--YKKSIKKEACWTVSNITA---GN------REQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLC  399 (405)
Q Consensus       331 ~L~~ll~~~--~~~~v~~~a~~~L~nl~~---~~------~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al  399 (405)
                      .+-..=.++  .+.++--+..|.+-|+..   ++      .+.++.+.+.|+-.-|..+....     ++.||..+.-||
T Consensus       662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~-----Sl~vrek~~taL  736 (743)
T COG5369         662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKD-----SLIVREKIGTAL  736 (743)
T ss_pred             CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccC-----cHHHHHHHHHHH
Confidence            111111111  144577788898888753   22      36677777888777777765443     357999988888


Q ss_pred             hhh
Q 015537          400 LVT  402 (405)
Q Consensus       400 ~n~  402 (405)
                      -|.
T Consensus       737 ~~l  739 (743)
T COG5369         737 ENL  739 (743)
T ss_pred             Hhh
Confidence            764

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.55  E-value=1.8e-07  Score=57.05  Aligned_cols=41  Identities=27%  Similarity=0.564  Sum_probs=37.6

Q ss_pred             ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       316 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      ++++.+.+++.|++|.|+.+|.++ ++.++++|+|+|+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            356788899999999999999988 99999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.54  E-value=3.1e-05  Score=71.76  Aligned_cols=186  Identities=28%  Similarity=0.315  Sum_probs=144.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .++.+++.+.+.++.++..|+..+..+-..            -.++.+..++.+.+ +.++..|+.+|+.+-..      
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~------  104 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP------  104 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh------
Confidence            578899999999999999999887666322            25899999999998 89999999988887442      


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCc------------hhHHH
Q 015537          154 VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK------------LSMLR  220 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~------------~~~~~  220 (405)
                           ..++.|+.++. +++..++..+.++|+.+-...           .+.+++..+ .+..            ..++.
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l-~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEAL-QDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHh-ccchhhhhhhhccchHHHHHH
Confidence                 46889999998 589999999999999984221           366777777 3322            13455


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcc
Q 015537          221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS  300 (405)
Q Consensus       221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  300 (405)
                      .+...+..+-..          ..++.+..++.+.+..++..+..+++.+....         ..+.+.+...+.+.+..
T Consensus       168 ~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            555555555433          56778888898888999999999999987655         23457888899999999


Q ss_pred             hHHHHHHHHhHhhc
Q 015537          301 VLIPALRTVGNIVT  314 (405)
Q Consensus       301 v~~~a~~~l~nl~~  314 (405)
                      ++..++..+|.+-.
T Consensus       229 vr~~~~~~l~~~~~  242 (335)
T COG1413         229 VRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHHHhcccCc
Confidence            99999999998764

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.52  E-value=7.2e-06  Score=78.85  Aligned_cols=231  Identities=16%  Similarity=0.122  Sum_probs=148.4

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH--HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CC
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QP  236 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~--~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~  236 (405)
                      ++..++..|++.++.++++++..++.++.--..+.  ..+...|.  .|...| ...+++++-.++.++..++.... ..
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~nvigm~k  876 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTK  876 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHHhccccc
Confidence            45667778899999999999999999883222221  12222222  345555 77789998888888887776531 12


Q ss_pred             ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc--
Q 015537          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT--  314 (405)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--  314 (405)
                      ...-+.+++|.|...|++....|+.+++..++.+++..++.+..=-=..+.--|+.+|.+.+.+++..|..++|-|+.  
T Consensus       877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence            223347899999999999999999999999999998877643211101234457788888888999999999998884  


Q ss_pred             CChhhHHHHH-----------------------hcC---chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHH
Q 015537          315 GDDMQTQCVI-----------------------EYQ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQVIM  367 (405)
Q Consensus       315 ~~~~~~~~~~-----------------------~~g---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~  367 (405)
                      |..+....++                       .+|   ++|.|+.=...+ +..|+..+..+++.+.....+ ..+++ 
T Consensus       957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~FeyigemskdYi- 1034 (1172)
T KOG0213|consen  957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEMSKDYI- 1034 (1172)
T ss_pred             CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHH-
Confidence            2222221111                       134   344444444455 677888888888888652111 12222 


Q ss_pred             HhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537          368 HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       368 ~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n  401 (405)
                       .-+.|.|-+.|...+     +--|.-|.-++.+
T Consensus      1035 -yav~PlleDAlmDrD-----~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 1035 -YAVTPLLEDALMDRD-----LVHRQTAMNVIKH 1062 (1172)
T ss_pred             -HHhhHHHHHhhcccc-----HHHHHHHHHHHHH
Confidence             345677777764431     2356666655544

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.50  E-value=4.1e-05  Score=73.09  Aligned_cols=265  Identities=17%  Similarity=0.139  Sum_probs=177.7

Q ss_pred             HHHHHHhhccCCCCchHHHHhcCcHHHHHHHh---------cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHH
Q 015537           94 TTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL---------LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF  164 (405)
Q Consensus        94 ~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL---------~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L  164 (405)
                      +.+|+-+ +.+ ....+.+....++..|.++-         ....++.+..+|+.||+|+...++..|+.+++.|..+.+
T Consensus         2 L~~LRiL-sRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRIL-SRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHHH-ccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            3444444 443 34555666666677777665         333348999999999999999999999999999999999


Q ss_pred             HHhhCCC-----CHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHhhh---------CC-------CchhHHHHH
Q 015537          165 VKLLYSP-----SDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLN---------GQ-------PKLSMLRNA  222 (405)
Q Consensus       165 ~~lL~~~-----~~~i~~~a~~~L~nl~~~~~~~~~~i~~-~~~i~~L~~~l~---------~~-------~~~~~~~~a  222 (405)
                      +..|+..     +.++.......|.-+....+..+..+.+ .+++..++..+.         ..       .+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999875     7888888888888888777667765554 467777766652         01       256678899


Q ss_pred             HHHHHHhhcCCCCCCh----hhhhccHHHHHhhh---cCC--ChHHHHHHHHHHHHhccCChhH-----------HHHHH
Q 015537          223 TWTLSNFCRGKPQPPF----DQVSPALPALAHLI---HSN--DDEVLTDACWALSYLSDGTNDK-----------IQAVI  282 (405)
Q Consensus       223 ~~~l~~l~~~~~~~~~----~~~~~~l~~L~~ll---~~~--d~~v~~~a~~~l~~l~~~~~~~-----------~~~~~  282 (405)
                      +..+.|+....+....    .....++..+..++   ..+  .......++.+|.++--.....           .....
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            9999999887644332    22344445555552   111  2456677777777763211111           00001


Q ss_pred             hcCChHHHHHhcCC-----C---CcchHHHHHHHHhHhhcCChhhHHHHHh----------------cCchHHHHHhhcC
Q 015537          283 EAGVFPRLAEFLMH-----P---SPSVLIPALRTVGNIVTGDDMQTQCVIE----------------YQALPCLLNLLSG  338 (405)
Q Consensus       283 ~~~~l~~L~~lL~~-----~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~----------------~g~l~~L~~ll~~  338 (405)
                      ....+..|+.+|..     .   -.+...+.+.+|.+++......++.+..                ..+-..|++++.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            12345666666631     1   1357788999999999876655554432                2477889999999


Q ss_pred             CCchhHHHHHHHHHHHHhcCCHH
Q 015537          339 NYKKSIKKEACWTVSNITAGNRE  361 (405)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~~~~~  361 (405)
                      . .+.+|..++-.|..+|..+..
T Consensus       320 ~-~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  320 P-DPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             C-CchHHHHHHHHHHHHHhhhHH
Confidence            9 699999999888888865544

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=0.00019  Score=63.09  Aligned_cols=300  Identities=17%  Similarity=0.173  Sum_probs=190.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCc---hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP---IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~---~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      .|.+-..|..++..+...++..+..++...+...   +..++..|+++.++..+-.++ .++-..|...+..|+.. +..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHH
Confidence            3555556667788899999988888876542222   344568899999999999888 79999999999999887 777


Q ss_pred             HHHHHhCCChHHH--HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHH---
Q 015537          152 TKVVIDHGAVPIF--VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL---  226 (405)
Q Consensus       152 ~~~~~~~g~i~~L--~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l---  226 (405)
                      ...+.+......+  ..+--..+.-.+...+..+..+.+-++.....+...|.+..|..-|....|.-++.+++...   
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            7777777666443  22333345556777788888888888888888888888888877774445554444444443   


Q ss_pred             -------------------HHhhcCCCCCChhhh---------------------------hccHHHHHhhhcCCChHHH
Q 015537          227 -------------------SNFCRGKPQPPFDQV---------------------------SPALPALAHLIHSNDDEVL  260 (405)
Q Consensus       227 -------------------~~l~~~~~~~~~~~~---------------------------~~~l~~L~~ll~~~d~~v~  260 (405)
                                         +|+..+....++...                           -..+.....++..+|++.+
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence                               333333211111100                           0011122345566788888


Q ss_pred             HHHHHHHHHhccCChhHHHHHHhcCC--hHHHHHhcCC-CCcchHHHHHHHHhHhhcCC---hh----------hHHHHH
Q 015537          261 TDACWALSYLSDGTNDKIQAVIEAGV--FPRLAEFLMH-PSPSVLIPALRTVGNIVTGD---DM----------QTQCVI  324 (405)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~~~~~--l~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~---~~----------~~~~~~  324 (405)
                      ..+..+++.+-... +..+.+.+.|-  ...++.-..+ +...-+..++++|.+|+...   ++          .+..+.
T Consensus       322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif  400 (524)
T KOG4413|consen  322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF  400 (524)
T ss_pred             HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence            88888888876433 34455555542  3333333322 22334667888888887421   11          111111


Q ss_pred             h-------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH
Q 015537          325 E-------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAF  378 (405)
Q Consensus       325 ~-------~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l  378 (405)
                      +       ..-++.+..+++.+ .+.++-.+..++..+++..-.+...+-+.|++....+.
T Consensus       401 daaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqPWalkeifakeefieiVtDa  460 (524)
T KOG4413|consen  401 DAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDA  460 (524)
T ss_pred             HHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeeccc
Confidence            1       13456777788887 89999999999999977654444444467777766653

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.49  E-value=2.6e-07  Score=56.39  Aligned_cols=41  Identities=41%  Similarity=0.863  Sum_probs=38.3

Q ss_pred             CchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 015537          148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG  188 (405)
Q Consensus       148 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~  188 (405)
                      ++++++.+++.|++|.|+.+|.++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            36789999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.45  E-value=6.1e-06  Score=79.35  Aligned_cols=259  Identities=17%  Similarity=0.190  Sum_probs=163.8

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCC-CCchHHHHhcCcHHHHHHHhcCCCCHHHHHHH---HHHHHHHhcCCchh
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA---AWALTNIASGTSEH  151 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a---~~~L~ni~~~~~~~  151 (405)
                      ..++..|++..+.++.+|+..+..++.--. ..--..+...|+  .|.+.|.... |++.-..   +.++.|...- ...
T Consensus       802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~nvigm-~km  877 (1172)
T KOG0213|consen  802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIVNVIGM-TKM  877 (1172)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHHHhccc-ccc
Confidence            445566778888899988877766642210 011112223332  3567777666 7765444   4444444322 111


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      +..+  .+++|.|...|++....++++++..++.||..++++...---..+--.|+.+| ..-+.++++++..++..++.
T Consensus       878 ~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  878 TPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHH
Confidence            1111  27899999999999999999999999999987765322111112334677777 67788999999999999998


Q ss_pred             CC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537          232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (405)
Q Consensus       232 ~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~  310 (405)
                      .- |       ..++..|+.-|+..+-.-+.....+++-.+..+.-.       .++|.|+.--..++..|+...+++++
T Consensus       955 aIGP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtPe~nVQnGVLkals 1020 (1172)
T KOG0213|consen  955 AIGP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTPEANVQNGVLKALS 1020 (1172)
T ss_pred             hcCH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCchhHHHHhHHHHHH
Confidence            64 2       345566666666555444444444444444322211       34677766667788889999999988


Q ss_pred             HhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537          311 NIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (405)
Q Consensus       311 nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (405)
                      .+...-. ...+++  .-+.|.|.+.|.+. +..-|..|+-++..++-+
T Consensus      1021 f~FeyigemskdYi--yav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1021 FMFEYIGEMSKDYI--YAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             HHHHHHHHHhhhHH--HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence            8764322 122222  24678888888888 888888888888777653

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=0.00015  Score=63.18  Aligned_cols=270  Identities=16%  Similarity=0.218  Sum_probs=172.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHH--hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +..+++++.+.+|.++..|+..+..+...    ..+.+.  +.-.++.+.+++.... +  -..|+.+|.|++.. ...+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-EELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-HHHH
Confidence            56889999999999999999888877543    233333  2345788999998876 4  67889999999987 7778


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-----CChHHHHHhh-hCCCc-hhHHHHHHHH
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----GGLVPLLAQL-NGQPK-LSMLRNATWT  225 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-----~~i~~L~~~l-~~~~~-~~~~~~a~~~  225 (405)
                      +.+++. .+..++..+-++...+....+..|.|++.+...++......     .++..+...+ ..+.+ ..-..+.+..
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            777776 67777777777777788899999999999887666554322     2333344433 22222 2345677788


Q ss_pred             HHHhhcCCCCCChhhhhccHH--HHHhhhcCCChHHHH-HHHHHHHHhccCChhHHHHHHhc--CChHHHH---------
Q 015537          226 LSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEA--GVFPRLA---------  291 (405)
Q Consensus       226 l~~l~~~~~~~~~~~~~~~l~--~L~~ll~~~d~~v~~-~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~---------  291 (405)
                      ++|+++.............+|  .+..+-. .+..++. ..+.+|.|.|.....+- .++..  .++|.++         
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCcccc
Confidence            888888754333333322222  3444433 5555553 45667777664433222 22221  2233322         


Q ss_pred             ------------HhcC-----CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          292 ------------EFLM-----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       292 ------------~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                                  ++|.     .+++.++..-+.+|--+++ +...++.+.+.|+.+.+-.+=....++.++ ++|.-+++
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vvq  311 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVVQ  311 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHHH
Confidence                        2331     2466788888888887775 445677788888888777776666455555 45555555


Q ss_pred             Hhc
Q 015537          355 ITA  357 (405)
Q Consensus       355 l~~  357 (405)
                      +..
T Consensus       312 ~Lv  314 (353)
T KOG2973|consen  312 MLV  314 (353)
T ss_pred             HHH
Confidence            543

>TIGR02270 conserved hypothetical protein

Probab=98.44  E-value=7.9e-05  Score=69.91  Aligned_cols=209  Identities=18%  Similarity=0.057  Sum_probs=154.3

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      +..++..|.+.++.++..++..|..+-.            .+..+.|+.+|++.+ +.++..++.+++....        
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~~~~-p~vR~aal~al~~r~~--------  146 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLAASE-PPGRAIGLAALGAHRH--------  146 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhcCCC-hHHHHHHHHHHHhhcc--------
Confidence            7889999988888899999998876621            235788999998888 8999888877776221        


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                          ...+.+..+|++.++.++..++.+|+.+-..           ..++.|...+ .+.++.|+..+++++..+-..  
T Consensus       147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al-~d~~~~VR~aA~~al~~lG~~--  208 (410)
T TIGR02270       147 ----DPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYL-RDSDPEVRFAALEAGLLAGSR--  208 (410)
T ss_pred             ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHH-cCCCHHHHHHHHHHHHHcCCH--
Confidence                3467899999999999999999999998532           2344566666 899999999999999776332  


Q ss_pred             CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                              ..++.+..+....+......+...+...  +.+         .+++.|..+++.+.  ++..++.++|.+-.
T Consensus       209 --------~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~  267 (410)
T TIGR02270       209 --------LAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD  267 (410)
T ss_pred             --------hHHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence                    3455556544444444443333333332  222         35688889997754  89999999997642


Q ss_pred             CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       315 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                                 ...++.|+..+.+.   .+++.|.++++.|+.
T Consensus       268 -----------p~av~~L~~~l~d~---~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       268 -----------VEAAPWCLEAMREP---PWARLAGEAFSLITG  296 (410)
T ss_pred             -----------cchHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence                       24688889988776   499999999999986

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=0.00014  Score=70.16  Aligned_cols=218  Identities=15%  Similarity=0.143  Sum_probs=161.7

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (405)
                      +-+-++.+|+++. |-++..|+.++..+.-..|+..+     ..+|.|..-|.++++.|+..|+.+++.||..+|..-  
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence            4556777888887 89999999999998886666433     468999999999999999999999999998887531  


Q ss_pred             HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHH--hccC
Q 015537          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSY--LSDG  273 (405)
Q Consensus       197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~--l~~~  273 (405)
                         ...-|.+.++|..+.+--+....+..+.+|+--.|    ..-..+++.|..+++++. -.+...++.++..  ++.+
T Consensus       217 ---L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 ---LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ---ccccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence               12446677777677787788888888888876644    223578888889988765 4555566555543  3333


Q ss_pred             ChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537          274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (405)
Q Consensus       274 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (405)
                      .++....+.  -.+..|-.++.+.|+.++.-++.+++-|....+...+.     .-+.++++|.+. |+.||-.|.-.|-
T Consensus       290 ~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence            222211111  13577888889999999999999999999766654442     356789999999 9999999999988


Q ss_pred             HHhc
Q 015537          354 NITA  357 (405)
Q Consensus       354 nl~~  357 (405)
                      -+..
T Consensus       362 gmVs  365 (877)
T KOG1059|consen  362 GMVS  365 (877)
T ss_pred             HHhh
Confidence            8864

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=0.00012  Score=69.55  Aligned_cols=233  Identities=16%  Similarity=0.145  Sum_probs=163.8

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (405)
                      ++..|+.-++.+. +.+|...+.||.-+........    ..-+.+.+.+++......-+..+.+.++.+..+...  ..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence            4777888888888 8999999999877655321111    112467778888888888888999999999877653  45


Q ss_pred             HHhcCChHHHHHhhhCCCchhHHH-HHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh
Q 015537          197 VLSQGGLVPLLAQLNGQPKLSMLR-NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (405)
Q Consensus       197 i~~~~~i~~L~~~l~~~~~~~~~~-~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (405)
                      +.+.+++..+...+ .+......+ .+..+.-..+..-.......+...+|.++.-+.+..+.++..+..+.-.+...-+
T Consensus       170 ~~~~~~l~~l~~ai-~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAI-IDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhhhhHHHHHHHHh-cccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            56777888888888 444444433 4555555555443444445556777777777777788999888887776654332


Q ss_pred             h-HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          276 D-KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       276 ~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                      . ..+     -+++.++.-+....+.....++..+|.++...+.+.. ..-..++|.+.+.|.+. ++.+|+.+--++-+
T Consensus       249 ~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  249 AYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLK  321 (569)
T ss_pred             cchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHH
Confidence            2 222     1245555555444788889999999999887776665 44558999999999999 99999999999999


Q ss_pred             Hhc--CCHHHHHH
Q 015537          355 ITA--GNREQIQV  365 (405)
Q Consensus       355 l~~--~~~~~~~~  365 (405)
                      ++.  .+++ |+.
T Consensus       322 ~~svidN~d-I~~  333 (569)
T KOG1242|consen  322 FGSVIDNPD-IQK  333 (569)
T ss_pred             HHHhhccHH-HHH
Confidence            986  3444 443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=6.6e-06  Score=79.78  Aligned_cols=247  Identities=17%  Similarity=0.163  Sum_probs=155.9

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (405)
                      +...+...+++.+ +.++..|+.+..++-..+   .+.+.+.|.++.|-.++.++++.+..+|+.+|..|....+..-..
T Consensus       122 ~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  122 LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence            3567777788877 899999999998886653   446778899999999999999999999999999998665431111


Q ss_pred             HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (405)
Q Consensus       197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (405)
                          .....+++.+...-+.-.-..-+..+-.++...|... .....++..+...+++.++.+...+...+.++......
T Consensus       198 ----~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~  272 (734)
T KOG1061|consen  198 ----ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ  272 (734)
T ss_pred             ----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence                1223333332222233333444455566666655544 33456777888888999988888888888887765444


Q ss_pred             HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHH--------------------------hcCchH
Q 015537          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI--------------------------EYQALP  330 (405)
Q Consensus       277 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~--------------------------~~g~l~  330 (405)
                      . ...+-..+-+.++.++++.. +++..+++=+.-+....+.....-+                          +.++-+
T Consensus       273 ~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q  350 (734)
T KOG1061|consen  273 V-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ  350 (734)
T ss_pred             H-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence            2 22333456677888887766 7777777766666654442111000                          111222


Q ss_pred             HHHHhhcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 015537          331 CLLNLLSGN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFF  380 (405)
Q Consensus       331 ~L~~ll~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~  380 (405)
                      .+-.+....  .+....+++.+++++++..-.+.      +++++.|++++.
T Consensus       351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~  396 (734)
T KOG1061|consen  351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLE  396 (734)
T ss_pred             HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHh
Confidence            222222211  16778889999999998643321      344444444444

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=6.7e-06  Score=79.73  Aligned_cols=299  Identities=16%  Similarity=0.171  Sum_probs=165.9

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      ...+.+.++++++.++..|+...+++-    ....+...+.|+++.|.+++.+++ |.+...|+.+|..|...++.....
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcc
Confidence            467777888889999999999998885    455667788999999999999777 899999999999998876541111


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~-~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      .+..-.+..   +|..-+.-.-..-+.+|.+++.+.+.- ++.   ..++..+...| .+.+..+.-.+...+.++....
T Consensus       198 ~l~~~~~~~---lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~  270 (734)
T KOG1061|consen  198 ELNPQLINK---LLEALNECTEWGQIFILDCLAEYVPKDSREA---EDICERLTPRL-QHANSAVVLSAVKVILQLVKYL  270 (734)
T ss_pred             cccHHHHHH---HHHHHHHhhhhhHHHHHHHHHhcCCCCchhH---HHHHHHhhhhh-ccCCcceEeehHHHHHHHHHHH
Confidence            111111222   222222222223333334444332210 011   11233333334 4444444444444444444332


Q ss_pred             CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH----------------------HHHH----HhcC--
Q 015537          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK----------------------IQAV----IEAG--  285 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~----------------------~~~~----~~~~--  285 (405)
                      +..........-+.++.++.+.. +++--++.-+.-+....++.                      .+.+    .+.+  
T Consensus       271 ~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~  349 (734)
T KOG1061|consen  271 KQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLA  349 (734)
T ss_pred             HHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHH
Confidence            22111222233333333333222 33322222222221111110                      0000    0001  


Q ss_pred             -ChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015537          286 -VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (405)
Q Consensus       286 -~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (405)
                       ++.-+...-..-+.+....++++||+++..-+..      .+.++.|+.++... ...+..+++-.+.++....|...+
T Consensus       350 qvl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP~~~~  422 (734)
T KOG1061|consen  350 QVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRKYPNKYE  422 (734)
T ss_pred             HHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCCCchh
Confidence             2233333334457788889999999998543322      57899999999988 778888999999999886665333


Q ss_pred             HHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          365 VIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       365 ~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      .     +++.+..-+.+-    .+|+.|..-.|.||..
T Consensus       423 ~-----vv~~l~~~~~sl----~epeak~amiWilg~y  451 (734)
T KOG1061|consen  423 S-----VVAILCENLDSL----QEPEAKAALIWILGEY  451 (734)
T ss_pred             h-----hhhhhccccccc----CChHHHHHHHHHHhhh
Confidence            2     344444444444    4568999999998854

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.41  E-value=8.1e-06  Score=76.99  Aligned_cols=261  Identities=17%  Similarity=0.157  Sum_probs=166.5

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCC-CCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      +...+..|++..+.++..|+.....++.--. -.....+...|  ..|.+.|.... |++.-..+.++..|.+. ...+.
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~y-pEvLgsil~Ai~~I~sv-~~~~~  681 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDY-PEVLGSILKAICSIYSV-HRFRS  681 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCccc-HHHHHHHHHHHHHHhhh-hcccc
Confidence            5677888899999999998876655531100 01112222333  23566666666 77765555555554442 11110


Q ss_pred             -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          154 -VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       154 -~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                       .-=-.|++|.|...|++....++.+.+..++.||..+|+....---..+--.|++.| .+.+.+++++|..++..+++.
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhh
Confidence             000138999999999999999999999999999988775322111112334577777 778999999999999999886


Q ss_pred             C-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          233 K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       233 ~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      - |       ..++..|+.-|+..+-.-+.....+++-.+..+.-       ..++|.|+.--..++..++...+++++.
T Consensus       761 iGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~f  826 (975)
T COG5181         761 IGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCF  826 (975)
T ss_pred             cCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence            4 2       34566666666666555555555555444432211       1345666666667788888888888877


Q ss_pred             hhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          312 IVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       312 l~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      +..... ...+++  .-+.|.|-+.|.+. ++.-|..|..++..++-
T Consensus       827 mFeyig~~s~dYv--y~itPlleDAltDr-D~vhRqta~nvI~Hl~L  870 (975)
T COG5181         827 MFEYIGQASLDYV--YSITPLLEDALTDR-DPVHRQTAMNVIRHLVL  870 (975)
T ss_pred             HHHHHHHHHHHHH--HHhhHHHHhhhccc-chHHHHHHHHHHHHHhc
Confidence            764222 122222  24678888888888 88888888888887765

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.40  E-value=2.2e-05  Score=68.45  Aligned_cols=230  Identities=15%  Similarity=0.168  Sum_probs=158.4

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC-ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537          123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG-AVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (405)
Q Consensus       123 ~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g-~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~  199 (405)
                      .+++.-+ +-.+.-|..|+.++... ++.|......+ .-..++.+++.  ....++.+++.+++-+.-... +.+.+-+
T Consensus       156 kl~Q~i~-~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K  232 (432)
T COG5231         156 KLSQLID-FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDK  232 (432)
T ss_pred             HHHHHHH-HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHH
Confidence            3444444 56789999999999988 77777665443 44667777776  467899999999998875544 4433222


Q ss_pred             -cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhh---hccHHHHHhhhc--CCChHHHHHHHHHHHHhccC
Q 015537          200 -QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV---SPALPALAHLIH--SNDDEVLTDACWALSYLSDG  273 (405)
Q Consensus       200 -~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~---~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~  273 (405)
                       ...+.-++.+......+.+.+-++..+.|++...|...+...   ..+.+..-.++.  .+|++++.+.-..=+.|...
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence             234556666665556789999999999999995544333222   234444444443  24666655543332222111


Q ss_pred             ---------------------Ch---------hHHHHHHhc--CChHHHHHhcCCCCcc-hHHHHHHHHhHhhcCChhhH
Q 015537          274 ---------------------TN---------DKIQAVIEA--GVFPRLAEFLMHPSPS-VLIPALRTVGNIVTGDDMQT  320 (405)
Q Consensus       274 ---------------------~~---------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~a~~~l~nl~~~~~~~~  320 (405)
                                           ++         .+.+.+.+.  .++..|..+|+++.+. ...-||.-|+.++...++..
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~  392 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN  392 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence                                 10         223333333  5678888999887765 66679999999999999999


Q ss_pred             HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       321 ~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      ..+...|+=..++.+++++ +++||-+|..++--+.
T Consensus       393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i  427 (432)
T COG5231         393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence            9999999999999999999 9999999998887664

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=1e-05  Score=75.12  Aligned_cols=202  Identities=14%  Similarity=0.123  Sum_probs=149.3

Q ss_pred             HHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCChhhhhccHHHHHhhhcCCC
Q 015537          178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSND  256 (405)
Q Consensus       178 ~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~d  256 (405)
                      .++-+|-.++..-...|.-+....+.++|+++| .+++..+..-++..+.|+.-... -.......+++..|+.++.+.|
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            344445555555566777777888899999999 77787788888888888877653 3333444889999999999999


Q ss_pred             hHHHHHHHHHHHHhccCChhHHH-HHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh---hHHHHHhcC----c
Q 015537          257 DEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEYQ----A  328 (405)
Q Consensus       257 ~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~---~~~~~~~~g----~  328 (405)
                      ...+....|.+..+..++.+..+ ..+..-++..++.+..+++..++..++.++.|+.+.+..   ..+..+...    +
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            99999999999999877654422 356667789999999999999999999999999974332   233233222    4


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HhCcHHHHHHHHhc
Q 015537          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM-HVHAFSIIVAFFFM  381 (405)
Q Consensus       329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~lL~~  381 (405)
                      .+.|.+-+... +|-.-.+.|+.|.++++.+.+..+.++ ...++..+..+|..
T Consensus       567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e  619 (743)
T COG5369         567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDE  619 (743)
T ss_pred             HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHH
Confidence            56667777777 777777789999999997777555555 46666666666643

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.38  E-value=7.1e-07  Score=65.00  Aligned_cols=87  Identities=22%  Similarity=0.332  Sum_probs=71.2

Q ss_pred             hHHHHHhc-CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537          287 FPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV  365 (405)
Q Consensus       287 l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (405)
                      ++.|++.| .++++.++..++++||.+-  ++         ..++.|..++.++ ++.+|..|+|+|+.+.         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDE-DPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSS-SHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCC-CHHHHHHHHHHHHHhC---------
Confidence            57888988 8889999999999999552  11         3588999999888 9999999999999882         


Q ss_pred             HHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537          366 IMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       366 l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                        +...++.|.+++.++.+.    .||..|.++||
T Consensus        60 --~~~~~~~L~~~l~~~~~~----~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDE----VVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSH----HHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcH----HHHHHHHhhcC
Confidence              234788899999876544    68999999986

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.38  E-value=6.5e-06  Score=62.48  Aligned_cols=126  Identities=18%  Similarity=0.171  Sum_probs=107.5

Q ss_pred             hhcCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537           71 KLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (405)
Q Consensus        71 ~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~  149 (405)
                      +++-++.|+...+. .+.+.+.+.+.-|.+++-.  .-+...+.+.+++..|++.|..++ +.+...++..|+|+|-+ +
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d-~   89 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLD-K   89 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccC-h
Confidence            44567888887775 6788899888889998642  344566788999999999999999 89999999999999998 8


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 015537          150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (405)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~  200 (405)
                      .+...+.+.+++|.++..++++.......++.++..++-.....++.+...
T Consensus        90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p  140 (173)
T KOG4646|consen   90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP  140 (173)
T ss_pred             HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence            889999999999999999999999999999999999997776677777554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=0.00014  Score=70.95  Aligned_cols=268  Identities=16%  Similarity=0.155  Sum_probs=156.0

Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC
Q 015537           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (405)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~  158 (405)
                      .+-|++++.-++-.|+.++.++.+.+   .+.     .+.|-+-++|++++ +-++..|+.|...+....|+...     
T Consensus       113 knDL~s~nq~vVglAL~alg~i~s~E---mar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e-----  178 (866)
T KOG1062|consen  113 KNDLNSSNQYVVGLALCALGNICSPE---MAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVE-----  178 (866)
T ss_pred             HhhccCCCeeehHHHHHHhhccCCHH---HhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHH-----
Confidence            33445566666666666676665422   222     23566667777766 77777777777777776665443     


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh--------------CCCchhHHHHHHH
Q 015537          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------------GQPKLSMLRNATW  224 (405)
Q Consensus       159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~--------------~~~~~~~~~~a~~  224 (405)
                      .+++....+|.+.+..|.-.++..+..+|..++..-..+.+  .++.++..|.              .-++|-++..++.
T Consensus       179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr  256 (866)
T KOG1062|consen  179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR  256 (866)
T ss_pred             HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence            33555666776666677767777777777665433222221  3333333331              1124556666666


Q ss_pred             HHHHhhcCCCCCChhhhhccHHHHHhhhcCC---ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcch
Q 015537          225 TLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV  301 (405)
Q Consensus       225 ~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v  301 (405)
                      .|.-|-++++. ....+..++..+..-..++   -..|.-+++.++..+-..+.-..      -++..|-++|.+.+..+
T Consensus       257 lLriLGq~d~d-aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrv------lainiLgkFL~n~d~Ni  329 (866)
T KOG1062|consen  257 LLRILGQNDAD-ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRV------LAINILGKFLLNRDNNI  329 (866)
T ss_pred             HHHHhcCCCcc-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHH------HHHHHHHHHhcCCccce
Confidence            66666666322 2222233333332222211   14466666666665543332221      13466777777778888


Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 015537          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFM  381 (405)
Q Consensus       302 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~  381 (405)
                      +.-|+..|...+..++...+.-     =..++.+|+++ |..+|+.|.-.+-.|+..  .++..+     +..|++.|..
T Consensus       330 rYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~m-----v~eLl~fL~~  396 (866)
T KOG1062|consen  330 RYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDP-DVSIKRRALELSYALVNE--SNVRVM-----VKELLEFLES  396 (866)
T ss_pred             eeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHHH-----HHHHHHHHHh
Confidence            8888888888887766544422     34578899999 999999999888888643  334444     3456666665


Q ss_pred             c
Q 015537          382 F  382 (405)
Q Consensus       382 ~  382 (405)
                      .
T Consensus       397 ~  397 (866)
T KOG1062|consen  397 S  397 (866)
T ss_pred             c
Confidence            5

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.37  E-value=4.7e-06  Score=63.21  Aligned_cols=116  Identities=16%  Similarity=0.124  Sum_probs=100.2

Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (405)
Q Consensus       115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (405)
                      .+.+..|+.-.....+.+.+++...-|.|.+.+ |.+-..+.+..+++.++..|..++..+++.++..|+|+|-+.. ..
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~   92 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NA   92 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HH
Confidence            345666666555544489999999999999988 7777888899999999999999999999999999999998776 66


Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      ..+.+.++++.++..+ .++...+...++.++..|+.+.
T Consensus        93 ~~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            8888999999999999 8888889999999999999875

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.37  E-value=6.7e-05  Score=74.31  Aligned_cols=289  Identities=13%  Similarity=0.107  Sum_probs=176.0

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 015537           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI  156 (405)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~  156 (405)
                      .+++.+.+.|.+.++-|+.-|.+=+... .-..+.=-+..++..++++|.+.+ +++|..|..|++-+++.-++.+-.  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le--   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE--   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence            7888899999999999998887766543 222222224467899999999988 999999999999998754433211  


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh----hCCC-chhHHHHHHHHHHHhhc
Q 015537          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL----NGQP-KLSMLRNATWTLSNFCR  231 (405)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l----~~~~-~~~~~~~a~~~l~~l~~  231 (405)
                        .++..|+.-+-++....+..+.-.|......-++.....+...+++.++..+    .... ...++-.++-.+.-+-.
T Consensus        85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence              2344555544444444444444333333323222222223333444444444    3323 33466666666665554


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhcCCC-CcchHHHHHHHH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTV  309 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l  309 (405)
                      ....--..+...++..+..-+.+.-.-|+..++.+|+.++...+ +...     +++..|..-|..+ ++.....-+.+|
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~Iq~l  237 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYIQCL  237 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHHHHH
Confidence            43222222445677777777888888999999999999986543 3222     3445666666443 445555567778


Q ss_pred             hHhhcCChhhHHHHHhcCchHHHHHhh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537          310 GNIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF  379 (405)
Q Consensus       310 ~nl~~~~~~~~~~~~~~g~l~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL  379 (405)
                      +.++.........-. ..++|.+.+..   +.. +.++|+...-++.-+....|..+-..+ ..++..+++.+
T Consensus       238 ~~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~-pei~~l~l~yi  307 (1233)
T KOG1824|consen  238 AAICRQAGHRFGSHL-DKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHV-PEIINLCLSYI  307 (1233)
T ss_pred             HHHHHHhcchhhccc-chhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccc-hHHHHHHHHHh
Confidence            888754332222111 24677888887   555 788999999999888876666554332 23444444444

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=3.7e-05  Score=71.95  Aligned_cols=315  Identities=13%  Similarity=0.109  Sum_probs=195.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+++++.++...|..++..|+..+.+++..-+.+...  .-..+...+.++...++ ..++. ++..+-.+..+-...++
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA  160 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence            4788899999999999999999888876433222211  12334566666666655 44443 33333333222111111


Q ss_pred             -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          154 -VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       154 -~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                       .+-=.+.||.|-.-+...++..+...+.-|..+-.- | ..+++-. ...++-|.++| .+++.+++..+-.+++++-.
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P-~~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-P-DLEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-C-cHHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence             222224556555556667888888777767666322 2 2344321 23566777777 78888999888888887766


Q ss_pred             CC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcc-hHHHHHHHH
Q 015537          232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-VLIPALRTV  309 (405)
Q Consensus       232 ~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-v~~~a~~~l  309 (405)
                      .- ..+........++.++..++++++.++.-|+.-+..+..-.... -...-+|++..+++++.++++. +...+...-
T Consensus       238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVN  316 (675)
T ss_pred             HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence            54 33333355788899999999999999988876666665443332 1244568888888888877663 444333322


Q ss_pred             hHhhc--CChhhHHHHHhcC-chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccc
Q 015537          310 GNIVT--GDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFF  386 (405)
Q Consensus       310 ~nl~~--~~~~~~~~~~~~g-~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  386 (405)
                      +-+..  +.+...+. ++.| +++.+.+.+.++ ....|-++.--+..+-...|.++ ......+++.|..-|+..+++ 
T Consensus       317 ~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~-  392 (675)
T KOG0212|consen  317 GLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDE-  392 (675)
T ss_pred             HHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhH-
Confidence            22221  12211111 5555 889999999998 88888888755555555555532 333578888888888766544 


Q ss_pred             hhhhHHHHHHHHHhhhcc
Q 015537          387 FGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       387 ~~~~vr~~A~~al~n~~~  404 (405)
                          |-..+...+++.|.
T Consensus       393 ----vvl~~L~lla~i~~  406 (675)
T KOG0212|consen  393 ----VVLLALSLLASICS  406 (675)
T ss_pred             ----HHHHHHHHHHHHhc
Confidence                77788888888774

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.00018  Score=62.74  Aligned_cols=267  Identities=16%  Similarity=0.130  Sum_probs=161.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i  197 (405)
                      +..++.++.+.+ |.++..|...+.+++.. .-..-.-.+...++.+.+++....+  .+.|+.+|.|++.+.. .++.+
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~l   79 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKL   79 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHH
Confidence            456788999888 99999999999988876 2111111122467888999987766  7889999999997765 66776


Q ss_pred             HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh-------hhhccHHHHHhhhcCCCh--HHHHHHHHHHH
Q 015537          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-------QVSPALPALAHLIHSNDD--EVLTDACWALS  268 (405)
Q Consensus       198 ~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-------~~~~~l~~L~~ll~~~d~--~v~~~a~~~l~  268 (405)
                      +.. .+..++..+ .++........|..++|+++........       ...++......+..++-.  .-.......++
T Consensus        80 l~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   80 LQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            665 666677777 6666678888999999999875221111       112333344444443321  23345555666


Q ss_pred             HhccCChhHHHHHHhcCCh--HHHHHhcCCCCcch-HHHHHHHHhHhhcCChhhHHHHHhc--CchHHHH----------
Q 015537          269 YLSDGTNDKIQAVIEAGVF--PRLAEFLMHPSPSV-LIPALRTVGNIVTGDDMQTQCVIEY--QALPCLL----------  333 (405)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~v-~~~a~~~l~nl~~~~~~~~~~~~~~--g~l~~L~----------  333 (405)
                      +++.....+ ..+.+...+  ..+..+-+ .+..+ +...+.+|-|+|.....+.. +++.  .++|.|+          
T Consensus       158 nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~s  234 (353)
T KOG2973|consen  158 NLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEELS  234 (353)
T ss_pred             HHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccccC
Confidence            666544332 233333322  22333333 33333 44577788888765544433 3321  2333332          


Q ss_pred             -----------HhhcC----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537          334 -----------NLLSG----NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL  398 (405)
Q Consensus       334 -----------~ll~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a  398 (405)
                                 +++..    .+++.||+.-.-+|.-+|+..+. ++.+.+.|+.|.+-.+-+...+    +++++ ||.-
T Consensus       235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G-Re~lR~kgvYpilRElhk~e~d----ed~~~-ace~  308 (353)
T KOG2973|consen  235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG-REVLRSKGVYPILRELHKWEED----EDIRE-ACEQ  308 (353)
T ss_pred             HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh-HHHHHhcCchHHHHHHhcCCCc----HHHHH-HHHH
Confidence                       22221    12788999999999999875444 6778888888877766554433    36665 4444


Q ss_pred             Hh
Q 015537          399 CL  400 (405)
Q Consensus       399 l~  400 (405)
                      ++
T Consensus       309 vv  310 (353)
T KOG2973|consen  309 VV  310 (353)
T ss_pred             HH
Confidence            33

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=0.00051  Score=65.53  Aligned_cols=307  Identities=15%  Similarity=0.160  Sum_probs=192.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+..+++.+....+.+|.....++.-+..........     .+.+.+.++++... ..-+..+++.+..+..+.  ...
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~-----~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~  168 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE-----YVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE  168 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH-----HHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence            3577778888888999999998888775433222222     24677888888766 677889999999888763  334


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHH-HHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQ-AVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~-a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      .+.+.+++..|...+.+........ +..+.-..+.. ++...-.+.  ..++.++..+ .+....++..+..+.-.+-+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNF-GDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence            5566688899999888855444332 22222222211 121111111  1344445544 56677888887777776665


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      .-+.   ..+.-++|.++.-+..........++..++.+++..+.+.. ..-..++|.+.+.|.+..++++..+..++-.
T Consensus       246 ~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  246 CLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK  321 (569)
T ss_pred             hcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence            5321   12234555555544444677788899999999888877665 5556899999999999999999999988887


Q ss_pred             hhcCCh-hhHHHHH------------------------------hcCchHHHHHhhcCC---CchhHHHHHHHHHHHHhc
Q 015537          312 IVTGDD-MQTQCVI------------------------------EYQALPCLLNLLSGN---YKKSIKKEACWTVSNITA  357 (405)
Q Consensus       312 l~~~~~-~~~~~~~------------------------------~~g~l~~L~~ll~~~---~~~~v~~~a~~~L~nl~~  357 (405)
                      ++.--+ ..++.++                              +.-.+..++.++..+   .+..+++.++-+++|++.
T Consensus       322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~  401 (569)
T KOG1242|consen  322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK  401 (569)
T ss_pred             HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence            774221 1122111                              112233344444322   156788999999999997


Q ss_pred             C--CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537          358 G--NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       358 ~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n  401 (405)
                      -  ++..+...+ -.++|.|-..+...     -|++|..|..||+-
T Consensus       402 LveDp~~lapfl-~~Llp~lk~~~~d~-----~PEvR~vaarAL~~  441 (569)
T KOG1242|consen  402 LVEDPKDLAPFL-PSLLPGLKENLDDA-----VPEVRAVAARALGA  441 (569)
T ss_pred             hhcCHHHHhhhH-HHHhhHHHHHhcCC-----ChhHHHHHHHHHHH
Confidence            3  454443332 23444444444333     36899999999964

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.29  E-value=7.5e-05  Score=69.20  Aligned_cols=188  Identities=26%  Similarity=0.348  Sum_probs=145.5

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (405)
                      ..++.+.+++.+.+ ..++..|++.++.+...           -+++.+..++.+.++.++..++.+|+++-  .+    
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~----  104 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DP----  104 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch----
Confidence            35888999999886 89999999998776543           47899999999999999999999998873  22    


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCCh------------HHHHHH
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD------------EVLTDA  263 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~------------~v~~~a  263 (405)
                           ..+++++..+..+.+..++..+.++|..+-..          ..+..++..+.+.+.            .++..+
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                 25788999996678999999999999988765          335566666665442            344445


Q ss_pred             HHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchh
Q 015537          264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS  343 (405)
Q Consensus       264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~  343 (405)
                      ..+++.+-+           ...++.+...+.+.+..++..+..+++.+....         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            555544421           234678889999888899999999999988655         24567788888888 899


Q ss_pred             HHHHHHHHHHHHhc
Q 015537          344 IKKEACWTVSNITA  357 (405)
Q Consensus       344 v~~~a~~~L~nl~~  357 (405)
                      +|..++.+|+.+-.
T Consensus       229 vr~~~~~~l~~~~~  242 (335)
T COG1413         229 VRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHHHhcccCc
Confidence            99999988888843

>PF05536 Neurochondrin: Neurochondrin

Probab=98.29  E-value=5.1e-05  Score=74.05  Aligned_cols=238  Identities=18%  Similarity=0.128  Sum_probs=162.4

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCc--hHHHHhcCcHHHHHHHhcCCC------CHHHHHHHHHHHHHH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNI  144 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~l~~Li~lL~~~~------~~~~~~~a~~~L~ni  144 (405)
                      ..+...+.+|++.+.+.++-++-.+.+++..++...  .+.+.+.-+.+.+-++|.++.      ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            357888999999888888999999999987652112  234667766888888998732      256788888899988


Q ss_pred             hcCCchhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHH
Q 015537          145 ASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (405)
Q Consensus       145 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~  223 (405)
                      +.. ++....---.+-||.|+..+.+.+. .+...++.+|..++ ..+..+..+.+.|+++.|...+.+  .+.....++
T Consensus        85 ~~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al  160 (543)
T PF05536_consen   85 CRD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL  160 (543)
T ss_pred             cCC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence            885 4443211112679999999988766 99999999999999 455578889999999999999954  555677777


Q ss_pred             HHHHHhhcCCCC----CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH-HHHHHhcCC----hHHHHHhc
Q 015537          224 WTLSNFCRGKPQ----PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIEAGV----FPRLAEFL  294 (405)
Q Consensus       224 ~~l~~l~~~~~~----~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~----l~~L~~lL  294 (405)
                      .++.+++.....    .....+..+++.+...+...........|..|+.+....+.. .........    ...+..+|
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            778777765432    122223456666777776666667778888888887655311 111122222    33344555


Q ss_pred             CCC-CcchHHHHHHHHhHhhc
Q 015537          295 MHP-SPSVLIPALRTVGNIVT  314 (405)
Q Consensus       295 ~~~-~~~v~~~a~~~l~nl~~  314 (405)
                      ++. .+.-|.+++...+.+..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            443 45566667666666653

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.28  E-value=1.1e-05  Score=70.32  Aligned_cols=189  Identities=17%  Similarity=0.114  Sum_probs=120.4

Q ss_pred             cCCChHHHHHHHHHHHHhhccC-CCCchHHHHh--cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC
Q 015537           83 WSNDSGVQYECTTQFRKLLSIE-RSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (405)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~--~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g  159 (405)
                      .+.|++.+.+|+..|+.++.+. .......++.  ..++..++..+.+.. ..+...|+.++..++..........++ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            4578999999999999998765 1122223322  145567777777666 689999999999998864444444433 5


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC--CCC
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPP  237 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~--~~~  237 (405)
                      ++|.|+..+.++...+++.|..+|..++...+.....+     +..+...+ .+.++.++..++..+..+....+  ...
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            78999999999999999999999999997655111111     23334444 88999999999999998887765  111


Q ss_pred             h---hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 015537          238 F---DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ  279 (405)
Q Consensus       238 ~---~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~  279 (405)
                      .   ..+..+++.+..++.+.+++|+..+-.++..+....++...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            1   12356888899999999999999999998888665555444

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.27  E-value=4.9e-05  Score=77.04  Aligned_cols=267  Identities=15%  Similarity=0.144  Sum_probs=176.8

Q ss_pred             HHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC---ch
Q 015537           75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---SE  150 (405)
Q Consensus        75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~---~~  150 (405)
                      ++.+...+++ ...+.+..|+..|..+...-    .++..-.-++|.++.++.++. .++|..|+.+|+.+...-   +.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i----~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYI----DDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc----chHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4555555554 45678888998888885322    122233457999999999998 899999999988865531   11


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC------------------Chhh-----------HHHHHhc
Q 015537          151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGD------------------SPRC-----------RDLVLSQ  200 (405)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~------------------~~~~-----------~~~i~~~  200 (405)
                      .-..+.-.=++|.|-.++.+ ....++-.-+.+|+.||..                  .+..           ...+ ..
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-~~  577 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL-HH  577 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHH-HH
Confidence            11223333567888888887 3444554445555555421                  1100           0000 01


Q ss_pred             CChHH-HHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 015537          201 GGLVP-LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ  279 (405)
Q Consensus       201 ~~i~~-L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~  279 (405)
                       .+.. ...++ .++++-|++..+..|.-||.-....  ....-+++.|..+|+..|+..+..-...|..++-.-.-   
T Consensus       578 -~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---  650 (1431)
T KOG1240|consen  578 -TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---  650 (1431)
T ss_pred             -HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---
Confidence             1222 33334 6667788888888888888754211  12235788999999999999998888888766532111   


Q ss_pred             HHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       280 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      .-++..++|.|.+-|.+..+-|...|+.++.-++...--....++  .+++....+|-++ +.-||..+|..|..++.
T Consensus       651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            113456789999999999999999999999999865543333343  3577788889999 99999999998888764

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.25  E-value=1.6e-06  Score=56.77  Aligned_cols=55  Identities=13%  Similarity=0.224  Sum_probs=45.7

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          342 KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      +.+|..|+|+|++++...++..+. ....++|.|+.+|.+++     +.||..|+|+|+|.
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~-----~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDD-----DSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSS-----HHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCC-----HHHHHHHHHHHhcC
Confidence            478999999999998888887666 45789999999996542     36999999999984

...

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.24  E-value=3.6e-06  Score=61.25  Aligned_cols=87  Identities=29%  Similarity=0.421  Sum_probs=70.0

Q ss_pred             HHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537          118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (405)
Q Consensus       118 l~~Li~lL-~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (405)
                      +|.|++.| ++++ +.++..|+++|+.+..  +         .+++.|+.+++++++.++..++++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 5555 9999999999995522  1         35899999999999999999999999883         


Q ss_pred             HHhcCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (405)
Q Consensus       197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~  227 (405)
                        ....++.|..++.++.+..++..++++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12378889999966667778888888874

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=9.8e-05  Score=69.22  Aligned_cols=268  Identities=15%  Similarity=0.095  Sum_probs=170.9

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC---CChhh
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG---DSPRC  193 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~---~~~~~  193 (405)
                      ++|.|-+-+...+ +..|...+.-|.-+-.. |...-.-.-..+++-|...|.+++++|+..+-.+++++..   .+|..
T Consensus       168 ~ipLL~eriy~~n-~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s  245 (675)
T KOG0212|consen  168 FIPLLRERIYVIN-PMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS  245 (675)
T ss_pred             HHHHHHHHHhcCC-chHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence            3444444444445 67777666656555443 3222111112567788889999999999888888887652   22221


Q ss_pred             HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChH-HHHHHHHH---HHH
Q 015537          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE-VLTDACWA---LSY  269 (405)
Q Consensus       194 ~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~---l~~  269 (405)
                      -   --...++.++..+ .++++.++..|+.-+..+..-.+..-.....+++..+++++.++++. +...+...   +..
T Consensus       246 ~---d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~  321 (675)
T KOG0212|consen  246 M---DYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK  321 (675)
T ss_pred             c---Ccccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence            1   1123566777777 78888888877776777776656666667788888888888777664 33333222   222


Q ss_pred             hccCChhHHHHHHhc-CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHH
Q 015537          270 LSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA  348 (405)
Q Consensus       270 l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a  348 (405)
                      +.........  ++. .+++.+...+.++..+.+..++.-+..+-...+.+.- .....+.+.|+.-|++. +..+...+
T Consensus       322 l~s~~~~~~~--id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~-sd~vvl~~  397 (675)
T KOG0212|consen  322 LVSSERLKEE--IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDR-SDEVVLLA  397 (675)
T ss_pred             HHhhhhhccc--cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCc-hhHHHHHH
Confidence            3221111111  222 4577888888999899999999888888765554433 33446889999999998 88899999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          349 CWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      ...+.++|......       |.++.+.++|.....+.  -.++..+.+.+..+|
T Consensus       398 L~lla~i~~s~~~~-------~~~~fl~sLL~~f~e~~--~~l~~Rg~lIIRqlC  443 (675)
T KOG0212|consen  398 LSLLASICSSSNSP-------NLRKFLLSLLEMFKEDT--KLLEVRGNLIIRQLC  443 (675)
T ss_pred             HHHHHHHhcCcccc-------cHHHHHHHHHHHHhhhh--HHHHhhhhHHHHHHH
Confidence            99999998743321       44666666666554431  234556666666666

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.23  E-value=8.9e-05  Score=73.45  Aligned_cols=214  Identities=15%  Similarity=0.142  Sum_probs=143.4

Q ss_pred             CHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 015537          130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (405)
Q Consensus       130 ~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~  209 (405)
                      +..++.-|+-.||.+..+-+..    -..+.-..++..+.+++.+++..|..+||+++.++-+        ..++.++..
T Consensus       832 ~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil~q  899 (1233)
T KOG1824|consen  832 SDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFILEQ  899 (1233)
T ss_pred             chhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHHHH
Confidence            3678888888888886653221    1234556788899999999999999999999875432        145666666


Q ss_pred             hhCCCchhHHHHHHHHHHHhhcC-CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH
Q 015537          210 LNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (405)
Q Consensus       210 l~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  288 (405)
                      +...+  .=+.-.+..|-.+... ........+..+...|.+......+..+.-.+.||+.|+..+++.        .+|
T Consensus       900 i~sqp--k~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------Llp  969 (1233)
T KOG1824|consen  900 IESQP--KRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLP  969 (1233)
T ss_pred             Hhcch--HhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHH
Confidence            63322  1122222222222221 122112222344444444445556777888999999999877764        468


Q ss_pred             HHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015537          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM  367 (405)
Q Consensus       289 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (405)
                      .|-..+.++.+..+..++.++--.....+.-.+.++ ...+..++.++.++ +..||+.|.-++...+.+.|..+..+.
T Consensus       970 kL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~l-k~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIrDll 1046 (1233)
T KOG1824|consen  970 KLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLL-KQQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIRDLL 1046 (1233)
T ss_pred             HHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHH-HHHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHHHHH
Confidence            999999999999898888877665554444444333 35677889999999 999999999999999888888776554

>PF05536 Neurochondrin: Neurochondrin

Probab=98.18  E-value=0.00024  Score=69.39  Aligned_cols=236  Identities=19%  Similarity=0.142  Sum_probs=163.8

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh---HHHHHhcCChHHHHHhhhCC------CchhHHHHHHHHHHHhh
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFC  230 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~L~~~l~~~------~~~~~~~~a~~~l~~l~  230 (405)
                      .+...+.+|+..+..=+-.++..+.+++..++..   +..+.+.=+...+-++|...      +....+.-++..|+.+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            3566777888877667777888888888665532   23455554566666666331      34567788888899999


Q ss_pred             cCCCCCChhhhhccHHHHHhhhcCCCh-HHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537          231 RGKPQPPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (405)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l  309 (405)
                      ..+.-.....+.+-+|.|+..+.+.+. .+..+++.+|..++ ..++..+.+++.|.++.|.+.+.+ .+.....|+.++
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            865444455667899999999977766 99999999999999 566667889999999999999977 666788899999


Q ss_pred             hHhhcCChhhHHH---HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-----HHHHHHhCcHHHHHHHHhc
Q 015537          310 GNIVTGDDMQTQC---VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-----IQVIMHVHAFSIIVAFFFM  381 (405)
Q Consensus       310 ~nl~~~~~~~~~~---~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~l~~~~~i~~L~~lL~~  381 (405)
                      .+++.......-.   -.-..+++.+...+... ....+-++|-.|+++....+..     ...-+-..+...|..+|.+
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            9988654411100   00113566677777666 6677888999999998754211     1122345566677777776


Q ss_pred             ccccchhhhHHHHHHHHHhhh
Q 015537          382 FLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       382 ~~~~~~~~~vr~~A~~al~n~  402 (405)
                      .-.+    .-|..|..+.+.+
T Consensus       243 r~~~----~~R~~al~Laa~L  259 (543)
T PF05536_consen  243 RLTP----SQRDPALNLAASL  259 (543)
T ss_pred             CCCH----HHHHHHHHHHHHH
Confidence            6444    6677776665543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.15  E-value=3.7e-06  Score=55.07  Aligned_cols=55  Identities=27%  Similarity=0.444  Sum_probs=47.0

Q ss_pred             cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 015537          299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (405)
Q Consensus       299 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (405)
                      +.++..|+++||+++...+..... ....+++.|..+|.++ ++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            468999999999998877766665 4447999999999998 889999999999986

...

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.00011  Score=70.28  Aligned_cols=215  Identities=13%  Similarity=0.091  Sum_probs=144.9

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC------CCC
Q 015537          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP------QPP  237 (405)
Q Consensus       164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~------~~~  237 (405)
                      |..+..+.+..++.+|+.+|..|..... ....     .....++.+ .+.+..++..|+..++-...-.|      ...
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            5666666777777777777777665222 2122     234556667 77788888877555544433321      122


Q ss_pred             hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH-----------------------------
Q 015537          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP-----------------------------  288 (405)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~-----------------------------  288 (405)
                      ......++..+...+.+-...|+..|..+|+.+-.-+++.+...++..++.                             
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a  355 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA  355 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence            233456777777888877888899999998888776666655555544444                             


Q ss_pred             ---------------------HHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537          289 ---------------------RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (405)
Q Consensus       289 ---------------------~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~  347 (405)
                                           .++.-|.+.-.+|+.+|+..++.++...+....     ..++.|++++++. ...||..
T Consensus       356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~VRL~  429 (823)
T KOG2259|consen  356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEVVRLK  429 (823)
T ss_pred             cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHHHHHH
Confidence                                 222222222236899999999999998876655     4578899999999 8999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          348 ACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      |.++|.-|+.+      ..+++..++.++..|...     .++||.++.-.|+|+
T Consensus       430 ai~aL~~Is~~------l~i~eeql~~il~~L~D~-----s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  430 AIFALTMISVH------LAIREEQLRQILESLEDR-----SVDVREALRELLKNA  473 (823)
T ss_pred             HHHHHHHHHHH------heecHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhc
Confidence            99999999754      223556677777778655     347998888777764

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.00055  Score=66.84  Aligned_cols=139  Identities=19%  Similarity=0.184  Sum_probs=88.8

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 015537          123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG  202 (405)
Q Consensus       123 ~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~  202 (405)
                      +...+.. +-+|..|+.+|..+-+-++++...+     +..+-.+|.+.++-|.-.|+.++-.+|-+.-   +.+  ++-
T Consensus       150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn  218 (968)
T KOG1060|consen  150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN  218 (968)
T ss_pred             HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence            3444455 8889999999999888777776644     3455667888889999999999888874432   222  234


Q ss_pred             hHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCCh----------------------------hhhhccHHHHHhhhc
Q 015537          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF----------------------------DQVSPALPALAHLIH  253 (405)
Q Consensus       203 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~----------------------------~~~~~~l~~L~~ll~  253 (405)
                      ...+.++| .+-+.-=+..++.+|...|+.. +.+..                            ....-++...-.+|.
T Consensus       219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~  297 (968)
T KOG1060|consen  219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ  297 (968)
T ss_pred             HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence            56666666 4444444555556666556654 22200                            011223444555777


Q ss_pred             CCChHHHHHHHHHHHHhccC
Q 015537          254 SNDDEVLTDACWALSYLSDG  273 (405)
Q Consensus       254 ~~d~~v~~~a~~~l~~l~~~  273 (405)
                      +.++.|...++.++.+++-.
T Consensus       298 S~n~sVVmA~aql~y~lAP~  317 (968)
T KOG1060|consen  298 SRNPSVVMAVAQLFYHLAPK  317 (968)
T ss_pred             cCCcHHHHHHHhHHHhhCCH
Confidence            88888888888888888743

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=0.0014  Score=66.14  Aligned_cols=262  Identities=16%  Similarity=0.213  Sum_probs=172.1

Q ss_pred             hhcCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537           71 KLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (405)
Q Consensus        71 ~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~  149 (405)
                      -++.++-+...+.+ .++.+|..|+.++..+.+.  .+.+..+...|++..|+.+|.+.  |..+..++.+|..+++. +
T Consensus      1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~-~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSN-G 1843 (2235)
T ss_pred             hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC-c
Confidence            34556777777775 6789999999999877653  68889999999999999999765  68899999999999988 6


Q ss_pred             hhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---hhhHHHHH-----------h---------------
Q 015537          150 EHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDS---PRCRDLVL-----------S---------------  199 (405)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~---~~~~~~i~-----------~---------------  199 (405)
                      +......+.|++..+..++- +.++..+.+++..++.+..+.   |..+-.++           .               
T Consensus      1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred             HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence            77777777888877776654 467788888888888765321   11110000           0               


Q ss_pred             --------------c----------------------------------------------------------------C
Q 015537          200 --------------Q----------------------------------------------------------------G  201 (405)
Q Consensus       200 --------------~----------------------------------------------------------------~  201 (405)
                                    .                                                                |
T Consensus      1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred             CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence                          0                                                                0


Q ss_pred             ChHHHHHhhh-CCCchhHHHHHHHHHHHhhcCCCCCChh-hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 015537          202 GLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ  279 (405)
Q Consensus       202 ~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~  279 (405)
                      .++.++.++. .++..........++..|.+..|.-... ---|.+|.++.-+...+..+-..+++.|..|+.+ .-...
T Consensus      2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCD 2082 (2235)
T ss_pred             HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHH
Confidence            0111111111 0111112333333444444444322211 1257778877777766666668888899888854 34566


Q ss_pred             HHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHhhcCC
Q 015537          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DMQTQCVIEYQALPCLLNLLSGN  339 (405)
Q Consensus       280 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~g~l~~L~~ll~~~  339 (405)
                      .+.....+..++..+...- ...--|+.+|-.+...+ ++.....++.|++|+|+.+|+..
T Consensus      2083 AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            6777777777888775433 33446888888777533 45666678999999999999864

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.002  Score=62.25  Aligned_cols=292  Identities=12%  Similarity=0.074  Sum_probs=174.1

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      ..+.+.|.|.|+.-+..|+.++.++.+.+   ....+     -+-+-++|-+++ .+-++..|+.||..+-..+|+..  
T Consensus       114 n~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~--  183 (938)
T KOG1077|consen  114 NSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV--  183 (938)
T ss_pred             HHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc--
Confidence            44444556677777778888888775432   12222     112225565544 35688999999999988766632  


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh------------CCCchhHHHHH
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN------------GQPKLSMLRNA  222 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~------------~~~~~~~~~~a  222 (405)
                       -..+....++.+|.+.+-.+...+...+--|+...++.....+-. .+..|.....            .-+.+-+...+
T Consensus       184 -~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl  261 (938)
T KOG1077|consen  184 -NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL  261 (938)
T ss_pred             -ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence             233678899999999888888888888888887665432221110 1222222210            12356677778


Q ss_pred             HHHHHHhhcCCCCCChhhhhccHHHHHhhhcC----CC---hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC
Q 015537          223 TWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----ND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (405)
Q Consensus       223 ~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~  295 (405)
                      +..|.++=.-...........++..++...+.    .+   .......+.-..+++.+-+..-+.+.  ..+..|-++|+
T Consensus       262 ~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls  339 (938)
T KOG1077|consen  262 LRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLS  339 (938)
T ss_pred             HHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhh
Confidence            88777772221222222333444444444431    11   11222233323333323222222232  34678999999


Q ss_pred             CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 015537          296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII  375 (405)
Q Consensus       296 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  375 (405)
                      +.+..+|.-|+..+..+++.... .+.+-.+  .+.++..|....|..+|+.|.-.|-.+|..  ++.+.+     +..|
T Consensus       340 ~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~I-----V~el  409 (938)
T KOG1077|consen  340 HRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQI-----VAEL  409 (938)
T ss_pred             cccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHH-----HHHH
Confidence            99999999999999999987543 2333333  788999999665999999999999999853  333333     3456


Q ss_pred             HHHHhcccccchhhhHHHHHH
Q 015537          376 VAFFFMFLHFFFGAIIYKLAI  396 (405)
Q Consensus       376 ~~lL~~~~~~~~~~~vr~~A~  396 (405)
                      ++.|.+.     ++.+|++..
T Consensus       410 LqYL~tA-----d~sireeiv  425 (938)
T KOG1077|consen  410 LQYLETA-----DYSIREEIV  425 (938)
T ss_pred             HHHHhhc-----chHHHHHHH
Confidence            6666553     345776543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.06  E-value=2.5e-05  Score=68.06  Aligned_cols=190  Identities=15%  Similarity=0.084  Sum_probs=121.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCC--hhhHHHHHh--cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhcc
Q 015537          169 YSPSDDVREQAVWALGNIAGDS--PRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA  244 (405)
Q Consensus       169 ~~~~~~i~~~a~~~L~nl~~~~--~~~~~~i~~--~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  244 (405)
                      .+.+.+.+..++.-|..++...  ......+..  ...+..+...+ .+....+...++.++..++..-...-......+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            5578889999999999887555  112222221  13445566666 566788999999999999987544444456788


Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh---hhHH
Q 015537          245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD---MQTQ  321 (405)
Q Consensus       245 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~  321 (405)
                      +|.|+..+.++...++..+..+|..++........ +    .++.+...+.+.++.++..++..+..+....+   ....
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            99999999988889999999999999876551111 1    14677778899999999999999999886444   2111


Q ss_pred             H-HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537          322 C-VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV  365 (405)
Q Consensus       322 ~-~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (405)
                      . ..-..+++.+...+.++ ++.+|+.|--++..+....++....
T Consensus       171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~  214 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAES  214 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred             ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhcc
Confidence            1 11135788999999999 9999999988888886655554433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.03  E-value=2.8e-05  Score=73.52  Aligned_cols=152  Identities=19%  Similarity=0.197  Sum_probs=107.1

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH--HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CC
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QP  236 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~--~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~  236 (405)
                      ++..++.+|+++.+.++.+++...+.|+.--..|.  ..+...|.  .|...| ...++++.-.++.++..+..... ..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence            56778889999999999999999998873211111  12222222  244444 66688888888888777765431 11


Q ss_pred             ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      -..-+.+++|.|...|.+....|..+....++.++..+++.+..--=..+.--|++.|.+.+.+++..|..++|-|+.
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            112346899999999999999999999999999998877643211101234457888888899999999999999874

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.00017  Score=68.83  Aligned_cols=273  Identities=17%  Similarity=0.117  Sum_probs=167.7

Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHH---HHHHHHh--cCCchhH
Q 015537           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAA---WALTNIA--SGTSEHT  152 (405)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~---~~L~ni~--~~~~~~~  152 (405)
                      +.......|+.++..|+..+-.+..+.  ..     ..-+....++.+++++ .+++..|+   |.++|..  ....+..
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL-----~~~~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KL-----SKACYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccc--cc-----cHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            455555566666666666655552211  00     1113667788898887 89998884   5566665  1111222


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----CCCchhHHHHHHHHHHH
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----GQPKLSMLRNATWTLSN  228 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~----~~~~~~~~~~a~~~l~~  228 (405)
                      +.-....++..++..+.+-+..|+..|+.+||.+-.-+.++-...++.    .++.-+.    .++.+.-...-    ..
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRkr~ahkrpk~l~s~----Ge  346 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRKRTAHKRPKALYSS----GE  346 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhhhhcccchHHHHhc----CC
Confidence            211222567788889998899999999999998865444332222222    1222110    01111111000    01


Q ss_pred             hhcCC------CCC------ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC
Q 015537          229 FCRGK------PQP------PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (405)
Q Consensus       229 l~~~~------~~~------~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  296 (405)
                      .++++      |..      ....-.|....++.-+.+.--+|+.+|+..++.|+...+....     ..+..|++++.+
T Consensus       347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfND  421 (823)
T KOG2259|consen  347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFND  421 (823)
T ss_pred             cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhcc
Confidence            11111      111      1112256667777777766689999999999999988877654     346899999999


Q ss_pred             CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHH
Q 015537          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV  376 (405)
Q Consensus       297 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~  376 (405)
                      ....++..|+.+|..|+.+      ..++..-++.+...|.+. +..+|.+.--.|++.-..+.+.+..++     ..|.
T Consensus       422 E~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m~v-----~~lL  489 (823)
T KOG2259|consen  422 EIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDMCV-----AHLL  489 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHHH-----HHHH
Confidence            8899999999999998854      123445678888999888 899999988888877556666555443     3455


Q ss_pred             HHHhccc
Q 015537          377 AFFFMFL  383 (405)
Q Consensus       377 ~lL~~~~  383 (405)
                      +.|..+.
T Consensus       490 ~~L~kyP  496 (823)
T KOG2259|consen  490 KNLGKYP  496 (823)
T ss_pred             HHhhhCC
Confidence            5555553

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00028  Score=68.29  Aligned_cols=127  Identities=21%  Similarity=0.278  Sum_probs=87.9

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHH--HhccCChhHHHHHHhcCChHHHHHh-cCCCCcchHHHHHHHHhHhhcCChhh
Q 015537          243 PALPALAHLIHSNDDEVLTDACWALS--YLSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQ  319 (405)
Q Consensus       243 ~~l~~L~~ll~~~d~~v~~~a~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~l~nl~~~~~~~  319 (405)
                      ..=+.+-+++.+.||-++.....+++  +...++.         +++..|+.. .++.+.+|+..|+.+||-++..++++
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence            44456777888888888877766543  3333332         344555555 46778899999999999999877743


Q ss_pred             HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHH
Q 015537          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIW  397 (405)
Q Consensus       320 ~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~  397 (405)
                               ++..+.+|..++++.||-.++.+|+-.|+|+  .+.+      +++.+|    .++...    .||+-|+.
T Consensus       590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl----~~D~~~----fVRQgAlI  646 (929)
T KOG2062|consen  590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPL----TSDPVD----FVRQGALI  646 (929)
T ss_pred             ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhh----hcChHH----HHHHHHHH
Confidence                     5667888887779999999999999999864  3322      122233    233222    59999988


Q ss_pred             HHhh
Q 015537          398 LCLV  401 (405)
Q Consensus       398 al~n  401 (405)
                      +++-
T Consensus       647 a~am  650 (929)
T KOG2062|consen  647 ALAM  650 (929)
T ss_pred             HHHH
Confidence            8763

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.0052  Score=56.43  Aligned_cols=243  Identities=13%  Similarity=0.118  Sum_probs=169.6

Q ss_pred             hhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccC----CCC----chHHHHhcCcHHHHHHHhcCCC-----CHHHHHHH
Q 015537           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE----RSP----PIEEVIRSGVVPRFVEFLLRED-----YPQLQFEA  137 (405)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~----~~~----~~~~~~~~g~l~~Li~lL~~~~-----~~~~~~~a  137 (405)
                      .+++++.++++|.++|.++-...+..+..+...+    ..+    -++.+++.++++.|++-+..-+     ...-...+
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            3577899999999999999999999998885432    112    2567788999999999886533     12235667


Q ss_pred             HHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----
Q 015537          138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----  211 (405)
Q Consensus       138 ~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~----  211 (405)
                      +.++-|+..-.+.....+++.|.+..|+.-+..  +...-...|..+++-+..++.+.+...-...++..++..+.    
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            788899999889999999999988888874443  44556778888888888888878788878889999988873    


Q ss_pred             CC----CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh--hHHHHHHhcC
Q 015537          212 GQ----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG  285 (405)
Q Consensus       212 ~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~  285 (405)
                      ++    ...+...+...+|+.+.........-....++....-+++. ....+..++..|-+...+.+  ..+..+++.+
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            12    13456666666666666554333333335566655555554 55667888889988887765  6677788887


Q ss_pred             ChHHHHHhcC-CCC---------cchHHHHHHHHhHhhc
Q 015537          286 VFPRLAEFLM-HPS---------PSVLIPALRTVGNIVT  314 (405)
Q Consensus       286 ~l~~L~~lL~-~~~---------~~v~~~a~~~l~nl~~  314 (405)
                      ++..+..+.- .+.         ...-...+.+|+.+..
T Consensus       362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            7777766653 221         1334455666665554

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.014  Score=59.52  Aligned_cols=309  Identities=14%  Similarity=0.099  Sum_probs=183.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+..|+..+.+.|..++-.|+.-+.++.+.-  | . .+. ..++...++++...+.+..=..|+.+|+.++...----.
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p-~-~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P-P-ELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccC--c-H-HHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            3667777888889999999999999998754  3 1 111 224666666666544345556888899988875221111


Q ss_pred             HHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh----hCCCchhHHHH
Q 015537          154 VVIDHGAVPIFVKLLYS--------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL----NGQPKLSMLRN  221 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~--------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l----~~~~~~~~~~~  221 (405)
                      .+.  .++|.++.-|.-        ....|++.|+++++-++......  .+ + +.+..|...|    .-+.+..+++.
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l-~-p~l~~L~s~LL~~AlFDrevncRRA  490 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL-K-PVLQSLASALLIVALFDREVNCRRA  490 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh-h-HHHHHHHHHHHHHHhcCchhhHhHH
Confidence            111  345555555532        35678999999988888544321  11 1 1222222222    25667888999


Q ss_pred             HHHHHHHhhcCCCCC----Chh-----------------------hhhccHHHHH-hh----hcCCChHHHHHHHHHHHH
Q 015537          222 ATWTLSNFCRGKPQP----PFD-----------------------QVSPALPALA-HL----IHSNDDEVLTDACWALSY  269 (405)
Q Consensus       222 a~~~l~~l~~~~~~~----~~~-----------------------~~~~~l~~L~-~l----l~~~d~~v~~~a~~~l~~  269 (405)
                      |..++-......++.    ...                       ...+....++ ++    +.+=|+.++..+.|+|..
T Consensus       491 AsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~  570 (1133)
T KOG1943|consen  491 ASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHK  570 (1133)
T ss_pred             HHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence            999888666543221    100                       0122222222 22    234489999999999999


Q ss_pred             hccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhH---HHHHh---cCc---hHHH-HHhhcCC
Q 015537          270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT---QCVIE---YQA---LPCL-LNLLSGN  339 (405)
Q Consensus       270 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~---~~~~~---~g~---l~~L-~~ll~~~  339 (405)
                      |+...++.    ...+.++.+++...+.+...+..+..+.|.+..+.....   ..+.+   .+.   ++.+ ...+..+
T Consensus       571 Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg  646 (1133)
T KOG1943|consen  571 LSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRG  646 (1133)
T ss_pred             HHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccc
Confidence            98766543    345678888888888888888777777777664322111   10110   121   2222 2222222


Q ss_pred             CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          340 YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       340 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      ...-++...+..+-++........+..+-.+....+.+.+...      ..+|..|.|+++-+|
T Consensus       647 ~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~------n~i~~~av~av~~l~  704 (1133)
T KOG1943|consen  647 QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP------NQIRDAAVSAVSDLV  704 (1133)
T ss_pred             hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch------HHHHHHHHHHHHHHH
Confidence            2245667777888888776665555555555555555555221      169999999999887

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.87  E-value=9.8e-05  Score=54.19  Aligned_cols=68  Identities=16%  Similarity=0.341  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 015537          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (405)
Q Consensus       133 ~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~  200 (405)
                      ++...+.+|+|++..++..++.+.+.|++|.++..-.  ..+|-+++.|+|++.|++.++++.++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3667889999999999999999999999999998654  4689999999999999999999988777643

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.85  E-value=0.00066  Score=59.47  Aligned_cols=226  Identities=13%  Similarity=0.099  Sum_probs=147.0

Q ss_pred             CChHHHHHHHHHHHHhhccCCCCchHHH-HhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhC-CCh
Q 015537           85 NDSGVQYECTTQFRKLLSIERSPPIEEV-IRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDH-GAV  161 (405)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~-~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~~~~~~-g~i  161 (405)
                      =++-++..|++++.++...  .+..... .+...-..+++++++.- ..++|+..+.++.-++.. +++.+.+-.- ..+
T Consensus       161 i~~lTrlfav~cl~~l~~~--~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dli  237 (432)
T COG5231         161 IDFLTRLFAVSCLSNLEFD--VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDLI  237 (432)
T ss_pred             HHHHHHHHHHHHHhhhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence            3455777777888777542  2333332 24455677888887632 268999999999999887 5555333221 456


Q ss_pred             HHHHHhhCCC-CHHHHHHHHHHHHHhhCCCh--hhHHHHHhcCChHHHHHhhhC--CCchhHHHHHHHHHHHhhc-----
Q 015537          162 PIFVKLLYSP-SDDVREQAVWALGNIAGDSP--RCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCR-----  231 (405)
Q Consensus       162 ~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~--~~~~~i~~~~~i~~L~~~l~~--~~~~~~~~~a~~~l~~l~~-----  231 (405)
                      ..|+++.+.. ...+-+.++..+.|++...|  ....... .|-+.+-++.|..  ..|+++....-..=+.|..     
T Consensus       238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            6777777653 56788899999999987442  2222222 3334455555532  2355544333222221111     


Q ss_pred             -----------------CCCCCChhh-----------hhccHHHHHhhhcCCChH-HHHHHHHHHHHhccCChhHHHHHH
Q 015537          232 -----------------GKPQPPFDQ-----------VSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVI  282 (405)
Q Consensus       232 -----------------~~~~~~~~~-----------~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~  282 (405)
                                       .++.....+           ...++..|.++++..++. ...-||.-+..+....++....+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence                             111111111           135677788888887655 667788888999989999888889


Q ss_pred             hcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       283 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      +.|+-..++.++.+++++++-.|+.++..+..
T Consensus       397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            99999999999999999999999999877653

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.85  E-value=4.9e-05  Score=46.13  Aligned_cols=39  Identities=38%  Similarity=0.758  Sum_probs=36.0

Q ss_pred             chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015537          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (405)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~  187 (405)
                      ++.+..+++.|+++.|+.++.+++++++..++|+|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            457788899999999999999999999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.00011  Score=67.75  Aligned_cols=310  Identities=15%  Similarity=0.118  Sum_probs=167.0

Q ss_pred             CHHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC----
Q 015537           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG----  147 (405)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~----  147 (405)
                      ........+.+.  -..+++++.++|.-++..   -.........+...+...+.... +.++..++.++..+..+    
T Consensus       254 ~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~  329 (728)
T KOG4535|consen  254 SGSDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQ  329 (728)
T ss_pred             chhhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhh
Confidence            455566666653  346888888888766421   11111112222333333444555 89999999888776432    


Q ss_pred             -CchhHHHHHhCCChHHH------HHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh---hCCCch
Q 015537          148 -TSEHTKVVIDHGAVPIF------VKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---NGQPKL  216 (405)
Q Consensus       148 -~~~~~~~~~~~g~i~~L------~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l---~~~~~~  216 (405)
                       .|+..+.-+..|.+-..      -..+ .+..+..+...+.++.+|.......    +..|--...+.++   .++++.
T Consensus       330 ~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~~~~  405 (728)
T KOG4535|consen  330 YKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN----LPNDRQTLCITFLLGCNDSKNR  405 (728)
T ss_pred             cCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC----CCCcchhhhHHHHhcccchHHH
Confidence             22222222222211111      0111 2234556667777777775322110    0111111111222   133455


Q ss_pred             hHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC----Ch---hHHHHHHhcCChH
Q 015537          217 SMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----TN---DKIQAVIEAGVFP  288 (405)
Q Consensus       217 ~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~---~~~~~~~~~~~l~  288 (405)
                      -++..+..++..+.-++ ...+...+..+...+...+.+..-..+..+.|+++++++.    -+   .....+.. -.+.
T Consensus       406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~  484 (728)
T KOG4535|consen  406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLL  484 (728)
T ss_pred             HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHH
Confidence            56777777777777765 3344445566666666666666677899999999999853    11   11111111 1122


Q ss_pred             HHHHhc---CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHH----HHHhhc---CCCchhHHHHHHHHHHHHhcC
Q 015537          289 RLAEFL---MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC----LLNLLS---GNYKKSIKKEACWTVSNITAG  358 (405)
Q Consensus       289 ~L~~lL---~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~----L~~ll~---~~~~~~v~~~a~~~L~nl~~~  358 (405)
                      .++..-   ......|+..++++|||+..-    .+.+.+.++-+.    +..++.   .+...+||-.+|++++|+..+
T Consensus       485 ~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn  560 (728)
T KOG4535|consen  485 KMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN  560 (728)
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence            333222   234678999999999999852    222333322111    112222   222678999999999999864


Q ss_pred             CHHHHH-HHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537          359 NREQIQ-VIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       359 ~~~~~~-~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                      ..--.+ .=+..-+++.|+.++....+.    +||-.|+-||+
T Consensus       561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NF----KVRi~AA~aL~  599 (728)
T KOG4535|consen  561 PALPLQTAPWASQAFNALTSLVTSCKNF----KVRIRAAAALS  599 (728)
T ss_pred             ccccccCCCchHHHHHHHHHHHHHhccc----eEeehhhhhhc
Confidence            221112 123456788899998887776    78888877765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.82  E-value=0.0017  Score=66.41  Aligned_cols=233  Identities=15%  Similarity=0.118  Sum_probs=150.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccC-CCCchHH-HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIE-RSPPIEE-VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--  149 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~-~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~--  149 (405)
                      .+|-++.++..+...+|..|+..|..++..= +-++.+. +.-.-++|.|-.++.+++...++..-+.+|+.+|..-.  
T Consensus       463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF  542 (1431)
T KOG1240|consen  463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF  542 (1431)
T ss_pred             hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence            3688888888888999999999999987542 2333443 44455789999999874435667666667766654211  


Q ss_pred             -hhHHHHHhC-------------------------CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 015537          150 -EHTKVVIDH-------------------------GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL  203 (405)
Q Consensus       150 -~~~~~~~~~-------------------------g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i  203 (405)
                       +..+.+...                         ++=+.+..+|.++.+.|+...+..|+-||..-..   .-...=++
T Consensus       543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iL  619 (1431)
T KOG1240|consen  543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSNDVIL  619 (1431)
T ss_pred             HHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---cccccchH
Confidence             111111111                         1123344455555666666666666666521100   00011135


Q ss_pred             HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  283 (405)
Q Consensus       204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  283 (405)
                      ..|+..| ++.|..++......|.-+|-.-..  ....+.++|.|.+-|.+..+-|...|+.++..|+....-....+. 
T Consensus       620 shLiTfL-NDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-  695 (1431)
T KOG1240|consen  620 SHLITFL-NDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-  695 (1431)
T ss_pred             HHHHHHh-cCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-
Confidence            6677777 666887777776666655543211  112357889999999989999999999999999876543333333 


Q ss_pred             cCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       284 ~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                       .+++.+..+|-+++.-+|..++.+|..+..
T Consensus       696 -~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  696 -DILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             -HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence             467788889999999999999999988774

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.81  E-value=0.00099  Score=66.21  Aligned_cols=164  Identities=13%  Similarity=0.095  Sum_probs=122.7

Q ss_pred             chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc
Q 015537          215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (405)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL  294 (405)
                      +..-....=.+++.+..+++      +..++|-+++.+.+.|.++..-.-.-+-.++...++..-.     .+..+..=+
T Consensus        33 ~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl  101 (757)
T COG5096          33 DYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDL  101 (757)
T ss_pred             hHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhc
Confidence            33444455566777777753      5567788888888888998888877777788777743321     357788888


Q ss_pred             CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHH
Q 015537          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSI  374 (405)
Q Consensus       295 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~  374 (405)
                      +++++.+|..|+++++.+=  .++...     .+++++.+++.++ ++.||+.|+.++.++-.-+++   ...+.|.+..
T Consensus       102 ~d~N~~iR~~AlR~ls~l~--~~el~~-----~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~  170 (757)
T COG5096         102 QDPNEEIRGFALRTLSLLR--VKELLG-----NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGLIDI  170 (757)
T ss_pred             cCCCHHHHHHHHHHHHhcC--hHHHHH-----HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccHHHH
Confidence            9999999999999998873  222222     5688899999999 999999999999999765554   3446778888


Q ss_pred             HHHHHhcccccchhhhHHHHHHHHHhhhccC
Q 015537          375 IVAFFFMFLHFFFGAIIYKLAIWLCLVTCCE  405 (405)
Q Consensus       375 L~~lL~~~~~~~~~~~vr~~A~~al~n~~~~  405 (405)
                      +..++...     +|.|..+|..++..++-|
T Consensus       171 l~~l~~D~-----dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         171 LKELVADS-----DPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHhhCC-----CchHHHHHHHHHHHhchh
Confidence            88877544     357999999999888754

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.81  E-value=5.8e-05  Score=45.82  Aligned_cols=38  Identities=37%  Similarity=0.690  Sum_probs=34.7

Q ss_pred             hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       318 ~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      .....+++.|+++.|+.++.++ ++.+++.++|+|+||+
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence            3567788999999999999988 9999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.0098  Score=57.77  Aligned_cols=300  Identities=18%  Similarity=0.142  Sum_probs=182.2

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      +.-+-+++|.++-....+-+...+.-++..+ .+..+.     ++..+..=|.+.+ +....-|+.+++|+.+  .+.+.
T Consensus        75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~e  145 (938)
T KOG1077|consen   75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAE  145 (938)
T ss_pred             chHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHH
Confidence            4456667777665555555555554444221 222222     2444555555666 7889999999999966  45555


Q ss_pred             HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          154 VVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      .+..  =|+   ++|-++  .+-++..++-+|..|...+|.   .+-..+....++.+| ++.+..+...+...+.-|+.
T Consensus       146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk  216 (938)
T KOG1077|consen  146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVK  216 (938)
T ss_pred             Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHH
Confidence            4432  233   555553  456888999999999887774   333345678999999 77788888899999998988


Q ss_pred             CCCCCChhhhhccHHHHHhhhc-------------CCChHHHHHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhcCCC
Q 015537          232 GKPQPPFDQVSPALPALAHLIH-------------SNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHP  297 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~-------------~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~  297 (405)
                      ..|......+...+..|.....             -+.|..+...+++|.++-...+ .....+.  .+++.++...+..
T Consensus       217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~  294 (938)
T KOG1077|consen  217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEP  294 (938)
T ss_pred             cCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccC
Confidence            7654433333333333333221             1357888889999888733222 1111121  3344444444311


Q ss_pred             --Cc-----chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 015537          298 --SP-----SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH  370 (405)
Q Consensus       298 --~~-----~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (405)
                        ..     ..+...+.-.-+++.+-|...+.+.  .....|-.++.+. ...+|--|.-..+.++...+. ++.+-.+ 
T Consensus       295 ~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s-~davK~h-  369 (938)
T KOG1077|consen  295 PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSEFS-IDAVKKH-  369 (938)
T ss_pred             ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhccch-HHHHHHH-
Confidence              11     2233333333445544443333332  3577788899888 889999998888888765333 3444333 


Q ss_pred             cHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          371 AFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       371 ~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                       ...++..|+.+.+-    .||+.|.-.|=-+|
T Consensus       370 -~d~Ii~sLkterDv----SirrravDLLY~mc  397 (938)
T KOG1077|consen  370 -QDTIINSLKTERDV----SIRRRAVDLLYAMC  397 (938)
T ss_pred             -HHHHHHHhccccch----HHHHHHHHHHHHHh
Confidence             77888888866555    69998888877777

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.006  Score=52.32  Aligned_cols=242  Identities=17%  Similarity=0.240  Sum_probs=144.8

Q ss_pred             CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHH
Q 015537           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF  164 (405)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L  164 (405)
                      .-..-++.|+..|+++....   .         +..+.+...+++ ..++.+.+++|+.....           .+++.|
T Consensus        17 ~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~~-----------~Av~~l   72 (289)
T KOG0567|consen   17 QPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQDE-----------DAVPVL   72 (289)
T ss_pred             HHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhccc-----------hhhHHH
Confidence            34567788888888886432   1         455555555554 57778888888887654           578999


Q ss_pred             HHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC------C
Q 015537          165 VKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ------P  236 (405)
Q Consensus       165 ~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~------~  236 (405)
                      +..|.+  ..+-|+..|..+|+.+. +..          ..+.+-++. +++-..+...+..++..+-.....      .
T Consensus        73 ~~vl~desq~pmvRhEAaealga~~-~~~----------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~  140 (289)
T KOG0567|consen   73 VEVLLDESQEPMVRHEAAEALGAIG-DPE----------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSS  140 (289)
T ss_pred             HHHhcccccchHHHHHHHHHHHhhc-chh----------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccC
Confidence            998876  46778889999999986 221          233344444 666667777666676666443210      0


Q ss_pred             Chhhh-------hccHHHHHh-hhcCCChHHHH-HHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537          237 PFDQV-------SPALPALAH-LIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (405)
Q Consensus       237 ~~~~~-------~~~l~~L~~-ll~~~d~~v~~-~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  307 (405)
                      .....       .+-+.-+-. ++..+.+.... .+...|.++  +.++.         +..+++-+..++.-.+..+..
T Consensus       141 p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~Eea---------I~al~~~l~~~SalfrhEvAf  209 (289)
T KOG0567|consen  141 PYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTEEA---------INALIDGLADDSALFRHEVAF  209 (289)
T ss_pred             ccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcHHH---------HHHHHHhcccchHHHHHHHHH
Confidence            11111       122222322 33333333333 333333333  12222         345666677777788999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccc
Q 015537          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFF  386 (405)
Q Consensus       308 ~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  386 (405)
                      ++|.+-+.           -.++.|.+.|... ..+.+|.+|+.+|+.++  +++.+         +.|.+.+...    
T Consensus       210 VfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--~e~~~---------~vL~e~~~D~----  263 (289)
T KOG0567|consen  210 VFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA--DEDCV---------EVLKEYLGDE----  263 (289)
T ss_pred             HHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc--CHHHH---------HHHHHHcCCc----
Confidence            99987532           2356666666543 37899999999999995  33432         3344444332    


Q ss_pred             hhhhHHHHHHHHHh
Q 015537          387 FGAIIYKLAIWLCL  400 (405)
Q Consensus       387 ~~~~vr~~A~~al~  400 (405)
                       ++-|++.+..|+.
T Consensus       264 -~~vv~esc~vald  276 (289)
T KOG0567|consen  264 -ERVVRESCEVALD  276 (289)
T ss_pred             -HHHHHHHHHHHHH
Confidence             3468888877764

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.01  Score=58.33  Aligned_cols=235  Identities=16%  Similarity=0.188  Sum_probs=149.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      -+|.+++.+-+.+.++....-..|-..+-..  +....+    -|.+|-+-|.+++ +.+|..|+++|..|=-       
T Consensus        72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq--pdLALL----SIntfQk~L~DpN-~LiRasALRvlSsIRv-------  137 (968)
T KOG1060|consen   72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ--PDLALL----SINTFQKALKDPN-QLIRASALRVLSSIRV-------  137 (968)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcC--CCceee----eHHHHHhhhcCCc-HHHHHHHHHHHHhcch-------
Confidence            4788888888888888877777776665332  222111    2778888899988 8899888888876532       


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      .++..-++-++-....+..+.|+..|+.+|-.+-.-+++.++.+.      .++..|..+.++.|.-.|+.++-.+|-+.
T Consensus       138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~------e~I~~LLaD~splVvgsAv~AF~evCPer  211 (968)
T KOG1060|consen  138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE------EVIKKLLADRSPLVVGSAVMAFEEVCPER  211 (968)
T ss_pred             hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH------HHHHHHhcCCCCcchhHHHHHHHHhchhH
Confidence            122211233344455678999999999999999877776655433      34444448889999999999999888653


Q ss_pred             CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC---hhH----------------------HHHHHhc---C
Q 015537          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---NDK----------------------IQAVIEA---G  285 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---~~~----------------------~~~~~~~---~  285 (405)
                          ...+.+-...+..+|..-|..=+...+..|...+...   +..                      .....+.   -
T Consensus       212 ----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l  287 (968)
T KOG1060|consen  212 ----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL  287 (968)
T ss_pred             ----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence                3444555566666665555555555555555554320   000                      0000000   1


Q ss_pred             ChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 015537          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN  339 (405)
Q Consensus       286 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~  339 (405)
                      ++...-.+|.+.++.+...++.+...++-.++  ..     ++.+.|+.+|.+.
T Consensus       288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~  334 (968)
T KOG1060|consen  288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSN  334 (968)
T ss_pred             HHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcC
Confidence            23444556778888888888888888875432  11     3466677777654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.036  Score=51.11  Aligned_cols=240  Identities=13%  Similarity=0.143  Sum_probs=161.8

Q ss_pred             HHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc---------hhHHHHHhCCChHH
Q 015537           93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS---------EHTKVVIDHGAVPI  163 (405)
Q Consensus        93 a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~---------~~~~~~~~~g~i~~  163 (405)
                      .++.+.-++..  ..-...+++.++++.|+.+|.+.+ .++-...+..|..++..+.         .....+++.++++.
T Consensus       104 ~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  104 IIQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            34444444321  233346889999999999999999 8999999999988876431         23566888899999


Q ss_pred             HHHhhCCCC------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC-CchhHHHHHHHHHHHhhcCCC-C
Q 015537          164 FVKLLYSPS------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKP-Q  235 (405)
Q Consensus       164 L~~lL~~~~------~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~-~  235 (405)
                      |++-+..-+      ..-...++..+-|+..-.+.+...+.+.|.+..|+..+... .-..-..++...++-+-.+.. .
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence            999887533      33456778888899988888888888999999888866333 344556677777777766642 2


Q ss_pred             CChhhhhccHHHHHhhh---cCC------ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHH
Q 015537          236 PPFDQVSPALPALAHLI---HSN------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (405)
Q Consensus       236 ~~~~~~~~~l~~L~~ll---~~~------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  306 (405)
                      ....---.++..++.-+   +..      ..+...+...+|+.+.-.. .....++...++..+.-+++. ....+..++
T Consensus       261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal  338 (536)
T KOG2734|consen  261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-ANRERFLKGEGLQLMNLMLRE-KKVSRGSAL  338 (536)
T ss_pred             hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-hhhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence            11111123444443332   122      2456677777777665444 344567777777777666665 445677899


Q ss_pred             HHHhHhhcCCh--hhHHHHHhcCchHHHHHhhc
Q 015537          307 RTVGNIVTGDD--MQTQCVIEYQALPCLLNLLS  337 (405)
Q Consensus       307 ~~l~nl~~~~~--~~~~~~~~~g~l~~L~~ll~  337 (405)
                      ++|-.+..|.+  .....+++.+++..+..+..
T Consensus       339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            99999998887  55566777777777766665

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.011  Score=52.31  Aligned_cols=300  Identities=11%  Similarity=0.104  Sum_probs=179.6

Q ss_pred             HHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh----HHHHHhCCChHHHHH
Q 015537           91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH----TKVVIDHGAVPIFVK  166 (405)
Q Consensus        91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~----~~~~~~~g~i~~L~~  166 (405)
                      ..++.+|..+....  ....  +..+..|.|-.-|..++ ..++.-++..++-|..+.+.+    ...+++.|+++.++.
T Consensus        61 tlcVscLERLfkak--egah--lapnlmpdLQrGLiadd-asVKiLackqigcilEdcDtnaVseillvvNaeilklild  135 (524)
T KOG4413|consen   61 TLCVSCLERLFKAK--EGAH--LAPNLMPDLQRGLIADD-ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILD  135 (524)
T ss_pred             hhHHHHHHHHHhhc--cchh--hchhhhHHHHhcccCCc-chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHH
Confidence            33666776665432  1111  12234555555566666 789999999999988875522    344668899999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHH--HhhhCCCchhHHHHHHHHHHHhhcCCC-CCChhhhhc
Q 015537          167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL--AQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSP  243 (405)
Q Consensus       167 lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~--~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~  243 (405)
                      .+-..+.++...|+..+..++.... .-..+.+.+..+++-  ++-.+. +.-++..+...+..+..-.| ........|
T Consensus       136 cIggeddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSG  213 (524)
T KOG4413|consen  136 CIGGEDDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSG  213 (524)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhh
Confidence            9999999999999999999997655 335566666555432  222122 33345555555555555432 223334477


Q ss_pred             cHHHHHhhhcC-CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChh--
Q 015537          244 ALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDM--  318 (405)
Q Consensus       244 ~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~--  318 (405)
                      ++..|..=++. .|.-|+..++.....|+..... .+.+-+.|+++.+..++...  +|--.-.++...|.+.....-  
T Consensus       214 LldlLeaElkGteDtLVianciElvteLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimd  292 (524)
T KOG4413|consen  214 LLDLLEAELKGTEDTLVIANCIELVTELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMD  292 (524)
T ss_pred             HHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhh
Confidence            88777666654 6788888888888888754333 35567779999999888543  333333355555555422110  


Q ss_pred             -hHHHHHhc--CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHH
Q 015537          319 -QTQCVIEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLA  395 (405)
Q Consensus       319 -~~~~~~~~--g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A  395 (405)
                       ..+.+.+.  -+++....++... ++.....|.-+++-+.+.... .+.+.+. .-|..-+++.+-.+..-+ .=+..|
T Consensus       293 vseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteG-adlllkT-gppaaehllarafdqnah-akqeaa  368 (524)
T KOG4413|consen  293 VSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEG-ADLLLKT-GPPAAEHLLARAFDQNAH-AKQEAA  368 (524)
T ss_pred             cCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcch-hHHHhcc-CChHHHHHHHHHhccccc-chHHHH
Confidence             00111111  1344455666677 899999999999999665443 3444443 334444444333322101 123455


Q ss_pred             HHHHhhh
Q 015537          396 IWLCLVT  402 (405)
Q Consensus       396 ~~al~n~  402 (405)
                      ..+|.|.
T Consensus       369 ihaLaaI  375 (524)
T KOG4413|consen  369 IHALAAI  375 (524)
T ss_pred             HHHHHHh
Confidence            6666654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.68  E-value=0.0062  Score=58.36  Aligned_cols=231  Identities=16%  Similarity=0.134  Sum_probs=152.7

Q ss_pred             CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcCCchhHHHHHhC
Q 015537           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (405)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~-----~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~  158 (405)
                      ..++.+..+|+++|.|++-.+ ....+.+.+.|..+.++..|+..     + .++.+...++|--++..+++.+..+++.
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            467899999999999998754 44456677899999999999876     4 7899999999999998888888777766


Q ss_pred             -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC--------
Q 015537          159 -GAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------  212 (405)
Q Consensus       159 -g~i~~L~~lL~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~--------  212 (405)
                       +++..+...|..                 .+......++.++.|+..+.+.... -...+.++.++..+..        
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~  199 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS  199 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence             677777776632                 1345677888999999866654322 0122344555554421        


Q ss_pred             CCchhHHHHHHHHHHHhhcCCC---------C---CChhhhhccHHHHHhhhc----CC----ChHHHHHHHHHHHHhcc
Q 015537          213 QPKLSMLRNATWTLSNFCRGKP---------Q---PPFDQVSPALPALAHLIH----SN----DDEVLTDACWALSYLSD  272 (405)
Q Consensus       213 ~~~~~~~~~a~~~l~~l~~~~~---------~---~~~~~~~~~l~~L~~ll~----~~----d~~v~~~a~~~l~~l~~  272 (405)
                      .+......+++.+|.|+--...         .   .........+..|+.+|.    ..    -.+.....+.+|..++.
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~  279 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR  279 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence            2235667888888887721110         0   000111233444444442    21    14678888889998887


Q ss_pred             CChhHHHHHHh----------------cCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537          273 GTNDKIQAVIE----------------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (405)
Q Consensus       273 ~~~~~~~~~~~----------------~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  317 (405)
                      .+....+.+..                ..+-.+|+.++.+..+.++..+...+-.+|..+.
T Consensus       280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence            76444333321                1344568888888888888888888888875554

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.62  E-value=0.003  Score=59.80  Aligned_cols=278  Identities=13%  Similarity=0.030  Sum_probs=137.8

Q ss_pred             CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHH
Q 015537           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (405)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~  163 (405)
                      +.-..++.++++.+..+...  + ....+++ ..+..|-.+|++.. ...|+.|+++|..++...|+...     -+=+-
T Consensus       275 ~k~emV~lE~Ar~v~~~~~~--n-v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-----vcN~e  344 (898)
T COG5240         275 DKFEMVFLEAARAVCALSEE--N-VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-----VCNKE  344 (898)
T ss_pred             CcchhhhHHHHHHHHHHHHh--c-cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-----ecChh
Confidence            33467777777777766421  1 1112222 23666777777777 67888888888888776554221     11123


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhc
Q 015537          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP  243 (405)
Q Consensus       164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  243 (405)
                      +-.++.+.+..+-..|+.+|..-  +..+.-+.++     ..+..++ .+-+......+..++..||-..|......   
T Consensus       345 vEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv-----~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~s~---  413 (898)
T COG5240         345 VESLISDENRTISTYAITTLLKT--GTEETIDRLV-----NLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKLSY---  413 (898)
T ss_pred             HHHHhhcccccchHHHHHHHHHc--CchhhHHHHH-----HHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHHHH---
Confidence            33445555555554444444332  1111112211     1222222 23333444445555566665555444333   


Q ss_pred             cHHHHHhhh-cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHH
Q 015537          244 ALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC  322 (405)
Q Consensus       244 ~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~  322 (405)
                       +..|...| +.+.-+....+..+++.+....++....     +++.|..++.+..  ...-++++||-+....+.... 
T Consensus       414 -l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~-  484 (898)
T COG5240         414 -LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCE--YHQITVRILGILGREGPRAKT-  484 (898)
T ss_pred             -HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCC-
Confidence             33333322 3445667777777777777666554432     2355555554322  223344444444432221100 


Q ss_pred             HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       323 ~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                        -...+..+..-+--. +.-+|..|..+|+.++-.-.+   ......+...|-++|+..++     .||..|.+++.|+
T Consensus       485 --P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~Dd-----eVRdrAsf~l~~~  553 (898)
T COG5240         485 --PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDD-----EVRDRASFLLRNM  553 (898)
T ss_pred             --cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccH-----HHHHHHHHHHHhh
Confidence              001333444444444 567788888888777542111   11112233455666655433     3888888887764

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.57  E-value=0.0007  Score=49.74  Aligned_cols=68  Identities=19%  Similarity=0.259  Sum_probs=58.1

Q ss_pred             hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015537          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMH  368 (405)
Q Consensus       301 v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  368 (405)
                      ++...+++|||++..+....+.+.+.|++|.++....-. .+|.+|+-|.|++-|++.++++..+.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            456789999999999999999999999999999987643 38999999999999999999987555443

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.57  E-value=0.013  Score=54.50  Aligned_cols=224  Identities=16%  Similarity=0.079  Sum_probs=143.8

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC-CchhHHHHHHHHHHHhhcCCCCCChh
Q 015537          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFD  239 (405)
Q Consensus       161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~  239 (405)
                      .+.+..++-+++.+++..+..++..+..+.... ..+.+.+.--.++.-|..+ ++..-+.+|...+..+...+. ....
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc
Confidence            344443444445999999999999999887654 4555655544555555433 355567888888888887642 2222


Q ss_pred             hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhh
Q 015537          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (405)
Q Consensus       240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  319 (405)
                      .-.+++..++.+..+.++..+..++.+|..++-.+++   .+..+|++..++..+..+..++....+.++-.+.... ..
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p-~t  180 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP-RT  180 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc-ch
Confidence            3467888999999999999999999999999988875   4788999999999998766667788888888887543 34


Q ss_pred             HHHHHhcCchHHHHHhhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcccccchhhh
Q 015537          320 TQCVIEYQALPCLLNLLSGN------YKK--SIKKEACWTVSNITAGNREQIQVIMH-VHAFSIIVAFFFMFLHFFFGAI  390 (405)
Q Consensus       320 ~~~~~~~g~l~~L~~ll~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~~  390 (405)
                      ++++...--++.+..-+.+.      .+.  ..-+.+..++.-+...=+..+....+ ...+..|++.|....     +.
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-----~~  255 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-----PE  255 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-----HH
Confidence            44444333344444444333      022  23344556666665432221111111 245666777775542     24


Q ss_pred             HHHHH
Q 015537          391 IYKLA  395 (405)
Q Consensus       391 vr~~A  395 (405)
                      +|+..
T Consensus       256 ir~~I  260 (371)
T PF14664_consen  256 IRKAI  260 (371)
T ss_pred             HHHHH
Confidence            66643

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.56  E-value=0.01  Score=59.20  Aligned_cols=140  Identities=18%  Similarity=0.175  Sum_probs=107.6

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      ++.+++.+.+.|.++..-.-..|..+....  |  +..+-  .++.+.+=+.+++ +.+|..|++.++-+=.  ++    
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~--P--~~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~e----  123 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLK--P--ELALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KE----  123 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccC--H--HHHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HH----
Confidence            677788777888888877777777776543  2  22222  3778888888888 9999999999988733  22    


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      ++ ..+++++.+++.++++.|+..|+.|+.++-.-++   +.+.+.|.+..+..++ .+.++.+..+|+.++..+...
T Consensus       124 l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         124 LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence            22 2468899999999999999999999999986655   4555666666666666 899999999999999988765

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.54  E-value=0.00087  Score=66.63  Aligned_cols=188  Identities=17%  Similarity=0.121  Sum_probs=130.9

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH-------------HHHHhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR-------------DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~-------------~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l  226 (405)
                      +...|+.+|+.  +++-..+..++.-+..|++...             +.+. ..+++.++..+ ...+...+.+...+|
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~L  891 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEAL  891 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHH
Confidence            34556666664  4555667777777776665432             2222 23567777777 456777888889999


Q ss_pred             HHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCC---cchH
Q 015537          227 SNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVL  302 (405)
Q Consensus       227 ~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~  302 (405)
                      +++..+-|.. ....+..++|.|++.|.-+|..++..+..++.-+....+.....-++ -++|.++.+=++.+   ..+|
T Consensus       892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence            9988865543 23445788899999999999999999999998877654433222221 34567766665555   5789


Q ss_pred             HHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537          303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (405)
Q Consensus       303 ~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (405)
                      ..|+.+++.+...-+...-......++..|.+.|+++ ...||++|.-+=.
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQ 1020 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhh
Confidence            9999999999975554433344556888899999998 8899999876533

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.51  E-value=0.01  Score=53.89  Aligned_cols=190  Identities=19%  Similarity=0.230  Sum_probs=125.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHh---cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--Cc
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR---SGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TS  149 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~---~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~--~~  149 (405)
                      +...+..+.......+..++..+.+++...   ....++.   ..+++.+.+.++.+. ..-+..|+.+++-++-.  ..
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence            677788888778999999999999998653   2233332   345778888888887 56666777776665543  23


Q ss_pred             hhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhh---CCChhhHHHHHhcCChHHHHH--hhhC---------C
Q 015537          150 EHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIA---GDSPRCRDLVLSQGGLVPLLA--QLNG---------Q  213 (405)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~---~~~~~~~~~i~~~~~i~~L~~--~l~~---------~  213 (405)
                      .....+++ ...|.|...+.+.  .+.++..++.+|+-++   +..+......++  .+..+..  ....         .
T Consensus       121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence            44445554 5778888888864  4566677777777654   333322221111  2221111  1111         1


Q ss_pred             CchhHHHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537          214 PKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (405)
Q Consensus       214 ~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (405)
                      +++.+...++.++.-|...-|... .......+|.|..+|.++|.+|+..|-.+|+-+.
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            246788888888888876654422 2344778999999999999999999998888764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.47  E-value=0.01  Score=59.16  Aligned_cols=246  Identities=15%  Similarity=0.091  Sum_probs=160.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHH
Q 015537          128 EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL  206 (405)
Q Consensus       128 ~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L  206 (405)
                      +..|.+-..+.|.+...++........+-  -++...+..+. +..+.++-.|+.+++..++... +..  ...++++.|
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~~p~ild~L  535 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--LQPMILDGL  535 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--cchHHHHHH
Confidence            33477777899999876664322221111  12233333333 3455677777777777763221 111  133456666


Q ss_pred             HHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh--cCCChHHHHHHHHHHHHhccCChhHHHHHHhc
Q 015537          207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI--HSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  284 (405)
Q Consensus       207 ~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll--~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~  284 (405)
                      +.+. ...+.++......+|+..|..+|......-..+.|....++  .++||.+...+--++-.++.... +.. -...
T Consensus       536 ~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g-~m~e  612 (1005)
T KOG2274|consen  536 LQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG-PMQE  612 (1005)
T ss_pred             HHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc-chHH
Confidence            6666 66678899999999999999988777777778888776655  35678777777777766664221 111 2223


Q ss_pred             CChHHHHHhcCCCC----cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537          285 GVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (405)
Q Consensus       285 ~~l~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  360 (405)
                      ..+|.++..|..+.    .....-++..|..+..+.+.-....+-.-++|.+.++.-++.+...-..+--+|..+...+.
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            46899999998766    56677788888888876654444444456788888887776588888888899999988888


Q ss_pred             HHHHHHHHhCcHH--HHHHHHhc
Q 015537          361 EQIQVIMHVHAFS--IIVAFFFM  381 (405)
Q Consensus       361 ~~~~~l~~~~~i~--~L~~lL~~  381 (405)
                      ++...-...+++.  .++++++.
T Consensus       693 eq~~t~~~e~g~~~~yImqV~sq  715 (1005)
T KOG2274|consen  693 EQLLTWHDEPGHNLWYIMQVLSQ  715 (1005)
T ss_pred             HHHHhhccCCCccHHHHHHHHHH
Confidence            8776666555555  55555443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.46  E-value=0.019  Score=57.40  Aligned_cols=264  Identities=12%  Similarity=0.016  Sum_probs=159.4

Q ss_pred             CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHH
Q 015537           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (405)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~  163 (405)
                      +..|....++.+.+.++.+..  .....+ ..-++...+..+..+..+.++..|+.+++..++  .+.... ...+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~-~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQL-LQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhH-HHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence            456777778888888876532  111111 122344555556555547788889888888773  222211 22377888


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh-CCCchhHHHHHHHHHHHhhcCCCCCChhhhh
Q 015537          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVS  242 (405)
Q Consensus       164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  242 (405)
                      |.++....+.++.-....+|+..+..+|+..... +..+.+..+.++. .+.|+.+...+--++-.++... ........
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence            8888888889999999999999999888765443 4445666666553 5567888777777777777742 22233446


Q ss_pred             ccHHHHHhhhcCCC----hHHHHHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhHhhcCC
Q 015537          243 PALPALAHLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD  316 (405)
Q Consensus       243 ~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~  316 (405)
                      .++|.++..+..++    +....-++..|.-+..+.+ ..-+.++ .-++|.+.++. .+++......+-.||..+...+
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            78999999998765    4444555555554544432 2223233 23567776665 5666777778888888888766


Q ss_pred             hhhHHHHHhcCch--HHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          317 DMQTQCVIEYQAL--PCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       317 ~~~~~~~~~~g~l--~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      .++...--+.++.  ..++..++.=-+++.-..+|..+|.+.
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV  733 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLV  733 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHH
Confidence            5544333222222  244443331113344444444555443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.46  E-value=0.0028  Score=57.80  Aligned_cols=212  Identities=14%  Similarity=0.123  Sum_probs=146.1

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-----HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~-----~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                      .+...+.+..|+..|..-+-+.+..+..+++++.......     .+.+.. ..-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence            3455588899999999888889999999999998554322     233322 1233344444445577788888888888


Q ss_pred             hhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhcCCCCcchHHHH
Q 015537          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPA  305 (405)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~a  305 (405)
                      +++..+-.......+.+-.+...++.++-++..+|..++..+...........+..   .++.....+|.+++.-.+..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            88774322233335566667788888999999999999999776666555555554   456678889999999999999


Q ss_pred             HHHHhHhhcCChh---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHH
Q 015537          306 LRTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQVIM  367 (405)
Q Consensus       306 ~~~l~nl~~~~~~---~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~  367 (405)
                      +..||.+......   -..++-+..-+..++.+|.+. +..++-+|..++--+.++  .+..+..++
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL  295 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDIL  295 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHH
Confidence            9999999964432   234444566899999999999 999999999999988873  333355544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.017  Score=58.29  Aligned_cols=260  Identities=17%  Similarity=0.160  Sum_probs=152.7

Q ss_pred             CcHHHHHHHhcC------C-CCHHHHHHHHHHHHHHhcCC--chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015537          116 GVVPRFVEFLLR------E-DYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI  186 (405)
Q Consensus       116 g~l~~Li~lL~~------~-~~~~~~~~a~~~L~ni~~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl  186 (405)
                      |+++.+++.|++      + +++.-+.-|+++++++++--  ..--+..++.-+++.+...++++.--++..|+|.++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            567777888872      2 13667888999999988521  11112233444567777788888889999999999999


Q ss_pred             hCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCC---hhhhhccHHHHHhhhcCCChHHHHHH
Q 015537          187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP---FDQVSPALPALAHLIHSNDDEVLTDA  263 (405)
Q Consensus       187 ~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~l~~L~~ll~~~d~~v~~~a  263 (405)
                      +...-  .+...-..++....+.|.++.+..|+..++.+|..+..+.+...   ...+.+.++.|+.+.+.-+.+....+
T Consensus       490 ~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  490 SSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             HhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            94332  12222233667778888668899999999999999998864332   23345666667777766666666665


Q ss_pred             HHHHH-HhccCChhHHHHHHhcCChHHHHHhcCC---CCc---chHHHHHHHH---hHhhcCChhhHH--HHHhcCchHH
Q 015537          264 CWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMH---PSP---SVLIPALRTV---GNIVTGDDMQTQ--CVIEYQALPC  331 (405)
Q Consensus       264 ~~~l~-~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~---~v~~~a~~~l---~nl~~~~~~~~~--~~~~~g~l~~  331 (405)
                      +..+. ..+..-......+. ..+...+.+++..   .++   +=...|..+|   ..|...-+...+  .-++..+++.
T Consensus       568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v  646 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV  646 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            55433 23322111111111 1344556666653   111   2223333333   333322222221  1234457888


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 015537          332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFM  381 (405)
Q Consensus       332 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~  381 (405)
                      +-.++.+. -..+=++++-.+.+++...++---.++  |+++.+.+++..
T Consensus       647 i~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~  693 (1010)
T KOG1991|consen  647 IGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQD  693 (1010)
T ss_pred             HHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhh
Confidence            88888887 778888888888888765443222222  445555555443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.029  Score=57.81  Aligned_cols=242  Identities=13%  Similarity=0.103  Sum_probs=154.0

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHH
Q 015537          122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVL  198 (405)
Q Consensus       122 i~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~~~~i~  198 (405)
                      .....+..+..+|..+-.+|..++.. +.....+.+.  .+...|..-+++.....+...+.+|..|....+ +..+.+.
T Consensus       659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~  737 (1176)
T KOG1248|consen  659 DPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP  737 (1176)
T ss_pred             hHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            33333333389999999999999887 3332222211  234555555566667778888888888775444 2222222


Q ss_pred             hcCChHHHHHhhhCCCchhHHHHHHHHHHHhh--cCC----CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC--RGK----PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (405)
Q Consensus       199 ~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~--~~~----~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (405)
                      .  .++.++-.+ +.-+...++++..+|..++  ...    ..+....+...++.+...+-.+...+....+.++..+..
T Consensus       738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~  814 (1176)
T KOG1248|consen  738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ  814 (1176)
T ss_pred             H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence            2  333333334 6778888999999998888  221    122345556777777666554444444444566665554


Q ss_pred             CChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 015537          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (405)
Q Consensus       273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  352 (405)
                      ...+....-.-.++++.+..+|.+++++++..|+..+..++..-++..-......+++.+..+++.. ...+|..+-..|
T Consensus       815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll  893 (1176)
T KOG1248|consen  815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL  893 (1176)
T ss_pred             HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence            3322222222234567777788999999999999999999987765433333345889999988887 888999998888


Q ss_pred             HHHhc-CCHHHHHHHHH
Q 015537          353 SNITA-GNREQIQVIMH  368 (405)
Q Consensus       353 ~nl~~-~~~~~~~~l~~  368 (405)
                      --|+. ...+.++.+..
T Consensus       894 ekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  894 EKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHhCHHHHHhhCH
Confidence            88886 35555666655

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.36  E-value=0.027  Score=52.49  Aligned_cols=188  Identities=15%  Similarity=0.104  Sum_probs=102.3

Q ss_pred             CCCchhHHHHHHHHHHHhhcC-----CCCCChhhh-hccHHHHHh-------hhcCCChHHHHHHHHHHHHhccCChhHH
Q 015537          212 GQPKLSMLRNATWTLSNFCRG-----KPQPPFDQV-SPALPALAH-------LIHSNDDEVLTDACWALSYLSDGTNDKI  278 (405)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~-~~~l~~L~~-------ll~~~d~~v~~~a~~~l~~l~~~~~~~~  278 (405)
                      ...++.++..+..++..+-.+     .|.....-. .+.+-.+.-       ...+.-+......|-+++++.....+..
T Consensus       305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l  384 (728)
T KOG4535|consen  305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNL  384 (728)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC
Confidence            455788888888888766543     232222111 121211110       1112234566777778877764322110


Q ss_pred             HHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-
Q 015537          279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-  357 (405)
Q Consensus       279 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-  357 (405)
                      .-=...-.+-.+...=++.+.-++..|+++++-.+-+.........-.+....+...+.+. ....|..++|+++||+. 
T Consensus       385 pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdA  463 (728)
T KOG4535|consen  385 PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDA  463 (728)
T ss_pred             CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHH
Confidence            0000000011111122334445788899999888876655544444445666777777776 77889999999999986 


Q ss_pred             ---C--CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          358 ---G--NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       358 ---~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                         +  +++..+.-+..-.+..++..-... +. +.++|+.+|..+|+|+
T Consensus       464 L~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~-~A-d~dkV~~navraLgnl  511 (728)
T KOG4535|consen  464 LIVNMPTPDSFQERFSGLLLLKMLRSAIEA-SA-DKDKVKSNAVRALGNL  511 (728)
T ss_pred             HHcCCCCchHHHHHHHHHHHHHHHHHHHHh-hh-hhhhhhhHHHHHHhhH
Confidence               3  333233333344455555543221 11 2468999999999986

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.32  E-value=0.062  Score=49.17  Aligned_cols=240  Identities=12%  Similarity=0.117  Sum_probs=158.1

Q ss_pred             HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH-----HHHhC--CChHHHHHhhCCCCHHHHHHHHHHH
Q 015537          111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK-----VVIDH--GAVPIFVKLLYSPSDDVREQAVWAL  183 (405)
Q Consensus       111 ~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~-----~~~~~--g~i~~L~~lL~~~~~~i~~~a~~~L  183 (405)
                      ++...+.+..|+..|..-+ -+.+..++.+.+++.......+.     .+...  .++..|+..-.  ++++.-.+...|
T Consensus        71 Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml  147 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML  147 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence            4567788999999998887 78999999999999886554432     33322  34444444444  566666777777


Q ss_pred             HHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh----hhccHHHHHhhhcCCChHH
Q 015537          184 GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ----VSPALPALAHLIHSNDDEV  259 (405)
Q Consensus       184 ~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~----~~~~l~~L~~ll~~~d~~v  259 (405)
                      ...+.+.. +...++....+..+.+.+ ..++-++...|..++..+-..++......    ....+.....++.+++--+
T Consensus       148 Rec~k~e~-l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt  225 (335)
T PF08569_consen  148 RECIKHES-LAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT  225 (335)
T ss_dssp             HHHTTSHH-HHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred             HHHHhhHH-HHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence            77776654 556777777888888887 88899999999999998766543222222    2456677888999999999


Q ss_pred             HHHHHHHHHHhccCChh---HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh---hhHHHHHh--cCchHH
Q 015537          260 LTDACWALSYLSDGTND---KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD---MQTQCVIE--YQALPC  331 (405)
Q Consensus       260 ~~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~~~--~g~l~~  331 (405)
                      +..++..|+.+......   ...++-+..-+..++.+|++.+..++..|..++=-+++++.   ...+.+..  ..++..
T Consensus       226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~f  305 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRF  305 (335)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHH
T ss_pred             ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH
Confidence            99999999998754332   23444555778899999999999999999999988877543   22222222  235555


Q ss_pred             HHHhhcCC-CchhHHHHHHHHHHHH
Q 015537          332 LLNLLSGN-YKKSIKKEACWTVSNI  355 (405)
Q Consensus       332 L~~ll~~~-~~~~v~~~a~~~L~nl  355 (405)
                      |.++..+. .+.....+=.+.+..|
T Consensus       306 l~~f~~~~~~D~qf~~EK~~li~~i  330 (335)
T PF08569_consen  306 LKDFHTDRTDDEQFEDEKAYLIKQI  330 (335)
T ss_dssp             HHTTTTT--S-CHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCccccHHHHHHHHHHHH
Confidence            55555544 3555555555555444

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.32  E-value=0.011  Score=47.12  Aligned_cols=124  Identities=15%  Similarity=0.173  Sum_probs=99.1

Q ss_pred             hHHHHHhcCChHHHHHhhhCCCc-----hhHHHHHHHHHHHhhcCCCCCChhhh-hccHHHHHhhhcCC--ChHHHHHHH
Q 015537          193 CRDLVLSQGGLVPLLAQLNGQPK-----LSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIHSN--DDEVLTDAC  264 (405)
Q Consensus       193 ~~~~i~~~~~i~~L~~~l~~~~~-----~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~--d~~v~~~a~  264 (405)
                      +...++..+|+..|++++..+..     .++...++.++..|-++. ...+... ..++..++..++..  |..+...++
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            45678889999999999966553     578888999999998873 3334333 55666777776543  689999999


Q ss_pred             HHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (405)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  317 (405)
                      ..|-++..+++...+.+-+.=-++.|+.+|+..++.++..++..+-.+..+.+
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            99999999888877777777778999999999999999999998888876554

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.31  E-value=0.0091  Score=60.05  Aligned_cols=267  Identities=13%  Similarity=0.078  Sum_probs=175.2

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (405)
                      ...+.+-++.+... +.++..++.-+++++..-..   .....+.++.+..+..++...+++.|...+.++...-..- +
T Consensus       237 elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~-~  311 (759)
T KOG0211|consen  237 ELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD-D  311 (759)
T ss_pred             HHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc-h
Confidence            33444455555555 88888888888888876333   5667789999999999999999999999999987432211 0


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC-C
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-T  274 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~  274 (405)
                      . ......+.++... .+++..+...+....+.++..-..  ........+....++.....+.+..+..-...++.. +
T Consensus       312 d-~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~  387 (759)
T KOG0211|consen  312 D-VVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN  387 (759)
T ss_pred             h-hhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence            1 1223566777777 777888888877777777765422  222234566677777777777777766655555433 2


Q ss_pred             hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                      .+....+....++|.+..+..+.+..++...+..+..+..-.+  .. -.-...+|.+...+++. .+.|+....|.++.
T Consensus       388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~-~ti~~llp~~~~~l~de-~~~V~lnli~~ls~  463 (759)
T KOG0211|consen  388 ASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KE-RTISELLPLLIGNLKDE-DPIVRLNLIDKLSL  463 (759)
T ss_pred             cccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cC-cCccccChhhhhhcchh-hHHHHHhhHHHHHH
Confidence            1222335556678999999988898888877766666543221  00 01124778888888888 89999999998887


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537          355 ITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                      +-..+...-........+|.+..+-...     ...+|.+..|.+-
T Consensus       464 ~~~v~~v~g~~~~s~slLp~i~el~~d~-----~wRvr~ail~~ip  504 (759)
T KOG0211|consen  464 LEEVNDVIGISTVSNSLLPAIVELAEDL-----LWRVRLAILEYIP  504 (759)
T ss_pred             HHhccCcccchhhhhhhhhhhhhhccch-----hHHHHHHHHHHHH
Confidence            7654333334444566677776655433     2457766666553

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.30  E-value=0.17  Score=48.27  Aligned_cols=177  Identities=15%  Similarity=0.129  Sum_probs=103.6

Q ss_pred             CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh-cCCC----hHHHHHHHHHHHHhccCChhHHHHHHhcCC
Q 015537          212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (405)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (405)
                      ...++..+..++.+++.+....+...  .....+..+..-+ ...+    +....-..|....+.-.......     .+
T Consensus       200 ~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~  272 (415)
T PF12460_consen  200 SSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----EL  272 (415)
T ss_pred             cCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HH
Confidence            34445556666666666655432222  2233444433333 1222    23334444555544322222222     23


Q ss_pred             hHHHHHhcCCCCcchHHHHHHHHhHhhcCChh--------hHHHHHhc----CchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM--------QTQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       287 l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~--------~~~~~~~~----g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                      +..|+.+|.+  +.+...+.+.++-+....+.        ....+...    .++|.|++-.... +...|..-..+|++
T Consensus       273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~  349 (415)
T PF12460_consen  273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSH  349 (415)
T ss_pred             HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHH
Confidence            5778888876  66788888999888866232        12222222    3567777777766 55688888899999


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          355 ITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      +..+-|..+-.---..++|.|++.|...+     +.++..+.-.|..+.
T Consensus       350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~-----~~v~~s~L~tL~~~l  393 (415)
T PF12460_consen  350 LLKNVPKSVLLPELPTLLPLLLQSLSLPD-----ADVLLSSLETLKMIL  393 (415)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHH
Confidence            99987765543334679999999996543     358888877776553

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.27  E-value=0.013  Score=48.78  Aligned_cols=93  Identities=25%  Similarity=0.329  Sum_probs=75.7

Q ss_pred             chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc
Q 015537          215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (405)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL  294 (405)
                      ++.++.+++-+++-||...|    ..+.+.+|.+...|.++++.|+..|+.+|..|...+....+    ..++..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence            46788999999999988754    34467889999999999999999999999999865433222    22347888888


Q ss_pred             CCCCcchHHHHHHHHhHhhcC
Q 015537          295 MHPSPSVLIPALRTVGNIVTG  315 (405)
Q Consensus       295 ~~~~~~v~~~a~~~l~nl~~~  315 (405)
                      .+++++++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999865

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.27  E-value=0.005  Score=60.67  Aligned_cols=215  Identities=13%  Similarity=0.065  Sum_probs=149.9

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +++..++.+..-..+...+....+|.--.+......      ..+++.+...+.+.....-..+++.+++|+++.+...+
T Consensus       504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r  577 (748)
T KOG4151|consen  504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR  577 (748)
T ss_pred             cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence            456777777777777777777777762112221111      23466666666554423346889999999999888888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      ..+...-.++.+-.++-.+++.++..++..+.||....--+...+.+...=.++........++.....++.++..+...
T Consensus       578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv  657 (748)
T KOG4151|consen  578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV  657 (748)
T ss_pred             HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence            88888878888788888899999999999999999777666566666444445555543556666777777776655544


Q ss_pred             C-CCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHh
Q 015537          233 K-PQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF  293 (405)
Q Consensus       233 ~-~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  293 (405)
                      . .... ..........+..++.+.+++++...+..+.++.....+....+++...++.+..+
T Consensus       658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence            3 1122 33445667788889999999999999999999777777777777766666655544

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.27  E-value=0.016  Score=58.35  Aligned_cols=299  Identities=11%  Similarity=0.061  Sum_probs=195.3

Q ss_pred             hhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCC
Q 015537           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (405)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~  160 (405)
                      ..+..++.++..++.-+.++.+.-    ......+++++.+.++...+. ..+++.|...+.++.......-  =.....
T Consensus       245 lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d~~~~~  317 (759)
T KOG0211|consen  245 LCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--DVVKSL  317 (759)
T ss_pred             hccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--hhhhhh
Confidence            344456778887877777775432    236677889999999999888 7999999999988876422111  122256


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC--CCh
Q 015537          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--PPF  238 (405)
Q Consensus       161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~  238 (405)
                      .+.++....+.+..++.........++..-..   .......+++...++ ++...+.+..++.-...++...+.  ...
T Consensus       318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~~~~  393 (759)
T KOG0211|consen  318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASCYPN  393 (759)
T ss_pred             hHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcccccc
Confidence            78888888888888887777666666532111   111223456666776 666667777776666666665432  222


Q ss_pred             hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh
Q 015537          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (405)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~  318 (405)
                      .....++|.+..+..+.+..++...+..+..+..-.+.  ... -....|.++..+++..+.++....+.+..+-..++.
T Consensus       394 i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v  470 (759)
T KOG0211|consen  394 IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDV  470 (759)
T ss_pred             cchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCc
Confidence            33356789999999888899988888777766533220  000 124567788888888999999988888777665554


Q ss_pred             hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL  398 (405)
Q Consensus       319 ~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a  398 (405)
                      ..........+|.+..+-... ..+++.+..|.+--++....   ..+.+...-+.+..-+.+.     -+.||+.|+..
T Consensus       471 ~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-----v~~Ir~~aa~~  541 (759)
T KOG0211|consen  471 IGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-----VYSIREAAARN  541 (759)
T ss_pred             ccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-----HHHHHHHHHHH
Confidence            444455667888888888888 89999999998888875221   2222222222222223222     35688887766


Q ss_pred             Hhhh
Q 015537          399 CLVT  402 (405)
Q Consensus       399 l~n~  402 (405)
                      +.-+
T Consensus       542 l~~l  545 (759)
T KOG0211|consen  542 LPAL  545 (759)
T ss_pred             hHHH
Confidence            6543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.27  E-value=0.048  Score=47.00  Aligned_cols=226  Identities=19%  Similarity=0.261  Sum_probs=142.3

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      +..+.+....+..-..++.+.+|.++-            ....+|.++..|...+ .|.++.+|+.+|+++...      
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~------------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~~------   99 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQ------------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP------   99 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhc------------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcch------
Confidence            445555555444445556666666552            2345899988886533 378999999999998732      


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH----HHH--------HhcCChHHHHHhhhCCCchhH-HH
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DLV--------LSQGGLVPLLAQLNGQPKLSM-LR  220 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~----~~i--------~~~~~i~~L~~~l~~~~~~~~-~~  220 (405)
                           +.++.+-++.+++-..|++.+..++..+-..+....    ...        ...+.+..+-..|.+.+.+.. ++
T Consensus       100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry  174 (289)
T KOG0567|consen  100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY  174 (289)
T ss_pred             -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence                 457788888877888888888888777642111000    000        011123333333323333333 33


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC--CCC
Q 015537          221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPS  298 (405)
Q Consensus       221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~  298 (405)
                      .+.+.|.|+-..          ..+..+..-+..+..-++..+..+++.|-.           .-.++.|.+.|.  ..+
T Consensus       175 ~amF~LRn~g~E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~  233 (289)
T KOG0567|consen  175 RAMFYLRNIGTE----------EAINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEH  233 (289)
T ss_pred             hhhhHhhccCcH----------HHHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcc
Confidence            444444444322          455667777777778889999999987742           223577777774  356


Q ss_pred             cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       299 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      +-+|..|+.+||.|+.  +         ..++.|...+.++ .+-|++.+..+|.-+-
T Consensus       234 pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D~-~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  234 PMVRHEAAEALGAIAD--E---------DCVEVLKEYLGDE-ERVVRESCEVALDMLE  279 (289)
T ss_pred             hHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Confidence            7899999999999973  2         2466788888888 8888888877776553

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.22  E-value=0.013  Score=48.70  Aligned_cols=92  Identities=17%  Similarity=0.187  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC-hHHHHHh
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG-LVPLLAQ  209 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~-i~~L~~~  209 (405)
                      |.+|..++-+++-++..-+...+     ..++.+...|.++++.++.+|+.+|.+|...+.     +.-.|. +..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence            78999999999999886444322     468899999999999999999999999985432     222333 3677888


Q ss_pred             hhCCCchhHHHHHHHHHHHhhcCC
Q 015537          210 LNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       210 l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      + .+++++++..|..++..+....
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHhc
Confidence            8 8899999999999999998873

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.22  E-value=0.0012  Score=48.51  Aligned_cols=87  Identities=18%  Similarity=0.115  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC
Q 015537          176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN  255 (405)
Q Consensus       176 ~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~  255 (405)
                      +..++.+|+.++..-+..-.... ..++++++..+ .+++..++..++.+|.|++.............+++.|.+++.+.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            44566777776643332222222 23788999999 99999999999999999998765444556688889999999999


Q ss_pred             ChHHHHHHH
Q 015537          256 DDEVLTDAC  264 (405)
Q Consensus       256 d~~v~~~a~  264 (405)
                      |+.|+..|.
T Consensus        81 d~~Vr~~a~   89 (97)
T PF12755_consen   81 DENVRSAAE   89 (97)
T ss_pred             chhHHHHHH
Confidence            999887773

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.015  Score=57.01  Aligned_cols=233  Identities=15%  Similarity=0.190  Sum_probs=144.0

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~  195 (405)
                      .+..+..+|.+++ +.+.++|+..|.+++.. |...+.     +...++.++.. ++.++.-..+.-|..+....    .
T Consensus       244 ~i~~i~~lL~sts-saV~fEaa~tlv~lS~~-p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~----~  312 (948)
T KOG1058|consen  244 YIRCIYNLLSSTS-SAVIFEAAGTLVTLSND-PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALH----E  312 (948)
T ss_pred             HHHHHHHHHhcCC-chhhhhhcceEEEccCC-HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhh----H
Confidence            4667777888776 78888888888887765 332222     23344554433 34455544555555554211    1


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHh-hhcC------CChHHHHHHHHHHH
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH-LIHS------NDDEVLTDACWALS  268 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~-ll~~------~d~~v~~~a~~~l~  268 (405)
                      .++ .|.+-.++..| ..+|.++++.++....-|.....      +..++..|-. +.++      ++.+.+...+.++.
T Consensus       313 ~il-~~l~mDvLrvL-ss~dldvr~Ktldi~ldLvssrN------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih  384 (948)
T KOG1058|consen  313 KIL-QGLIMDVLRVL-SSPDLDVRSKTLDIALDLVSSRN------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH  384 (948)
T ss_pred             HHH-HHHHHHHHHHc-CcccccHHHHHHHHHHhhhhhcc------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence            222 23455667777 88999999999998888887632      1222333322 1111      23567888889999


Q ss_pred             HhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHH
Q 015537          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA  348 (405)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a  348 (405)
                      +.+-..++...     .+++.+++++++.++......+..+.......+..+..+     +..|+.-+..-...++.+.|
T Consensus       385 ~cav~Fp~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rga  454 (948)
T KOG1058|consen  385 ACAVKFPEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGA  454 (948)
T ss_pred             HHhhcChHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhH
Confidence            98877777655     446899999999888777777777766665555444433     33344433332245789999


Q ss_pred             HHHHHHHhcCCHHHHH--HHH--HhCcHHHHHHH
Q 015537          349 CWTVSNITAGNREQIQ--VIM--HVHAFSIIVAF  378 (405)
Q Consensus       349 ~~~L~nl~~~~~~~~~--~l~--~~~~i~~L~~l  378 (405)
                      .|++|-.|.+..+...  ..+  ..|=+|.+..=
T Consensus       455 lwi~GeYce~~~~i~~~~k~i~~slGEvp~~~se  488 (948)
T KOG1058|consen  455 LWILGEYCEGLSEIQSVIKIIRQSLGEVPIVCSE  488 (948)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhccccceehHH
Confidence            9999999987653211  222  46777766544

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.019  Score=56.26  Aligned_cols=298  Identities=11%  Similarity=0.083  Sum_probs=149.7

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc------
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS------  149 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~------  149 (405)
                      ..+-+.|+++++-++=..++.+.++-  + .+-.     ...+|.+...|.+.+ +-+|..|..++..|-....      
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckLk--E-~ELl-----epl~p~IracleHrh-sYVRrNAilaifsIyk~~~~L~pDa  172 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKLK--E-PELL-----EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFEHLIPDA  172 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhcC--c-HHHh-----hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhhhhcCCh
Confidence            34455667777777777777777762  1 1111     234777777777777 6777777777776655411      


Q ss_pred             -hhHH--------------HHHh------CCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHH
Q 015537          150 -EHTK--------------VVID------HGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP  205 (405)
Q Consensus       150 -~~~~--------------~~~~------~g~i~~L~~lL~~---~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~  205 (405)
                       +...              +++-      ..++.+|.....+   -++.++-..+..+...|...|.-+     ...+..
T Consensus       173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~  247 (948)
T KOG1058|consen  173 PELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRC  247 (948)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHH
Confidence             1000              0000      0112222221111   123333333444444443333221     123455


Q ss_pred             HHHhhhC----------------CCchhHHHHHHHHHHHhhcCCCCCCh----------------hhhhccHHHHHhhhc
Q 015537          206 LLAQLNG----------------QPKLSMLRNATWTLSNFCRGKPQPPF----------------DQVSPALPALAHLIH  253 (405)
Q Consensus       206 L~~~l~~----------------~~~~~~~~~a~~~l~~l~~~~~~~~~----------------~~~~~~l~~L~~ll~  253 (405)
                      +..+|..                +.++...+.++.++..|....+....                ..+.+++--++.+|.
T Consensus       248 i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLs  327 (948)
T KOG1058|consen  248 IYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLS  327 (948)
T ss_pred             HHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcC
Confidence            6666621                22344455555555544443321111                112334444566777


Q ss_pred             CCChHHHHHHHHHHHHhccCC-hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHH
Q 015537          254 SNDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL  332 (405)
Q Consensus       254 ~~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L  332 (405)
                      ++|-+++..++.....|+... -+.+-.+++..+...--. =...+...|..-+.+|...+..-++...     .+++.|
T Consensus       328 s~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~aa-----tvV~~l  401 (948)
T KOG1058|consen  328 SPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEVAA-----TVVSLL  401 (948)
T ss_pred             cccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHHHH-----HHHHHH
Confidence            788888888877766665432 222221222111111000 0112335677788888887766555444     568899


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       333 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      ++++.+. ++.........+.-.....|..     ...++..|++-+..-..    +++-+-|.|.+|-.|
T Consensus       402 l~fisD~-N~~aas~vl~FvrE~iek~p~L-----r~~ii~~l~~~~~~irS----~ki~rgalwi~GeYc  462 (948)
T KOG1058|consen  402 LDFISDS-NEAAASDVLMFVREAIEKFPNL-----RASIIEKLLETFPQIRS----SKICRGALWILGEYC  462 (948)
T ss_pred             HHHhccC-CHHHHHHHHHHHHHHHHhCchH-----HHHHHHHHHHhhhhhcc----cccchhHHHHHHHHH
Confidence            9999988 6655444444444444344443     23445555555543322    257788999988766

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.13  E-value=0.012  Score=56.03  Aligned_cols=203  Identities=20%  Similarity=0.257  Sum_probs=121.6

Q ss_pred             HHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHh-cCCC---CHHHHHHHHHHHHHHhc-CC
Q 015537           75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL-LRED---YPQLQFEAAWALTNIAS-GT  148 (405)
Q Consensus        75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL-~~~~---~~~~~~~a~~~L~ni~~-~~  148 (405)
                      +..++....+ .++..+..+++.+.-++..-  +..+ .. ..++..+..-+ ....   .+..-...+|+...+.. ++
T Consensus       191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~--~~~~-~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  191 LQSLLNLALSSEDEFSRLAALQLLASLVNKW--PDDD-DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHcCC--CChh-hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            4455554443 45777777777777766331  1111 11 12233333333 1112   12333344455544433 32


Q ss_pred             chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-------------HHHHHhcCChHHHHHhhhCCCc
Q 015537          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-------------RDLVLSQGGLVPLLAQLNGQPK  215 (405)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~-------------~~~i~~~~~i~~L~~~l~~~~~  215 (405)
                      +...      ..+..|+.+|.+  +++...++.+++-+..+.+.+             ++.+... .++.|++.. +..+
T Consensus       267 ~~~~------~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~-~~~~  336 (415)
T PF12460_consen  267 PLAT------ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGF-KEAD  336 (415)
T ss_pred             chHH------HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHH-hhcC
Confidence            2211      246678888885  788899999999999884433             2222221 455666666 4445


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCCh-hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHH
Q 015537          216 LSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (405)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  292 (405)
                      .+.+.+.+.+|+++..+-|.... .....++|.+++-|..+|++++..++.++..+....++....-++ .+++.|++
T Consensus       337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~  413 (415)
T PF12460_consen  337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK  413 (415)
T ss_pred             hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence            55888899999999997654332 334789999999999999999999999999998877655443222 34444443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.12  E-value=0.013  Score=46.79  Aligned_cols=125  Identities=13%  Similarity=0.110  Sum_probs=99.3

Q ss_pred             hHHHHhcCcHHHHHHHhcCCCC-----HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHH
Q 015537          109 IEEVIRSGVVPRFVEFLLREDY-----PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVW  181 (405)
Q Consensus       109 ~~~~~~~g~l~~Li~lL~~~~~-----~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~  181 (405)
                      ..+++..|++..|++++.++..     ..+...++.++..+..+. ......++...|..++.++..+  ++.+.+.|+.
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            4678899999999999988762     367777888888888763 3233455556778888888763  6899999999


Q ss_pred             HHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC
Q 015537          182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (405)
Q Consensus       182 ~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  235 (405)
                      .|-++...++.....+.+.=.++.|+..| ..++.+++.++...+..|....+.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hL-q~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHL-QVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999998887777777666689999999 678999999999988888776543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.041  Score=54.28  Aligned_cols=258  Identities=14%  Similarity=0.113  Sum_probs=127.2

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH--
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD--  195 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~--  195 (405)
                      .+.+=.+|.+.. +.+..+|+.++.++...++....     .++..|-.++.++.+.+|-.|+.+|..+|...|..-.  
T Consensus       247 ~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c  320 (865)
T KOG1078|consen  247 FPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC  320 (865)
T ss_pred             HHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence            344445555555 78999999999998765433222     2677888888999999999999999999976553211  


Q ss_pred             ------HHHhcC---ChHHHHHhhhCCCc---hhHHHHHHHHHHHhhcCCCCCChhh-----------hhccHHHHHhhh
Q 015537          196 ------LVLSQG---GLVPLLAQLNGQPK---LSMLRNATWTLSNFCRGKPQPPFDQ-----------VSPALPALAHLI  252 (405)
Q Consensus       196 ------~i~~~~---~i~~L~~~l~~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~-----------~~~~l~~L~~ll  252 (405)
                            .+-..+   ....+..+|....+   ..+......++++++.+........           ....++.|..+|
T Consensus       321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L  400 (865)
T KOG1078|consen  321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML  400 (865)
T ss_pred             chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence                  110000   01222223311111   1223333344444443321111100           012223333333


Q ss_pred             cC-CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHH
Q 015537          253 HS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC  331 (405)
Q Consensus       253 ~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~  331 (405)
                      .. +.-+...+...++..+....++...     -++..|..++.+..  ...-+.++++-+....+..   ......+..
T Consensus       401 r~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Pskyir~  470 (865)
T KOG1078|consen  401 REEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPSKYIRF  470 (865)
T ss_pred             HhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcchhhHH
Confidence            22 1233334444444433332222111     22333333332211  1222333333332211100   001123444


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       332 L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      +...+.-. +..+|.+|.-+|.++.++++...     ..+.-.|.+++...++     .||..|.+++.+.
T Consensus       471 iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~Dd-----evRdrAtf~l~~l  530 (865)
T KOG1078|consen  471 IYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDD-----EVRDRATFYLKNL  530 (865)
T ss_pred             Hhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchH-----HHHHHHHHHHHHh
Confidence            45554445 67889999999999986544432     2344566667765544     4999999998764

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.038  Score=57.01  Aligned_cols=221  Identities=14%  Similarity=0.092  Sum_probs=142.0

Q ss_pred             cCCChHHHHHHHHHHHHhhccCCCCchHHHHhcC---cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc-hhHHHHHhC
Q 015537           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-EHTKVVIDH  158 (405)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g---~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~-~~~~~~~~~  158 (405)
                      ++.+..+|..+...|..+++.   +....+....   +...|.+-+++.. ...+...+.+|..|....+ +....+. .
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~~e~~~~i~-k  738 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLSAEHCDLIP-K  738 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccHHHHHHHH-H
Confidence            345789999999999999764   4444444332   3455555666666 6788888888888877655 3433333 2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC------ChHHHHHhhhCC--CchhHHHHH-HHHHHHh
Q 015537          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG------GLVPLLAQLNGQ--PKLSMLRNA-TWTLSNF  229 (405)
Q Consensus       159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~------~i~~L~~~l~~~--~~~~~~~~a-~~~l~~l  229 (405)
                      . |+-++-.++..+...++.+..+|..|+.     .....+.|      .+..++..+...  .+..-.... +-++..+
T Consensus       739 ~-I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  739 L-IPEVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHI  812 (1176)
T ss_pred             H-HHHHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence            3 4444444477788888888888888872     01111111      455555555322  222222222 4555555


Q ss_pred             hcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHH
Q 015537          230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (405)
Q Consensus       230 ~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  308 (405)
                      .... .........+++..+..+|.++.++++..|+..+.-++...++..-.-....+++.+..+++...-.++..+-..
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLL  892 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            5544 455566668888888899999999999999999999988776643333333477888887777677777776666


Q ss_pred             HhHhhc
Q 015537          309 VGNIVT  314 (405)
Q Consensus       309 l~nl~~  314 (405)
                      +-.++.
T Consensus       893 lekLir  898 (1176)
T KOG1248|consen  893 LEKLIR  898 (1176)
T ss_pred             HHHHHH
Confidence            666653

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.0086  Score=59.06  Aligned_cols=231  Identities=13%  Similarity=0.065  Sum_probs=159.8

Q ss_pred             HhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHH
Q 015537          144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG-NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (405)
Q Consensus       144 i~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~-nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a  222 (405)
                      ++......+...+..|+...|+++.....+..+.....+|. .+.-.+..      ....++++.+.+.++....-....
T Consensus       489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~  562 (748)
T KOG4151|consen  489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEA  562 (748)
T ss_pred             HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHH
Confidence            33444556677888999999999999888888888888887 33221111      123566666666444444445677


Q ss_pred             HHHHHHhhcCCCCCChhhh-hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCCCCcc
Q 015537          223 TWTLSNFCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPS  300 (405)
Q Consensus       223 ~~~l~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~  300 (405)
                      +.++.||+..+........ ...++.+-.++..+++..+..++..+.||.-++.-....+.+. ..++.....+...+..
T Consensus       563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~  642 (748)
T KOG4151|consen  563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK  642 (748)
T ss_pred             HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence            7888888877633332232 4555666777778889999999999999997766555556663 5566666666666666


Q ss_pred             hHHHHHHHHhHhhcCChhhHH-HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537          301 VLIPALRTVGNIVTGDDMQTQ-CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF  379 (405)
Q Consensus       301 v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL  379 (405)
                      ...+++.++..|.+....... ..-.....+.+..++.++ +..++.-....+.|+.....+....+++...++.+...-
T Consensus       643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~  721 (748)
T KOG4151|consen  643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ  721 (748)
T ss_pred             HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence            677777777656654443333 223346788899999999 999999999999998777778777888888888877654


Q ss_pred             hc
Q 015537          380 FM  381 (405)
Q Consensus       380 ~~  381 (405)
                      .-
T Consensus       722 ~~  723 (748)
T KOG4151|consen  722 KL  723 (748)
T ss_pred             Hh
Confidence            43

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.02  E-value=0.0011  Score=50.10  Aligned_cols=73  Identities=23%  Similarity=0.318  Sum_probs=61.6

Q ss_pred             hccHHHHHhhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          242 SPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       242 ~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      ..++..|+.+|. +.|+.+..-||.-|+.++...+.....+-+.|+-..++.++.+++++|+..|+.++..+..
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            457788899984 4578899999999999999888888877777999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.00  E-value=0.097  Score=51.17  Aligned_cols=175  Identities=19%  Similarity=0.157  Sum_probs=120.7

Q ss_pred             hhcCCChHHHHHHHHHHH--HhhccCCCCchHHHHhcCcHHHHHHHhcC----CCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           81 GVWSNDSGVQYECTTQFR--KLLSIERSPPIEEVIRSGVVPRFVEFLLR----EDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~--~l~s~~~~~~~~~~~~~g~l~~Li~lL~~----~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      .+...+++.-..|...++  .++-++      .-+-+.+-|...+...+    ++ +.++..|.-+|..+..-+.+... 
T Consensus       861 ~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-  932 (1128)
T COG5098         861 RIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-  932 (1128)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-
Confidence            444445555556665553  233332      11122334444555544    34 89999999999987665444332 


Q ss_pred             HHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          155 VIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                          ..+|.|+..+. +++|.++.+|+-.+|.++..-....+.     .-..|..-| .+.+..+++.+..++.+|.-..
T Consensus       933 ----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag 1002 (1128)
T COG5098         933 ----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred             ----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc
Confidence                46899999998 799999999999999887433222222     344667777 7889999999999999987653


Q ss_pred             CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH
Q 015537          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK  277 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~  277 (405)
                          ...+.|-++.+..+|.++|.++..-|-..+..++..+...
T Consensus      1003 ----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~ 1042 (1128)
T COG5098        1003 ----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTM 1042 (1128)
T ss_pred             ----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccch
Confidence                2345788999999999999998888888888887665543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.98  E-value=0.064  Score=49.94  Aligned_cols=147  Identities=14%  Similarity=0.202  Sum_probs=102.5

Q ss_pred             ChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHH-HHHhccCChhHHHH
Q 015537          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWA-LSYLSDGTNDKIQA  280 (405)
Q Consensus       202 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~-l~~l~~~~~~~~~~  280 (405)
                      ++..++..|.++.+...+..++..|..+|++.+..-+....-++..+++.-.+.++++...|..+ +.-++.+.+...  
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--  407 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--  407 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--
Confidence            55677778866689999999999999999998766666666666666666666666655555444 334455555432  


Q ss_pred             HHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       281 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                            +..+..++...|......++.++..++..-....-..+-..+.|.+++...+. +..||+.|.++|..+..
T Consensus       408 ------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  408 ------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             ------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                  22334444446666677778788888754432222223347899999999999 99999999999999864

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.96  E-value=0.0021  Score=47.24  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCC
Q 015537          219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS  298 (405)
Q Consensus       219 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~  298 (405)
                      ++-++++|+..+.+-+.........++|.++..+.++|+.|+..||.+|.+++....+..-. .=..+++.|..++.+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence            44566777777776655556666889999999999999999999999999998665432211 12367788899999999


Q ss_pred             cchHHHHHHHHhHh
Q 015537          299 PSVLIPALRTVGNI  312 (405)
Q Consensus       299 ~~v~~~a~~~l~nl  312 (405)
                      +.|+..| ..|-++
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            9988765 444443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.23  Score=50.54  Aligned_cols=225  Identities=15%  Similarity=0.131  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHHHHhhccC-CCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHH
Q 015537           87 SGVQYECTTQFRKLLSIE-RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV  165 (405)
Q Consensus        87 ~~~~~~a~~~l~~l~s~~-~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~  165 (405)
                      +....-|++.+..+.+.= +..+.....+.=+++.+...++++. -.+|..|||+++.+++.+-....  .-..++....
T Consensus       432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~--~l~~ale~t~  508 (1010)
T KOG1991|consen  432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPN--NLSEALELTH  508 (1010)
T ss_pred             hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChH--HHHHHHHHHH
Confidence            333444555554443211 1333334444445666777777776 78999999999999964222222  2224566667


Q ss_pred             HhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhhCCCchhHHHHHHHHH-HHhhcCCCCCChhhh
Q 015537          166 KLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTL-SNFCRGKPQPPFDQV  241 (405)
Q Consensus       166 ~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~L~~~l~~~~~~~~~~~a~~~l-~~l~~~~~~~~~~~~  241 (405)
                      ..|. +.+-.|+-.|+-+|..+..+.+.....+..  .+.++.|+++. +..+.+....+...+ ..++..-.+......
T Consensus       509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~  587 (1010)
T KOG1991|consen  509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELC  587 (1010)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            7776 667789999999999998777644332322  12345555555 333333444443333 333333233333344


Q ss_pred             hccHHHHHhhhcC---CC---hHHHHHHHHHHHHhc------cCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537          242 SPALPALAHLIHS---ND---DEVLTDACWALSYLS------DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (405)
Q Consensus       242 ~~~l~~L~~ll~~---~d---~~v~~~a~~~l~~l~------~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l  309 (405)
                      ..+.....++++.   .+   .+-...|..+|..+.      +..++..+ -++..+++.+-..|.+.-.++-..++.++
T Consensus       588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~  666 (1010)
T KOG1991|consen  588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIV  666 (1010)
T ss_pred             HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5566666677763   11   222233333333222      11222211 22233445555555665566666677666


Q ss_pred             hHhhcCC
Q 015537          310 GNIVTGD  316 (405)
Q Consensus       310 ~nl~~~~  316 (405)
                      .++....
T Consensus       667 ~~~t~~~  673 (1010)
T KOG1991|consen  667 SSLTFLS  673 (1010)
T ss_pred             hhhhhhh
Confidence            6666544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.95  E-value=0.15  Score=51.63  Aligned_cols=200  Identities=18%  Similarity=0.200  Sum_probs=124.7

Q ss_pred             HHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccH--HHHHhhhcCCCh-H
Q 015537          182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL--PALAHLIHSNDD-E  258 (405)
Q Consensus       182 ~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l--~~L~~ll~~~d~-~  258 (405)
                      +|+++..+.+..-..+++.|++..+...+....+.++...+...+.+++...+..........+  ..+..++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            4557777777777888999999999999977788999999999999999875333222221222  233334444443 6


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcC
Q 015537          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG  338 (405)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~  338 (405)
                      .-..++..++.+...+++.......               +.+...-..++.......   ...+...-+.+.+..++..
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~---~~~~~~~~f~~~~~~il~~  635 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSE---IRVINDRSFFPRILRILRL  635 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccc---eeehhhhhcchhHHHHhcc
Confidence            7777777777776554431111110               111122222222222211   1112221222226666666


Q ss_pred             CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          339 NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      +..+....-|.|++.+++..+++....+.+.|+++.+.++-.... .   .+++.+|.-.+-+++
T Consensus       636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSE-V---VDVKEEAVLVIESCE  696 (699)
T ss_pred             cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHH-H---HHHHHHHHHHhhccc
Confidence            657788899999999999988887778889999999988754443 2   468888877766654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.055  Score=55.34  Aligned_cols=214  Identities=12%  Similarity=0.092  Sum_probs=131.2

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh
Q 015537          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF  238 (405)
Q Consensus       159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  238 (405)
                      +++..|+..+++.+..++..|+..++.++...|.  ..  ...++..+++++....+.....-+|-+|+.|+... -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            5778888888899999999999999999987762  22  22366777777755557888899999999999874 1222


Q ss_pred             hhhhccHHHHHhhhcCC--------ChHHHHHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537          239 DQVSPALPALAHLIHSN--------DDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (405)
Q Consensus       239 ~~~~~~l~~L~~ll~~~--------d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l  309 (405)
                      .....++|.+..-++.+        ...|+..||..+..++.... ...+.+++.=.-..|+..+-+++...|..|.-++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            33456777777766433        35688888777777765432 2222233221222333444556666777776666


Q ss_pred             hHhhcC--Ch-hhH----------------------HHHH-hcCchHHHHHh-----hcCCCchhHHHHHHHHHHHHhcC
Q 015537          310 GNIVTG--DD-MQT----------------------QCVI-EYQALPCLLNL-----LSGNYKKSIKKEACWTVSNITAG  358 (405)
Q Consensus       310 ~nl~~~--~~-~~~----------------------~~~~-~~g~l~~L~~l-----l~~~~~~~v~~~a~~~L~nl~~~  358 (405)
                      ...+-.  +- ...                      ..+- -.|...++++-     +.+- +..+|+.++|+|.++...
T Consensus       496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~~Ls~~  574 (1133)
T KOG1943|consen  496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALHKLSLT  574 (1133)
T ss_pred             HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHh
Confidence            444311  11 000                      0000 11333333332     2334 889999999999999765


Q ss_pred             CHHHHHHHHHhCcHHHHHHHHhcc
Q 015537          359 NREQIQVIMHVHAFSIIVAFFFMF  382 (405)
Q Consensus       359 ~~~~~~~l~~~~~i~~L~~lL~~~  382 (405)
                      .|+.    ...+.+|+|++...+.
T Consensus       575 ~pk~----~a~~~L~~lld~~ls~  594 (1133)
T KOG1943|consen  575 EPKY----LADYVLPPLLDSTLSK  594 (1133)
T ss_pred             hHHh----hcccchhhhhhhhcCC
Confidence            5543    2346677776665444

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.93  E-value=0.042  Score=56.68  Aligned_cols=160  Identities=24%  Similarity=0.257  Sum_probs=119.0

Q ss_pred             CcHHHHHHHhcC----CCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC
Q 015537          116 GVVPRFVEFLLR----EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDS  190 (405)
Q Consensus       116 g~l~~Li~lL~~----~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~  190 (405)
                      .+.|.+++..+.    ++ |++|..|.-+|+.+..-+.+...     ..+|.|+..+. ++++.++.+++-++|-++-.-
T Consensus       919 ~f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            357777777753    34 89999999999998886555443     45889999997 789999999999999998655


Q ss_pred             hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh
Q 015537          191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (405)
Q Consensus       191 ~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l  270 (405)
                      |..-+.     .-+.|...| .+.++.+++.|..++++|..++    ...+.|.++-+..++.++++.|..-|=..+..|
T Consensus       993 pnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  993 PNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             ccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            533221     345666667 8899999999999999998763    455689999999999999998887777666666


Q ss_pred             ccCChhHHHHHHhcCChHHHHHhcCCC
Q 015537          271 SDGTNDKIQAVIEAGVFPRLAEFLMHP  297 (405)
Q Consensus       271 ~~~~~~~~~~~~~~~~l~~L~~lL~~~  297 (405)
                      +...+..+      +++|-++.-|+++
T Consensus      1063 s~k~n~iy------nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGNTIY------NLLPDILSRLSNG 1083 (1251)
T ss_pred             hhcccchh------hhchHHHHhhccC
Confidence            65443221      3455555555544

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.93  E-value=0.0091  Score=59.73  Aligned_cols=186  Identities=17%  Similarity=0.116  Sum_probs=125.9

Q ss_pred             HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC---------C----ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh
Q 015537          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ---------P----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (405)
Q Consensus       204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~---------~----~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l  270 (405)
                      ..++.+| +  ++++-..+..++.-+..+.+.         .    .......++|.++..+++.+..++..-+.+|+++
T Consensus       818 ~klld~L-s--~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshV  894 (1030)
T KOG1967|consen  818 EKLLDLL-S--GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHV  894 (1030)
T ss_pred             HHHHHhc-C--CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence            4556666 2  344555555666655544311         1    1123467899999999877788888888999998


Q ss_pred             ccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCc--hhHHHHH
Q 015537          271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--KSIKKEA  348 (405)
Q Consensus       271 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~--~~v~~~a  348 (405)
                      ..+-+...-.-.-..++|.|++.|+-+|..++..++.+|..+..........-++ -++|.+..+-.+..+  ..+|..|
T Consensus       895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~A  973 (1030)
T KOG1967|consen  895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDA  973 (1030)
T ss_pred             HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHH
Confidence            8766653211122367889999999999999999999999888655533332222 478888888777621  5788999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537          349 CWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL  398 (405)
Q Consensus       349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a  398 (405)
                      .-+|..++..-|...-.-..-.++..|+..|....     ..||++|.-+
T Consensus       974 LqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-----RlVR~eAv~t 1018 (1030)
T KOG1967|consen  974 LQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-----RLVRKEAVDT 1018 (1030)
T ss_pred             HHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-----HHHHHHHHHH
Confidence            99999998854443333445677788888886542     3699999754

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.92  E-value=0.096  Score=45.65  Aligned_cols=102  Identities=15%  Similarity=0.082  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~  209 (405)
                      +.....|+.+|.-++--.+..+..+.....+..|+.+|.. ..+.++..++.+|..+..+++.+...+-+.+++..++.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            3456668889988888889999999999999999999954 678999999999999999999999999999999999999


Q ss_pred             hhCC-CchhHHHHHHHHHHHhhcC
Q 015537          210 LNGQ-PKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       210 l~~~-~~~~~~~~a~~~l~~l~~~  232 (405)
                      +... .+.+++-.++.+|+-....
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHcc
Confidence            9533 3778877777777655443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.033  Score=55.48  Aligned_cols=221  Identities=12%  Similarity=0.109  Sum_probs=137.3

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhc
Q 015537          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP  243 (405)
Q Consensus       164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  243 (405)
                      .+..+.++-+.++-.++..|..++.... -...+...+++...++.+ .+.|+-+.-++...+..||.--|       ..
T Consensus       732 ai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~  802 (982)
T KOG4653|consen  732 AISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------ED  802 (982)
T ss_pred             HHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hh
Confidence            4445555667789999999999987553 335566778888999999 88899999999999999998633       45


Q ss_pred             cHHHHHhh-hcCCC---hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhh
Q 015537          244 ALPALAHL-IHSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (405)
Q Consensus       244 ~l~~L~~l-l~~~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  319 (405)
                      ++|-+... .+..+   ++.+..+-.++.+++..-.+......+ -++..++..+.+++...|..++..+|++|.-.+.+
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            66766663 32221   222222224455544332222222221 34456666667777788999999999999755533


Q ss_pred             HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhcccccchhhhHHHHHH
Q 015537          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH---VHAFSIIVAFFFMFLHFFFGAIIYKLAI  396 (405)
Q Consensus       320 ~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~lL~~~~~~~~~~~vr~~A~  396 (405)
                      ....+ ...+..++.+...+....+|+.|...+..+-.|..+..-.+..   .+....+..+.....+.    .+|.+|+
T Consensus       882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd----~~klhaq  956 (982)
T KOG4653|consen  882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDD----GLKLHAQ  956 (982)
T ss_pred             hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchh----HHHHHHH
Confidence            32211 1245556666665547899999999999998765543333332   23333444444333333    4666666


Q ss_pred             HHH
Q 015537          397 WLC  399 (405)
Q Consensus       397 ~al  399 (405)
                      .++
T Consensus       957 l~l  959 (982)
T KOG4653|consen  957 LCL  959 (982)
T ss_pred             HHH
Confidence            554

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.033  Score=58.84  Aligned_cols=220  Identities=18%  Similarity=0.201  Sum_probs=137.0

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (405)
                      ..+-.|+++-++.-...-+.-|+.-++.|+...-+..+.... ..||.|.++=.+++..|+.....+...|..|+...-+
T Consensus       956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen  956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred             HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH
Confidence            346667777766554566888888888888864333332322 5789999988999999998777777777777665555


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh-hhhccHHHHHhhhcCCChHHHHH---HHHHHHHhc
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTD---ACWALSYLS  271 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~---a~~~l~~l~  271 (405)
                      ..+. .+++.|+.-+ .+..-.+++.+|.+|..|.++.|..... .+..+...+...+.+=.+.|+..   ++.+|+.++
T Consensus      1035 ~y~n-eIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1035 EYLN-EILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred             HHHH-HHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443 3677777777 7778899999999999999996543332 22333334444443323556655   456666665


Q ss_pred             cCChhHHHHHHhcCChHHHHHhc-----CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 015537          272 DGTNDKIQAVIEAGVFPRLAEFL-----MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN  339 (405)
Q Consensus       272 ~~~~~~~~~~~~~~~l~~L~~lL-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~  339 (405)
                      -...+...-.-...++..++++|     -+.-++++..++.++..++.+........ -..++|.|+..+..-
T Consensus      1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSEL 1184 (1702)
T ss_pred             hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHcccc
Confidence            32111111011112233344433     24557899999999999987665433322 235677777777655

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.53  Score=50.38  Aligned_cols=297  Identities=14%  Similarity=0.157  Sum_probs=165.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      ||.|.+.=..+++.+|..-...+.-+.... ...++... ..++.-|+.-|.+.. ..+|+.++.+|..+..+.+..  .
T Consensus      1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~-k~~vd~y~-neIl~eLL~~lt~ke-wRVReasclAL~dLl~g~~~~--~ 1074 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDS-KKVVDEYL-NEILDELLVNLTSKE-WRVREASCLALADLLQGRPFD--Q 1074 (1702)
T ss_pred             hHHHhhhccCCcHHHHHHHHHHHHHhccCh-HHHHHHHH-HHHHHHHHHhccchh-HHHHHHHHHHHHHHHcCCChH--H
Confidence            566666666677778776666665554322 33333332 345666777777777 799999999999999984432  2


Q ss_pred             HHhC--CChHHHHHhhCCCCHHHHH---HHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----CCCchhHHHHHHHH
Q 015537          155 VIDH--GAVPIFVKLLYSPSDDVRE---QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----GQPKLSMLRNATWT  225 (405)
Q Consensus       155 ~~~~--g~i~~L~~lL~~~~~~i~~---~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~----~~~~~~~~~~a~~~  225 (405)
                      +.+.  .+-..+.+.+.+-...+|+   .++.+|+.++.-.-....-.....++..++..|.    -++-.++++.++.+
T Consensus      1075 ~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence            2221  3445555666654445554   4566677766211101111111223444444442    24568899999999


Q ss_pred             HHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh------------ccCCh--hHHHHH-------Hhc
Q 015537          226 LSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL------------SDGTN--DKIQAV-------IEA  284 (405)
Q Consensus       226 l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l------------~~~~~--~~~~~~-------~~~  284 (405)
                      +.-|+...+.........++|.|......-.+.|..+...-+.+.            +.+++  +.+...       +=.
T Consensus      1155 l~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLe 1234 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLE 1234 (1702)
T ss_pred             HHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHH
Confidence            999999876655555567777777776655555544322111111            11111  001111       111


Q ss_pred             CChHHHHHhcCCC-CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHH
Q 015537          285 GVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQ  362 (405)
Q Consensus       285 ~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~  362 (405)
                      ..+|.+.+++... ....+..+...+.-++..-..... ......+..+...+.+. ++.+++.-+.+.+.++. .++++
T Consensus      1235 elip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt-P~sgKll~al~~g~~dR-Nesv~kafAsAmG~L~k~Ss~dq 1312 (1702)
T KOG0915|consen 1235 ELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT-PYSGKLLRALFPGAKDR-NESVRKAFASAMGYLAKFSSPDQ 1312 (1702)
T ss_pred             HHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-cchhHHHHHHhhccccc-cHHHHHHHHHHHHHHHhcCChHH
Confidence            3456666666433 223344444444444432110000 01113667777777777 89999999999999986 56778


Q ss_pred             HHHHHHhCcHHHHHHHHhcc
Q 015537          363 IQVIMHVHAFSIIVAFFFMF  382 (405)
Q Consensus       363 ~~~l~~~~~i~~L~~lL~~~  382 (405)
                      .+.+++.    .+..++...
T Consensus      1313 ~qKLie~----~l~~~l~k~ 1328 (1702)
T KOG0915|consen 1313 MQKLIET----LLADLLGKD 1328 (1702)
T ss_pred             HHHHHHH----HHHHHhccC
Confidence            8877653    444444443

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.054  Score=53.52  Aligned_cols=259  Identities=16%  Similarity=0.158  Sum_probs=145.9

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH---
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT---  152 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~---  152 (405)
                      +-+=.++.+....+..+|+..+..+-.    ...+.+..  .+..|--+++++. +.+|+.|.++|..++...|..-   
T Consensus       248 ~fl~s~l~~K~emV~~EaArai~~l~~----~~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~c  320 (865)
T KOG1078|consen  248 PFLESCLRHKSEMVIYEAARAIVSLPN----TNSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTVC  320 (865)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhccc----cCHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCcccccc
Confidence            344446667788999999999888742    22233222  5777778888888 8999999999999988655421   


Q ss_pred             -----HHHHhCC---ChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChh-----hHHH-----HHhcCChHHHHHhh
Q 015537          153 -----KVVIDHG---AVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPR-----CRDL-----VLSQGGLVPLLAQL  210 (405)
Q Consensus       153 -----~~~~~~g---~i~~L~~lL~~~~----~~i~~~a~~~L~nl~~~~~~-----~~~~-----i~~~~~i~~L~~~l  210 (405)
                           ..+-+.+   ....+..+|+...    ..+..+......+++.+...     .+..     ....+.+..|.++|
T Consensus       321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L  400 (865)
T KOG1078|consen  321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML  400 (865)
T ss_pred             chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence                 1111111   2233444554432    23444444444444432210     0000     01233445555556


Q ss_pred             hCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHH
Q 015537          211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (405)
Q Consensus       211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L  290 (405)
                      .+.+..+..+....++..+....|.....    ++..|...+.+  -+....+...|..+....+..   ......+..+
T Consensus       401 r~eGg~e~K~aivd~Ii~iie~~pdsKe~----~L~~LCefIED--ce~~~i~~rILhlLG~EgP~a---~~Pskyir~i  471 (865)
T KOG1078|consen  401 REEGGFEFKRAIVDAIIDIIEENPDSKER----GLEHLCEFIED--CEFTQIAVRILHLLGKEGPKA---PNPSKYIRFI  471 (865)
T ss_pred             HhccCchHHHHHHHHHHHHHHhCcchhhH----HHHHHHHHHHh--ccchHHHHHHHHHHhccCCCC---CCcchhhHHH
Confidence            55556666777777777666654433332    33334443322  122223333333332221100   0011223344


Q ss_pred             HHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       291 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      ...+.-.+..++..|+.++.++..+++....     .+...+.+++.+. +..+|..|.+.|.++-
T Consensus       472 yNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  472 YNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence            4444445677899999999999866654333     4566788888888 9999999999999996

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.82  E-value=0.45  Score=48.66  Aligned_cols=254  Identities=14%  Similarity=0.165  Sum_probs=149.2

Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC
Q 015537          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGD  189 (405)
Q Consensus       115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~  189 (405)
                      ....+.+++-|.++...+.-.+-...++++          +.+.|++..++.++.+     ....+....+..|...+.-
T Consensus        83 geAtE~~v~~l~~~~~~~~d~e~~~~~~~v----------~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv  152 (802)
T PF13764_consen   83 GEATEEFVESLEDDSEEEEDPEQEFKIASV----------LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV  152 (802)
T ss_pred             CccchhhHhhccCccccccCHHHHHHHHHH----------hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh
Confidence            345667777776533122222222233332          2345889999998876     3345666666666665544


Q ss_pred             ChhhHHHHHhcCChHHHHHhhh---CCCc----hhHHHHHHHHHHHhhcCCCCCChh-------------hhhccHHHHH
Q 015537          190 SPRCRDLVLSQGGLVPLLAQLN---GQPK----LSMLRNATWTLSNFCRGKPQPPFD-------------QVSPALPALA  249 (405)
Q Consensus       190 ~~~~~~~i~~~~~i~~L~~~l~---~~~~----~~~~~~a~~~l~~l~~~~~~~~~~-------------~~~~~l~~L~  249 (405)
                       +.+|..+++.|+++.|+..+.   ....    ..+....+..+-.+..........             ....-+..++
T Consensus       153 -~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL  231 (802)
T PF13764_consen  153 -KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLL  231 (802)
T ss_pred             -HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHH
Confidence             668999999999999999884   2322    555555555555444332110000             1123355566


Q ss_pred             hhhcC----CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCC------h
Q 015537          250 HLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGD------D  317 (405)
Q Consensus       250 ~ll~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~------~  317 (405)
                      ..+.+    .++.+....++.|.+|+.++.+..+.+++.  +...+++=..+  ...--...+.++..++.+-      .
T Consensus       232 ~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~  309 (802)
T PF13764_consen  232 ERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGN  309 (802)
T ss_pred             HHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchH
Confidence            65554    468999999999999999999887777643  22222221111  1111123355566666432      3


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCC-------chh--------HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537          318 MQTQCVIEYQALPCLLNLLSGNY-------KKS--------IKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMF  382 (405)
Q Consensus       318 ~~~~~~~~~g~l~~L~~ll~~~~-------~~~--------v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~  382 (405)
                      ...+.+++.|++...+..|....       ++.        --..+...|.-++.++.. .|.++..+++ ++++.|..-
T Consensus       310 ~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l-~~lH~LEqv  387 (802)
T PF13764_consen  310 RLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEP-TQLLIAEQLL-PLLHRLEQV  387 (802)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHH-HHHHHHhhHH-HHHHHhhcC
Confidence            56788899999998888776431       111        224467777778777665 4566777888 455555544


Q ss_pred             c
Q 015537          383 L  383 (405)
Q Consensus       383 ~  383 (405)
                      .
T Consensus       388 s  388 (802)
T PF13764_consen  388 S  388 (802)
T ss_pred             C
Confidence            3

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.76  E-value=0.15  Score=48.86  Aligned_cols=208  Identities=14%  Similarity=0.129  Sum_probs=120.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i  197 (405)
                      .|.|-..|++.. +.+..++++.++.++..+  .-..+++ ..+..|-.+|.++....+-.|+.+|..|+...|.-   +
T Consensus       266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v  338 (898)
T COG5240         266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---V  338 (898)
T ss_pred             HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---e
Confidence            455555566555 789999999999987753  1122222 35677888899999999999999999999877742   1


Q ss_pred             HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC---CChHHHHHHHHHHHHhccCC
Q 015537          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS---NDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       198 ~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~---~d~~v~~~a~~~l~~l~~~~  274 (405)
                      .-  .-+.+-.++ .+.+..+-..|   +..|.........   ..++..+..++++   +=.-+..+|++.|+.+-   
T Consensus       339 ~v--cN~evEsLI-sd~Nr~IstyA---ITtLLKTGt~e~i---drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F---  406 (898)
T COG5240         339 SV--CNKEVESLI-SDENRTISTYA---ITTLLKTGTEETI---DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF---  406 (898)
T ss_pred             ee--cChhHHHHh-hcccccchHHH---HHHHHHcCchhhH---HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---
Confidence            11  112333344 55555554444   4444433222222   2333333444432   22445566666665543   


Q ss_pred             hhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (405)
                      +.....     .+..|...| +.+..+.+..++.+|+.+....++-.+     .+++.|..++.+.   +..+-+..+|+
T Consensus       407 p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDc---ey~~I~vrIL~  473 (898)
T COG5240         407 PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDC---EYHQITVRILG  473 (898)
T ss_pred             cHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhc---chhHHHHHHHH
Confidence            322221     234555554 345567888888888888877665544     3466677777766   23334455555


Q ss_pred             HHhc
Q 015537          354 NITA  357 (405)
Q Consensus       354 nl~~  357 (405)
                      -+..
T Consensus       474 iLG~  477 (898)
T COG5240         474 ILGR  477 (898)
T ss_pred             Hhcc
Confidence            5544

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.051  Score=54.23  Aligned_cols=223  Identities=11%  Similarity=0.073  Sum_probs=141.5

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 015537          122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG  201 (405)
Q Consensus       122 i~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~  201 (405)
                      +..+.++. +.++..++.-|..+.... +....+...+++...+..|++.++-+--.|+..+..+|.-.+        ..
T Consensus       733 i~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~  802 (982)
T KOG4653|consen  733 ISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------ED  802 (982)
T ss_pred             HHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hh
Confidence            33444444 678999999999999864 445556666899999999999999999999998888885433        23


Q ss_pred             ChHHHHHhhhCCC---chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHH
Q 015537          202 GLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI  278 (405)
Q Consensus       202 ~i~~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~  278 (405)
                      +++.+.....+.+   .++.+-.+-.++.++.+.-..........++......+.++|...+..++..++.++.......
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v  882 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV  882 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence            5566666442221   2344445556777776654444444445666777777888888889999999999985433222


Q ss_pred             HHHHhcCChHHHHHhcC-CCCcchHHHHHHHHhHhhcCChhhHHHHH---hcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          279 QAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVI---EYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       279 ~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~---~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                      .-.+ ..++..++.+.. +++.-+|.+|+..+..+..|.....-.+.   .......+........+..++..|+.++--
T Consensus       883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            1111 122344444443 55678999999999999877653332222   122334444444444355566666655543


Q ss_pred             H
Q 015537          355 I  355 (405)
Q Consensus       355 l  355 (405)
                      +
T Consensus       962 i  962 (982)
T KOG4653|consen  962 I  962 (982)
T ss_pred             H
Confidence            3

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.031  Score=53.22  Aligned_cols=97  Identities=19%  Similarity=0.300  Sum_probs=60.2

Q ss_pred             HHHhhhcCCChHHHHHHHHHHH--HhccCChhHHHHHHhcCChHHHHHh-cCCCCcchHHHHHHHHhHhhcCChhhHHHH
Q 015537          247 ALAHLIHSNDDEVLTDACWALS--YLSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCV  323 (405)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~  323 (405)
                      .+.+++.+.|+-.+.....+++  +.-.++         .|++..++.. .++.+.+|+..|+-+||-+|+.+.      
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence            4556666666666665554443  222222         1344555555 466677788888888887776543      


Q ss_pred             HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (405)
Q Consensus       324 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (405)
                         ..++..+.+|..++++.||-..+.+|+-.|+++-.
T Consensus       585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~  619 (926)
T COG5116         585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD  619 (926)
T ss_pred             ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence               34555666676666788888888888877775444

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.68  E-value=0.14  Score=46.49  Aligned_cols=189  Identities=17%  Similarity=0.155  Sum_probs=114.7

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC--CCCCCh
Q 015537          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG--KPQPPF  238 (405)
Q Consensus       163 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~--~~~~~~  238 (405)
                      ..+..+.......|+.++..|.++...... .+.+..  .-.+..+.+.+.+.. .+-+..++.++.-++-.  ......
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCccHH
Confidence            344444556678888888888888754432 122221  113556666664433 34455666767766655  334455


Q ss_pred             hhhhccHHHHHhhhcCCC--hHHHHHHHHHHHHhc---cCChhHHHHHHhcCChH--HHHHhcCC----------CCcch
Q 015537          239 DQVSPALPALAHLIHSND--DEVLTDACWALSYLS---DGTNDKIQAVIEAGVFP--RLAEFLMH----------PSPSV  301 (405)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~l~--~L~~lL~~----------~~~~v  301 (405)
                      .....+.|.|...+....  +.++..++.+|+-++   ..+.+.+...++  .+.  .....++.          +++.+
T Consensus       125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            666788899988887653  456666666665543   333333331111  223  11122221          23568


Q ss_pred             HHHHHHHHhHhhcCChh-hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          302 LIPALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       302 ~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      ...|+.+.+-+.+.-+. .....+ ...++.|..+|.++ +..||..|.-+|.-|..
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            88999999888875554 222222 34699999999999 99999999999888854

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.67  E-value=0.02  Score=47.99  Aligned_cols=147  Identities=14%  Similarity=0.173  Sum_probs=89.9

Q ss_pred             HHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHh
Q 015537           35 EIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR  114 (405)
Q Consensus        35 ~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~  114 (405)
                      ++=..+|-+++.+.+......... +.  ..............++..+.+.....  ..+..|+..+.......++.|++
T Consensus        31 ~~~~ekKw~li~~~~~~~~~~~~~-~~--~~~~~~~~~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~  105 (187)
T PF06371_consen   31 NLPPEKKWQLIQQHRQKQAKHSSS-SS--KSKSKASAKSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLE  105 (187)
T ss_dssp             TS-HHHHHHHHHHHHHH--------------------CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-H
T ss_pred             CCCHHHHHHHHHhHHHhccccchh-hh--hhhhhhhhhhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhcc
Confidence            344566667776666543222200 00  00000011123467788887765432  45556666665442344678999


Q ss_pred             cCcHHHHHHHhcCC--------CCHHHHHHHHHHHHHHhcCCchhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 015537          115 SGVVPRFVEFLLRE--------DYPQLQFEAAWALTNIASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGN  185 (405)
Q Consensus       115 ~g~l~~Li~lL~~~--------~~~~~~~~a~~~L~ni~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~n  185 (405)
                      .|++..|+++|..-        ....+..+++.||..|... ......++. .+++..|+..|.+++..++..++..|+-
T Consensus       106 ~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~  184 (187)
T PF06371_consen  106 LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAA  184 (187)
T ss_dssp             HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            99999999988531        2257899999999999887 455666665 5899999999999999999999999998


Q ss_pred             hh
Q 015537          186 IA  187 (405)
Q Consensus       186 l~  187 (405)
                      +|
T Consensus       185 lc  186 (187)
T PF06371_consen  185 LC  186 (187)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.64  E-value=0.0047  Score=46.66  Aligned_cols=71  Identities=15%  Similarity=0.260  Sum_probs=61.0

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~  187 (405)
                      ++..|+++|..++++....-|+.=|+.++...|..+..+-+.|+-..+..++.+++++|+.+|+.++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            58899999965544888888999999999988999988888899999999999999999999999998775

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.56  E-value=0.28  Score=44.54  Aligned_cols=171  Identities=16%  Similarity=0.124  Sum_probs=111.2

Q ss_pred             CcHHHHH-HHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChhh
Q 015537          116 GVVPRFV-EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG-DSPRC  193 (405)
Q Consensus       116 g~l~~Li-~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~-~~~~~  193 (405)
                      +++..|+ .-+++.+ +.+|..|+.|||-.+--+.+...     ..++.+...++.+++.++..|+.++..+.. ++...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4565555 6677777 89999999999999887554332     236677777777799999999999999873 22211


Q ss_pred             HHHHH-------hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC----CChHHHHH
Q 015537          194 RDLVL-------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTD  262 (405)
Q Consensus       194 ~~~i~-------~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~  262 (405)
                      -+...       ....+..+.+.+ .+.+++++..++..++.|.-...-..   ...++..|+-+.-+    ++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            11111       123455666666 56688999999999999877652222   22344443333222    34566666


Q ss_pred             HHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC
Q 015537          263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP  297 (405)
Q Consensus       263 a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  297 (405)
                      ....+-..+..+..+ +..+...+++.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            666666677666655 4566667777777777544

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=96.53  E-value=0.65  Score=43.59  Aligned_cols=265  Identities=14%  Similarity=0.130  Sum_probs=146.8

Q ss_pred             cCCChHHHHHHHHHHHHhhccCCCCc-hHHHHhcCcHHHHHHHhc----C------CCCHHHHHHHHHHHHHHhcCCchh
Q 015537           83 WSNDSGVQYECTTQFRKLLSIERSPP-IEEVIRSGVVPRFVEFLL----R------EDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~s~~~~~~-~~~~~~~g~l~~Li~lL~----~------~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      .+.+...+..|...|.+.+...++.+ .+.+.+.  ++.|+++++    +      +.+..+..+|+.+|+.+..+ ++.
T Consensus         3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k--~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i   79 (372)
T PF12231_consen    3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDK--MSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEI   79 (372)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHH
Confidence            34566777777777777766553333 3333322  455555443    1      11367889999999998876 444


Q ss_pred             HHHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh---C-CCchhHHHHH
Q 015537          152 TKVVIDHG---AVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G-QPKLSMLRNA  222 (405)
Q Consensus       152 ~~~~~~~g---~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~---~-~~~~~~~~~a  222 (405)
                      ...+-+.-   ++...+..+.+  .+..+....+|+|..=--.     ..++....+..++..+.   + -+...+....
T Consensus        80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er  154 (372)
T PF12231_consen   80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISER  154 (372)
T ss_pred             HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence            43333221   34555666644  3556777888887753211     12233334444444432   2 4567788888


Q ss_pred             HHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc--CC-hhHHH---HHHhc----C-----Ch
Q 015537          223 TWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--GT-NDKIQ---AVIEA----G-----VF  287 (405)
Q Consensus       223 ~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~--~~-~~~~~---~~~~~----~-----~l  287 (405)
                      +.++.+|....|..-......-+|.++..+-+....++..|...+..+..  +. .....   ...+.    +     +.
T Consensus       155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~  234 (372)
T PF12231_consen  155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC  234 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence            88999888876654444445567777777667777777765554444321  11 11111   11111    2     23


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       288 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      +.|..++.+.+......-+|..--..-++......-.-...+......+.++ ++.+|.+|..+-..++
T Consensus       235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~li  302 (372)
T PF12231_consen  235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLI  302 (372)
T ss_pred             HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence            3466666664444444444444333333332111111224666667777888 9999988876666665

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.51  E-value=0.2  Score=42.80  Aligned_cols=144  Identities=13%  Similarity=0.146  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCC-chhHHHHHhCCChH
Q 015537           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----DYPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVP  162 (405)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~----~~~~~~~~a~~~L~ni~~~~-~~~~~~~~~~g~i~  162 (405)
                      .-...|+..+..++|.  .+....+++..+--.|..+|..+    ..+-+|..++.+++.+...+ .+....+...++||
T Consensus        94 nRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   94 NRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             chHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            3445566666666553  56677788887666666676543    24779999999999998854 45566777889999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH------HHhc-CChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL------VLSQ-GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       163 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~------i~~~-~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      ..++.+..++..-+..|..++..|..++....-.      +..- ..+..++..+.+.++..+.++++.+..+|+.+.
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            9999999999999999999999998877543222      1111 123445555557789999999999999999873

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.51  E-value=0.017  Score=59.32  Aligned_cols=136  Identities=18%  Similarity=0.114  Sum_probs=103.6

Q ss_pred             hhhccHHHHHhhhc----CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-CCCcchHHHHHHHHhHhhc
Q 015537          240 QVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       240 ~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~  314 (405)
                      .+..+.|.++++..    .+||+++..|..+|+.+..-+.+...     .-+|.|+..+. ++++.++..++-++|.++-
T Consensus       916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav  990 (1251)
T KOG0414|consen  916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV  990 (1251)
T ss_pred             HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence            34567788888874    46899999999999999876655443     33688999995 8899999999999999987


Q ss_pred             CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHH
Q 015537          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKL  394 (405)
Q Consensus       315 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~  394 (405)
                      .-+...+     ..-+.|...|.+. ++.+|+.|..+|++|...+.     +--.|.++.+..+|..+..     .|+.-
T Consensus       991 ~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~-----~Isdl 1054 (1251)
T KOG0414|consen  991 RFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNA-----EISDL 1054 (1251)
T ss_pred             hcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcH-----HHHHH
Confidence            6664444     4567789999999 99999999999999975422     2237888888888865532     46655


Q ss_pred             HH
Q 015537          395 AI  396 (405)
Q Consensus       395 A~  396 (405)
                      |-
T Consensus      1055 Ak 1056 (1251)
T KOG0414|consen 1055 AK 1056 (1251)
T ss_pred             HH
Confidence            54

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.49  E-value=0.098  Score=48.77  Aligned_cols=184  Identities=13%  Similarity=0.113  Sum_probs=120.2

Q ss_pred             HHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           75 LPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        75 l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      +..++..+.+. ..+.+..|+..|..++..+.-..+++.. ..++..+++.|....++..+..|+++|..++...+.   
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---  363 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---  363 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---
Confidence            34445555443 4677888898899988765333334332 235777888888744488999999999999986443   


Q ss_pred             HHHhC--CChHHHHHhhCCCCHHHHHHHHH-HHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537          154 VVIDH--GAVPIFVKLLYSPSDDVREQAVW-ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (405)
Q Consensus       154 ~~~~~--g~i~~L~~lL~~~~~~i~~~a~~-~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  230 (405)
                      .+.+.  -+|..++..-.+.++++...|.. |+.-++.+.|.. .       +..+..++ ...|......++..+..++
T Consensus       364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-~-------I~~i~~~I-lt~D~~~~~~~iKm~Tkl~  434 (516)
T KOG2956|consen  364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-C-------IVNISPLI-LTADEPRAVAVIKMLTKLF  434 (516)
T ss_pred             hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-H-------HHHHhhHH-hcCcchHHHHHHHHHHHHH
Confidence            23322  24566666666666665555554 455556666632 1       22233444 3356667777777888888


Q ss_pred             cCCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537          231 RGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (405)
Q Consensus       231 ~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (405)
                      ..-+... ...+..+.|.+++-..+....|+..++.||.++.
T Consensus       435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            7643222 2344788899999999999999999999998875

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.46  E-value=0.0045  Score=34.77  Aligned_cols=29  Identities=28%  Similarity=0.434  Sum_probs=25.7

Q ss_pred             chHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      ++|.+.+++.++ ++.||..|+++|+.++.
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            478999999999 99999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.43  E-value=0.11  Score=48.75  Aligned_cols=145  Identities=15%  Similarity=0.181  Sum_probs=108.0

Q ss_pred             CCchHHHHh-cCcHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-C---CCHHHHHH
Q 015537          106 SPPIEEVIR-SGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-S---PSDDVREQ  178 (405)
Q Consensus       106 ~~~~~~~~~-~g~l~~Li~lL~~~~--~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~---~~~~i~~~  178 (405)
                      ....+.+++ ..++..|...+++..  -+.+-..|+.++..+....|..-..+.+.|+++.++..+. .   ++.++...
T Consensus        95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~  174 (379)
T PF06025_consen   95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS  174 (379)
T ss_pred             ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence            344555667 566777788887654  2688899999999999999999999999999999999887 4   57788888


Q ss_pred             HHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCc------hhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhh
Q 015537          179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK------LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL  251 (405)
Q Consensus       179 a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~l  251 (405)
                      .-.+|+-||-+.. ..+.+.+.+.++.+++.+.+...      .+.....-..+-.|.++.|.-....+..++..+-++
T Consensus       175 lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l  252 (379)
T PF06025_consen  175 LPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRL  252 (379)
T ss_pred             HHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            8899999997766 55778888999999999833221      245566667777888887665555554444444443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.41  E-value=0.048  Score=47.21  Aligned_cols=141  Identities=12%  Similarity=0.163  Sum_probs=101.1

Q ss_pred             HHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHHhc-CCchhHHHHHhCCChHHHH
Q 015537           91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFV  165 (405)
Q Consensus        91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~----~~~~~~~a~~~L~ni~~-~~~~~~~~~~~~g~i~~L~  165 (405)
                      ..|+..|..+++ + .+....++++.+.-.|..+|+..+    .+.+|..++.+++.+.. ++++....+.+.+++|..+
T Consensus        68 cnaLaLlQ~vAs-h-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   68 CNALALLQCVAS-H-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHc-C-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            445555556655 3 677888999998777788886543    36789999999999888 3466778888999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChhhHHH------HH-hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDL------VL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       166 ~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~------i~-~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      +.++.++.--+..|...+..|..++....-.      +. -..++..++..+...+++.+.+++.+|-..|+.+.
T Consensus       146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            9999998888999999999887665433211      11 11245556666667889999999999999999884

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.38  E-value=0.45  Score=45.23  Aligned_cols=263  Identities=14%  Similarity=0.135  Sum_probs=157.3

Q ss_pred             HHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC
Q 015537           91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS  170 (405)
Q Consensus        91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~  170 (405)
                      ..+...|..++......+....++..++..|+.++.+++ +.-|.....+|.++-......|..+.. .+...+..++..
T Consensus       108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e  185 (409)
T PF01603_consen  108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYE  185 (409)
T ss_dssp             HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcC
Confidence            345555666654322222344667778999999999998 899999999999987765666665543 556677777764


Q ss_pred             -CCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHH
Q 015537          171 -PSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL  248 (405)
Q Consensus       171 -~~~~i~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L  248 (405)
                       ....-...++..++.+..+-. +.++..... ....++.+.....-.........++..++..+|.    ....++..+
T Consensus       186 ~~~~~gI~elLeil~sii~gf~~plk~eh~~f-l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~l  260 (409)
T PF01603_consen  186 TERHNGIAELLEILGSIINGFAVPLKEEHKQF-LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGL  260 (409)
T ss_dssp             TS--STHHHHHHHHHHHHTT--SS--HHHHHH-HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHhccCCCCcHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHH
Confidence             455667778899999886522 232221110 1234444553333455577777888888776542    223444555


Q ss_pred             HhhhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhc-
Q 015537          249 AHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY-  326 (405)
Q Consensus       249 ~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~-  326 (405)
                      +..--..++.-..--+.-+..+...-+ .... -+..-++..+...+++.+..|.+.|+..+.|     +.... ++.. 
T Consensus       261 lk~WP~t~s~Kev~FL~el~~il~~~~~~~f~-~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~  333 (409)
T PF01603_consen  261 LKHWPKTNSQKEVLFLNELEEILEVLPPEEFQ-KIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQN  333 (409)
T ss_dssp             HHHS-SS-HHHHHHHHHHHHHHHTT--HHHHH-HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCT
T ss_pred             HHhCCCCCchhHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhC
Confidence            555555666555556666666655432 2222 2223466778888899998888888766533     22222 3322 


Q ss_pred             --CchHHHHHhhcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015537          327 --QALPCLLNLLSGN----YKKSIKKEACWTVSNITAGNREQIQVIM  367 (405)
Q Consensus       327 --g~l~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (405)
                        .++|.+...+...    =+..|+..|.-++.-+..-+++..+.+.
T Consensus       334 ~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~  380 (409)
T PF01603_consen  334 SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCA  380 (409)
T ss_dssp             HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence              2667777766542    1678999999999999888887666543

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.34  E-value=0.033  Score=38.23  Aligned_cols=67  Identities=16%  Similarity=0.236  Sum_probs=51.1

Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 015537          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH  370 (405)
Q Consensus       302 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (405)
                      .+.|+|++|++++. +.....+.+.++++.++++..+.+...+|-.+.++|+-++ .+.+-.+.+-+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis-~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS-STEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence            46799999999864 4445556678999999999998868889999999998885 4555555554444

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.29  E-value=0.0081  Score=33.70  Aligned_cols=30  Identities=27%  Similarity=0.399  Sum_probs=26.1

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASG  147 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~  147 (405)
                      ++|.+++++++++ +.+|..|+++|+.++..
T Consensus         1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPS-PEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SS-HHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCC-HHHHHHHHHHHHHHHhh
Confidence            4799999999998 99999999999999763

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.24  E-value=0.054  Score=49.16  Aligned_cols=169  Identities=17%  Similarity=0.164  Sum_probs=109.5

Q ss_pred             HHHHH-HhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-CchhH
Q 015537           75 LPVMV-AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEHT  152 (405)
Q Consensus        75 l~~l~-~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~-~~~~~  152 (405)
                      +..++ ..+++.++.++..|+.++.-..-.+ ....     ...++.|...++.++ +.++..|+.++..+... ....-
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld-~~~a-----~~~l~l~~~~~~~~~-~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCLLD-KELA-----KEHLPLFLQALQKDD-EEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-hHHH-----HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCchhc
Confidence            44554 6888999999999999998876544 2111     223777888887766 89999999999997653 12222


Q ss_pred             HHHH-------hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh-h--CCCchhHHHHH
Q 015537          153 KVVI-------DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-N--GQPKLSMLRNA  222 (405)
Q Consensus       153 ~~~~-------~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l-~--~~~~~~~~~~a  222 (405)
                      ....       ...++..+...+.+.+++++..++..++.|.-.+.-..    ....+..|+-.. .  ...+..++...
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence            1111       23567888889999999999999999999875443221    012233333332 1  22346677777


Q ss_pred             HHHHHHhhcCCCCCChhhhhccHHHHHhhhcC
Q 015537          223 TWTLSNFCRGKPQPPFDQVSPALPALAHLIHS  254 (405)
Q Consensus       223 ~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~  254 (405)
                      ..++-.+|...+..+......++|.+..+...
T Consensus       177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            77777777765544444445666666665544

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.22  E-value=0.52  Score=44.33  Aligned_cols=192  Identities=13%  Similarity=0.080  Sum_probs=118.5

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCc--hHHHHhcCcHHHHHHHhcCCC----CH--HHHHHHHHHHHHHhc
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED----YP--QLQFEAAWALTNIAS  146 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~l~~Li~lL~~~~----~~--~~~~~a~~~L~ni~~  146 (405)
                      ...+...++..+.+.++.|+-...++..+.+-..  .+.+.+.-+.+.+-++|.+.+    .|  -.+.-++.+|+-.|.
T Consensus        13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            3456667777788899999999999987653222  234778878888989987643    12  345566677777777


Q ss_pred             CCchhH--HHHHhCCChHHHHHhhCC-CCHH------HHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchh
Q 015537          147 GTSEHT--KVVIDHGAVPIFVKLLYS-PSDD------VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS  217 (405)
Q Consensus       147 ~~~~~~--~~~~~~g~i~~L~~lL~~-~~~~------i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~  217 (405)
                      . ++..  ..++  +.||.|+.++.. .+++      +.+.+..+|.-+++..+ ....++..|+++.+.+... .++..
T Consensus        93 ~-pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~-~~~~~  167 (698)
T KOG2611|consen   93 V-PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYE-LPDGS  167 (698)
T ss_pred             C-hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHh-CCCCc
Confidence            6 4422  2333  579999999975 2333      88999999999998865 4566678899999987663 22221


Q ss_pred             HHHH-HHHHHHHhhcC-C-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537          218 MLRN-ATWTLSNFCRG-K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (405)
Q Consensus       218 ~~~~-a~~~l~~l~~~-~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (405)
                      .-.. ++..+.-+..+ . -.........++..+..-+...+....-+.|..|..+.
T Consensus       168 ~d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  168 HDMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             hhHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            1111 11111111111 1 22223333334555554455556667778888887543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.21  E-value=0.29  Score=50.07  Aligned_cols=186  Identities=16%  Similarity=0.134  Sum_probs=129.6

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~  155 (405)
                      +.+-..+-+.++..+.+|+..+...++.. . ....-...|.+-.++.....+.+-.+...|+.+|.-|+......-..+
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~-~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEA-K-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhcc-c-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            44455666789999999999999988643 1 111122345566666665554447899999999999998654442222


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-C
Q 015537          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P  234 (405)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~  234 (405)
                       ..+..|.|+.-+......+++.+..++--++...+.       ....+.++..+ ++.++.++..+...+....... +
T Consensus       334 -~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  334 -AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             -HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence             236788999999888888888777777666643321       12455667777 8889999888666666555543 2


Q ss_pred             C-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537          235 Q-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (405)
Q Consensus       235 ~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (405)
                      . ........++|.++....+.+.+|+..+..+++.+..
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            2 2334457899999999999999999999999887754

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.48  Score=46.98  Aligned_cols=276  Identities=14%  Similarity=0.117  Sum_probs=157.7

Q ss_pred             cCcHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhc--CCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 015537          115 SGVVPRFVEFLLRE-------DYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN  185 (405)
Q Consensus       115 ~g~l~~Li~lL~~~-------~~~~~~~~a~~~L~ni~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~n  185 (405)
                      .|+++.+.+.|...       +++.-.+-|++.+.++.+  ..+.-..-+.+.-+++.++..++++.--++..++..++.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            57899999999432       124456777888888766  323334445555677888888888888899999999999


Q ss_pred             hhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCCh-hhhhccHHHHHhhhcCCChHHHHHH
Q 015537          186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF-DQVSPALPALAHLIHSNDDEVLTDA  263 (405)
Q Consensus       186 l~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a  263 (405)
                      +..+   .++..+-..+.+...+.+ ++.+..+...|+-++.-+..+.. .... ..+.+.++.|+.+-+.-+.++...+
T Consensus       487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v  562 (970)
T COG5656         487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV  562 (970)
T ss_pred             HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence            9544   334444445677778888 55788888889999988887751 1111 1223444445555444456666665


Q ss_pred             HHHHH-HhccCC----hhHHHHHHhcCChHHHHHhcCCCC------cchHHHHHHHHhHhhc---C---ChhhHHHHHhc
Q 015537          264 CWALS-YLSDGT----NDKIQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVT---G---DDMQTQCVIEY  326 (405)
Q Consensus       264 ~~~l~-~l~~~~----~~~~~~~~~~~~l~~L~~lL~~~~------~~v~~~a~~~l~nl~~---~---~~~~~~~~~~~  326 (405)
                      ...+. +.++.-    ++....+++ ..+.....++..++      ++-+..|..+|..+.+   +   .+...+ -+..
T Consensus       563 Me~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~le~  640 (970)
T COG5656         563 MESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YLEV  640 (970)
T ss_pred             HHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HHHH
Confidence            55433 333221    122221111 12233334443321      1234445555444332   1   122222 1334


Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       327 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      .+.|.+--++.+. ....=.+|+-.+-+.+-...+ +.. +.-|+.+.+.+++.+..+.    .--.++.-|+.||.
T Consensus       641 slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~p-imwgi~Ell~~~l~~~~t~----~y~ee~~~al~nfi  710 (970)
T COG5656         641 SLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEP-IMWGIFELLLNLLIDEITA----VYSEEVADALDNFI  710 (970)
T ss_pred             HHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhh-hhhHHHHHHHhcccccchh----hhHHHHHHHHHHHH
Confidence            5777777777777 778888888888887654333 221 1235555555555443321    23467777777763

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.18  E-value=0.097  Score=45.62  Aligned_cols=101  Identities=14%  Similarity=0.101  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHh
Q 015537           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (405)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~l  167 (405)
                      .....|+..|.-++-.+ .+....+.....+..|+++|.....+.++..++.+|..+.-+++.+.+.+-+.+++..++.+
T Consensus       106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            34555777777665554 45555666788999999999665558999999999999999999999999999999999999


Q ss_pred             hCC--CCHHHHHHHHHHHHHhhCC
Q 015537          168 LYS--PSDDVREQAVWALGNIAGD  189 (405)
Q Consensus       168 L~~--~~~~i~~~a~~~L~nl~~~  189 (405)
                      +++  .+.+++-.++..|.-+..+
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHcc
Confidence            987  4677877777777766544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.17  E-value=0.13  Score=50.00  Aligned_cols=123  Identities=16%  Similarity=0.176  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHh
Q 015537          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH  250 (405)
Q Consensus       171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~  250 (405)
                      .+...+..|...|.....+-|..++.     ++..+++++ .+.|..|+..++..|..+|.+.+    ..+..+..+|++
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Q  103 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQ  103 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHH
Confidence            47889999999999999998877655     577899999 88899999999999999999843    344678889999


Q ss_pred             hhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC---CCCcchHHHHHHHHhH
Q 015537          251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---HPSPSVLIPALRTVGN  311 (405)
Q Consensus       251 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~l~n  311 (405)
                      +|.++|+.....+=++|..+...++..        .+..+...+.   ..+..++..++..|..
T Consensus       104 lL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen  104 LLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            999999887777777777776544432        1233333332   4566778877776643

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.17  E-value=0.29  Score=48.12  Aligned_cols=259  Identities=13%  Similarity=0.121  Sum_probs=163.2

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~  155 (405)
                      -.++..+...+.+.+..-..-|.+.+    ...-+.++...++|.|+..+..++...-....+.-++..... .+     
T Consensus       257 ~~fLeel~lks~~eK~~Ff~~L~~~l----~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e-----  326 (690)
T KOG1243|consen  257 LLFLEELRLKSVEEKQKFFSGLIDRL----DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE-----  326 (690)
T ss_pred             HHHHHhcccCcHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----
Confidence            34455555556666655555555533    222345666677788777776554112222223333333333 22     


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC
Q 015537          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (405)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  235 (405)
                      .+.+++|.|++++.+++..+|-..+.-+-+....   ..+.+++..+++.+..-+ .+++..++...+.++..|+..-..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence            5568999999999999999997776666665543   334556667888888888 889999999999999988865322


Q ss_pred             CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC
Q 015537          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (405)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~  315 (405)
                      .  ......+.++..+-.++++.++.+..-+++.++.......   .+.-....+..-+.++-..-+..+++.+......
T Consensus       403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~  477 (690)
T KOG1243|consen  403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEY  477 (690)
T ss_pred             h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence            2  2223455666666555678899999989988876532211   2222233444456666667777777777554432


Q ss_pred             ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       316 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      -+   +.-+...++|.+..+..++ +..+|..|.-++...-.
T Consensus       478 ~~---~~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  478 FD---QSEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             cc---hhhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence            22   2234557888888888888 88888888777766543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.15  E-value=0.05  Score=44.21  Aligned_cols=147  Identities=12%  Similarity=0.060  Sum_probs=90.3

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (405)
                      ..++.|+.+|+.+.++.+|.+++++||.|..-+|...+.+...  .+.-  .-...+........... ++....    +
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~--~~~~~~~~~~~~~l~~~-~~~~~~----e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSK--SSENSNDESTDISLPMM-GISPSS----E   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCcc--ccccccccchhhHHhhc-cCCCch----H
Confidence            3578889999887769999999999999988766554422221  1100  00111112222222111 111111    2


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (405)
                      ...-..++..|+..|.+..-..-...++.++.++..............++|.++..+.+.++..++..++-|+.|.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2333346778888884444455556677777777765544557777899999999998777788888777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.11  E-value=0.02  Score=46.44  Aligned_cols=148  Identities=18%  Similarity=0.124  Sum_probs=100.7

Q ss_pred             ChHHHHHhhhC-CCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHH
Q 015537          202 GLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA  280 (405)
Q Consensus       202 ~i~~L~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~  280 (405)
                      .+..++..|.. ...++++..++-++..+-..   ........+-+++..++...+.+-...++.++..+-...++....
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            35566666644 56778888888888877411   111122334455556666655667788888888888888876666


Q ss_pred             HH-hcCChHHHHHhcC--CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchh-HHHHHHHHHHH
Q 015537          281 VI-EAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS-IKKEACWTVSN  354 (405)
Q Consensus       281 ~~-~~~~l~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~-v~~~a~~~L~n  354 (405)
                      ++ ..|+++.++.+..  ..+..++..++.+|..-| .+...+. .+...+++.|..++..+++.. +|..|+-+|+-
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            65 4589999999998  778888999999886544 3444444 455578999999996553566 88888777753

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.41  Score=47.35  Aligned_cols=158  Identities=20%  Similarity=0.125  Sum_probs=101.9

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh
Q 015537          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF  238 (405)
Q Consensus       159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  238 (405)
                      ++=+.+-.++.+.+|-++...+.+++---....       ..+++..|+..--++.+.+|++.|+-+|.-++..+|    
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp----  587 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP----  587 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh----
Confidence            445556667777788888777776654221111       234566677774477889999999999998887765    


Q ss_pred             hhhhccHHHHHhhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537          239 DQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (405)
Q Consensus       239 ~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  317 (405)
                          ..+|..+.+|. +-++.|+..++.+|+-.|.+......       +..|=.+..++..-||..|+-+++.|.....
T Consensus       588 ----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA-------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t  656 (929)
T KOG2062|consen  588 ----EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA-------INLLEPLTSDPVDFVRQGALIALAMIMIQQT  656 (929)
T ss_pred             ----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH-------HHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence                34555566664 45899999999999988776543321       2344444556667789999999988875332


Q ss_pred             hhHHHHHhcCchHHHHHhhcCC
Q 015537          318 MQTQCVIEYQALPCLLNLLSGN  339 (405)
Q Consensus       318 ~~~~~~~~~g~l~~L~~ll~~~  339 (405)
                      ++...- -.++...+.+++.+.
T Consensus       657 ~~~~pk-v~~frk~l~kvI~dK  677 (929)
T KOG2062|consen  657 EQLCPK-VNGFRKQLEKVINDK  677 (929)
T ss_pred             cccCch-HHHHHHHHHHHhhhh
Confidence            221111 124566677777665

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.05  E-value=2.1  Score=44.03  Aligned_cols=238  Identities=18%  Similarity=0.191  Sum_probs=140.6

Q ss_pred             hcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC----CCC----HHHHHHHHH
Q 015537          114 RSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY----SPS----DDVREQAVW  181 (405)
Q Consensus       114 ~~g~l~~Li~lL~~~~----~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~----~~~----~~i~~~a~~  181 (405)
                      +.|++..+++++.+-.    ...+-...+..|...+.- +.+|+.+++.|+++.|+..|.    ...    +.+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            4688988988887532    134455556666666655 899999999999999999885    333    678888887


Q ss_pred             HHHHhhCCChhhHH----HHHh--------cCChHHHHHhhhCC---CchhHHHHHHHHHHHhhcCCCCCChhhhhccHH
Q 015537          182 ALGNIAGDSPRCRD----LVLS--------QGGLVPLLAQLNGQ---PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP  246 (405)
Q Consensus       182 ~L~nl~~~~~~~~~----~i~~--------~~~i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  246 (405)
                      ++--+..+.....-    ....        ...+..+++.+...   .++.+....+..|-+|+.+.+......+..+-|
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p  273 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP  273 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence            77777643221000    0001        11256666666322   368899999999999999864333322222323


Q ss_pred             HHHhhh-----cCCChHHHHHHHHHHHHhccC---C---hhHHHHHHhcCChHHHHHhcCCCC--------c--------
Q 015537          247 ALAHLI-----HSNDDEVLTDACWALSYLSDG---T---NDKIQAVIEAGVFPRLAEFLMHPS--------P--------  299 (405)
Q Consensus       247 ~L~~ll-----~~~d~~v~~~a~~~l~~l~~~---~---~~~~~~~~~~~~l~~L~~lL~~~~--------~--------  299 (405)
                      .+ .+=     +..+..+.   +.+++.++.+   +   ....+.+++.|++...+..|...-        +        
T Consensus       274 ~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~  349 (802)
T PF13764_consen  274 YL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR  349 (802)
T ss_pred             hc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence            22 111     11223333   3333444322   2   245677899999998888874221        1        


Q ss_pred             chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       300 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      .-...+++.|.-++.+... ++..+..++++.+..+=..+.+..|=.-|--+|-.+..
T Consensus       350 psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  350 PSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             CcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            1234577888888876553 44457777886665555544344444444455555543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.02  E-value=0.18  Score=49.08  Aligned_cols=129  Identities=19%  Similarity=0.155  Sum_probs=83.9

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537          120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (405)
Q Consensus       120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~  199 (405)
                      .++...+ ++ +..+.-|+..|......-|+...     .++..++.|..+++..|+.+|+..|..+|.+.++....   
T Consensus        27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k---   96 (556)
T PF05918_consen   27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK---   96 (556)
T ss_dssp             HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred             HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence            3344444 34 78888899999888888777665     35678899999999999999999999999988765444   


Q ss_pred             cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc---CCChHHHHHHHHHHH
Q 015537          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALS  268 (405)
Q Consensus       200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~l~  268 (405)
                        +.+.|+.+| ...++.-...+-++|..|...+|       .+.+..+...+.   +.|+.++..++..|.
T Consensus        97 --vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   97 --VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             --HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             --HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence              456788888 67777777777777777766543       344444444443   467778888777664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.00  E-value=0.22  Score=43.22  Aligned_cols=186  Identities=14%  Similarity=0.139  Sum_probs=121.3

Q ss_pred             ChHHHHHHHHHHHHhhccCCCCchHHHH--hcCcHHHHHHHhcC-------CC-CH---HHHHHHHHHHHHHhcCCchhH
Q 015537           86 DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLR-------ED-YP---QLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~l~~Li~lL~~-------~~-~~---~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +++.+..|+..|.+--..  .+....++  .-|.+..|++=+-+       +. .+   .-...|+..|.-+|++ ++.|
T Consensus         8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr   84 (262)
T PF04078_consen    8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETR   84 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred             CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHH
Confidence            678899999998876432  34443322  45777777553322       11 11   2234555566667776 9999


Q ss_pred             HHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537          153 KVVIDHGAVPIFVKLLYSP-----SDDVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~-----~~~i~~~a~~~L~nl~~-~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l  226 (405)
                      ..+++..+.-+|..+|+..     .+.++-.+++++|.+.. ++++.-..+...++++..++.+ ..+++-.+..|++.+
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl  163 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL  163 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred             HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence            9999999888888888653     36688999999999985 4566777888999999999999 556777788888888


Q ss_pred             HHhhcCCC--------CCChhhhhccHHHH-HhhhcCCChHHHHHHHHHHHHhccCCh
Q 015537          227 SNFCRGKP--------QPPFDQVSPALPAL-AHLIHSNDDEVLTDACWALSYLSDGTN  275 (405)
Q Consensus       227 ~~l~~~~~--------~~~~~~~~~~l~~L-~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (405)
                      ..+-.++.        ...+..+..++..+ ..+....++.+...++++-..|+++..
T Consensus       164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            77665531        11122223444333 334456788899999999999987654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.87  E-value=0.042  Score=37.74  Aligned_cols=66  Identities=21%  Similarity=0.313  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 015537          134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG  201 (405)
Q Consensus       134 ~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~  201 (405)
                      ...|+|+++++++. +.....+.+.++++.++++... +...+|-.|.++|+-++.... ..+.+.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence            46799999999886 5666666677999999999875 678999999999999986654 445554443

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.85  E-value=0.67  Score=44.10  Aligned_cols=234  Identities=13%  Similarity=0.078  Sum_probs=138.3

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                      .++...+..|+.++.++|+.-|+....+|.++.+.-...|..+.. .+...+.+.+.......-...++..+..+..+..
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            344456788999999999999999999999987665556555543 2556677777666677778888889999988864


Q ss_pred             CCC-hhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          235 QPP-FDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       235 ~~~-~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                      .+. .....-....++.|.++.. ...-.....++..+...++.....++     ..++..--..+..=...-+.-+..+
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~WP~t~s~Kev~FL~el~~i  282 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHWPKTNSQKEVLFLNELEEI  282 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCchhHHHHHHHHHHH
Confidence            333 3333334456677766654 44456666666666666665544332     4445544344444444556666666


Q ss_pred             hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhcccccchhh
Q 015537          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH---VHAFSIIVAFFFMFLHFFFGA  389 (405)
Q Consensus       313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~lL~~~~~~~~~~  389 (405)
                      ...-+...-.-+...+...+...+.++ +..|.+.|+..+.|=     . +..++.   ..++|.+...|......-=..
T Consensus       283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~-~~~li~~~~~~i~p~i~~~L~~~~~~HWn~  355 (409)
T PF01603_consen  283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----Y-FLSLISQNSRVILPIIFPALYRNSKNHWNQ  355 (409)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----H-HHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----H-HHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence            654432222222335677888888888 889988887665432     2 233333   236777777765422210123


Q ss_pred             hHHHHHHHHHhh
Q 015537          390 IIYKLAIWLCLV  401 (405)
Q Consensus       390 ~vr~~A~~al~n  401 (405)
                      .||..|.-++.-
T Consensus       356 ~Vr~~a~~vl~~  367 (409)
T PF01603_consen  356 TVRNLAQNVLKI  367 (409)
T ss_dssp             THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            588877766643

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.82  E-value=0.48  Score=44.42  Aligned_cols=207  Identities=16%  Similarity=0.182  Sum_probs=127.0

Q ss_pred             HHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH---HhhcCC--CCCCh-hhhhccHHHHHhh
Q 015537          178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS---NFCRGK--PQPPF-DQVSPALPALAHL  251 (405)
Q Consensus       178 ~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~---~l~~~~--~~~~~-~~~~~~l~~L~~l  251 (405)
                      .|+..|-.+....+..-..+...+++..+++.+.        ..+..++.   +-..+.  +.... ....      ..-
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~--------~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~   68 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQ--------YEVDFALEENKNEEAGSGIPPEYKESSVD------GYS   68 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHH--------HHHHHHHhcccccCCCCCCCCCccccccc------ccc
Confidence            4566666776666666677888999999999982        12222222   111111  11110 0000      000


Q ss_pred             hcCCChHHHHHHHHHHHHhcc---CChhHHHHHHh-cCChHHHHHhcCCCC---cchHHHHHHHHhHhhcCChhhHHHHH
Q 015537          252 IHSNDDEVLTDACWALSYLSD---GTNDKIQAVIE-AGVFPRLAEFLMHPS---PSVLIPALRTVGNIVTGDDMQTQCVI  324 (405)
Q Consensus       252 l~~~d~~v~~~a~~~l~~l~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~---~~v~~~a~~~l~nl~~~~~~~~~~~~  324 (405)
                      +...........+..+..+..   +..+....+++ ..++..|..++.+..   +.+...|+.++..+...++.....+.
T Consensus        69 i~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~  148 (379)
T PF06025_consen   69 ISYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQ  148 (379)
T ss_pred             cCHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHH
Confidence            000112233444444554444   34445555666 556667777777654   57888999999999999998888899


Q ss_pred             hcCchHHHHHhhc-CC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHH-HHHHHHh
Q 015537          325 EYQALPCLLNLLS-GN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYK-LAIWLCL  400 (405)
Q Consensus       325 ~~g~l~~L~~ll~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~-~A~~al~  400 (405)
                      +.|+.+.+++.+. ..  +..++-...--+|+.||-+ ..-.+.+.+.+.++.+++++.+...-.   ..++ +.+-.||
T Consensus       149 e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~~~~---~l~~~d~a~~lG  224 (379)
T PF06025_consen  149 EAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPDYVK---ALRRRDTASNLG  224 (379)
T ss_pred             HcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHHHHH---HhcccchHHHHH
Confidence            9999999999998 43  2344555555667777655 445788889999999999998765441   2222 5555666


Q ss_pred             hh
Q 015537          401 VT  402 (405)
Q Consensus       401 n~  402 (405)
                      +.
T Consensus       225 ~~  226 (379)
T PF06025_consen  225 NS  226 (379)
T ss_pred             HH
Confidence            54

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.72  E-value=0.83  Score=40.65  Aligned_cols=228  Identities=12%  Similarity=0.115  Sum_probs=146.8

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHhhhCCC-chhHHHHHHHHHHHh
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQP-KLSMLRNATWTLSNF  229 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~L~~~l~~~~-~~~~~~~a~~~l~~l  229 (405)
                      ..+.++|.+..|+..+..-+-+-+..++.+..|+-......+....+.  .-.+.+-.++.... .+++.-.+...+...
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc  152 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC  152 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            346677999999999988777777788888888764322222211110  01223333332323 366666666666666


Q ss_pred             hcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCC----hHHHHHhcCCCCcchHHHH
Q 015537          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPA  305 (405)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~v~~~a  305 (405)
                      .++..-........-+......++.+.-++..+|..+...+.......+..++..+.    .+.--.++.+.+.-.+..+
T Consensus       153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs  232 (342)
T KOG1566|consen  153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS  232 (342)
T ss_pred             HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence            665432233333555566666777777889999999998876555444444554433    2335567788899999999


Q ss_pred             HHHHhHhhcCCh---hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHh
Q 015537          306 LRTVGNIVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQVIMHVHAFSIIVAFFF  380 (405)
Q Consensus       306 ~~~l~nl~~~~~---~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~lL~  380 (405)
                      +..+|.+..+..   .-++++-...-+..++.+|..+ ...++-+|..+..-..++  .++-+..++.. =-+.|++++.
T Consensus       233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAnpnK~q~V~~IL~~-Nr~KLl~~l~  310 (342)
T KOG1566|consen  233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVANPNKPQPVRDILVR-NRPKLLELLH  310 (342)
T ss_pred             HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcCCCCCchHHHHHHh-CcHHHHHHHH
Confidence            999999986554   3455666667899999999999 999999999888888773  33334444321 1355666665


Q ss_pred             cc
Q 015537          381 MF  382 (405)
Q Consensus       381 ~~  382 (405)
                      ..
T Consensus       311 ~f  312 (342)
T KOG1566|consen  311 DF  312 (342)
T ss_pred             Hh
Confidence            44

>PRK14707 hypothetical protein; Provisional

Probab=95.66  E-value=4.4  Score=45.47  Aligned_cols=319  Identities=14%  Similarity=0.046  Sum_probs=175.6

Q ss_pred             CHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +|..+++.+.. .+...-..|+..|...+..+ ......+-..|+-..|-.+-+-++.+.....+.++-..++.+ +..+
T Consensus       206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~  283 (2710)
T PRK14707        206 GVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGLR  283 (2710)
T ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHH
Confidence            45556665543 44444445555555555443 333444444555555555555566445555555555556644 5655


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH-Hhhc
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-NFCR  231 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~-~l~~  231 (405)
                      +.+-..+.-..|-.+-+-++..+...+...|..=..+++..+..+ +.-.+...++-|.+.++..+-+.++.+|. .|+.
T Consensus       284 ~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~  362 (2710)
T PRK14707        284 KALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVA  362 (2710)
T ss_pred             HhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence            555444433333333344777777777777766555666555443 33356667777778887776666666665 4554


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      ...........++-..|..+-+-+|..+...+..+|..=..++.+..+.+-..|+-..|-.+-+=++..+...+...|.-
T Consensus       363 d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~  442 (2710)
T PRK14707        363 DPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAG  442 (2710)
T ss_pred             CHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHH
Confidence            43222222234455556666666887777777777776554566655544444555555555556777888888888877


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhH
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAII  391 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~v  391 (405)
                      -+..+.+..+.+--.++...|-.+-+-+ +..+..+++-.|.-=....++..+.+ +..-+..-++-|+...+.   +.-
T Consensus       443 ~la~d~~l~~~~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~a~-~~q~~~~~L~aLSK~Pd~---~~c  517 (2710)
T PRK14707        443 RLAHDTELCKALDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRLRKAL-KPQEVVIALHSLSKWPDT---PIC  517 (2710)
T ss_pred             HHhccHHHHhhcChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHhhc-CHHHHHHHHHHhhcCCCc---HHH
Confidence            7766665544333333333333333344 77777766666555545556644433 322233333445444333   344


Q ss_pred             HHHHHHHHh
Q 015537          392 YKLAIWLCL  400 (405)
Q Consensus       392 r~~A~~al~  400 (405)
                      .+.+.|..+
T Consensus       518 ~~A~~~lA~  526 (2710)
T PRK14707        518 AEAASALAE  526 (2710)
T ss_pred             HHHHHHHHH
Confidence            455555443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=95.62  E-value=0.91  Score=45.97  Aligned_cols=238  Identities=16%  Similarity=0.106  Sum_probs=128.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhc--cCCCCchHHHHhcC---cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLS--IERSPPIEEVIRSG---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s--~~~~~~~~~~~~~g---~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~  149 (405)
                      +-.|+..+..-+.+........+..-..  .......+.+...|   .+..+.+++.+..  .--.+|++.|..+.....
T Consensus       349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~  426 (618)
T PF01347_consen  349 FSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKK--LTDDEAAQLLASLPFHVR  426 (618)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcC
Confidence            5666666666555444433332221100  00011123333444   4566677777644  223445555666555422


Q ss_pred             hhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChh---------hHHHHHhcCChHHHHHhhh---CC
Q 015537          150 EHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPR---------CRDLVLSQGGLVPLLAQLN---GQ  213 (405)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~~~~~---------~~~~i~~~~~i~~L~~~l~---~~  213 (405)
                      .-..     ..+..+..++.+    .++.+...|+-+++.+....-.         ..........++.+...+.   ..
T Consensus       427 ~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  501 (618)
T PF01347_consen  427 RPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR  501 (618)
T ss_dssp             ---H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT
T ss_pred             CCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc
Confidence            2222     235566666665    4677888888888888632110         0111222345677777764   34


Q ss_pred             CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC---ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHH
Q 015537          214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (405)
Q Consensus       214 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L  290 (405)
                      .+..-+..++.+|.|+-..          ..++.+..++...   ...++..|+|++..++...++.+.        +.+
T Consensus       502 ~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~--------~~l  563 (618)
T PF01347_consen  502 GDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR--------EIL  563 (618)
T ss_dssp             T-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH--------HHH
T ss_pred             cCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH--------HHH
Confidence            5678888999999999543          5788888888766   588999999999999877765544        666


Q ss_pred             HHhcCC--CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537          291 AEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (405)
Q Consensus       291 ~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~  347 (405)
                      .+++.+  .+.++|..|+.+|-.  + ++..       ..+..+...+...++..|...
T Consensus       564 ~~I~~n~~e~~EvRiaA~~~lm~--~-~P~~-------~~l~~i~~~l~~E~~~QV~sf  612 (618)
T PF01347_consen  564 LPIFMNTTEDPEVRIAAYLILMR--C-NPSP-------SVLQRIAQSLWNEPSNQVASF  612 (618)
T ss_dssp             HHHHH-TTS-HHHHHHHHHHHHH--T----H-------HHHHHHHHHHTT-S-HHHHHH
T ss_pred             HHHhcCCCCChhHHHHHHHHHHh--c-CCCH-------HHHHHHHHHHhhCchHHHHHH
Confidence            777643  356788888766633  2 2222       235556777766645555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.48  E-value=0.43  Score=48.88  Aligned_cols=189  Identities=14%  Similarity=0.057  Sum_probs=132.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD  239 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~  239 (405)
                      +.+.+..-+.+++..-+-.++..+.-+..... .....-..|.+..++.....+.+..+...++.+|..++..-......
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~  332 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK  332 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence            33445555566777777788887777765544 11111123345566666667889999999999999999887555556


Q ss_pred             hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh-
Q 015537          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-  318 (405)
Q Consensus       240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-  318 (405)
                      .....+|.++.-+....+.++..+..++-.++.....       ....+.+...+.+.++.++..+...++......+. 
T Consensus       333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            6678888898888887787777777766665542211       12457888999999999999988888887765541 


Q ss_pred             hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       319 ~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      ....---.++++.++....+. +..||+.|.-+++-+..
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            111111235788888888888 99999999998888865

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=95.43  E-value=0.22  Score=49.07  Aligned_cols=212  Identities=13%  Similarity=0.110  Sum_probs=124.8

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                      +....++|.|+..|.  +..++-..+-.+..|+...+   ........++.|...++......+......=+.-|.+.  
T Consensus       308 v~~~kiLP~L~~el~--n~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~K--  380 (700)
T KOG2137|consen  308 VLFQKILPTLVAELV--NTKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEK--  380 (700)
T ss_pred             HHHHhhhhHHHHHhc--cccccccccchhhhhhhccc---hhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhh--
Confidence            444456677776664  22333333333333433222   11123335566666663322322222222212222221  


Q ss_pred             CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhHhh
Q 015537          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIV  313 (405)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~  313 (405)
                      -........++|.|..-+++.+..++..++..+..+++.-+.   ..+..-++|.+..+- .+.+..++..++-+++.++
T Consensus       381 t~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~  457 (700)
T KOG2137|consen  381 TPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI  457 (700)
T ss_pred             CChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence            233445578899999999999999999999999888765442   256667788887774 5567789999999999998


Q ss_pred             cCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537          314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMF  382 (405)
Q Consensus       314 ~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~  382 (405)
                      ..-|.  -.++  ..+.++....... ++.+......+.-++....+.. ..++...++|.++-+....
T Consensus       458 q~lD~--~~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  458 QRLDK--AAVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             HHHHH--HHhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence            32221  1111  2355566666666 7888877777777776543332 4555678888888776544

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.40  E-value=2.8  Score=40.67  Aligned_cols=283  Identities=13%  Similarity=0.070  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHh
Q 015537           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (405)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~l  167 (405)
                      ..+..|+..++..+..-+-.++..+     -..--+++.....++.|..+...|..+......... ...    ..+...
T Consensus         5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~   74 (464)
T PF11864_consen    5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRD   74 (464)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHH
Confidence            4566667667666544322222222     222345566555577888888888888876433111 111    122222


Q ss_pred             hC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC--------------------------CchhHHH
Q 015537          168 LY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ--------------------------PKLSMLR  220 (405)
Q Consensus       168 L~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~--------------------------~~~~~~~  220 (405)
                      +. ...++....-+.+|..|..++....  ..+.+..+.|..-+...                          .+.....
T Consensus        75 I~~~~~~~d~~~~l~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~  152 (464)
T PF11864_consen   75 ISDPSNDDDFDLRLEALIALTDNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS  152 (464)
T ss_pred             HhcCCCchhHHHHHHHHHHHHcCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence            23 3455556667777778877766552  23555666665555110                          1233445


Q ss_pred             HHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhc-CCChHHHHHHHHHHHHhccC---ChhHHHHHHhcCChHHHHHhcC
Q 015537          221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLM  295 (405)
Q Consensus       221 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~  295 (405)
                      .....+.++...+ .......+.+++..+..+.. +.++.....++..+-.+...   +.+.         ++.++..|.
T Consensus       153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s---------l~~~i~vLC  223 (464)
T PF11864_consen  153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES---------LSPCIEVLC  223 (464)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH---------HHHHHHHHh
Confidence            5555666666655 33444555666666555543 23343444444444333221   2222         223333332


Q ss_pred             --CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015537          296 --HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQIQVIMH  368 (405)
Q Consensus       296 --~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  368 (405)
                        .+..+....+-.++.|++...-.+       ..+..|..+|.++     .+..+-+.|...+..+..+..++...-+.
T Consensus       224 si~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~  296 (464)
T PF11864_consen  224 SIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP  296 (464)
T ss_pred             hHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence              223366777888888888543222       2356677888322     14566678888888887765332222222


Q ss_pred             -h--CcHHHHHHHHhcccccchhhhHHHHHHHHH
Q 015537          369 -V--HAFSIIVAFFFMFLHFFFGAIIYKLAIWLC  399 (405)
Q Consensus       369 -~--~~i~~L~~lL~~~~~~~~~~~vr~~A~~al  399 (405)
                       .  -++|.|...++..... ..++|-....-++
T Consensus       297 ~~~~~vl~sl~~al~~~~~~-v~~eIl~~i~~ll  329 (464)
T PF11864_consen  297 FSPSSVLPSLLNALKSNSPR-VDYEILLLINRLL  329 (464)
T ss_pred             ccHHHHHHHHHHHHhCCCCe-ehHHHHHHHHHHH
Confidence             2  2677777777755333 2334444333333

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.37  E-value=0.52  Score=39.02  Aligned_cols=141  Identities=18%  Similarity=0.159  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHhcC-Cchh----HHHHH------hCCC-hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 015537          133 LQFEAAWALTNIASG-TSEH----TKVVI------DHGA-VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (405)
Q Consensus       133 ~~~~a~~~L~ni~~~-~~~~----~~~~~------~~g~-i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~  200 (405)
                      +|..|+.+|..++.. ++..    ...++      ..+. .+.+.-++.++++.++..|+.++..|..++..+-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566777777777765 2211    01111      1122 3444456678899999999999999986654332222211


Q ss_pred             C-------------------ChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC--ChhhhhccHHHHHhhhcCCChHH
Q 015537          201 G-------------------GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP--PFDQVSPALPALAHLIHSNDDEV  259 (405)
Q Consensus       201 ~-------------------~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~d~~v  259 (405)
                      +                   ....|+..+....+..+...++.++..|....|-.  .......++..+..++.+.|+++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   12345555656778889999999999999987533  33444666677777888999999


Q ss_pred             HHHHHHHHHHhccC
Q 015537          260 LTDACWALSYLSDG  273 (405)
Q Consensus       260 ~~~a~~~l~~l~~~  273 (405)
                      +..++.+++.+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999888654

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.30  E-value=0.22  Score=53.06  Aligned_cols=162  Identities=15%  Similarity=0.083  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCc
Q 015537          220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP  299 (405)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  299 (405)
                      .++.|+...++...+  -.....+.+..++..+..+...++..|+.||+.+...++..   +....+-..+..-+.+...
T Consensus       795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa  869 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA  869 (1692)
T ss_pred             hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence            445555555544321  11223577788888888888999999999999999877643   2222334455555666788


Q ss_pred             chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF  379 (405)
Q Consensus       300 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL  379 (405)
                      .|+.+|+..+|..+...++.....     .+.+..-+.+. .-.||+.+..++.-+|...|+. .     .+...+.++|
T Consensus       870 sVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf-~-----~i~~~cakml  937 (1692)
T KOG1020|consen  870 SVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDT-GVSVRKRVIKILRDICEETPDF-S-----KIVDMCAKML  937 (1692)
T ss_pred             HHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh-h-----hHHHHHHHHH
Confidence            999999999999988777655533     44566666666 7889999999999999866552 1     1223344455


Q ss_pred             hcccccchhhhHHHHHHHHHh
Q 015537          380 FMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       380 ~~~~~~~~~~~vr~~A~~al~  400 (405)
                      ..-.++  |..|++-++-.+-
T Consensus       938 rRv~DE--Eg~I~kLv~etf~  956 (1692)
T KOG1020|consen  938 RRVNDE--EGNIKKLVRETFL  956 (1692)
T ss_pred             HHhccc--hhHHHHHHHHHHH
Confidence            444444  3346665554443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=95.29  E-value=0.22  Score=49.84  Aligned_cols=138  Identities=16%  Similarity=0.173  Sum_probs=83.9

Q ss_pred             ccHHHHHhhhcCC----ChHHHHHHHHHHHHhccC---ChhHHHHHHhcCChHHHHHhc----CCCCcchHHHHHHHHhH
Q 015537          243 PALPALAHLIHSN----DDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFL----MHPSPSVLIPALRTVGN  311 (405)
Q Consensus       243 ~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL----~~~~~~v~~~a~~~l~n  311 (405)
                      ..+..+..+++++    .+.+...++.+++.+...   +.......+-..+++.+...|    +..+...+..++++|||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            4556666776653    456777777777776532   111100111123455555555    33455567789999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHhhc-C-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhh
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNLLS-G-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGA  389 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~ll~-~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~  389 (405)
                      +....           .++.+..++. . ..+..+|..|.|+|.+++...+..++        +.|+.++.+...   ++
T Consensus       473 ~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e---~~  530 (574)
T smart00638      473 AGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAE---PP  530 (574)
T ss_pred             cCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCC---Ch
Confidence            86422           2344455554 1 22568999999999999866665444        345666654433   46


Q ss_pred             hHHHHHHHHHhhh
Q 015537          390 IIYKLAIWLCLVT  402 (405)
Q Consensus       390 ~vr~~A~~al~n~  402 (405)
                      +||-.|..+|..+
T Consensus       531 EvRiaA~~~lm~t  543 (574)
T smart00638      531 EVRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHHHhc
Confidence            8999999988754

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.19  E-value=0.063  Score=52.53  Aligned_cols=183  Identities=16%  Similarity=0.180  Sum_probs=130.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+|.+++++.+.|..++..-+..+-++.    ..-.+.+++..++|.+..-+.+.+ +.++++++.++..++..-.+.  
T Consensus       331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~~~--  403 (690)
T KOG1243|consen  331 IIPVLLKLFKSPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLSKR--  403 (690)
T ss_pred             hhhhHHHHhcCcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhchh--
Confidence            4789999999999999988888887775    344556778889999999998888 899999999999888742221  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                       .+....+..+-.+-.+++..++....-||+.++.+. +..|+.+.    +.+..+-+ .++-...+....+.++..+..
T Consensus       404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL----~~aftral-kdpf~paR~a~v~~l~at~~~  477 (690)
T KOG1243|consen  404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVL----ASAFTRAL-KDPFVPARKAGVLALAATQEY  477 (690)
T ss_pred             -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhcccc----chhhhhhh-cCCCCCchhhhhHHHhhcccc
Confidence             344445666666666677889999999999998763 33333322    23444445 566667788888888776665


Q ss_pred             CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 015537          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (405)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (405)
                      .+  .......++|.+..+.-+.+..++..+..++...-
T Consensus       478 ~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  478 FD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL  514 (690)
T ss_pred             cc--hhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence            33  23333578888888888888888877777665543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=95.17  E-value=0.57  Score=46.35  Aligned_cols=136  Identities=17%  Similarity=0.114  Sum_probs=97.3

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC
Q 015537          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP  236 (405)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~  236 (405)
                      ...++|.|..-+++.+..+++.++..+..++..-+   -.++..-+++.+-++.....+..++.+++-|+..+.+.   .
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---l  460 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---L  460 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---H
Confidence            34678888888888999999999999999985433   12334446777777766788999999999999999843   2


Q ss_pred             ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCc
Q 015537          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP  299 (405)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  299 (405)
                      +...+-..+..+....+..|+.+....+.+...+.....+. ..++...++|.++.+...+.-
T Consensus       461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L  522 (700)
T KOG2137|consen  461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL  522 (700)
T ss_pred             HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence            22222344455556667789999988888887776554443 345566788999988866553

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=95.04  E-value=2.5  Score=47.50  Aligned_cols=273  Identities=12%  Similarity=0.063  Sum_probs=147.2

Q ss_pred             CChHHHHHHHHHHHHhhccC--CCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChH
Q 015537           85 NDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (405)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~  162 (405)
                      .+..+...|+..|++++..-  ..+....-.+..++.+|..++.+....+++...+.|+.++.....    .-+..| =+
T Consensus      1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-Wk 1223 (1780)
T PLN03076       1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-WK 1223 (1780)
T ss_pred             cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-cH
Confidence            45678888888888875421  112112223456788888888766668999999999999866422    233444 33


Q ss_pred             HHHHhh----CCCCHHHHHHHHHHHHHhhCCChhh-----HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh----
Q 015537          163 IFVKLL----YSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF----  229 (405)
Q Consensus       163 ~L~~lL----~~~~~~i~~~a~~~L~nl~~~~~~~-----~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l----  229 (405)
                      .++.++    .+.++.+...|..++..|..+.-..     .+.+.  ..+..+..+-.+..+..+--.++..|+++    
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence            333433    4567889999999998887542110     01111  12334444443333344433444444433    


Q ss_pred             hcCC-C----------------------C------CCh---hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC----
Q 015537          230 CRGK-P----------------------Q------PPF---DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----  273 (405)
Q Consensus       230 ~~~~-~----------------------~------~~~---~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----  273 (405)
                      ..+. .                      .      ...   ...-+++..|..+....+++|+..|+.+|-.+...    
T Consensus      1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076       1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred             HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence            1110 0                      0      000   11122333344456667899999999988776532    


Q ss_pred             -ChhHHHHHHhcCChHHHHHhcCCC------------------C-c----chHHHHHHHHhHhh---cCChhhHHHHHhc
Q 015537          274 -TNDKIQAVIEAGVFPRLAEFLMHP------------------S-P----SVLIPALRTVGNIV---TGDDMQTQCVIEY  326 (405)
Q Consensus       274 -~~~~~~~~~~~~~l~~L~~lL~~~------------------~-~----~v~~~a~~~l~nl~---~~~~~~~~~~~~~  326 (405)
                       +++....++. +++-+++..+++.                  + .    -+...+..+|.+++   ..--.....++ .
T Consensus      1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~ 1459 (1780)
T PLN03076       1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-K 1459 (1780)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence             2334444443 4455555544311                  0 0    02233344444443   22212222222 2


Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-----CHHHHHHHH
Q 015537          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAG-----NREQIQVIM  367 (405)
Q Consensus       327 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~l~  367 (405)
                      +++..|..++..+ +..+.+..+-+|.++...     ++++...++
T Consensus      1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~ 1504 (1780)
T PLN03076       1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVV 1504 (1780)
T ss_pred             HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            5666677777777 888888899999888752     455554443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.04  E-value=0.28  Score=48.29  Aligned_cols=130  Identities=20%  Similarity=0.184  Sum_probs=92.1

Q ss_pred             hhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC
Q 015537          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (405)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~  295 (405)
                      ..+.+.++.++..+-..++  ....+.+.+.+++....+.|..|+-.+|..|..+.+...+ +...+-.++...+..-+.
T Consensus        60 dRIl~fla~fv~sl~q~d~--e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~  136 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDK--EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLK  136 (892)
T ss_pred             HHHHHHHHHHHHhhhccCc--hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHh
Confidence            3455555555555554432  2336678888898888999999999999999999874332 222333466677888888


Q ss_pred             CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       296 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      +..+.|+..|+.+|+.+-. ++..    -+..+...+..+++..+++.||+.|   |+||.
T Consensus       137 Drep~VRiqAv~aLsrlQ~-d~~d----ee~~v~n~l~~liqnDpS~EVRRaa---LsnI~  189 (892)
T KOG2025|consen  137 DREPNVRIQAVLALSRLQG-DPKD----EECPVVNLLKDLIQNDPSDEVRRAA---LSNIS  189 (892)
T ss_pred             ccCchHHHHHHHHHHHHhc-CCCC----CcccHHHHHHHHHhcCCcHHHHHHH---HHhhc
Confidence            8999999999999999862 2111    1224677788999888799999987   55554

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.94  E-value=1.1  Score=41.99  Aligned_cols=143  Identities=13%  Similarity=0.128  Sum_probs=84.3

Q ss_pred             hccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC------CCCcchHHHHHHHHhHhhc
Q 015537          242 SPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       242 ~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~~l~nl~~  314 (405)
                      ..-..++-.-+..+| ..-+..|+..+..|+.........++    ...+..+|.      +.++.-+..|+..++.++.
T Consensus       209 ddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~  284 (370)
T PF08506_consen  209 DDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALAS  284 (370)
T ss_dssp             HSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHB
T ss_pred             cCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHh
Confidence            344445555554444 45677788888888765443332222    123333332      4566788899999999996


Q ss_pred             CChh------------hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537          315 GDDM------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMF  382 (405)
Q Consensus       315 ~~~~------------~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~  382 (405)
                      ....            ....+....++|-|.  -..+..|-+|..|+|.+..+-..-+.  +.+  .+++|.++..|.+.
T Consensus       285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~~~  358 (370)
T PF08506_consen  285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQSS  358 (370)
T ss_dssp             SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTTSS
T ss_pred             hhccccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhCCC
Confidence            5421            223444555666665  12223678999999999999664332  222  35899999999876


Q ss_pred             cccchhhhHHHHHHHHH
Q 015537          383 LHFFFGAIIYKLAIWLC  399 (405)
Q Consensus       383 ~~~~~~~~vr~~A~~al  399 (405)
                      .     +-|+--|+++|
T Consensus       359 ~-----~vv~tyAA~~i  370 (370)
T PF08506_consen  359 S-----YVVHTYAAIAI  370 (370)
T ss_dssp             ------HHHHHHHHHHH
T ss_pred             C-----cchhhhhhhhC
Confidence            3     34888888775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.92  E-value=1.4  Score=41.07  Aligned_cols=248  Identities=16%  Similarity=0.106  Sum_probs=127.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHH-HHHHHHHHhhCCChhhHH
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVRE-QAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~-~a~~~L~nl~~~~~~~~~  195 (405)
                      +..+++=|.++....+|..++--|+.-+.+ ++++..+..+|.+..++..+.. ++..+.. .++.+++-++.+.. .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            566666666555468898888888888886 9999999999999999999954 3332433 33444444555544 334


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh-hhhccHHHHHhhhc---------CCChHHHHHHHH
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIH---------SNDDEVLTDACW  265 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~L~~ll~---------~~d~~v~~~a~~  265 (405)
                      .+...+....++.++.-.....+.....      ..  ...... .....+..+...+.         +....-+..++.
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~--~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall  172 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS--RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL  172 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hh--hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence            4444445555566663000000000000      00  000000 00011111111110         111122233333


Q ss_pred             HHHHhc--------------cCChhHHHHHHhcCChHHHHHhcC----CC-------C-----cchHHHHHHHHhHhhcC
Q 015537          266 ALSYLS--------------DGTNDKIQAVIEAGVFPRLAEFLM----HP-------S-----PSVLIPALRTVGNIVTG  315 (405)
Q Consensus       266 ~l~~l~--------------~~~~~~~~~~~~~~~l~~L~~lL~----~~-------~-----~~v~~~a~~~l~nl~~~  315 (405)
                      ++-.++              ...+...+.+.+.|++..++..+.    ..       +     ......++++|-|.+..
T Consensus       173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~  252 (361)
T PF07814_consen  173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL  252 (361)
T ss_pred             HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence            333331              111222345666788888888874    11       1     12455688888888766


Q ss_pred             ChhhHHHHHhc--Cch-HHHHHhhcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 015537          316 DDMQTQCVIEY--QAL-PCLLNLLSGN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII  375 (405)
Q Consensus       316 ~~~~~~~~~~~--g~l-~~L~~ll~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  375 (405)
                      +.....+++..  +.+ ..+..++...  .-..+...++.++.|++.++|.....+...++...+
T Consensus       253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~  317 (361)
T PF07814_consen  253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQL  317 (361)
T ss_pred             CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccch
Confidence            66544444433  233 2222222222  033445678899999998887776666655444443

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.91  E-value=0.23  Score=47.61  Aligned_cols=152  Identities=22%  Similarity=0.306  Sum_probs=104.4

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 015537          122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (405)
Q Consensus       122 i~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~  200 (405)
                      -+++.+.+ +.++...+..++---.++.       +.|++..|+.. .++.+.+++..|+-+||-+|.+++.        
T Consensus       522 ~ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------  585 (926)
T COG5116         522 NELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------  585 (926)
T ss_pred             HHHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------
Confidence            34555555 7777777776655433322       23678888887 6778999999999999999977653        


Q ss_pred             CChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHH
Q 015537          201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA  280 (405)
Q Consensus       201 ~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~  280 (405)
                       .+...+.+|..+.+..++.-.+.+|.-.|.+...      ..++..|-.++.+...-|+..|+-+++.+.-...+....
T Consensus       586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp  658 (926)
T COG5116         586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP  658 (926)
T ss_pred             -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence             4556777887788999999999999999887521      234556677777888889999999999876443322111


Q ss_pred             HHhcCChHHHHHhcCCC
Q 015537          281 VIEAGVFPRLAEFLMHP  297 (405)
Q Consensus       281 ~~~~~~l~~L~~lL~~~  297 (405)
                      -+ .++...+.+.+...
T Consensus       659 ~v-~~I~k~f~~vI~~K  674 (926)
T COG5116         659 NV-KRIIKKFNRVIVDK  674 (926)
T ss_pred             hH-HHHHHHHHHHHhhh
Confidence            11 14455566665443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.83  E-value=0.42  Score=38.71  Aligned_cols=136  Identities=18%  Similarity=0.114  Sum_probs=92.7

Q ss_pred             CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHH-hcCchHHH
Q 015537          254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCL  332 (405)
Q Consensus       254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~g~l~~L  332 (405)
                      ...++++..+.-++..+.+...+.    ...-+-+.+-.++...+.+-...++.+++.+..+.++....++ ..|+++.+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~~~~~----~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDAAREE----FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL   91 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence            356778888888888875222222    2222335555666666666788899999999988887666555 67899999


Q ss_pred             HHhhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhh-HHHHHHHHHh
Q 015537          333 LNLLS--GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAI-IYKLAIWLCL  400 (405)
Q Consensus       333 ~~ll~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~-vr~~A~~al~  400 (405)
                      ..++.  .. +..+...++-+|+.=| .+.. ....+..++++.|-++++...+.    . +|--|...|+
T Consensus        92 ~~~~~~~~~-~~~~~~~~lell~aAc-~d~~-~r~~I~~~~~~~L~~~~~~~~~~----~~ir~~A~v~L~  155 (157)
T PF11701_consen   92 LPLASRKSK-DRKVQKAALELLSAAC-IDKS-CRTFISKNYVSWLKELYKNSKDD----SEIRVLAAVGLC  155 (157)
T ss_dssp             HHHHH-CTS--HHHHHHHHHHHHHHT-TSHH-HHHCCHHHCHHHHHHHTTTCC-H----H-CHHHHHHHHH
T ss_pred             HHHHhcccC-CHHHHHHHHHHHHHHH-ccHH-HHHHHHHHHHHHHHHHHccccch----HHHHHHHHHHHh
Confidence            99999  55 7777777777666543 4444 56666778889999988665444    3 6777776665

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.79  E-value=1.1  Score=44.44  Aligned_cols=107  Identities=18%  Similarity=0.136  Sum_probs=80.1

Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (405)
Q Consensus       115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (405)
                      .|++..++....+.+ ..+++.++.+|..+.... ..++..+-+++...+..-+.+..+.|+.+|+.+|+.+-++...- 
T Consensus        84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-  160 (892)
T ss_pred             HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence            345666666666666 799999999999988853 34444455577788888888889999999999999997543211 


Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                          +..+...+..++.++++.+|++.++..+.+
T Consensus       161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             ----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence                334667888888899999999988765543

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=94.75  E-value=1.9  Score=43.28  Aligned_cols=237  Identities=17%  Similarity=0.165  Sum_probs=127.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhc-cCCCCchHHHHhcC---cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLS-IERSPPIEEVIRSG---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s-~~~~~~~~~~~~~g---~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~  149 (405)
                      .+-.|++.|..-+.+........+.. .+ .......+.+...|   .+..+.+++.+..-+.  .+|+..+..+...-.
T Consensus       312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~  388 (574)
T smart00638      312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP--LEAAQLLAVLPHTAR  388 (574)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhh
Confidence            45666777766555555444444432 11 00012233444444   4556666676654221  223333333222111


Q ss_pred             hhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHhhh---CCCchhH
Q 015537          150 EHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSM  218 (405)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~L~~~l~---~~~~~~~  218 (405)
                      .-..     ..+..+..++.+    ..+.++..|+-+++++..    +.+.+...+ ....++.+...|.   ...+..-
T Consensus       389 ~Pt~-----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~  462 (574)
T smart00638      389 YPTE-----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEE  462 (574)
T ss_pred             cCCH-----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchh
Confidence            1111     246667777765    356788888888888763    222111111 1224555665553   2345556


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc-C--CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC
Q 015537          219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-S--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (405)
Q Consensus       219 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~  295 (405)
                      +..++.+|.|+-..          ..++.+..++. .  ....++..|+|+|..++...+..++        +.++++..
T Consensus       463 ~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~  524 (574)
T smart00638      463 IQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYL  524 (574)
T ss_pred             eeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHc
Confidence            67778888877654          34555555554 2  2478999999999998876665443        56666664


Q ss_pred             C--CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537          296 H--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (405)
Q Consensus       296 ~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~  347 (405)
                      +  .++++|..|+..|-.  + ++..       ..+..+...+...++..|+..
T Consensus       525 n~~e~~EvRiaA~~~lm~--t-~P~~-------~~l~~ia~~l~~E~~~QV~sf  568 (574)
T smart00638      525 NRAEPPEVRMAAVLVLME--T-KPSV-------ALLQRIAELLNKEPNLQVASF  568 (574)
T ss_pred             CCCCChHHHHHHHHHHHh--c-CCCH-------HHHHHHHHHHhhcCcHHHHHH
Confidence            4  456888888776632  2 2222       235556777766645555443

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.74  E-value=1.4  Score=42.24  Aligned_cols=159  Identities=14%  Similarity=0.118  Sum_probs=113.2

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCC---HHHHHHHHHHHHHHhcCCch
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDY---PQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~---~~~~~~a~~~L~ni~~~~~~  150 (405)
                      ....+.+.+.+++...+..|+..+..+ |.+ .....+++...++..|.+++.++..   .++...++.++..+....- 
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            357888899999999999999888887 433 4567889999999999999988762   3455555555555544321 


Q ss_pred             hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          151 HTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                      .....+...+|.....+.+-  .+..+...|+..|-++...++..++.+.+.--+..|+..+ ...+..+...+...+..
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            11112222333333333322  4667788899999999888887888888888899999999 77788888888888888


Q ss_pred             hhcCCCCC
Q 015537          229 FCRGKPQP  236 (405)
Q Consensus       229 l~~~~~~~  236 (405)
                      +....|..
T Consensus       240 l~~~a~~~  247 (713)
T KOG2999|consen  240 LFRKAPDD  247 (713)
T ss_pred             HHhhCChH
Confidence            87765443

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.71  E-value=2.6  Score=36.66  Aligned_cols=141  Identities=23%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i  197 (405)
                      ++.|+.-+....++..+...+..|..++..+....     .-++..|..+...+.......+...+..+...++..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            45555545444448999999999999999741211     1245666677777777776677777777765544221   


Q ss_pred             HhcCChHHHHHhh---------hCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh-cCCChHHHHHHHHHH
Q 015537          198 LSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWAL  267 (405)
Q Consensus       198 ~~~~~i~~L~~~l---------~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l  267 (405)
                         +.+..++..+         ..+...+.......++..+|...|.    .-..+++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2344444441         1223455666667899999998766    3346777888888 778888999999999


Q ss_pred             HHhccC
Q 015537          268 SYLSDG  273 (405)
Q Consensus       268 ~~l~~~  273 (405)
                      ..++..
T Consensus       147 ~~Lc~~  152 (234)
T PF12530_consen  147 APLCEA  152 (234)
T ss_pred             HHHHHH
Confidence            999843

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=94.69  E-value=0.27  Score=49.73  Aligned_cols=172  Identities=18%  Similarity=0.171  Sum_probs=94.6

Q ss_pred             hHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC----CChHHHHHHHHHHHHhccCChhH-
Q 015537          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDK-  277 (405)
Q Consensus       203 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~~~~~-  277 (405)
                      +..+.+++.. ....-.. +.+.|..+......+..    ..+..+..++++    .++.+...++.+++.+....... 
T Consensus       397 v~~i~~~I~~-~~~~~~e-a~~~l~~l~~~~~~Pt~----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~  470 (618)
T PF01347_consen  397 VKFIKDLIKS-KKLTDDE-AAQLLASLPFHVRRPTE----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS  470 (618)
T ss_dssp             HHHHHHHHHT-T-S-HHH-HHHHHHHHHHT-----H----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHc-CCCCHHH-HHHHHHHHHhhcCCCCH----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence            4455566633 2222222 33344444443222332    344555555553    34667777777777775321111 


Q ss_pred             --------HHHHHhcCChHHHHHhcC----CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC--Cchh
Q 015537          278 --------IQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKS  343 (405)
Q Consensus       278 --------~~~~~~~~~l~~L~~lL~----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~  343 (405)
                              ....+...+++.+...|.    ..+..-+..++++|||+..  +         ..++.|..++...  .+..
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~  539 (618)
T PF01347_consen  471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHF  539 (618)
T ss_dssp             ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HH
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchH
Confidence                    011222345666666654    4566778889999999853  2         3466677766654  3678


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      +|..|.|+|..++...++.+.        +.|+.++.+...   +++||-.|..+|..+
T Consensus       540 ~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e---~~EvRiaA~~~lm~~  587 (618)
T PF01347_consen  540 IRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTE---DPEVRIAAYLILMRC  587 (618)
T ss_dssp             HHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS----HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCC---ChhHHHHHHHHHHhc
Confidence            999999999999777776554        355666655433   368999999888654

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.68  E-value=2.5  Score=36.34  Aligned_cols=196  Identities=12%  Similarity=0.076  Sum_probs=125.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHH-hcCcHHHHHHHhcC-------C----CCHHHHHHHHHHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLR-------E----DYPQLQFEAAWAL  141 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~l~~Li~lL~~-------~----~~~~~~~~a~~~L  141 (405)
                      .+..++-.+.+  +..+..|+..+.+-.... ..-...+. .-|....+.+-.-.       +    ..+.=...|+..|
T Consensus        27 k~~~~i~~l~~--~p~rE~aL~ELskkre~~-~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll  103 (293)
T KOG3036|consen   27 KAYQLILSLVS--PPTREMALLELSKKREPF-PDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL  103 (293)
T ss_pred             chhhHHHHhhC--CchHHHHHHHHHHhccCC-ccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence            45566555543  456666776666553211 11112222 33544444432211       1    1123345666666


Q ss_pred             HHHhcCCchhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCc
Q 015537          142 TNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPK  215 (405)
Q Consensus       142 ~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~  215 (405)
                      --++++ ++.+..+++..+--+|-.+|..     +.+.++-.++++|+.+... +.++-..++..++++..++.+ ..++
T Consensus       104 QcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim-e~GS  181 (293)
T KOG3036|consen  104 QCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM-ESGS  181 (293)
T ss_pred             HHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH-hccc
Confidence            667777 8999999998876666667754     5678999999999999854 455666778889999999999 7777


Q ss_pred             hhHHHHHHHHHHHhhcCCCCC--------ChhhhhccHH-HHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537          216 LSMLRNATWTLSNFCRGKPQP--------PFDQVSPALP-ALAHLIHSNDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~~~--------~~~~~~~~l~-~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (405)
                      +..+..++..+..+-.++..-        .+..+...+. .+.++.+.+++.....++++..+|+++.
T Consensus       182 elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  182 ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            788888888887766654221        1122233343 3344556678999999999999998655

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.65  E-value=0.67  Score=44.74  Aligned_cols=104  Identities=16%  Similarity=0.070  Sum_probs=77.5

Q ss_pred             CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 015537          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQ  362 (405)
Q Consensus       285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~  362 (405)
                      |++..++.-+.+++..|+..++.+|+-++..-.+ ++..+-.|+++.|..-+-+. .+.||.+|..+|+.+-.  ++++.
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence            6677888888999999999999999888754333 33455568888888888787 89999999999999964  34442


Q ss_pred             HHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537          363 IQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       363 ~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n  401 (405)
                             .+...|..++..+...    .||+.|..-|.+
T Consensus       169 -------~~~n~l~~~vqnDPS~----EVRr~allni~v  196 (885)
T COG5218         169 -------RIVNLLKDIVQNDPSD----EVRRLALLNISV  196 (885)
T ss_pred             -------HHHHHHHHHHhcCcHH----HHHHHHHHHeee
Confidence                   3344677777666444    799988776654

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=94.63  E-value=4.7  Score=39.18  Aligned_cols=249  Identities=15%  Similarity=0.138  Sum_probs=133.4

Q ss_pred             ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcH-HHHHHHhcCCCCH---HHHHHHHHHHHHHhcCCchhHHHHHhCCCh
Q 015537           86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV-PRFVEFLLREDYP---QLQFEAAWALTNIASGTSEHTKVVIDHGAV  161 (405)
Q Consensus        86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l-~~Li~lL~~~~~~---~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i  161 (405)
                      ..+.+..++..+..+.... ...      .+.. ..+...+.....+   ..+.+|+.+|+   .+..+.  ...+.++.
T Consensus        42 p~e~R~~~~~ll~~~i~~~-~~~------~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT---~~Grdi--~~~~~~i~  109 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQ-DSS------SGLMRAEFFRDISDPSNDDDFDLRLEALIALT---DNGRDI--DFFEYEIG  109 (464)
T ss_pred             CHHHHHHHHHHHHHHHHcc-ccc------cHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH---cCCcCc--hhcccchH
Confidence            3567787888887776554 221      1111 2233334433223   34555555554   443333  23455677


Q ss_pred             HHHHHhhCC---------------------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC
Q 015537          162 PIFVKLLYS---------------------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP  214 (405)
Q Consensus       162 ~~L~~lL~~---------------------------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~  214 (405)
                      +.|...|..                           .+.......+..+.|+...+...-+.-.-.+.+..++.+..+..
T Consensus       110 ~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts  189 (464)
T PF11864_consen  110 PFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTS  189 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccC
Confidence            777766631                           12233445555666666544322121112234555555554455


Q ss_pred             chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc
Q 015537          215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (405)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL  294 (405)
                      +......++..+-.+.... ..+......++..|.......  +....+-.++.+|+......       ..+..|..+|
T Consensus       190 ~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL  259 (464)
T PF11864_consen  190 SEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDIL  259 (464)
T ss_pred             cHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHH
Confidence            5555566666666665542 222222334444444443222  55566666788887544332       1246777777


Q ss_pred             CC------CCcchHHHHHHHHhHhhcCChhhHHHHHhcC---chHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          295 MH------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---ALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       295 ~~------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g---~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      .+      .+..+...|+..++.+..+.......-+...   +++.+...++.+ ++.+--++.-.+.++..
T Consensus       260 ~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  260 RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD  330 (464)
T ss_pred             cccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence            32      2345667899999998877733222222222   788888888887 77777777777777763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.60  E-value=0.94  Score=46.10  Aligned_cols=192  Identities=21%  Similarity=0.195  Sum_probs=118.6

Q ss_pred             HHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH--HHHHhhhCCCch
Q 015537          140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV--PLLAQLNGQPKL  216 (405)
Q Consensus       140 ~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~--~L~~~l~~~~~~  216 (405)
                      +|.+++..+++....+++.|++..+...++. .+.+++..++..++|++...+ .+........+.  .+-.++.+..+.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            7778889999999999999999999999986 577899999999999995443 222222111111  223344345555


Q ss_pred             hHHHHHHHHHHHhhcCCCC-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-
Q 015537          217 SMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-  294 (405)
Q Consensus       217 ~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-  294 (405)
                      +.-..++..|+.+....+. .....-               +.+......++........   ......-+.+.+..++ 
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~~---~~~~~~~f~~~~~~il~  634 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSEI---RVINDRSFFPRILRILR  634 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccce---eehhhhhcchhHHHHhc
Confidence            7888888888888776432 111111               1122222222222221111   1111111222144444 


Q ss_pred             CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHH
Q 015537          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW  350 (405)
Q Consensus       295 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~  350 (405)
                      .+..+..+..|+|++.+++..+++....+.+.|+++.+.++-.......++.++--
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVL  690 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHH
Confidence            34566788999999999999888888888899999988887766533344444433

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.40  E-value=0.3  Score=40.85  Aligned_cols=110  Identities=10%  Similarity=0.154  Sum_probs=76.0

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHH-hcCCchhHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHh
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNI-ASGTSEHTKVVIDHGAVPIFVKLLYS---------PSDDVREQAVWALGNI  186 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni-~~~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~i~~~a~~~L~nl  186 (405)
                      -...+++.+.+.....   ..+.-|... -..+..+.+.+++.||+..|+.+|..         .+..+...++.||..|
T Consensus        67 ~p~~~i~~L~~~~~~~---~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS---KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHTTT--HH---HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccCccH---HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            3566777776655221   233333332 22335678889899999999998863         4567889999999999


Q ss_pred             hCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537          187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (405)
Q Consensus       187 ~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  230 (405)
                      ..........+...+++..|+..| .+++..++..++..|..+|
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            876665545555577888888888 7889999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.11  E-value=11  Score=41.16  Aligned_cols=81  Identities=11%  Similarity=0.062  Sum_probs=54.8

Q ss_pred             hHHHHHHHHhHhhcCCh-----------hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 015537          301 VLIPALRTVGNIVTGDD-----------MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV  369 (405)
Q Consensus       301 v~~~a~~~l~nl~~~~~-----------~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  369 (405)
                      .....+.++|-++...+           .+....+..+++..|.-+..+. +..+|..|.-.+|.+|..+|.   ++.+.
T Consensus      1188 ~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~~ 1263 (1692)
T KOG1020|consen 1188 KLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTSR 1263 (1692)
T ss_pred             HHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhhH
Confidence            44567888888886221           1112244557788888888888 899999999999999986554   44555


Q ss_pred             CcHHHHHHHHhccccc
Q 015537          370 HAFSIIVAFFFMFLHF  385 (405)
Q Consensus       370 ~~i~~L~~lL~~~~~~  385 (405)
                      .+...+..+|.+....
T Consensus      1264 ~v~nly~~ila~~n~~ 1279 (1692)
T KOG1020|consen 1264 EVLNLYDEILADDNSD 1279 (1692)
T ss_pred             HHHHHHHHHHhhhccc
Confidence            6666666666554433

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.10  E-value=1.8  Score=36.22  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=93.7

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      ++.+++...+++..++..|+..+.-++...=..|.+      .+|.++.+..+++ +.++..|...+..+....+.....
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence            678888889999999999999999887654233332      5999999999988 999999999999998764444333


Q ss_pred             HHhCCChHHHHHhhC----CCCHHH---HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC-------chhHHH
Q 015537          155 VIDHGAVPIFVKLLY----SPSDDV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-------KLSMLR  220 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~----~~~~~i---~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~-------~~~~~~  220 (405)
                      -...| +..-..+-.    +.....   ....+..+..+...+...|..+     +..|++.+....       ...-..
T Consensus        83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~  156 (187)
T PF12830_consen   83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD  156 (187)
T ss_pred             HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence            33323 322222221    111111   5556666777777666666654     445666663321       344455


Q ss_pred             HHHHHHHHhhcC
Q 015537          221 NATWTLSNFCRG  232 (405)
Q Consensus       221 ~a~~~l~~l~~~  232 (405)
                      .+.++..||+.-
T Consensus       157 ~~~Fla~nLA~l  168 (187)
T PF12830_consen  157 FLLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHHhcC
Confidence            666666666654

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.04  E-value=1.6  Score=41.22  Aligned_cols=133  Identities=15%  Similarity=0.142  Sum_probs=96.0

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCCc---hhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 015537          121 FVEFLLREDYPQLQFEAAWALTNIASGTS---EHTKVVIDHGAVPIFVKLLYS-------PSDDVREQAVWALGNIAGDS  190 (405)
Q Consensus       121 Li~lL~~~~~~~~~~~a~~~L~ni~~~~~---~~~~~~~~~g~i~~L~~lL~~-------~~~~i~~~a~~~L~nl~~~~  190 (405)
                      +..++...+ +.-|+.|+...+..+.+.+   ..++.+.+.-+.+.+-++|.+       ++.-.+..++..|..+|.+.
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            555666555 6789999999999988643   356678888889999999976       23446778888899998765


Q ss_pred             hhh-HHHHHhcCChHHHHHhhhCCCchh------HHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCC
Q 015537          191 PRC-RDLVLSQGGLVPLLAQLNGQPKLS------MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND  256 (405)
Q Consensus       191 ~~~-~~~i~~~~~i~~L~~~l~~~~~~~------~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d  256 (405)
                      +-. ...++  ..|+.|+..+.+..|+.      +...+-.+|..++...+........|.++.+.++-.-++
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~  165 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD  165 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence            422 12222  36888888886655544      889999999999998665555666899998887654433

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.97  E-value=1.1  Score=43.26  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=82.2

Q ss_pred             hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc--C
Q 015537          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT--G  315 (405)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~  315 (405)
                      ...+.+.+..++..+.+.|..|+..++..|+.+.+.-.+ ++..+-.|++..|..-+-+..+.|+..|+.+|+.+-.  +
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            566788999999999999999999999999998865433 3345556788888888888899999999999988753  2


Q ss_pred             ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       316 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      +++.       .....|+.+++..++..||+.|   +.|+.
T Consensus       165 neen-------~~~n~l~~~vqnDPS~EVRr~a---llni~  195 (885)
T COG5218         165 NEEN-------RIVNLLKDIVQNDPSDEVRRLA---LLNIS  195 (885)
T ss_pred             ChHH-------HHHHHHHHHHhcCcHHHHHHHH---HHHee
Confidence            2221       2344678888877688899887   45554

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.85  E-value=0.83  Score=38.24  Aligned_cols=124  Identities=12%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             CChHHHHHHHHHHHHhccCChhHHHHHHhc----------------CChHHHHHhcCC------CCcchHHHHHHHHhHh
Q 015537          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEA----------------GVFPRLAEFLMH------PSPSVLIPALRTVGNI  312 (405)
Q Consensus       255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~----------------~~l~~L~~lL~~------~~~~v~~~a~~~l~nl  312 (405)
                      .+......++..|+|++..+... ..+++.                ..+..|+.++..      +...-......++.|+
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            34445566777777877644332 222222                245666666643      2334556678888999


Q ss_pred             hcCChhhHHHHHhcC--c--hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhcc
Q 015537          313 VTGDDMQTQCVIEYQ--A--LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH---VHAFSIIVAFFFMF  382 (405)
Q Consensus       313 ~~~~~~~~~~~~~~g--~--l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~lL~~~  382 (405)
                      +.. +..++.+++..  .  +..|+.++.+. +..-|..++.+|-|+|-....+ ..+++   .+++|.|+--|...
T Consensus        86 S~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaGp  159 (192)
T PF04063_consen   86 SQL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAGP  159 (192)
T ss_pred             cCC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccCC
Confidence            764 44566666543  4  77888888888 7888888999999999877776 44543   58888888777643

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.71  E-value=6.6  Score=37.41  Aligned_cols=259  Identities=14%  Similarity=0.103  Sum_probs=132.4

Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--hhHHHHH
Q 015537           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--EHTKVVI  156 (405)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~--~~~~~~~  156 (405)
                      .+...+++...+..|+..|.+.+++-  |..-.-...-.+..++.-|.++.+.+++.++..+|+.+...-.  .....++
T Consensus       264 a~ka~dp~a~~r~~a~r~L~~~as~~--P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l  341 (533)
T KOG2032|consen  264 ANKATDPSAKSRGMACRGLGNTASGA--PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL  341 (533)
T ss_pred             HHhccCchhHHHHHHHHHHHHHhccC--cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence            33344566788889999999998763  2211111223455566555555558999999999998876411  1111111


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHh--cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~--~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                        .+.-.+..+..+.+++++..+...++.++... ...++.+.+  .+...+++-.+ +++++.+.+.+ ......|.  
T Consensus       342 --~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl-~d~~p~va~AC-r~~~~~c~--  415 (533)
T KOG2032|consen  342 --NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL-QDPNPYVARAC-RSELRTCY--  415 (533)
T ss_pred             --hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee-CCCChHHHHHH-HHHHHhcC--
Confidence              23445666778899999999999888887321 112233321  22344555555 66666555443 33333332  


Q ss_pred             CCCChhhhhccHHHHHhhhcCCCh-HHH-HHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          234 PQPPFDQVSPALPALAHLIHSNDD-EVL-TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~-~v~-~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      |.-......++++...    ..+. ..+ -+.-|+ ..+....++......     ....-++++.-+.++..+...-++
T Consensus       416 p~l~rke~~~~~q~~l----d~~~~~~q~Fyn~~c-~~L~~i~~d~l~~~~-----t~~~~~f~sswe~vr~aavl~t~~  485 (533)
T KOG2032|consen  416 PNLVRKELYHLFQESL----DTDMARFQAFYNQWC-IQLNHIHPDILMLLL-----TEDQHIFSSSWEQVREAAVLKTTR  485 (533)
T ss_pred             chhHHHHHHHHHhhhh----HHhHHHHHHHHHHHH-HHHhhhCHHHHHHHH-----HhchhheecchHHHHHHHHHHHHH
Confidence            2222222223333211    1111 110 011121 122222333222221     111222333334677777777777


Q ss_pred             hhcCChhhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          312 IVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       312 l~~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      ..-+-........+ ..+...+..+..++ -+++++.+.-++.-+.
T Consensus       486 ~vd~l~~~~c~~~d~~qL~~~ls~l~~dp-~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  486 SVDSLVRAACSSADGLQLRSSLSTLWRDP-RPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHhHHHHHHHhhHHHHHHHHHHHccCC-CchhHHHHHHHhhhHh
Confidence            76443333222222 22445555566666 8899998888887654

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=93.66  E-value=4.7  Score=38.64  Aligned_cols=264  Identities=12%  Similarity=0.076  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC----ChhhHHHHHhcCChHH
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGD----SPRCRDLVLSQGGLVP  205 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~----~~~~~~~i~~~~~i~~  205 (405)
                      +-+-....+++.-+-.+-......++. ..+..+....++ .+|..-+....+++.+...    ++... .-++...+++
T Consensus        44 eylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v-~~~E~~L~P~  121 (435)
T PF03378_consen   44 EYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAV-SQFEEALFPP  121 (435)
T ss_dssp             HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHH-HHHHHHHHHH
Confidence            444444445544443332333333322 233333334444 3667666666666666432    22211 1234456777


Q ss_pred             HHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCChhhhhccHHHHHhhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIE  283 (405)
Q Consensus       206 L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  283 (405)
                      +...| ...-.+..-++...++.|.+..+ ...-.....++|.|+.-.- .....+ -...+.|..+....+...   ..
T Consensus       122 f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~  196 (435)
T PF03378_consen  122 FQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VA  196 (435)
T ss_dssp             HHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG------
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cc
Confidence            77777 54445677777777777776654 2222344556665543211 111112 233334443333332221   22


Q ss_pred             c----CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh-hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-
Q 015537          284 A----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-  357 (405)
Q Consensus       284 ~----~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-  357 (405)
                      .    +++..+-.++.+...+  ..+...|..+...-+. ..+..+ ..++..+..-|+++...+..+.-+..++.++. 
T Consensus       197 ~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~  273 (435)
T PF03378_consen  197 NNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIK  273 (435)
T ss_dssp             -S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence            2    2334444566655433  3477777777765543 222122 23556666666655466666666666666654 


Q ss_pred             CCHHHHHHHHH---hCcHHHHHHH--HhcccccchhhhHHHHHHHHHhhhccC
Q 015537          358 GNREQIQVIMH---VHAFSIIVAF--FFMFLHFFFGAIIYKLAIWLCLVTCCE  405 (405)
Q Consensus       358 ~~~~~~~~l~~---~~~i~~L~~l--L~~~~~~~~~~~vr~~A~~al~n~~~~  405 (405)
                      .+++..-..++   .|++..++.-  +.....- .++.=||-++..+.++-||
T Consensus       274 ~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~-~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  274 YGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKV-SGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             H-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG---SHHHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhc-CCcchhhHHHHHHHHHHhc
Confidence            34554555543   6666666652  3332221 2334578888888886664

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.57  E-value=7.4  Score=38.85  Aligned_cols=184  Identities=16%  Similarity=0.096  Sum_probs=117.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-Cc----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 015537          119 PRFVEFLLREDYPQLQFEAAWALTNIASG-TS----EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (405)
Q Consensus       119 ~~Li~lL~~~~~~~~~~~a~~~L~ni~~~-~~----~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~  193 (405)
                      |.+..-|+..+ ..+|..|+..+.+.--- ++    +..+.+++ .-...+..+|+++-+.++..|+..+..+.+.   +
T Consensus       177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f  251 (1005)
T KOG1949|consen  177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK---F  251 (1005)
T ss_pred             HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---H
Confidence            44445566677 79999999999986432 12    33444554 3367788999999999999998888777632   1


Q ss_pred             HHHHHhcCC----hHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHH
Q 015537          194 RDLVLSQGG----LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY  269 (405)
Q Consensus       194 ~~~i~~~~~----i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~  269 (405)
                      -. ++-..+    +..+..-+..++..+++-.+...|..+..++  ........++|.+-..++++...|+.++...|..
T Consensus       252 We-~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  252 WE-MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HH-HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence            11 112222    3333444445666788989999998888774  2333446678888888888889999999888887


Q ss_pred             hccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537          270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (405)
Q Consensus       270 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~  313 (405)
                      +-+......-.+   --++.++.-|..++..+....+..|-+.+
T Consensus       329 ik~vra~~f~~I---~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  329 IKAVRAAKFWKI---CPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             HHhhhhhhhhcc---ccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            744322211111   12345566666666666555555555555

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=93.40  E-value=5.3  Score=35.39  Aligned_cols=218  Identities=15%  Similarity=0.118  Sum_probs=122.9

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 015537          121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVL  198 (405)
Q Consensus       121 Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i~  198 (405)
                      |=..|++++ +.+|..|+.+|+.+...-+...   +...-+..|+.++.+  .+......++.++..+........... 
T Consensus         4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-   78 (262)
T PF14500_consen    4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-   78 (262)
T ss_pred             hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence            445677777 8999999999999877644321   222224455554433  355555555777777763332111111 


Q ss_pred             hcCChHHHHHhhh-CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCChh
Q 015537          199 SQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTND  276 (405)
Q Consensus       199 ~~~~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~  276 (405)
                       ...+..+.+... +......+..+...+..+..+........-...+..+++.+.. .||.-..-+...+..+...-+.
T Consensus        79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence             112223332221 1223456777777777777664221222224566666777665 4888888887777766544321


Q ss_pred             HHHHHHhcCChHHHHHhcC---------C-CCc--chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhH
Q 015537          277 KIQAVIEAGVFPRLAEFLM---------H-PSP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (405)
Q Consensus       277 ~~~~~~~~~~l~~L~~lL~---------~-~~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v  344 (405)
                             ....+.+.+.+.         . +++  -.+..--..|.+..+.++....     -.+|.|++=|.++ .+.+
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~-~~~~  224 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDST-SPSV  224 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCC-CcHH
Confidence                   122333444332         1 122  1233334445454455554333     5688999999999 8889


Q ss_pred             HHHHHHHHHHHhc
Q 015537          345 KKEACWTVSNITA  357 (405)
Q Consensus       345 ~~~a~~~L~nl~~  357 (405)
                      |..+.-+|..++.
T Consensus       225 K~D~L~tL~~c~~  237 (262)
T PF14500_consen  225 KLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999876

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.38  E-value=0.38  Score=47.27  Aligned_cols=137  Identities=13%  Similarity=0.108  Sum_probs=95.2

Q ss_pred             ccHHHHHhhhcC----CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-CCCcchHHHHHHHHhHhhcCCh
Q 015537          243 PALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDD  317 (405)
Q Consensus       243 ~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~  317 (405)
                      ..-|.+.+...+    +|++++..|..+|..+..-+.+...     .-+|.++..+. +++|.++..|+..+|.++-.-.
T Consensus       892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN  966 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN  966 (1128)
T ss_pred             hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence            344555555544    6899999999999988665554433     33688888885 8999999999999999886544


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHH
Q 015537          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIW  397 (405)
Q Consensus       318 ~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~  397 (405)
                      ...+     ..-.+|.+-|.+. +..||+.+..++.++.-...-     --.|-++.+..+|...+.     .|...|..
T Consensus       967 ~~~d-----e~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda-----~Isdmar~ 1030 (1128)
T COG5098         967 TTAD-----EHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDA-----EISDMARH 1030 (1128)
T ss_pred             hhhH-----HHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcc-----hHHHHHHH
Confidence            3333     2345678888888 899999999999998743221     125777777777765432     36666555


Q ss_pred             HHh
Q 015537          398 LCL  400 (405)
Q Consensus       398 al~  400 (405)
                      ...
T Consensus      1031 fft 1033 (1128)
T COG5098        1031 FFT 1033 (1128)
T ss_pred             HHH
Confidence            443

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.36  E-value=3.7  Score=42.80  Aligned_cols=295  Identities=18%  Similarity=0.160  Sum_probs=163.3

Q ss_pred             hhcCHHHHHH-hhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--
Q 015537           71 KLENLPVMVA-GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--  147 (405)
Q Consensus        71 ~~~~l~~l~~-~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~--  147 (405)
                      +++++..+-. +|++++.++|...+..+.++.+.+ .++....-+.-.+|.|+.-+..-. ..+|...+.+|-.-...  
T Consensus       464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvn  541 (2799)
T KOG1788|consen  464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVN  541 (2799)
T ss_pred             chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhc
Confidence            4444444444 566788999999999999887643 333333335567888887776655 46666555555332211  


Q ss_pred             -CchhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHH
Q 015537          148 -TSEHTKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (405)
Q Consensus       148 -~~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~  225 (405)
                       -|+ +       -+-.|+-+|+.+ ...+....+.....+...+..+++.+.+-|.++.|-..+.+++-..--... ..
T Consensus       542 cvPe-q-------ELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy-sg  612 (2799)
T KOG1788|consen  542 CVPE-Q-------ELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY-SG  612 (2799)
T ss_pred             cCcH-H-------HHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh-hh
Confidence             011 1       122466677765 456666777777777777888889999999988887777432100000000 01


Q ss_pred             HHHhhcCCC-CCChhhh---hccHHHHHhhhcCC---ChH--H---HHHHHHHHHHhccCChhHHHHHHhcCChHHHHHh
Q 015537          226 LSNFCRGKP-QPPFDQV---SPALPALAHLIHSN---DDE--V---LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF  293 (405)
Q Consensus       226 l~~l~~~~~-~~~~~~~---~~~l~~L~~ll~~~---d~~--v---~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~l  293 (405)
                      ++.....+| ...+...   ...+-.--.+..+.   ++-  +   ..-.-.+|..+..++.++.+.+.++.++..++.+
T Consensus       613 vsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpf  692 (2799)
T KOG1788|consen  613 VSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPF  692 (2799)
T ss_pred             HHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEe
Confidence            111222221 1111110   01110001112221   111  0   0111235666777788888888888888999888


Q ss_pred             cCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-----------chhHHHHHHHHHHHHhcCCHHH
Q 015537          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-----------KKSIKKEACWTVSNITAGNREQ  362 (405)
Q Consensus       294 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-----------~~~v~~~a~~~L~nl~~~~~~~  362 (405)
                      +-  +++-+...++++..+...++.+..    +.-+-.+++.|+++.           ..........++..+...+...
T Consensus       693 li--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsa  766 (2799)
T KOG1788|consen  693 LI--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSA  766 (2799)
T ss_pred             ee--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchh
Confidence            83  445678888888888876665322    112334555555521           1234455556666665433343


Q ss_pred             HHHHHHhCcHHHHHHHHhcc
Q 015537          363 IQVIMHVHAFSIIVAFFFMF  382 (405)
Q Consensus       363 ~~~l~~~~~i~~L~~lL~~~  382 (405)
                      ....-+++++..|...|...
T Consensus       767 qrvFgeatGFslLlttLhtf  786 (2799)
T KOG1788|consen  767 QRVFGEATGFSLLLTTLHTF  786 (2799)
T ss_pred             eeehhccccHHHHHHHHHHh
Confidence            34555788888887777543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.33  E-value=4.3  Score=40.39  Aligned_cols=201  Identities=14%  Similarity=0.137  Sum_probs=117.4

Q ss_pred             hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH---HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 015537          109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLLYSPSDDVREQAVWALGN  185 (405)
Q Consensus       109 ~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~---~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~n  185 (405)
                      ...-++.|++..++.---....+.+....-.+|+..+.. ...++   .++-.=.=|.|.+-|+..|..++.+|+..+.+
T Consensus       122 L~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hq-kk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~  200 (1005)
T KOG1949|consen  122 LLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQ-KKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVE  200 (1005)
T ss_pred             hHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHH
Confidence            445567777877765432222122222222344444332 11111   11111122455566677899999999999999


Q ss_pred             hhC-CCh----hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhh-cCCChH
Q 015537          186 IAG-DSP----RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLI-HSNDDE  258 (405)
Q Consensus       186 l~~-~~~----~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll-~~~d~~  258 (405)
                      +.- .+|    +-.+.+++. -...+.++| .++-+.++..++.-+....... .-.+...+..++..+..-+ +.+..+
T Consensus       201 ~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~  278 (1005)
T KOG1949|consen  201 AFPIRDPDLHAEEMDSIIQK-QFEELYSLL-EDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSD  278 (1005)
T ss_pred             hccCCCCCccHHHHHHHHHH-HHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchh
Confidence            861 222    223444443 456778888 8888999888877776665543 2222222334444444333 344578


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC
Q 015537          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (405)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~  315 (405)
                      |+.....+|-++.......  .+.+. ++|.+-..|.+....|+.+++..|..|-..
T Consensus       279 VR~svf~gl~~~l~np~sh--~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~v  332 (1005)
T KOG1949|consen  279 VRCSVFKGLPMILDNPLSH--PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAV  332 (1005)
T ss_pred             eehhHhcCcHHHHcCccch--hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence            9999999999998765432  12322 356666777788889999999888877543

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.30  E-value=5.1  Score=34.87  Aligned_cols=200  Identities=18%  Similarity=0.188  Sum_probs=120.3

Q ss_pred             HHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh
Q 015537          162 PIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (405)
Q Consensus       162 ~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  240 (405)
                      +.|+. +-+..+++++...+.+|..++.+...+...     ++..+..+. ..+.......+...+..+-...+ ..+  
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f--   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF--   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence            44444 445678999999999999999776222222     233444444 55555555555566666655432 222  


Q ss_pred             hhccHHHHHhh--------hc--CCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHH
Q 015537          241 VSPALPALAHL--------IH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTV  309 (405)
Q Consensus       241 ~~~~l~~L~~l--------l~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l  309 (405)
                        +.+..++..        ..  +...+.......++..++...++.-.     .+++.+..+| .+.++.++..++.+|
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHH
Confidence              223222222        11  12245555666788888877766332     3467888888 788888999999999


Q ss_pred             hHhhcCChhhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHhcccc
Q 015537          310 GNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQVIMHVHAFSIIVAFFFMFLH  384 (405)
Q Consensus       310 ~nl~~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~  384 (405)
                      ..++...      +++ ......+.+-+..++.+.+.+..|-.+..+..+  +.+ ........++..++++....+.
T Consensus       147 ~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e-~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  147 APLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSE-EYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChh-hhhHHHHHHHHHHHhhcccccc
Confidence            9998322      222 124455556556665777777666555555443  222 2344578889999998877653

>PRK14707 hypothetical protein; Provisional

Probab=93.05  E-value=19  Score=40.84  Aligned_cols=298  Identities=15%  Similarity=0.076  Sum_probs=160.6

Q ss_pred             HHHHHHhhcC--CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           75 LPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        75 l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +..+++.+..  ++..-+. ++..|...+..+ +...+.+-..|+...|-.+-+-++++..+..+...-.-++.. ...+
T Consensus       165 ~~lllNafSKw~~~~~c~~-aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQA-VAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHH-HHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence            4556665542  3344444 444444444433 333444444454444455555566566666555444445554 4444


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      ..+-..| +...+..|+. ++.....+++.+|..=..+.+..++.+- ...+.-.++-|.+.++..+-..++..|..=.-
T Consensus       242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~-~q~vanalNalSKwpd~~vc~~Aa~~la~rl~  319 (2710)
T PRK14707        242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD-PINVTQALNALSKWADLPVCAEAAIALAERLA  319 (2710)
T ss_pred             HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence            4443334 5555555554 6665666666555543334444544432 22455566667788888887777666654333


Q ss_pred             CCCCCChhhh-hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHH
Q 015537          232 GKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTV  309 (405)
Q Consensus       232 ~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l  309 (405)
                      .++....... .++-..|..+-+-+|..+...+..+|..=...+++..+.+--.|+ ..+++-| +=++..+...+...|
T Consensus       320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~-a~~lNalsKWp~~~~c~~aa~~L  398 (2710)
T PRK14707        320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGV-SSVLNALSKWPDTPVCAAAASAL  398 (2710)
T ss_pred             ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHH-HHHHhhhhcCCCchHHHHHHHHH
Confidence            3333222222 333344555556677777777777666644455554443433343 4444444 456667777777777


Q ss_pred             hHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 015537          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFF  380 (405)
Q Consensus       310 ~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~  380 (405)
                      ..=..++.+..+.+-..|+-..|-.+-+-+ +..+...++-.|.--.+++.+..+.+--.+ +...++.|+
T Consensus       399 A~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalS  467 (2710)
T PRK14707        399 AEHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALS  467 (2710)
T ss_pred             HHHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhh
Confidence            766666666665444444444444444445 888888888877777677777554443333 333333343

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.84  E-value=0.82  Score=33.17  Aligned_cols=71  Identities=20%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (405)
Q Consensus       204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (405)
                      ...+..+ .++.+.++..++..|..|..... ........++..+...++++|+-|--+|+.++..|+...++
T Consensus         6 ~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    6 QEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            3455566 77888999999999999999865 34444578888899999999999999999999999977665

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.80  E-value=0.63  Score=41.30  Aligned_cols=144  Identities=17%  Similarity=0.171  Sum_probs=92.4

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh
Q 015537          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (405)
Q Consensus       161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  240 (405)
                      +...+..|.+.+......++..+..++...++.....+. ..+..+++-+ ++....+-+.++.++..+...-.......
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666667777777777777777554433222222 2555666667 77888999999999998887643222222


Q ss_pred             hhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (405)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~  313 (405)
                      ..+++..|..--..++.-|+.++-.+|..+..+-.-.       .+++.|+..+.+..+.++..++.++.+..
T Consensus       168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            2333333322222234568999999999988654432       24678888888889988888887776654

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.73  E-value=0.66  Score=38.86  Aligned_cols=124  Identities=16%  Similarity=0.099  Sum_probs=78.5

Q ss_pred             CCCHHHHHHHHHHHHHhhCCChhhHHHHH---------------hcCChHHHHHhhhC-----CCchhHHHHHHHHHHHh
Q 015537          170 SPSDDVREQAVWALGNIAGDSPRCRDLVL---------------SQGGLVPLLAQLNG-----QPKLSMLRNATWTLSNF  229 (405)
Q Consensus       170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~i~---------------~~~~i~~L~~~l~~-----~~~~~~~~~a~~~l~~l  229 (405)
                      ++.......++..|+|++.....++..+-               +...+..|+..+.+     .....-..+++..|.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            34555677888899999877665543221               12246677777755     22356678899999999


Q ss_pred             hcCCCCCChhhh--hc--cHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhc
Q 015537          230 CRGKPQPPFDQV--SP--ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL  294 (405)
Q Consensus       230 ~~~~~~~~~~~~--~~--~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL  294 (405)
                      ++......+...  ..  .+..|+.++.+.+..-+.-++.+|.|+|-....+ ..++..   +++|.|+--|
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence            987533322222  22  3777888888887777788899999998665544 334432   3444444433

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.65  E-value=15  Score=39.94  Aligned_cols=75  Identities=17%  Similarity=0.222  Sum_probs=52.6

Q ss_pred             CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (405)
Q Consensus       285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (405)
                      |++|.|-.-|.+.+..+|..|+..+|.+......+.. --...+...++.-+.+. +..+|.++.-...++...++.
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~  333 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPS  333 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCch
Confidence            7889999999999999999999999999876553322 00112445555555566 677777777777777665444

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.62  E-value=2.2  Score=38.03  Aligned_cols=146  Identities=19%  Similarity=0.168  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--Ch
Q 015537          132 QLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GL  203 (405)
Q Consensus       132 ~~~~~a~~~L~ni~~~~~~~~~~~~~~g--~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~--~i  203 (405)
                      +-+.-++..+.-++.+ +.....+...+  +...+..++..    ..+..+-.++++++|+..+.. .+..+....  .+
T Consensus        78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence            4466666666555554 33333333322  23444444432    467788899999999998766 455555432  23


Q ss_pred             HHHHHhhhCCC---chhHHHHHHHHHHHhhcCC-CCC-ChhhhhccHHHHHhhh-cC-CChHHHHHHHHHHHHhccCChh
Q 015537          204 VPLLAQLNGQP---KLSMLRNATWTLSNFCRGK-PQP-PFDQVSPALPALAHLI-HS-NDDEVLTDACWALSYLSDGTND  276 (405)
Q Consensus       204 ~~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~-~~~-~~~~~~~~l~~L~~ll-~~-~d~~v~~~a~~~l~~l~~~~~~  276 (405)
                      ...+..+....   +..++..++..+.|++-.. ... .......++..+...+ .. .|+++...++-+++++...++.
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            33333332333   7888999999999997653 111 2222234666666633 33 6899999999999999966654


Q ss_pred             HHH
Q 015537          277 KIQ  279 (405)
Q Consensus       277 ~~~  279 (405)
                      ..+
T Consensus       236 ~~~  238 (268)
T PF08324_consen  236 AKQ  238 (268)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.26  E-value=1.6  Score=36.20  Aligned_cols=111  Identities=17%  Similarity=0.165  Sum_probs=75.4

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcC-----C--------------hHHHHHhcCC-CCcchHHHHH
Q 015537          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-----V--------------FPRLAEFLMH-PSPSVLIPAL  306 (405)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-----~--------------l~~L~~lL~~-~~~~v~~~a~  306 (405)
                      .+..++.++++.++..|+.++..|.++........-+.+     +              -..|+..|.. .+..+....+
T Consensus        44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l  123 (182)
T PF13251_consen   44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL  123 (182)
T ss_pred             hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            344556778899999999999999988765544443222     1              1123444443 3667888999


Q ss_pred             HHHhHhhcCChhhHHH-HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537          307 RTVGNIVTGDDMQTQC-VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (405)
Q Consensus       307 ~~l~nl~~~~~~~~~~-~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (405)
                      ++++.++...+...-. =+-..++..+..++.+. |+.++..+.-+++-+.+.
T Consensus       124 K~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  124 KCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence            9999999988754321 11123455566677777 999999999899888753

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=92.17  E-value=3.4  Score=42.01  Aligned_cols=157  Identities=18%  Similarity=0.197  Sum_probs=109.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .|..++..|.|.+..+..++-..+...+..++.+ +       ++..|+++.-+.++    ..|+.+|..+  ..|..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~-------l~~~l~~y~~~t~s----~~~~~il~~~--~~P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP-W-------LVNGLVDYYLSTNS----QRALEILVGV--QEPHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-H-------HHHHHHHHHhhcCc----HHHHHHHHhc--CCccHH-
Confidence            5789999999999999988888888887654222 1       26677776544442    3455566654  223222 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                           ..+..|-..+.  .+.-+-.++..|+.+....+..-..+.+...+..|++.|..+.+..+...++.+|.-|.-.-
T Consensus        70 -----~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 23444555555  45667789999999998877777888899999999999988889999999999988887655


Q ss_pred             CCCChhhhhccHHHHHhhh
Q 015537          234 PQPPFDQVSPALPALAHLI  252 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll  252 (405)
                      |.........++.+...++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            5444444444444444444

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.12  E-value=0.99  Score=32.75  Aligned_cols=72  Identities=13%  Similarity=0.139  Sum_probs=58.2

Q ss_pred             hHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537          287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (405)
Q Consensus       287 l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (405)
                      +...+..|.++.+.+|..++..|..+.....  ....-..+++..+...+.++ ++.|=-.|...|+.++...++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence            4556677888999999999999999998766  11122346888999999999 999999999999999876665

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=91.99  E-value=8.4  Score=34.15  Aligned_cols=220  Identities=15%  Similarity=0.102  Sum_probs=126.5

Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR--EDYPQLQFEAAWALTNIASGTSEHTKVV  155 (405)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~--~~~~~~~~~a~~~L~ni~~~~~~~~~~~  155 (405)
                      |=..|.++|+..+..|+..|..++..-  ++ . .....-+..|++++.+  .+ ......++..+..+.....-.... 
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~l--p~-~-~L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~~~~~~-   77 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERL--PP-D-FLSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKNFSPES-   77 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhC--CH-h-hccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcCCChhh-
Confidence            334678899999999999999988643  21 1 1222224555554432  23 344555566666666432211111 


Q ss_pred             HhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHH--hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          156 IDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVL--SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       156 ~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~~~~~~~~i~--~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                       ...++..+..-..  +.....|..+...+..+..+..   ..+.  ..+.+..++..+....||.-.-.+...+..+..
T Consensus        78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~  153 (262)
T PF14500_consen   78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ  153 (262)
T ss_pred             -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence             0012222322111  2345667788888888875432   2222  234677888888777899988888888888877


Q ss_pred             CCCCCChhhhhccHHHHHhhh----c-C-CCh--HHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHH
Q 015537          232 GKPQPPFDQVSPALPALAHLI----H-S-NDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI  303 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll----~-~-~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~  303 (405)
                      ..+.  ....+.+...+....    + . +|+  -...+...+|.......+....     -.+|.|++-|.++.+.++.
T Consensus       154 ~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K~  226 (262)
T PF14500_consen  154 EFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVKL  226 (262)
T ss_pred             hccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHHH
Confidence            6542  222233444433332    1 1 232  1334444445544434443333     3569999999999999999


Q ss_pred             HHHHHHhHhhc
Q 015537          304 PALRTVGNIVT  314 (405)
Q Consensus       304 ~a~~~l~nl~~  314 (405)
                      .++.+|...+.
T Consensus       227 D~L~tL~~c~~  237 (262)
T PF14500_consen  227 DSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=91.98  E-value=1.6  Score=43.41  Aligned_cols=136  Identities=13%  Similarity=0.047  Sum_probs=92.5

Q ss_pred             hhhhhccHHHHHhhhcC--------CChHHHHHHHHHHHHhcc--CChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537          238 FDQVSPALPALAHLIHS--------NDDEVLTDACWALSYLSD--GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (405)
Q Consensus       238 ~~~~~~~l~~L~~ll~~--------~d~~v~~~a~~~l~~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  307 (405)
                      .....|+++.+...+..        +++.-...|++.++++.+  ..+.-..-+++.=+++.++..++++..-++..||.
T Consensus       403 e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace  482 (970)
T COG5656         403 EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE  482 (970)
T ss_pred             hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence            33457899999888832        123445667777777765  22333344566667788888888888889999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF  379 (405)
Q Consensus       308 ~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL  379 (405)
                      .++.+.   .+..+..+-..+.+...+++.+. +-.++-+|+.++.-+..+.  +....+.+.+.+.+-++|
T Consensus       483 ~is~~e---eDfkd~~ill~aye~t~ncl~nn-~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLL  548 (970)
T COG5656         483 FISTIE---EDFKDNGILLEAYENTHNCLKNN-HLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLL  548 (970)
T ss_pred             HHHHHH---HhcccchHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHH
Confidence            999883   22333344446677788888887 8899999999999998754  344444555555444444

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=91.88  E-value=1.8  Score=49.48  Aligned_cols=202  Identities=15%  Similarity=0.158  Sum_probs=116.6

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh---CCCchhHHHHHHHHHHHhhc
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~  231 (405)
                      ..+.+.+..+...+.+..-.+++.+...+++++..+|.+.-..+.    ...+..+.   .+.-.-+......-+..+..
T Consensus       561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~  636 (2341)
T KOG0891|consen  561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR----KTLLELLTELEFSGMARTKEESAKLLCELII  636 (2341)
T ss_pred             hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH----HHHHHHhchhhhcchHHhHHHHHHHhhHHHH
Confidence            334455666777777778889999999999999877633211111    11122221   11111111111111111111


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHh
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVG  310 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~  310 (405)
                      ..+.-....+.+.+..++..+...++.+...+..+++.|+..........++ ..++.+.+.+ ...+..-+..++++++
T Consensus       637 ~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~  715 (2341)
T KOG0891|consen  637 SSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALG  715 (2341)
T ss_pred             HHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence            1111122233455666777778888888888889999988654432322333 3344444444 3345566888999999


Q ss_pred             HhhcCChhhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537          311 NIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (405)
Q Consensus       311 nl~~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (405)
                      ++............+ .-++..+...+.......++.++...++++.+.++.
T Consensus       716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~  767 (2341)
T KOG0891|consen  716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY  767 (2341)
T ss_pred             hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence            999765543222222 247778888888777788999999999988764443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.75  E-value=14  Score=37.48  Aligned_cols=255  Identities=11%  Similarity=0.076  Sum_probs=127.6

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhh
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRC  193 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~--~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~-~~~  193 (405)
                      ...++.+|++.++-.++..++.++.-...+-.-..+.+..  ......+..++.. +.-+-+...+.+++.+...- +..
T Consensus       528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I  607 (978)
T KOG1993|consen  528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI  607 (978)
T ss_pred             HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            4556777777654667777888777766653222333321  1333344444443 34455666777777776432 211


Q ss_pred             HHHHHhcCChHHHHHhhhCC-CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChH---HHHHHHHHHHH
Q 015537          194 RDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE---VLTDACWALSY  269 (405)
Q Consensus       194 ~~~i~~~~~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~---v~~~a~~~l~~  269 (405)
                      +....+  ++..+=.+-..+ +.+-++...+.++.|+...-.........-++|.+-....-+.|+   ..+++...=..
T Consensus       608 ~P~~~~--ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~  685 (978)
T KOG1993|consen  608 APYAST--IVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLT  685 (978)
T ss_pred             hHHHHH--HHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHH
Confidence            111111  122222222223 355667777888999988654334433334444443333322222   33333222111


Q ss_pred             hccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHH
Q 015537          270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC  349 (405)
Q Consensus       270 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~  349 (405)
                      ...+.+.....+.  +++|.++..+.......+ .++.++..-.--+...--.-...|+...+..++.+- ..+-....+
T Consensus       686 ~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avL  761 (978)
T KOG1993|consen  686 TLMNSQKLTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVL  761 (978)
T ss_pred             HHhcccccCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            2222222222222  467888888765443333 344444433322221111223346778888888766 555555666


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537          350 WTVSNITAGNREQIQVIMHVHAFSIIVAFF  379 (405)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL  379 (405)
                      -++.++...++ ........+++|.+..-.
T Consensus       762 kiveili~t~~-il~~~~~~~~L~~lf~~I  790 (978)
T KOG1993|consen  762 KIVEILIKTNP-ILGSLLFSPLLSRLFLSI  790 (978)
T ss_pred             HHHHHHHhhhH-HHHhhhcchhhHHHHHHH
Confidence            67777766555 355566677777776655

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.71  E-value=13  Score=35.61  Aligned_cols=152  Identities=16%  Similarity=0.089  Sum_probs=86.8

Q ss_pred             hcCcHHHHHHHh----cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhC
Q 015537          114 RSGVVPRFVEFL----LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAG  188 (405)
Q Consensus       114 ~~g~l~~Li~lL----~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~  188 (405)
                      +.|.+..++..+    ++++ ..++..|+.+|+|.+++-|........ -.+..++.-|. ..+.+|+..++.+|..+..
T Consensus       252 ~~~lL~s~~~~la~ka~dp~-a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~  329 (533)
T KOG2032|consen  252 KTGLLGSVLLSLANKATDPS-AKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE  329 (533)
T ss_pred             ccccHHHHHHHHHHhccCch-hHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence            345555554443    3444 689999999999999985554443333 23445555444 4578899999999888764


Q ss_pred             CChhhHHHHHhcCCh---HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh-hh---hhccHHHHHhhhcCCChHHHH
Q 015537          189 DSPRCRDLVLSQGGL---VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQ---VSPALPALAHLIHSNDDEVLT  261 (405)
Q Consensus       189 ~~~~~~~~i~~~~~i---~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~---~~~~l~~L~~ll~~~d~~v~~  261 (405)
                      .-. .  .-+..+.+   ..+..++ .+.+.+++.++...+..|+........ .+   +.+.+..++-.+++.++.+ .
T Consensus       330 ~~~-~--~~l~~~~l~ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a  404 (533)
T KOG2032|consen  330 KAS-N--DDLESYLLNIALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-A  404 (533)
T ss_pred             hhh-h--cchhhhchhHHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-H
Confidence            321 1  11122222   3344445 778888998888888777665422222 12   2222222333344455543 5


Q ss_pred             HHHHHHHHhcc
Q 015537          262 DACWALSYLSD  272 (405)
Q Consensus       262 ~a~~~l~~l~~  272 (405)
                      .||......+.
T Consensus       405 ~ACr~~~~~c~  415 (533)
T KOG2032|consen  405 RACRSELRTCY  415 (533)
T ss_pred             HHHHHHHHhcC
Confidence            56666655553

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.59  E-value=1.4  Score=37.26  Aligned_cols=142  Identities=13%  Similarity=0.159  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCCc-hhHHHHHhCCChHH
Q 015537           89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----DYPQLQFEAAWALTNIASGTS-EHTKVVIDHGAVPI  163 (405)
Q Consensus        89 ~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~----~~~~~~~~a~~~L~ni~~~~~-~~~~~~~~~g~i~~  163 (405)
                      -...|+..|.-++|.  .+....+++..+--.+..+|...    ..+-++..++.+++.+..+++ .....+....++|.
T Consensus       116 RvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL  193 (315)
T COG5209         116 RVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL  193 (315)
T ss_pred             HHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence            334555555555542  34444566665433444555432    235688999999999888644 44556667799999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-------cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~-------~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      +++.+...+.--+..++.+++.+.+++...+-....       ...+..++..+-......+.+.++.+-..||..
T Consensus       194 cLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            999999999888999999999999887654332211       112333333343445666777777777777665

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=91.58  E-value=9.3  Score=33.83  Aligned_cols=216  Identities=16%  Similarity=0.098  Sum_probs=120.0

Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccCC--CCchHH-HH------hc-CcHHHH----HHHhcCCCCHHHHHHHHHHHHHH
Q 015537           79 VAGVWSNDSGVQYECTTQFRKLLSIER--SPPIEE-VI------RS-GVVPRF----VEFLLREDYPQLQFEAAWALTNI  144 (405)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~~~~-~~------~~-g~l~~L----i~lL~~~~~~~~~~~a~~~L~ni  144 (405)
                      +.+|.+..+..-..|+..+.++++.-+  ++.... +.      .. |..+-+    ++=|.++.   ....++..|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence            446667777777777777777765421  111111 11      11 333333    44444433   345555566655


Q ss_pred             hcCC-------chhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCC
Q 015537          145 ASGT-------SEHTKVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ  213 (405)
Q Consensus       145 ~~~~-------~~~~~~~~~~g~i~~L~~lL~~~~----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~  213 (405)
                      +...       .+.|-.+.-.+.+|.++.-+.+++    ......++..|+.+|....        ...+..++..+.+.
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            5432       112322222345677777777766    2445567788888873321        22344555555443


Q ss_pred             CchhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHH
Q 015537          214 PKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (405)
Q Consensus       214 ~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  292 (405)
                      .-.........++..++++. |..    ....+..+..++.++-+.++..++..|..+...-+-...  ...+++..+.+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~P~~----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllr  235 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFFPDH----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLR  235 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHH
Confidence            33333333333344444443 322    235667788899888899999999999988765433222  44567888888


Q ss_pred             hcCCCCcchHHHHHHHHhHhhc
Q 015537          293 FLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       293 lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      +|+++-   -..|+.++-++.+
T Consensus       236 lL~t~~---~~eAL~VLd~~v~  254 (262)
T PF14225_consen  236 LLQTDL---WMEALEVLDEIVT  254 (262)
T ss_pred             HhCCcc---HHHHHHHHHHHHh
Confidence            886643   4566766666554

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=91.44  E-value=0.7  Score=39.56  Aligned_cols=84  Identities=13%  Similarity=0.173  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHhcC-------cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH-HHhCC
Q 015537           88 GVQYECTTQFRKLLSIERSPPIEEVIRSG-------VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV-VIDHG  159 (405)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-------~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~-~~~~g  159 (405)
                      .-|..|+.++.|+.-.  +.+++.++..+       ++..|+++|....++..++-|+-.|.+++.++...... ..+.+
T Consensus       139 SPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            5688899999999654  35555555443       46677777877666889999999999999987665544 45568


Q ss_pred             ChHHHHHhhCCCCH
Q 015537          160 AVPIFVKLLYSPSD  173 (405)
Q Consensus       160 ~i~~L~~lL~~~~~  173 (405)
                      .|..|+.++.+...
T Consensus       217 ~i~~Li~FiE~a~~  230 (257)
T PF12031_consen  217 CISHLIAFIEDAEQ  230 (257)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999986433

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=91.43  E-value=8.2  Score=38.27  Aligned_cols=142  Identities=15%  Similarity=0.120  Sum_probs=70.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      ++..+=+.+.++++.+..-|+-.+.-.-++-.++.      .-++-.|.+.+++++ ..++..|+.-|+-.-+++  +++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            35555555555555555444433322211111110      012445667777777 678888887777655552  333


Q ss_pred             HHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          154 VVIDHGAVPIFVKLLYSPS--DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~--~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      .+..     .|..++.+.+  .++...+..+|+.+...+..  ..+ ...+++.++..-.........+...-.|..+.-
T Consensus       487 ~V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            3332     5556666644  45777777788877644321  111 111333444433212233444555555555554


Q ss_pred             C
Q 015537          232 G  232 (405)
Q Consensus       232 ~  232 (405)
                      +
T Consensus       559 g  559 (878)
T KOG2005|consen  559 G  559 (878)
T ss_pred             c
Confidence            4

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=91.39  E-value=9.3  Score=33.44  Aligned_cols=135  Identities=16%  Similarity=0.193  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 015537          132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD--------VREQAVWALGNIAGDSPRCRDLVLSQGGL  203 (405)
Q Consensus       132 ~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~--------i~~~a~~~L~nl~~~~~~~~~~i~~~~~i  203 (405)
                      .....|+..|+.+-.           ..+++.++++++.++..        +-+....+++.+            -.|-+
T Consensus        57 ~~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~  113 (249)
T PF06685_consen   57 NLHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDI  113 (249)
T ss_pred             HHHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCH
Confidence            445666666665532           35799999999865542        122222222222            23556


Q ss_pred             HHHHHhhhCCC-chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC-ChhHHHHH
Q 015537          204 VPLLAQLNGQP-KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAV  281 (405)
Q Consensus       204 ~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~  281 (405)
                      ..|..++.+.. +.-++..++.++..+....+......+.-+-..+...+..++..+....+..+..|-.. -...+..+
T Consensus       114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~  193 (249)
T PF06685_consen  114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKA  193 (249)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHH
Confidence            67777774433 67788999999999999876555554444444444445444333333333333333211 11335556


Q ss_pred             HhcCChHH
Q 015537          282 IEAGVFPR  289 (405)
Q Consensus       282 ~~~~~l~~  289 (405)
                      .+.|.++.
T Consensus       194 f~~~lVd~  201 (249)
T PF06685_consen  194 FEDGLVDP  201 (249)
T ss_pred             HHcCCCCc
Confidence            66666654

The function of this family is unknown.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.35  E-value=7.7  Score=32.42  Aligned_cols=145  Identities=16%  Similarity=0.094  Sum_probs=92.3

Q ss_pred             ChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHH
Q 015537          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA  280 (405)
Q Consensus       202 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~  280 (405)
                      .++.++++. .+++..++..|+..+..+.+.. -.+     ..++|.++.|..++++.++..|...+..+.+..+.....
T Consensus         9 yl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen    9 YLKNILELC-LSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence            456677766 7889999999999999888764 111     358899999999999999999999999998776655443


Q ss_pred             HHhcCChHHH--HHhcCCCCc-ch---HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-------chhHHHH
Q 015537          281 VIEAGVFPRL--AEFLMHPSP-SV---LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-------KKSIKKE  347 (405)
Q Consensus       281 ~~~~~~l~~L--~~lL~~~~~-~v---~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-------~~~v~~~  347 (405)
                      -...|+-...  ...+..+.. ..   ....+..+-.++.++...+..     ++..|++.+....       .+.-...
T Consensus        83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~~  157 (187)
T PF12830_consen   83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLDF  157 (187)
T ss_pred             HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHHH
Confidence            3333322221  111221111 11   445555666666655555553     4555666665431       3344566


Q ss_pred             HHHHHHHHhc
Q 015537          348 ACWTVSNITA  357 (405)
Q Consensus       348 a~~~L~nl~~  357 (405)
                      .+++.-|++.
T Consensus       158 ~~Fla~nLA~  167 (187)
T PF12830_consen  158 LLFLAENLAT  167 (187)
T ss_pred             HHHHHHHHhc
Confidence            7777778775

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=90.74  E-value=17  Score=35.32  Aligned_cols=155  Identities=15%  Similarity=0.165  Sum_probs=109.1

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC---chhHHHHHHHHHHHhhcCCCCCC
Q 015537          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPP  237 (405)
Q Consensus       161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~  237 (405)
                      ...+...+.++++.-+..++..|..++.+.. +...++...++..|..++.+..   ..++....+.+++.+-...- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            3456667777777777778888888887665 6677788889999999995443   35667777777776665532 22


Q ss_pred             hhhh-hccHHHHHhhh--cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          238 FDQV-SPALPALAHLI--HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       238 ~~~~-~~~l~~L~~ll--~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      +..+ ..++.....+.  +.-+..+...|+..+-.+.-+++...+.+.+.--+..|+..|+..+..++..|+..+..+..
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            2211 23333333333  23467788888999988888888777878888889999999999898888888888877765


Q ss_pred             CCh
Q 015537          315 GDD  317 (405)
Q Consensus       315 ~~~  317 (405)
                      ..+
T Consensus       243 ~a~  245 (713)
T KOG2999|consen  243 KAP  245 (713)
T ss_pred             hCC
Confidence            443

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=90.72  E-value=13  Score=33.90  Aligned_cols=154  Identities=13%  Similarity=0.087  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCC-----------ChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhh
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVIDHG-----------AVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRC  193 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g-----------~i~~L~~lL~------~~~~~i~~~a~~~L~nl~~~~~~~  193 (405)
                      -++|..|+.|+.....++++.+..+++.-           ....|+..|-      +.++.-..-|..+|.++..+++..
T Consensus        52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~  131 (312)
T PF04869_consen   52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA  131 (312)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence            67899999999999999898888776521           1222444443      234444556777777777777666


Q ss_pred             HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh----c-CCChHHHHHHHHHHH
Q 015537          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----H-SNDDEVLTDACWALS  268 (405)
Q Consensus       194 ~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll----~-~~d~~v~~~a~~~l~  268 (405)
                      ++.+..-       ..                   .........    ...++.+..+|    . ..|+.++..-+..|.
T Consensus       132 Ke~al~V-------~~-------------------~~~~~ge~~----vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~  181 (312)
T PF04869_consen  132 KEQALRV-------TE-------------------GDESSGEEP----VTLIQTVSELLIASLRRNSDPRIQIGYLMLLI  181 (312)
T ss_dssp             HHHHTT---------E-------------------E--STTS------EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred             HHHHHcc-------cC-------------------CCCCCCCCc----ccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence            5554331       00                   000001111    12333333333    2 346778888788887


Q ss_pred             HhccCChhHHHHHHhc-CChHHHHHhcCC---CCcchHHHHHHHHhHhhc
Q 015537          269 YLSDGTNDKIQAVIEA-GVFPRLAEFLMH---PSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       269 ~l~~~~~~~~~~~~~~-~~l~~L~~lL~~---~~~~v~~~a~~~l~nl~~  314 (405)
                      ....+++..+..+++. +.++.|+.....   .+.-++--+...||-+..
T Consensus       182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence            7777888877878777 578888887532   234455555566665543

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=90.09  E-value=1.1  Score=35.63  Aligned_cols=74  Identities=8%  Similarity=0.030  Sum_probs=59.0

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~  146 (405)
                      +.+..+.+.|++.++.+|..|+..|--+...-..+...++.+.+++..|+.++.....+.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999998887653234455677889999999999854448899999888877664

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=90.04  E-value=3.7  Score=36.89  Aligned_cols=138  Identities=12%  Similarity=0.169  Sum_probs=80.4

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH-HHHHhCCChHH----HHHhhC--------CCCHHHHHHHHHHH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT-KVVIDHGAVPI----FVKLLY--------SPSDDVREQAVWAL  183 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~-~~~~~~g~i~~----L~~lL~--------~~~~~i~~~a~~~L  183 (405)
                      ++|.++.++++.+ +.+|..++.+|..+....+... ..+.+.|..+.    |...+.        .+...+...+.-++
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            5899999999987 9999999999999988644333 23555665443    333443        34566888888888


Q ss_pred             HHhhCC----ChhhHHHHHhcCChHHHHHhhhC---CCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC
Q 015537          184 GNIAGD----SPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN  255 (405)
Q Consensus       184 ~nl~~~----~~~~~~~i~~~~~i~~L~~~l~~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~  255 (405)
                      ..++.-    +...+......-.-+.++.-+..   .+.+.+....+..+..+...-..........+++.+.+.+.+.
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            888531    11111111111111212222222   2246777777777766666533333444466677776666544

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=89.95  E-value=1.6  Score=38.93  Aligned_cols=134  Identities=16%  Similarity=0.116  Sum_probs=78.4

Q ss_pred             CchhHHHHHHHHHHHhhcCCCCCChhhh--h-ccHHHHHhhhcCC---ChHHHHHHHHHHHHhccCChhHH-HHHHhcCC
Q 015537          214 PKLSMLRNATWTLSNFCRGKPQPPFDQV--S-PALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKI-QAVIEAGV  286 (405)
Q Consensus       214 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~-~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~  286 (405)
                      ..+..+-.++++++|+..+.+.......  . .++..+.....+.   +..++..++..+.|++-...... ..-....+
T Consensus       122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l  201 (268)
T PF08324_consen  122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL  201 (268)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            5677888899999999987543322221  2 2334444444443   68888999888888863211000 00001123


Q ss_pred             hHHHHHhc-CC-CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537          287 FPRLAEFL-MH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (405)
Q Consensus       287 l~~L~~lL-~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~  347 (405)
                      +..++..+ .. .+++....++-++|+++..++.........|+-..+...-....++++++-
T Consensus       202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v  264 (268)
T PF08324_consen  202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEV  264 (268)
T ss_dssp             HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHH
Confidence            45566633 22 578899999999999997776655544444555555554443335555543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.87  E-value=1.6  Score=38.92  Aligned_cols=140  Identities=15%  Similarity=0.157  Sum_probs=96.7

Q ss_pred             HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  283 (405)
Q Consensus       204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  283 (405)
                      ...+..| .+.+-......+..+..|+..++......+..++..+++-+++....|-..||.+++.+...-...+...  
T Consensus        91 ~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~--  167 (334)
T KOG2933|consen   91 KQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE--  167 (334)
T ss_pred             HHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3445555 6667777777778888888877655555667777788888888888899999999998876544443332  


Q ss_pred             cCChHHHH-HhcCCC---CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          284 AGVFPRLA-EFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       284 ~~~l~~L~-~lL~~~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                         ++.++ .+|...   +.-++..|-.+|-.++.+-..+       .+++.|...+.+. .+.++..++.+..++..
T Consensus       168 ---ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  168 ---LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI  234 (334)
T ss_pred             ---HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence               23333 444322   3347888888888777543322       3577788888888 89999998888887754

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=89.65  E-value=1.7  Score=44.62  Aligned_cols=132  Identities=15%  Similarity=0.158  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh
Q 015537          173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI  252 (405)
Q Consensus       173 ~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll  252 (405)
                      +.++.+++-+++++|--....     ....+|.+++-|..+....++.+++-++.-+|..-    ..++...+|.+...|
T Consensus       945 ~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence            557888999999998533322     23368899999988888999999988888888652    234578899999999


Q ss_pred             cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537          253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (405)
Q Consensus       253 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  317 (405)
                      .++++-|+..++-.|++|....--...-    .++-+++-.|-+.+++++..|=.+++.+.....
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw~G----~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKWNG----ELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhhhhhcch----hhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999987543221110    112233333445678899999999999986543

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=89.61  E-value=17  Score=33.55  Aligned_cols=154  Identities=18%  Similarity=0.112  Sum_probs=103.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CCchhHHHHHhC-C-ChHHHHHhhCC-----CC--------HHHHHHHHH
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTKVVIDH-G-AVPIFVKLLYS-----PS--------DDVREQAVW  181 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~-~~~~~~~~~~~~-g-~i~~L~~lL~~-----~~--------~~i~~~a~~  181 (405)
                      ++.+...|++.. +.+...++..|..++. ........+... + -.+.+..++..     ..        +.+|...+.
T Consensus        58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            778888888888 7888899999999999 655666666654 2 23556666642     11        288888887


Q ss_pred             HHHHhhC-CChhhHHHHHh-cCChHHHHHhhhCCCchhHHHHHHHHHHH-hhcCC--CCCC--hhhhhccHHHHHhhhcC
Q 015537          182 ALGNIAG-DSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSN-FCRGK--PQPP--FDQVSPALPALAHLIHS  254 (405)
Q Consensus       182 ~L~nl~~-~~~~~~~~i~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~~-l~~~~--~~~~--~~~~~~~l~~L~~ll~~  254 (405)
                      .+..+.. .++..+..+++ .+.+..+.+-| ...+.++...++.++.. +....  +...  .......+..|..+...
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~  215 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR  215 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence            7766654 44555555554 45677788888 55677788888888774 44433  1111  12226778888887777


Q ss_pred             CCh----HHHHHHHHHHHHhccC
Q 015537          255 NDD----EVLTDACWALSYLSDG  273 (405)
Q Consensus       255 ~d~----~v~~~a~~~l~~l~~~  273 (405)
                      .++    .+...+-..|..+|..
T Consensus       216 ~~~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  216 DGEDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             cCCcccchHHHHHHHHHHHHhcC
Confidence            766    6777777777777654

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=89.50  E-value=6.5  Score=31.18  Aligned_cols=75  Identities=15%  Similarity=0.058  Sum_probs=62.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      .++..|..-|.+.++.++-.|+..|-.+..+ +..+...+...+++..|..++....++.|+..++..+..-+...
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            3567777888888999999999999988876 46688888899999999999966778899999988888877664

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=89.38  E-value=3.7  Score=47.19  Aligned_cols=193  Identities=15%  Similarity=0.130  Sum_probs=102.6

Q ss_pred             hHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhc-cHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHH
Q 015537          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  281 (405)
Q Consensus       203 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~  281 (405)
                      +..+...+ .+....++..+...+.+++..+|......+.. .+..+..+-.+.-..+...+..-+..+.......+...
T Consensus       567 lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~  645 (2341)
T KOG0891|consen  567 LRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPY  645 (2341)
T ss_pred             HHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhh
Confidence            33344444 66677888888888888888766222211111 11111111111112122222222222222222222211


Q ss_pred             HhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (405)
Q Consensus       282 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (405)
                      + ...+..++..+..++..+...++.+++.++...........+ ..++.+.+.+.+.....-+..+.|+++++.+...-
T Consensus       646 v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~  723 (2341)
T KOG0891|consen  646 V-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGY  723 (2341)
T ss_pred             c-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccce
Confidence            1 234566777778888889999999999999755533333444 56666666666554666778889999999863211


Q ss_pred             HHH-HHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          362 QIQ-VIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       362 ~~~-~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      .+. +....-++..|+..+....    -..+|.++.-.++|+
T Consensus       724 ~v~p~~~~P~ll~~l~~~~~te~----~~~ir~~~v~~~g~~  761 (2341)
T KOG0891|consen  724 VVDPYLDYPELLDILINILKTEQ----SSTIRREAIRLLGLL  761 (2341)
T ss_pred             EecccccChHHHHHHHHHHhHhh----hhHHHHHHHHHhhhh
Confidence            111 1112233344444444332    236788887777764

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.16  E-value=4.5  Score=33.02  Aligned_cols=108  Identities=15%  Similarity=0.090  Sum_probs=73.1

Q ss_pred             CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhc--CchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CC
Q 015537          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITA---GN  359 (405)
Q Consensus       285 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~  359 (405)
                      ....++..+|+++++.-+-.++..++-++..++.  +.+.+.  ..+..++.+++.+.++.+++.++-++..|..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3457788999999998899999999888866532  223333  3888899999988678889999999999975   55


Q ss_pred             HHHHHHHHH---hCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537          360 REQIQVIMH---VHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       360 ~~~~~~l~~---~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n  401 (405)
                      ++..+.+..   .++++.++.++..       ......+.-+|..
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~-------~~~~~~~l~~L~~  140 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD-------SSCPETALDALAT  140 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc-------cccHHHHHHHHHH
Confidence            665555543   3344444454432       1345555555543

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=89.11  E-value=6.6  Score=36.79  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhhH----------
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRCR----------  194 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~i~~~a~~~L~nl~~~~~~~~----------  194 (405)
                      ..-+..|+..|..++....+....++    ...+-.+|.      +.+..-++.|+..++.++......+          
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v  300 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV  300 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence            45678888888888864322222222    122333333      3577889999999999996542211          


Q ss_pred             --HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHH
Q 015537          195 --DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL  267 (405)
Q Consensus       195 --~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l  267 (405)
                        ..+....+++.|.  -..+..+-++..|++.+..+-..-   .......++|.++.+|.+++.-|...|+.++
T Consensus       301 ~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l---~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  301 DVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL---PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             -HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             cHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence              1222333334333  123456778889999998887653   3456678999999999999999999998775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=88.70  E-value=10  Score=31.00  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=72.6

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC--CChHHHHHhhCCC-CHHHHHHHHHHHHHhh---CCC
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLYSP-SDDVREQAVWALGNIA---GDS  190 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~--g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~---~~~  190 (405)
                      .+..+..+|++++ +.-+-.++..+..++..++  .+.+.+.  ..+..++..|+.+ .+.+.+.++.++..|.   .+.
T Consensus        26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4566778888877 7778888877777776532  2334343  3578888888874 5677888888888876   344


Q ss_pred             hhhHHHHHhc---CChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCC
Q 015537          191 PRCRDLVLSQ---GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP  237 (405)
Q Consensus       191 ~~~~~~i~~~---~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~  237 (405)
                      ++....+...   ++++.++.++..   ......++.+|..+....|..-
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~  149 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTF  149 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccc
Confidence            4443333322   234444554422   5666777777777776655433

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=88.58  E-value=1.6  Score=34.67  Aligned_cols=75  Identities=12%  Similarity=0.067  Sum_probs=60.1

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG  147 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~  147 (405)
                      +.+..+.+-|++.++.++..|+..|-.+..........++....++..|+.++....++.++..++..+...+..
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            457888888999999999999999988876543344556778899999999998844489999999988887653

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=88.47  E-value=19  Score=32.77  Aligned_cols=159  Identities=11%  Similarity=0.087  Sum_probs=98.5

Q ss_pred             ccHHHHHhhh-cCC---ChHHHHHHHHHHHHhccCChhHHHHHHhcC-----------ChHHHHHhcC------CCCcch
Q 015537          243 PALPALAHLI-HSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAG-----------VFPRLAEFLM------HPSPSV  301 (405)
Q Consensus       243 ~~l~~L~~ll-~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-----------~l~~L~~lL~------~~~~~v  301 (405)
                      +++..|+.++ ...   .-+++..|+.++..+..++++....+++.-           ....++..|-      +.++--
T Consensus        34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~  113 (312)
T PF04869_consen   34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR  113 (312)
T ss_dssp             EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred             cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence            4455544443 322   467889999999988887777655554421           0112333333      223434


Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhc------------CchHHHHHhhcC----CCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537          302 LIPALRTVGNIVTGDDMQTQCVIEY------------QALPCLLNLLSG----NYKKSIKKEACWTVSNITAGNREQIQV  365 (405)
Q Consensus       302 ~~~a~~~l~nl~~~~~~~~~~~~~~------------g~l~~L~~ll~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (405)
                      .-.|+.++..+...++..++.+..-            ..+..+..+|..    ..+++++-.-...|+--..+++..+..
T Consensus       114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~  193 (312)
T PF04869_consen  114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND  193 (312)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence            4568888999998887776655421            245556666655    336777777666777777789999999


Q ss_pred             HHHh-CcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          366 IMHV-HAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       366 l~~~-~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      +++. ..++.|++......+.  ++-|+.-++..||-|.
T Consensus       194 FL~~~s~l~~Li~~~~~~~~~--~~~VqGL~A~LLGicy  230 (312)
T PF04869_consen  194 FLSEGSNLQSLIEFSNQSSSE--DVLVQGLCAFLLGICY  230 (312)
T ss_dssp             HHCSTTHHHHHHHHHS--TCC--CHHHHHHHHHHHHHHH
T ss_pred             HHcCcchHHHHHHHhhcCCCC--cchHHHHHHHHHHHHH
Confidence            9865 5899999985444433  6789999999998764

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.18  E-value=33  Score=35.06  Aligned_cols=314  Identities=12%  Similarity=0.090  Sum_probs=168.4

Q ss_pred             HHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHH--hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           75 LPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        75 l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      ...+++.++.. |.-++..+++.++-++..- +-.-+.+.  -.+....+.+++..-..-+.+...+..|+-+.....+.
T Consensus       528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~  606 (978)
T KOG1993|consen  528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH  606 (978)
T ss_pred             HHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            56677777765 7788888888888776432 22222222  13344555566654332466777777777765543333


Q ss_pred             HHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCC----ChhhHHHHHhcCChHHHHHhhhC---CCchhHHHHH
Q 015537          152 TKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGD----SPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNA  222 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~----~~~~~~~i~~~~~i~~L~~~l~~---~~~~~~~~~a  222 (405)
                      ..... ..+++.|-.+=+  .+.+-++.+.+.+|.|+...    ++.+..      ++-+++.+-.+   .+..-+.+.+
T Consensus       607 I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~EDg  679 (978)
T KOG1993|consen  607 IAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLEDG  679 (978)
T ss_pred             hhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhhH
Confidence            22111 011222211111  24566788888888888621    221111      22333443311   1223345555


Q ss_pred             HHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHH-HHhccCChhHHHHHHhcCChHHHHHhcCCCCcch
Q 015537          223 TWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV  301 (405)
Q Consensus       223 ~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v  301 (405)
                      .......-.+.+. -....-+++|.+...+..+.+..+. ++..+ +|+.-.+... -.....|++..+..++.+-..+-
T Consensus       680 meLW~~~L~n~~~-l~p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dvr~eg  756 (978)
T KOG1993|consen  680 MELWLTTLMNSQK-LTPELLLLFPHLLYIIEQSTENLPT-VLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDVRNEG  756 (978)
T ss_pred             HHHHHHHHhcccc-cCHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHhhHHH
Confidence            5544444444332 2233357778888887654333222 22222 2333233332 22344588889999997766666


Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHH---
Q 015537          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMH-VHAFSIIV---  376 (405)
Q Consensus       302 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~---  376 (405)
                      ....+.++-.+...++ ........++++.+..-+-.+ +.|.+...-..+++.+.-.+++..-.++. .+-...++   
T Consensus       757 l~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~l  835 (978)
T KOG1993|consen  757 LQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAML  835 (978)
T ss_pred             HHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHH
Confidence            7778888877776555 444456677888777665433 25677777777778777777877766663 33222222   


Q ss_pred             -HHHhcccccchhhhHHHHHHHHHh
Q 015537          377 -AFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       377 -~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                       ..=-.-.+.-++|+-||--+.|++
T Consensus       836 i~~WI~~~~~I~~~k~rKl~~Lals  860 (978)
T KOG1993|consen  836 IGNWILLFDHINHPKDRKLNTLALS  860 (978)
T ss_pred             HHHHHHHcccCCCHHHhhHHHHHHH
Confidence             211111222235677776666654

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=88.01  E-value=1.8  Score=33.91  Aligned_cols=74  Identities=9%  Similarity=0.001  Sum_probs=56.9

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHH-HHHHHHHHHHHHhc
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-LQFEAAWALTNIAS  146 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~-~~~~a~~~L~ni~~  146 (405)
                      +.+..+.+.|++.++.+|..|+..+-.+......+...++...+++..|..++....... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            457888888999999999999999988876542344456677889999999998765333 88888887777654

Unpublished observations. Domain of unknown function.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=87.71  E-value=22  Score=34.11  Aligned_cols=302  Identities=12%  Similarity=0.115  Sum_probs=128.1

Q ss_pred             HHHHHHhhcCC---ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--
Q 015537           75 LPVMVAGVWSN---DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--  149 (405)
Q Consensus        75 l~~l~~~l~s~---~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~--  149 (405)
                      +..|...+..+   ..+-..+|+.-+...+...-.+....++ ..++..+....+++++|..-.....+++.+.....  
T Consensus        28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il-~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~  106 (435)
T PF03378_consen   28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEIL-QHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA  106 (435)
T ss_dssp             HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHH-HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence            56666666542   2333444443333332222122223332 22455555556666657665555444444433211  


Q ss_pred             -hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537          150 -EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP--RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (405)
Q Consensus       150 -~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~--~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l  226 (405)
                       ...-.-++...+|.+..+|+.+-.+....+...|+.+....+  ..-+..  ...+++|+.-- -.....-.-..+..|
T Consensus       107 ~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y--~~L~~~Ll~p~-lWe~~gniPalvrLL  183 (435)
T PF03378_consen  107 DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAY--KQLFPPLLSPA-LWERRGNIPALVRLL  183 (435)
T ss_dssp             GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTT--GGGHHHHTSGG-GGGSTTTHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHH--HHHHHHHcCcc-hhccCCCcCcHHHHH
Confidence             111123455778999999998777777777777777764333  111110  11222222211 011111112222333


Q ss_pred             HHhhcCCCCC--ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh-HHHHHHhcCChHHHHHhcC-CCCcchH
Q 015537          227 SNFCRGKPQP--PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVFPRLAEFLM-HPSPSVL  302 (405)
Q Consensus       227 ~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~L~~lL~-~~~~~v~  302 (405)
                      ..+....+..  ....+.+++...-+++.+...+  ..+...|..+...-+. ..+..+ ..++..+..-|+ +..+...
T Consensus       184 ~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~  260 (435)
T PF03378_consen  184 QAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFV  260 (435)
T ss_dssp             HHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHH
T ss_pred             HHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHH
Confidence            3333222111  1123356666666777665322  3344444444433221 111111 123334444443 4444555


Q ss_pred             HHHHHHHhHhhc--CChhhHHHH--HhcCchHHHHHh-----hcCCCchhHHHHHHHHHHHHhcCCHHHHHH--HHHhCc
Q 015537          303 IPALRTVGNIVT--GDDMQTQCV--IEYQALPCLLNL-----LSGNYKKSIKKEACWTVSNITAGNREQIQV--IMHVHA  371 (405)
Q Consensus       303 ~~a~~~l~nl~~--~~~~~~~~~--~~~g~l~~L~~l-----l~~~~~~~v~~~a~~~L~nl~~~~~~~~~~--l~~~~~  371 (405)
                      ...+..++.++.  |.+...+.+  ++.|+...+..-     +..-..+.-||.++-.+.++...++.....  -.-...
T Consensus       261 ~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~l  340 (435)
T PF03378_consen  261 KRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPL  340 (435)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHH
Confidence            555555554442  233332222  234555444442     122113456788888888877654432222  112345


Q ss_pred             HHHHHHHHhccc
Q 015537          372 FSIIVAFFFMFL  383 (405)
Q Consensus       372 i~~L~~lL~~~~  383 (405)
                      +..|+.++....
T Consensus       341 l~~Ll~ll~~p~  352 (435)
T PF03378_consen  341 LEALLKLLERPP  352 (435)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHcCCc
Confidence            666777776543

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=87.43  E-value=8.7  Score=30.04  Aligned_cols=75  Identities=12%  Similarity=-0.017  Sum_probs=61.3

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhC--CCchhHHHHHHHHHHHhhcCCC
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~--~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                      ++..|-.-|.++++.++..|+..|-.+...+ +.++..+....++..+++++..  ..+..++..++..+.......+
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            5677778888899999999999999998776 4477888877888889999855  4588999999999888877653

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1988 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.94  E-value=24  Score=36.28  Aligned_cols=251  Identities=14%  Similarity=0.124  Sum_probs=150.7

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~  155 (405)
                      ..+=+.++++....|.+++..+-++-...  | -..++.+ .+=.|.+....++ -.+|...+++...--    .+...+
T Consensus        27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~--P-fpifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g----~hln~v   97 (970)
T KOG1988|consen   27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY--P-FPIFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSG----KHLNKV   97 (970)
T ss_pred             HHHhhcccccccccchHHHHHHHHHHhhC--C-chhhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhcc----ccchhh
Confidence            44555777777778888887777775332  2 2233322 2445666666777 688888887777322    222223


Q ss_pred             Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537          156 ID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       156 ~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                      .. ...+..+..+..+.|+.-+..++..+|.++.--|       +.+....++..-..+.+.--.+.++.+...++....
T Consensus        98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk  170 (970)
T KOG1988|consen   98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK  170 (970)
T ss_pred             hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence            22 1334444455567899999999999999864433       334455566654355555556777777777765432


Q ss_pred             CCChhhhhccHHHHHhhhcCCC--hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhH
Q 015537          235 QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGN  311 (405)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~n  311 (405)
                          ....++...+..++...|  +......+.+++.|......      ...+......++ +++..+....-+.++.+
T Consensus       171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~  240 (970)
T KOG1988|consen  171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTN  240 (970)
T ss_pred             ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence                122234445555565544  45667777888888644321      112334556666 34444555566777777


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      ++...-     ..-.+-++.+.+++..+....++..+.|.+-+++.
T Consensus       241 Lasrs~-----~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~  281 (970)
T KOG1988|consen  241 LASRSL-----VAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK  281 (970)
T ss_pred             HHHHHH-----HHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence            774332     12235677888888855467788889999988864

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=86.82  E-value=27  Score=32.65  Aligned_cols=92  Identities=22%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCCh
Q 015537          161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF  238 (405)
Q Consensus       161 i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~  238 (405)
                      +.+++.-|.+ ....++..++--|+.-+.+ +.++..+..+|....+++.+...++..+...++.++..+...+ +....
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            5566665653 4567898888888888875 4588999999999999999955555435555555555544443 33333


Q ss_pred             hhhhccHHHHHhhhc
Q 015537          239 DQVSPALPALAHLIH  253 (405)
Q Consensus       239 ~~~~~~l~~L~~ll~  253 (405)
                      ......+..++.++.
T Consensus       102 ~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhchhHHHHHHHHhc
Confidence            233455666677766

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=86.74  E-value=3.4  Score=32.35  Aligned_cols=74  Identities=14%  Similarity=0.083  Sum_probs=57.1

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCch-HHHHhcCcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcC
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASG  147 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~l~~Li~lL~~~--~~~~~~~~a~~~L~ni~~~  147 (405)
                      +.+..+.+.|+++++.+|..|+..|-.+.... ..+. ..+....++..|+.++...  .++.++..++..+.+.+..
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNc-g~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNC-GKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC-ChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45788888899999999999999998887654 3434 4555558888899999763  3478999999888877653

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.62  E-value=58  Score=36.87  Aligned_cols=273  Identities=15%  Similarity=0.115  Sum_probs=139.0

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      +..++..+...++..+..+...+..++..-+..+--    .+....+++-|.+..++-.|.--..+++-+-......-..
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~----a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFV----ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            455566677778888888888888876543222211    2235556666665543554544444444443321111100


Q ss_pred             HHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC--chhHHHHHHHHHH----
Q 015537          155 VIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLS----  227 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~--~~~~~~~a~~~l~----  227 (405)
                      -.....+..+..+..++ +|.|+.-++.++.-+...........++. .+..+..++...+  ..++....-.++.    
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence            11123456677777764 56999999999998886553333332222 2333334443322  4455555555444    


Q ss_pred             --HhhcCC-----CCCC---hhh-hhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC
Q 015537          228 --NFCRGK-----PQPP---FDQ-VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (405)
Q Consensus       228 --~l~~~~-----~~~~---~~~-~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  296 (405)
                        .+.+.-     ++..   ... ....+-...-++.++|+.++..+..++-++--..+....   -.-+++.+..+|.+
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence              443321     1221   111 123333344455667899999999998887544332111   11234566666655


Q ss_pred             CCcchHHHHHHHHhHhhcCCh-----------------hhHH-HHH-hcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 015537          297 PSPSVLIPALRTVGNIVTGDD-----------------MQTQ-CVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (405)
Q Consensus       297 ~~~~v~~~a~~~l~nl~~~~~-----------------~~~~-~~~-~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (405)
                      ...-.+...+.++.-+..+..                 ...+ .+. +.|+=-.+..++....+.+..+....++.++
T Consensus      1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~ 1187 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRM 1187 (2067)
T ss_pred             hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            444444444444433333221                 0011 111 3444455555665554666777777777774

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=86.42  E-value=11  Score=29.58  Aligned_cols=74  Identities=16%  Similarity=0.091  Sum_probs=58.6

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchh-HHHHHHHHHHHhhcCC
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSNFCRGK  233 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~-~~~~a~~~l~~l~~~~  233 (405)
                      ++..|..-|.++++.++..|+..|-.+... ++.++..+...+++..|..++....+.. ++..++..+..-....
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            456677778888999999999999999876 4668888888889999999886555434 8888888887776654

Unpublished observations. Domain of unknown function.

>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []

Probab=86.35  E-value=0.82  Score=27.08  Aligned_cols=38  Identities=32%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             HhhhhcCCCCCchHHhhhhhHHHHHHHHHhhhHHHHhhh
Q 015537           11 SRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR   49 (405)
Q Consensus        11 ~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R   49 (405)
                      +|...||+..++.+..+|| +...+.-|.+|-+.++..|
T Consensus         2 PR~sqYK~~~~~~~Q~eRR-~~~Le~QK~kR~d~~~~aR   39 (40)
T PF11538_consen    2 PRLSQYKNKGSALDQEERR-REFLERQKNKRLDYVNHAR   39 (40)
T ss_dssp             TTCSCTT-TTTSCSHHHHH-HHHHHHHHSHHSHHHHHHH
T ss_pred             ccHHHhhcccchHhHHHHH-HHHHHHHHHHhHHHHHhcc
Confidence            5777899865555554444 4455777888877777665

Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=86.11  E-value=30  Score=32.51  Aligned_cols=218  Identities=12%  Similarity=0.053  Sum_probs=114.9

Q ss_pred             CHHHHHHHHHHHHHhhCCChhhHHHHHhc---CChHHHHHhhh-CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHH
Q 015537          172 SDDVREQAVWALGNIAGDSPRCRDLVLSQ---GGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (405)
Q Consensus       172 ~~~i~~~a~~~L~nl~~~~~~~~~~i~~~---~~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~  247 (405)
                      +..+..+|+.+|+.+..+..-. ..+-..   -.+...+..+. ...+..+....+|+|+.--.............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~-~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIV-STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHH-hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            6789999999999998654322 222111   12344455552 344667888888888753322111111222233333


Q ss_pred             HHhhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCCCCcchHHHHHHHHhHhhc--CCh-hhH--
Q 015537          248 LAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVT--GDD-MQT--  320 (405)
Q Consensus       248 L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~~-~~~--  320 (405)
                      +..+-+ -+...+..+.+.++.++....+...  .... -.++.++..+-+....++..|...+-.+..  +.+ ...  
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~  215 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS  215 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence            333332 3457788899999999987766532  2222 367888888877777777765555443331  221 111  


Q ss_pred             -HHHHhc----C-----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhh
Q 015537          321 -QCVIEY----Q-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAI  390 (405)
Q Consensus       321 -~~~~~~----g-----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~  390 (405)
                       ....+.    +     +.+.|..++.+. +...----.|..--+.-+++.    +-.-..+...+.+.....+. .++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~----~~~w~~~n~wL~v~e~cFn~-~d~~  289 (372)
T PF12231_consen  216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSR----LDSWEHLNEWLKVPEKCFNS-SDPQ  289 (372)
T ss_pred             HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCch----hhccHhHhHHHHHHHHHhcC-CCHH
Confidence             112222    2     334467777774 333333344544444334332    22334455555555433333 2457


Q ss_pred             HHHHHHHH
Q 015537          391 IYKLAIWL  398 (405)
Q Consensus       391 vr~~A~~a  398 (405)
                      +|.+|..|
T Consensus       290 ~k~~A~~a  297 (372)
T PF12231_consen  290 VKIQAFKA  297 (372)
T ss_pred             HHHHHHHH
Confidence            88877654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=85.46  E-value=15  Score=30.44  Aligned_cols=83  Identities=19%  Similarity=0.247  Sum_probs=61.8

Q ss_pred             hhccHHHHHhhhcCCChHHHHHHHHHHHHhccC-ChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhh
Q 015537          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (405)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  319 (405)
                      ....+|.+++-|...+...+--|...+..|... ..+.+-.++ ..++..+...|.+.++++...++.+|..++...+..
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v  114 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV  114 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            468899999999888877777777777777665 444333222 356777888889999999999999999998766644


Q ss_pred             HHHHH
Q 015537          320 TQCVI  324 (405)
Q Consensus       320 ~~~~~  324 (405)
                      -+.++
T Consensus       115 G~aLv  119 (183)
T PF10274_consen  115 GEALV  119 (183)
T ss_pred             hHHHH
Confidence            44443

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=85.46  E-value=42  Score=38.36  Aligned_cols=213  Identities=11%  Similarity=0.060  Sum_probs=117.1

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh
Q 015537          164 FVKLLYSPSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (405)
Q Consensus       164 L~~lL~~~~~~i~~~a~~~L~nl~~~~~---~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  240 (405)
                      ++..-.+++..+...|+..|..++...-   +....-.+...+.++..++.+..+.+++..++.|+.++..........-
T Consensus      1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSG 1221 (1780)
T PLN03076       1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSG 1221 (1780)
T ss_pred             HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcC
Confidence            4444344577788888888888874221   1111122345678888888778889999999999998877642211112


Q ss_pred             hhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHh--cC----ChHHHHHhcCCC-CcchHHHHHHHHhHhh
Q 015537          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AG----VFPRLAEFLMHP-SPSVLIPALRTVGNIV  313 (405)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~----~l~~L~~lL~~~-~~~v~~~a~~~l~nl~  313 (405)
                      ...++..+.......++.+...+..++..+....-   ..+..  .+    .+..+..+.... +.++-..|+..|.+++
T Consensus      1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076       1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred             cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence            22233333333334567777777777776653211   11111  12    233333333332 3555566666666442


Q ss_pred             c----CCh-----------------------hhH-----HHHHhcCchHHHH---HhhcCCCchhHHHHHHHHHHHHhc-
Q 015537          314 T----GDD-----------------------MQT-----QCVIEYQALPCLL---NLLSGNYKKSIKKEACWTVSNITA-  357 (405)
Q Consensus       314 ~----~~~-----------------------~~~-----~~~~~~g~l~~L~---~ll~~~~~~~v~~~a~~~L~nl~~-  357 (405)
                      .    +.-                       ...     ........+|.|.   .+..++ +++||..|.-+|-.+.. 
T Consensus      1299 ~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~ 1377 (1780)
T PLN03076       1299 TKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRN 1377 (1780)
T ss_pred             HHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Confidence            1    000                       000     0000122344444   445566 89999999999888875 


Q ss_pred             -C---CHHHHHHHHHhCcHHHHHHHHhc
Q 015537          358 -G---NREQIQVIMHVHAFSIIVAFFFM  381 (405)
Q Consensus       358 -~---~~~~~~~l~~~~~i~~L~~lL~~  381 (405)
                       |   +++....+++ +++.++++.+..
T Consensus      1378 yG~~Fs~~~W~~if~-~VLFPIFd~l~~ 1404 (1780)
T PLN03076       1378 HGHLFSLPLWERVFE-SVLFPIFDYVRH 1404 (1780)
T ss_pred             hhccCCHHHHHHHHH-HHHHHHHHHHHH
Confidence             2   4555666665 666677666653

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.31  E-value=73  Score=36.16  Aligned_cols=211  Identities=17%  Similarity=0.087  Sum_probs=106.3

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 015537          120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVL  198 (405)
Q Consensus       120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~  198 (405)
                      .++..|...+ |..+..+..+++.++..-+.  ..++ .+..+.++.-+.+ .++..|..-.-++|.+-.+....-..-.
T Consensus       880 l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh  955 (2067)
T KOG1822|consen  880 LIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH  955 (2067)
T ss_pred             HHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence            3344444444 66666666666666553111  1111 1234455554544 4554454444555555432211111111


Q ss_pred             hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC-----
Q 015537          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-----  273 (405)
Q Consensus       199 ~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-----  273 (405)
                      ....+..++.+..++.++.|++.++.++..+...........+...+..+..++-+..+ ...+.--+++....+     
T Consensus       956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~~~ 1034 (2067)
T KOG1822|consen  956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDDED 1034 (2067)
T ss_pred             cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchhHH
Confidence            12235566666656667799999999999988876444455666777766666643221 222222222222111     


Q ss_pred             ------------Ch--hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC
Q 015537          274 ------------TN--DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN  339 (405)
Q Consensus       274 ------------~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~  339 (405)
                                  +.  +.... +..-.+-...-+++++++.++..++.++.++-...+.+..   -.-+++.+..++.++
T Consensus      1035 alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1035 ALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS 1110 (2067)
T ss_pred             HHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch
Confidence                        11  11111 1111222333345677888999999999888765543221   112556666666655

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=85.02  E-value=32  Score=31.81  Aligned_cols=213  Identities=15%  Similarity=0.077  Sum_probs=108.1

Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-C
Q 015537          158 HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P  234 (405)
Q Consensus       158 ~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~  234 (405)
                      ..++..|..++.. .++......+.+++.=+... ...     ...++..+.+=+ .++.+.+++.-+..+....... .
T Consensus        21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl-~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGL-KDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHhhccC
Confidence            3456667777765 56666666766666543111 111     111233444444 5556668888777777777622 2


Q ss_pred             CCChhhhhccHHHHHhhhc----CCChHHH---HHHHHHHHHhccCChhHHHH--H------HhcC----ChHHHHHhcC
Q 015537          235 QPPFDQVSPALPALAHLIH----SNDDEVL---TDACWALSYLSDGTNDKIQA--V------IEAG----VFPRLAEFLM  295 (405)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~----~~d~~v~---~~a~~~l~~l~~~~~~~~~~--~------~~~~----~l~~L~~lL~  295 (405)
                      .........++|.|...++    ++-+...   ..++.++..+.....+....  .      .+..    .-+.+..-+ 
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl-  173 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL-  173 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc-
Confidence            2334445677777777763    2211111   11111111121111111111  0      0000    001111111 


Q ss_pred             CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHH
Q 015537          296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSI  374 (405)
Q Consensus       296 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~  374 (405)
                       .+++.....++++..+..+.+.....-....+-..++.++.++. .+.+|+.|.-++..+...+++.    +...++..
T Consensus       174 -~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~  248 (339)
T PF12074_consen  174 -ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISG  248 (339)
T ss_pred             -CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHH
Confidence             34445566777777766544322211112234566777776663 6889999999999999887774    44556666


Q ss_pred             HHHHHhcc
Q 015537          375 IVAFFFMF  382 (405)
Q Consensus       375 L~~lL~~~  382 (405)
                      +.+.|...
T Consensus       249 l~~~l~~~  256 (339)
T PF12074_consen  249 LWKWLSSS  256 (339)
T ss_pred             HHHHHHhc
Confidence            66666544

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=84.73  E-value=6.1  Score=31.39  Aligned_cols=74  Identities=15%  Similarity=0.096  Sum_probs=61.3

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      ++..|..-|.+.++.++..|+..|-.+..+. ..++..+...+++..|.+++....+..|+..++..+...+...
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence            5667777778889999999999999988654 4577888888899999999955578999999999888887765

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=84.66  E-value=27  Score=30.63  Aligned_cols=117  Identities=24%  Similarity=0.280  Sum_probs=65.6

Q ss_pred             hccHHHHHhhhcCCChH--------HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhH
Q 015537          242 SPALPALAHLIHSNDDE--------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGN  311 (405)
Q Consensus       242 ~~~l~~L~~ll~~~d~~--------v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~n  311 (405)
                      ..++|.++.++..++..        +-...-.+++.++.            |=++.+..++.++  +.-++..|+.++..
T Consensus        72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~  139 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF  139 (249)
T ss_pred             hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            36888999999765531        22222333333444            4455566666554  34688899999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHh-hcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHhCcHHHHH
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNL-LSGNYKKSIKKEACWTVSNITA----GNREQIQVIMHVHAFSIIV  376 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~l-l~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~L~  376 (405)
                      ++...+..++.+++.  +..++.. +... +..+   --+.+++++.    .--..++.+.+.|+++.-+
T Consensus       140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~-~~~~---~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~  203 (249)
T PF06685_consen  140 LVHEGPISREEVIQY--FRELLNYFLERN-PSFL---WGSLVADICDLYPEELLPEIRKAFEDGLVDPSF  203 (249)
T ss_pred             HHHcCCCCHHHHHHH--HHHHHHHHhccC-chHH---HHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence            998777666655542  2222222 3222 2221   1223344443    2344467777888887644

The function of this family is unknown.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=84.49  E-value=3.9  Score=32.29  Aligned_cols=74  Identities=7%  Similarity=-0.013  Sum_probs=56.6

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhc
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-----EDYPQLQFEAAWALTNIAS  146 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~-----~~~~~~~~~a~~~L~ni~~  146 (405)
                      +++..+.+.|++.++.++..|+..|-.+...-......++...+++..|++++..     ..++.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4578888899999999999999998888754423344567778899999999963     1237888888888877654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=84.18  E-value=21  Score=32.99  Aligned_cols=217  Identities=18%  Similarity=0.119  Sum_probs=108.1

Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 015537          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (405)
Q Consensus       113 ~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~  192 (405)
                      +...++..|..++....++.....++.+++.-...-    ..-+...++..+..-+++..+.+|..-+..++.+....+.
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            444567778888876554666666666666543321    0111224567777778877777999888888888751110


Q ss_pred             hHHHHHhcCChHHHHHhhh---CCCchhHH---HHHHHHHHHhhcCC-CCCChh------hhhccHHH-H--HhhhcC-C
Q 015537          193 CRDLVLSQGGLVPLLAQLN---GQPKLSML---RNATWTLSNFCRGK-PQPPFD------QVSPALPA-L--AHLIHS-N  255 (405)
Q Consensus       193 ~~~~i~~~~~i~~L~~~l~---~~~~~~~~---~~a~~~l~~l~~~~-~~~~~~------~~~~~l~~-L--~~ll~~-~  255 (405)
                      ....-.-..+++.|+..+.   .++-....   ..++.++..++... +.....      ...+-=|. +  -+++.. .
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~  174 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA  174 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence            0011111235666776663   12211111   11111111121111 000000      00000000 0  012222 3


Q ss_pred             ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 015537          256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL  333 (405)
Q Consensus       256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~  333 (405)
                      +++-....+.++..+..+.......-....+-..++.++.+.  .+.+|..|+.++..+...++..    +...++..+-
T Consensus       175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~  250 (339)
T PF12074_consen  175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW  250 (339)
T ss_pred             CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence            445555666666665544332211111223456788888777  8899999999999999887763    2223444555


Q ss_pred             Hhhc
Q 015537          334 NLLS  337 (405)
Q Consensus       334 ~ll~  337 (405)
                      .++.
T Consensus       251 ~~l~  254 (339)
T PF12074_consen  251 KWLS  254 (339)
T ss_pred             HHHH
Confidence            5554

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=83.97  E-value=32  Score=31.00  Aligned_cols=195  Identities=11%  Similarity=0.084  Sum_probs=128.6

Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC---Chhhh---hccHHHHHhhhcCCChHHHHHHHHHHH
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP---PFDQV---SPALPALAHLIHSNDDEVLTDACWALS  268 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~---~~~l~~L~~ll~~~d~~v~~~a~~~l~  268 (405)
                      ..+...|.+..++..+ ...+.+.+..++....++-+..-..   ....+   ..++..++..-.. .+++...+-..+.
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            4556778888888888 7778888999999999998765221   12222   2333333333111 1444433333333


Q ss_pred             HhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcC----chHHHHHhhcCCCchhH
Q 015537          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ----ALPCLLNLLSGNYKKSI  344 (405)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g----~l~~L~~ll~~~~~~~v  344 (405)
                      ... ..+...+.+..+.-+......+..+.-++..-|..+.-.+.+........++..+    +.++--.++.++ +.-+
T Consensus       151 Eci-rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt  228 (342)
T KOG1566|consen  151 ECI-RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT  228 (342)
T ss_pred             HHH-hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence            332 3344556677777788888888888888888899999888876665555555444    255577788888 9999


Q ss_pred             HHHHHHHHHHHhcC--CHHH-HHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537          345 KKEACWTVSNITAG--NREQ-IQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL  398 (405)
Q Consensus       345 ~~~a~~~L~nl~~~--~~~~-~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a  398 (405)
                      ++.+...++.+..+  +... .+++-+..-+..++.+|...+..     ++-+|-..
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskn-----iQ~eAFhv  280 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKN-----IQLEAFHV  280 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcccc-----chHHHHHH
Confidence            99999999999863  3322 34444567788889989776544     77776543

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=83.70  E-value=15  Score=26.95  Aligned_cols=92  Identities=12%  Similarity=0.101  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH
Q 015537           88 GVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (405)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~  166 (405)
                      +++..|+..+..=+... --....+. ..+++..|++.++.++ ...+..++..|..++.. +.....+.+.|+...|.+
T Consensus         2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~k   78 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSK   78 (98)
T ss_pred             hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHH
Confidence            34555554443222221 22223333 4567888888888887 56889999999998887 777778888899998777


Q ss_pred             hhCCCCHHHHHHHHHH
Q 015537          167 LLYSPSDDVREQAVWA  182 (405)
Q Consensus       167 lL~~~~~~i~~~a~~~  182 (405)
                      +=...++..+...-..
T Consensus        79 lr~~~~~~~~~~id~i   94 (98)
T PF14726_consen   79 LRPNVEPNLQAEIDEI   94 (98)
T ss_pred             HHhcCCHHHHHHHHHH
Confidence            7666666665544433

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=83.41  E-value=31  Score=32.32  Aligned_cols=154  Identities=18%  Similarity=0.076  Sum_probs=96.3

Q ss_pred             HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc----------CCChHHHHHHHHHHHHhccC
Q 015537          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------SNDDEVLTDACWALSYLSDG  273 (405)
Q Consensus       204 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~----------~~d~~v~~~a~~~l~~l~~~  273 (405)
                      ..+...|.+......+..++.++.-|++....-.-......+..|+.+..          ..|..+...++.+|.|+..+
T Consensus        48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~  127 (532)
T KOG4464|consen   48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH  127 (532)
T ss_pred             HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence            44556664444556666777777778777533333333444444444431          23568999999999999999


Q ss_pred             ChhHHHHHHhcCChHHHHHhcCC-----CCcchHHHHHHHHhHhhcC-ChhhHHHHHhcCchHHHHHhhcCCC-------
Q 015537          274 TNDKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTG-DDMQTQCVIEYQALPCLLNLLSGNY-------  340 (405)
Q Consensus       274 ~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~g~l~~L~~ll~~~~-------  340 (405)
                      +....+...+......+.+.+..     -...+...=++.|--+..- .+...+.+.+.++++.+-+++.+..       
T Consensus       128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n  207 (532)
T KOG4464|consen  128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEIN  207 (532)
T ss_pred             cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence            98877777877776666666521     1112333334444333332 3455566678899999999998641       


Q ss_pred             -------chhHHHHHHHHHHHHhc
Q 015537          341 -------KKSIKKEACWTVSNITA  357 (405)
Q Consensus       341 -------~~~v~~~a~~~L~nl~~  357 (405)
                             +....-++..++.|++.
T Consensus       208 ~~~l~pqe~n~a~EaLK~~FNvt~  231 (532)
T KOG4464|consen  208 VPPLNPQETNRACEALKVFFNVTC  231 (532)
T ss_pred             CCCCCHHHHHHHHHHHHHHhheee
Confidence                   12355678888888886

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=82.32  E-value=13  Score=29.32  Aligned_cols=74  Identities=18%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchh---HHHHHHHHHHHhhcCC
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLS---MLRNATWTLSNFCRGK  233 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~---~~~~a~~~l~~l~~~~  233 (405)
                      ++..|..-|.+.++.++..|+..|-.+..++ +.++..+....++..|..++.......   |+..+...+.......
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            4566777788889999999999999988765 678888888888889999886544433   8888887777766654

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=82.21  E-value=3.8  Score=35.26  Aligned_cols=79  Identities=22%  Similarity=0.213  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhCC-------ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCC
Q 015537          132 QLQFEAAWALTNIASGTSEHTKVVIDHG-------AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CRDLVLSQGG  202 (405)
Q Consensus       132 ~~~~~a~~~L~ni~~~~~~~~~~~~~~g-------~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~-~~~~i~~~~~  202 (405)
                      .-|..|+.+|+.++-. +.+.+.++..+       .+..|+++|.. .++-.++.|+-.|.+++..+.. ++....+.+.
T Consensus       139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            4589999999999876 45555555544       34556666654 6888999999999999976654 4456667888


Q ss_pred             hHHHHHhhh
Q 015537          203 LVPLLAQLN  211 (405)
Q Consensus       203 i~~L~~~l~  211 (405)
                      +..|+.++.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999984

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=82.15  E-value=36  Score=30.19  Aligned_cols=181  Identities=19%  Similarity=0.178  Sum_probs=103.8

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhhHHHHHhcCChHHHHHhhhCCC---chhHHHHHHHHHHH
Q 015537          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-------PRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNATWTLSN  228 (405)
Q Consensus       159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-------~~~~~~i~~~~~i~~L~~~l~~~~---~~~~~~~a~~~l~~  228 (405)
                      |+-+.+++-+.+  +...+.++..|..+....       .+.|-.+.-.+.+|.++..+.+..   .......++..|+.
T Consensus        64 Glq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~  141 (262)
T PF14225_consen   64 GLQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ  141 (262)
T ss_pred             hHHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence            444444555554  344566777777776321       112223333345666666663333   12456677788999


Q ss_pred             hhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHH
Q 015537          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (405)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  308 (405)
                      +|...+....   ..++.....--..+..+....++..|..-.  .++.     +...+..++.+|.++.+.++...+.+
T Consensus       142 ~a~~~~~~~L---a~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~i  211 (262)
T PF14225_consen  142 VAEAQGLPNL---ARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPDH-----EFQILTFLLGLLENGPPWLRRKTLQI  211 (262)
T ss_pred             HHHhCCCccH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cchh-----HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            9965432211   122222222111233555566665554422  1121     12345689999999889999999999


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       309 l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      |..+....+....  ...+++.++.++++++    ...+|.-+|-++..
T Consensus       212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence            9999976654332  5566899999999877    45566666665543

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=81.98  E-value=13  Score=39.82  Aligned_cols=235  Identities=18%  Similarity=0.186  Sum_probs=128.9

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHH--------HHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF--------VEFLLREDYPQLQFEAAWALTNIAS  146 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~L--------i~lL~~~~~~~~~~~a~~~L~ni~~  146 (405)
                      +..|++.+-+..++.|+-+..+++.++..+-...-...++..++..+        =++....-...+++.++|+|+.+..
T Consensus        79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~  158 (1549)
T KOG0392|consen   79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLK  158 (1549)
T ss_pred             HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHH
Confidence            67788888889999999999999999865422222222222222111        1122211124689999999999877


Q ss_pred             CCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhhCCCchhHHHHHHH
Q 015537          147 GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATW  224 (405)
Q Consensus       147 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~L~~~l~~~~~~~~~~~a~~  224 (405)
                      +..+...    ...+..+.+++..++.+++.-.+-.+.....   ..++.+..  ..+++..+.-+ .+.+..++..++.
T Consensus       159 ~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa~  230 (1549)
T KOG0392|consen  159 HMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAAQ  230 (1549)
T ss_pred             hhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHHH
Confidence            5332211    1245677777777766666554444433221   11122110  11334444445 6677888888888


Q ss_pred             HHHHhhcCCCCCChhhhhccHHHHHhhhcCCCh--HHHHHHHHHHHHhccCCh--h-HHHHHHhcCChHHHHHhcCCCCc
Q 015537          225 TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD--EVLTDACWALSYLSDGTN--D-KIQAVIEAGVFPRLAEFLMHPSP  299 (405)
Q Consensus       225 ~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~--~v~~~a~~~l~~l~~~~~--~-~~~~~~~~~~l~~L~~lL~~~~~  299 (405)
                      ++.-.....+......+..++..+...+..-|.  .-.......+..++....  + ..+.-.+.|++|.+..++.+.=.
T Consensus       231 ~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~  310 (1549)
T KOG0392|consen  231 FLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTIS  310 (1549)
T ss_pred             HhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHH
Confidence            887776654333333334444444444332221  001111122233332221  1 11122335899999999988878


Q ss_pred             chHHHHHHHHhHhhcCCh
Q 015537          300 SVLIPALRTVGNIVTGDD  317 (405)
Q Consensus       300 ~v~~~a~~~l~nl~~~~~  317 (405)
                      .++..++..+..+....+
T Consensus       311 sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  311 SVRRAALETLAMLLEADD  328 (1549)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            888889988888876443

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=81.74  E-value=28  Score=36.08  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=72.9

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~  155 (405)
                      ..+...+.++++..-...+..+..+..-+.-++..   ...-++.-..-.+..- ..+......+|..++..+++....+
T Consensus       444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l  519 (727)
T PF12726_consen  444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKEL  519 (727)
T ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            44555566677766666666666665444222222   1111222222222222 4677778889999999888887777


Q ss_pred             Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 015537          156 ID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAG  188 (405)
Q Consensus       156 ~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~  188 (405)
                      .. .+....++.++-+++.++.+.|...|....+
T Consensus       520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d  553 (727)
T PF12726_consen  520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD  553 (727)
T ss_pred             HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence            65 5889999999999999999999999999885

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=80.86  E-value=7.2  Score=40.36  Aligned_cols=122  Identities=10%  Similarity=0.103  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC-CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhh
Q 015537          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL  336 (405)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll  336 (405)
                      .++..+.-+++++|-..+...+     ..+|.|++-|.. ....++...+.+++.+|..-..     +-...+|.+-..|
T Consensus       946 ~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  946 KVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAASL 1015 (1529)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHHh
Confidence            4667777889998877665544     346888888854 4556777777788888754322     2225789999999


Q ss_pred             cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcH--HHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537          337 SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF--SIIVAFFFMFLHFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       337 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i--~~L~~lL~~~~~~~~~~~vr~~A~~al~n  401 (405)
                      .++ ++-||+.+...|+++...     ..+--.|.+  ..+..++..      +++||+-|-+.++.
T Consensus      1016 ~Dp-~~iVRrqt~ilL~rLLq~-----~~vKw~G~Lf~Rf~l~l~D~------~edIr~~a~f~~~~ 1070 (1529)
T KOG0413|consen 1016 CDP-SVIVRRQTIILLARLLQF-----GIVKWNGELFIRFMLALLDA------NEDIRNDAKFYISE 1070 (1529)
T ss_pred             cCc-hHHHHHHHHHHHHHHHhh-----hhhhcchhhHHHHHHHHccc------CHHHHHHHHHHHHH
Confidence            999 999999999999999642     222223332  233333322      24899988888764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=80.76  E-value=13  Score=38.17  Aligned_cols=159  Identities=17%  Similarity=0.158  Sum_probs=99.1

Q ss_pred             CchHHHHhcCcHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhcCCchhHHHHHhC--------CChHHHHHhhCC-
Q 015537          107 PPIEEVIRSGVVPRFVEFLLREDY-------PQLQFEAAWALTNIASGTSEHTKVVIDH--------GAVPIFVKLLYS-  170 (405)
Q Consensus       107 ~~~~~~~~~g~l~~Li~lL~~~~~-------~~~~~~a~~~L~ni~~~~~~~~~~~~~~--------g~i~~L~~lL~~-  170 (405)
                      +..+.+...+++..++++...+..       .++...|+.+|.-+..- |..+..+...        .+|..++..-.- 
T Consensus       592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~  670 (1516)
T KOG1832|consen  592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGS  670 (1516)
T ss_pred             hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccc
Confidence            445567777788888888765421       35667777777776666 5555444321        145544443322 


Q ss_pred             ---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh--HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccH
Q 015537          171 ---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL--VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL  245 (405)
Q Consensus       171 ---~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i--~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l  245 (405)
                         .+++++..|+.+|-|.....|.++...+..-+-  ..=-..+...+......+.+.-+++-.++         ..++
T Consensus       671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndGI  741 (1516)
T KOG1832|consen  671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDGI  741 (1516)
T ss_pred             ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------CccH
Confidence               489999999999999988877666544321000  00000111223344566666667777666         3678


Q ss_pred             HHHHhhhcCCC-----hHHHHHHHHHHHHhccCCh
Q 015537          246 PALAHLIHSND-----DEVLTDACWALSYLSDGTN  275 (405)
Q Consensus       246 ~~L~~ll~~~d-----~~v~~~a~~~l~~l~~~~~  275 (405)
                      ..|+++|+...     ..++.-||.+|.-|+..+.
T Consensus       742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t  776 (1516)
T KOG1832|consen  742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDT  776 (1516)
T ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence            88889887643     5688889999999987654

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=80.49  E-value=15  Score=31.29  Aligned_cols=95  Identities=17%  Similarity=0.223  Sum_probs=65.1

Q ss_pred             HHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-----CCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHh
Q 015537          262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-----HPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNL  335 (405)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~l  335 (405)
                      .++..|..++. .++....++++.+--.+..+|.     ++...++..++..||.++.+++ .....+....++|.++++
T Consensus       119 naL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         119 NALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            34444444444 4444455666655444555552     2234688999999999998665 566677788999999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcC
Q 015537          336 LSGNYKKSIKKEACWTVSNITAG  358 (405)
Q Consensus       336 l~~~~~~~v~~~a~~~L~nl~~~  358 (405)
                      +..+ +.--+.-|.+++.-+...
T Consensus       198 me~g-SElSktvaifI~qkil~d  219 (315)
T COG5209         198 MELG-SELSKTVAIFIFQKILGD  219 (315)
T ss_pred             HHhh-hHHHHHHHHHHHHHHhcc
Confidence            9998 776677777887777543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	405
4b8j_A	528	Rimp_alpha1a Length = 528		1e-176
4b8j_A	528	Rimp_alpha1a Length = 528		2e-15
2yns_A	490	Rimp_alpha_b54nls Length = 490		1e-147
2yns_A	490	Rimp_alpha_b54nls Length = 490		6e-15
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		2e-96
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-89
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		7e-89
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		7e-89
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		8e-89
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		9e-89
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		9e-89
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		9e-89
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-88
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-88
1ial_A	453	Importin Alpha, Mouse Length = 453		5e-84
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		6e-84
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		6e-84
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		7e-84
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		7e-84
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		7e-84
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		7e-84
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		8e-84
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		8e-84
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		8e-84
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		8e-84
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		9e-84
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-83
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-83
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		5e-82
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		4e-35
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		4e-34
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		6e-30
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-24
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		2e-24
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		7e-24
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-21
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-11

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  613 bits (1582), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 294/368 (79%), Positives = 330/368 (89%), Gaps = 1/368 (0%)
Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 63  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 122 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 181
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241
Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301
Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361
Query: 361 EQIQVIMH 368
           +QIQ +++
Sbjct: 362 DQIQAVIN 369

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           L+  +  ++  +A WAL+ ++ GT++  + VI+ G  P  V+LL  PS  V   A+  +G
Sbjct: 252 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311
Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
           NI          ++    L  LL+ L    K S+ + A WT+SN   G      DQ+   
Sbjct: 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQAV 367
Query: 245 LPA-----LAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           + A     L +L+ + + ++  +A WA+S   S G++D+I+ ++  G    L + L+ P 
Sbjct: 368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD 427
Query: 299 PSVLIPALRTVGNIV----------TGD-DMQTQCVIEYQALPCLLNLLSGN----YKKS 343
             ++   L  + NI+           GD ++ +Q + E + L  + NL S +    Y+K+
Sbjct: 428 IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 487
Query: 344 IK-KEACW 350
           +K  EA W
Sbjct: 488 VKILEAYW 495

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  517 bits (1331), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/328 (75%), Positives = 283/328 (86%), Gaps = 1/328 (0%)
Query: 41  REESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKL 100
           +E +  K  R+ + +   L  D +    A    +LP M+ GV+S+D+ +Q E TTQFRKL
Sbjct: 5   KETAAAKFERQHMDSPD-LGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKL 63
Query: 101 LSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160
           LSIERSPPIEEVI+SGVVPRFV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGA
Sbjct: 64  LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
           VPIFVKLL S SDDVREQAVWALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLR
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280
           NATWTLSNFCRGKPQP F+Q  PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQA
Sbjct: 184 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA 243
Query: 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY 340
           VIEAGV PRL E L+HPSPSVLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N 
Sbjct: 244 VIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL 303
Query: 341 KKSIKKEACWTVSNITAGNREQIQVIMH 368
           KKSIKKEACWT+SNITAGN++QIQ +++
Sbjct: 304 KKSIKKEACWTISNITAGNKDQIQAVIN 331

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           L+  +  ++  +A WAL+ ++ GT++  + VI+ G  P  V+LL  PS  V   A+  +G
Sbjct: 214 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 273
Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
           NI          ++    L  LL+ L    K S+ + A WT+SN   G      DQ+   
Sbjct: 274 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQAV 329
Query: 245 LPA-----LAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           + A     L +L+ + + ++  +A WA+S   S G++D+I+ ++  G    L + L+ P 
Sbjct: 330 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD 389
Query: 299 PSVLIPALRTVGNIV----------TGD-DMQTQCVIEYQALPCLLNLLSGN----YKKS 343
             ++   L  + NI+           GD ++ +Q + E + L  + NL S +    Y+K+
Sbjct: 390 IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 449
Query: 344 IK-KEACW 350
           +K  EA W
Sbjct: 450 VKILEAYW 457

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  348 bits (894), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/375 (52%), Positives = 253/375 (67%), Gaps = 14/375 (3%)
Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRR-----EGLQNQQPL 59
           P  +  + +NK + +  ADE RRRR+   VE+RK KR+E+L K+R      +G  + +  
Sbjct: 14  PEYRRTNFKNKGRFS--ADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71
Query: 60  ANDVNAPGT--AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
            + V+A     ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131
Query: 118 VPRFVEFLLREDYPQ-LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           VPR VEF+ RE+ P+ LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+
Sbjct: 132 VPRLVEFM-RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQ 235
           EQA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRG KPQ
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQ 249
Query: 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295
           P +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L 
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309
Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           H S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNI
Sbjct: 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNI 368
Query: 356 TAGNREQIQVIMHVH 370
           TAGN EQIQ ++  +
Sbjct: 369 TAGNTEQIQAVIDAN 383

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/374 (48%), Positives = 241/374 (64%), Gaps = 18/374 (4%)
Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL---QNQQPLAN 61
           P ++ +  +NK K   D+ E RRRR +  VE+RK K++E + K+R           PL  
Sbjct: 10  PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66
Query: 62  DVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+
Sbjct: 67  NRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 123
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAV
Sbjct: 124 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 183
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-P 234
           WALGNIAG     RDLV+  G + PLLA L   P LS      LRN TWTLSN CR K P
Sbjct: 184 WALGNIAGAGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNP 242
Query: 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
            PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L
Sbjct: 243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302
Query: 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
                 ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SN
Sbjct: 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSN 361
Query: 355 ITAGNREQIQVIMH 368
           ITAG ++QIQ +++
Sbjct: 362 ITAGRQDQIQQVVN 375

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  323 bits (829), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 173/300 (57%), Positives = 213/300 (71%), Gaps = 5/300 (1%)
Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
           NIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQ ++  +
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDAN 297

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  323 bits (829), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 173/300 (57%), Positives = 212/300 (70%), Gaps = 5/300 (1%)
Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQ ++  +
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 297

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  323 bits (829), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 173/298 (58%), Positives = 212/298 (71%), Gaps = 5/298 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQ ++  +
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDAN 296

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  323 bits (829), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 176/302 (58%), Positives = 214/302 (70%), Gaps = 3/302 (0%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ ++  + F  +
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 376 VA 377
           ++
Sbjct: 321 IS 322

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  323 bits (829), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 176/302 (58%), Positives = 214/302 (70%), Gaps = 3/302 (0%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ ++  + F  +
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 376 VA 377
           ++
Sbjct: 324 IS 325

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  323 bits (829), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 173/298 (58%), Positives = 211/298 (70%), Gaps = 5/298 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQ ++  +
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 295

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  323 bits (828), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 173/298 (58%), Positives = 212/298 (71%), Gaps = 5/298 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQ ++  +
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDAN 296

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  323 bits (828), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 173/298 (58%), Positives = 211/298 (70%), Gaps = 5/298 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQ ++  +
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 295

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  308 bits (788), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 165/318 (51%), Positives = 213/318 (66%), Gaps = 12/318 (3%)
Query: 58  PLANDVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
           PL  + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G
Sbjct: 20  PLQENRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 76
Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++P+FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + 
Sbjct: 77  LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 136
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCR 231
           EQAVWALGNIAGD    RDLV+  G + PLLA L   P LS      LRN TWTLSN CR
Sbjct: 137 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCR 195
Query: 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290
            K P PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L
Sbjct: 196 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 255
Query: 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350
            + L      ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA W
Sbjct: 256 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATW 314
Query: 351 TVSNITAGNREQIQVIMH 368
           T+SNITAG ++QIQ +++
Sbjct: 315 TMSNITAGRQDQIQQVVN 332

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  307 bits (787), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 168 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 226
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 227 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 342

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  307 bits (787), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 166 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 224
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 225 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 340

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  307 bits (787), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  307 bits (787), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  307 bits (786), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  307 bits (786), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 138 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 196
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 312

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  307 bits (786), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  307 bits (786), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  307 bits (786), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  307 bits (786), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  307 bits (786), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  306 bits (785), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  306 bits (784), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 204/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLSM-----LRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  301 bits (771), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 157/297 (52%), Positives = 202/297 (68%), Gaps = 8/297 (2%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ S++   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL R D   +QFE+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P +S      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 133 IKYGAVDPLLALL-AVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRL 191
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H +D EVL D CWA+SYL+DG N++I  V++ GV P+L + L      ++ PALR +GN
Sbjct: 192 LHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGN 251
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++
Sbjct: 252 IVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 307

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 130/230 (56%), Gaps = 8/230 (3%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP M   + S+D   Q   T +F ++LS + +  I+ VI +G +P  V+ L   +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
            EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA       
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHL 251
             V+  G L P L QL   P   +L+ A W LSN   G   + Q   D  + ALPAL  L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           + S ++++L +A WALS ++ G N++ QAV EAG   +L +   H +  +
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 129/234 (55%), Gaps = 8/234 (3%)
Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+  + L  +D  Q Q  A    + I S  +E  + VID GA+P  V+LL SP++ + +
Sbjct: 14  LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KP 234
           +A+WAL NIA         V+  G L P L QL   P   +L+ A W LSN   G   + 
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
           Q   D  + ALPAL  L+ S ++++L +A WALS ++ G N++IQAVI+AG  P L + L
Sbjct: 132 QAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Query: 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348
             P+  +L  AL  + NI +G + Q Q V E  AL  L  L S   +K I+KEA
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 242

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 112/206 (54%), Gaps = 9/206 (4%)
Query: 172 SDDVREQ--AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           SDD++EQ  A      I  D       V+  G L P L QL   P   +L+ A W LSN 
Sbjct: 23  SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 230 CRG---KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
             G   + Q   D  + ALPAL  L+ S ++++L +A WALS ++ G N++IQAVI+AG 
Sbjct: 82  ASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
            P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 198
Query: 347 EACWTVSNITAGNREQIQVIMHVHAF 372
           EA W +SNI +G  EQ Q +    A 
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGAL 224

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 6/175 (3%)
Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHLIHSNDD 257
           G  +P + Q    P    L++A   LS    G   + Q   D  + ALPAL  L+ S ++
Sbjct: 11  GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNE 68
Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           ++L +A WALS ++ G N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G +
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
            Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQ Q +    A 
Sbjct: 129 EQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 6/174 (3%)
Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHLIHSNDD 257
           G  +P + Q    P    L++A   LS    G   + Q   D  + ALPAL  L+ S ++
Sbjct: 11  GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNE 68
Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           ++L +A WALS ++ G N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G +
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
            Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQ Q +    A
Sbjct: 129 EQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           Q +LS  R  +  LS+    + Q   D  + ALPAL  L+ S ++++L +A WALS ++ 
Sbjct: 27  QEQLSATRKFSQILSDGNE-QIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIAS 83
Query: 273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332
           G N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L
Sbjct: 84  GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143
Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
           + LLS +  + I +EA W +SNI +G  EQ Q +    A 
Sbjct: 144 VQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 6/244 (2%)
Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V + V+ L   D  + Q EAA  L  IASG +   K ++D G V + VKLL S   +V++
Sbjct: 4   VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
           +A  AL NIA         ++  GG V +L +L       + + A   L+N   G P   
Sbjct: 63  EAARALANIASGPDEAIKAIVDAGG-VEVLVKLLTSTDSEVQKEAARALANIASG-PDEA 120
Query: 238 FDQVSPA--LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295
              +  A  +  L  L+ S D EV  +A  AL+ ++ G ++ I+A+++AG    L + L 
Sbjct: 121 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
                V   A R + NI +G     + +++   +  L  LL+ +    ++KEA   + NI
Sbjct: 181 STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT-STDSEVQKEAQRALENI 239
Query: 356 TAGN 359
            +G 
Sbjct: 240 KSGG 243

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHSNDDEVL 260
           LV LL   + + +    + A   L+    G P      +  A  +  L  L+ S D EV 
Sbjct: 7   LVKLLTSTDSETQ----KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
            +A  AL+ ++ G ++ I+A+++AG    L + L      V   A R + NI +G D   
Sbjct: 62  KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV 376
           + +++   +  L+ LL+ +    ++KEA   ++NI +G  E I+ I+      ++V
Sbjct: 122 KAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-152
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-36
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-143
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-42
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-25
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-137
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-55
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-40
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-35
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-91
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-47
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-85
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-55
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-54
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-43
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-38
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-32
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-84
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-61
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-48
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-48
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-69
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-57
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-47
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-37
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-30
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-62
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-57
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-18
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-56
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-49
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-38
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-56
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-53
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-39
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-52
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-19
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-49
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-21
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-44
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-17
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-17
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-39
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-13
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-07
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-38
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-30
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-29
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-28
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-27
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-20
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-21
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-08
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	4e-13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-10
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	7e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	7e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	9e-07
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	3e-08
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	1e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	9e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-04
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	6e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	9e-07
1qgr_A	876	Protein (importin beta subunit); transport recepto	2e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	5e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	3e-06
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  440 bits (1133), Expect = e-152
 Identities = 191/383 (49%), Positives = 242/383 (63%), Gaps = 12/383 (3%)

Query: 7   SKADSRRNKYK--VAVDADEGRRRREDNMVEIRKNKREESLQKKRR-------EGLQNQQ 57
              + RR  +K      ADE RRRR+   VE+RK KR+E+L K+R             + 
Sbjct: 12  FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71

Query: 58  PLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
             +   +    ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           VPR VEF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236
           QA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRGK PQP
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQP 250

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
            S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNIT
Sbjct: 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNIT 369

Query: 357 AGNREQIQVIMHVHAFSIIVAFF 379
           AGN EQIQ ++  +    +V   
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLL 392

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  137 bits (347), Expect = 3e-36
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 20/243 (8%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP +   ++S D+    +       L        I+ VI   +  R VE LL  +   +Q
Sbjct: 259 LPTLAKLIYSMDTETLVDACWAISYLSDGP-QEAIQAVIDVRIPKRLVE-LLSHESTLVQ 316

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
             A  A+ NI +G    T+VVI+ G +P    LL SP ++++++A W + NI   +    
Sbjct: 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 376

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-----SPALPALA 249
             V+    L+P L +L    +    + A W +SN   G  Q P D +        +  L 
Sbjct: 377 QAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP-DIIRYLVSQGCIKPLC 434

Query: 250 HLIHSNDDEVLTDACWALSYL-----------SDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
            L+   D+ ++     AL  +               N+    + +AG   ++     + +
Sbjct: 435 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494

Query: 299 PSV 301
             +
Sbjct: 495 DKI 497

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  417 bits (1073), Expect = e-143
 Identities = 165/360 (45%), Positives = 216/360 (60%), Gaps = 7/360 (1%)

Query: 23  DEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGV 82
             G   R   M E    K E         G  +      D+ +        ++  +V G+
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSN-QGTVNWSVEDIVKGI 66

Query: 83  WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALT 142
            SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+AWALT
Sbjct: 67  NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 126

Query: 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202
           NIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV+  G 
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186

Query: 203 LVPLLAQLNG----QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDD 257
           + PLLA L            LRN TWTLSN CR K P PP D V   LP L  L+H ND 
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GNIVTG D
Sbjct: 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVA 377
            QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++      +V 
Sbjct: 307 EQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  153 bits (387), Expect = 8e-42
 Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 11/258 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP +V  +  ND  V  +       L +   +  IE V++ GVVP+ V+ LL      + 
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVK-LLGATELPIV 291

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
             A  A+ NI +GT E T+ VID GA+ +F  LL +P  +++++A W + NI        
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI 351

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHLI 252
             V++ G LVP L  +  +      + A W ++N+  G        +     +  L +L+
Sbjct: 352 QQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410

Query: 253 HSNDDEVLTDACWALSYL------SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL 306
            + D +++     A+S +         T      + E G   ++     H + SV   +L
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470

Query: 307 RTVGNIVTGDDMQTQCVI 324
             +    + ++ + Q V+
Sbjct: 471 NLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  106 bits (265), Expect = 4e-25
 Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 11/220 (5%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +V  + + +  +          +++       ++VI +G +  F   LL      +Q
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPS-LLTNPKTNIQ 333

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRC 193
            EA W ++NI +G  +  + V++HG VP  V +L       +++A WA+ N   G +   
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-------ALP 246
              ++  G + PL+  L+      +++     +SN  +   +    +           L 
Sbjct: 394 IVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452

Query: 247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
            +  L    ++ V   +   +        ++ Q V+    
Sbjct: 453 KIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  399 bits (1026), Expect = e-137
 Identities = 181/323 (56%), Positives = 221/323 (68%), Gaps = 3/323 (0%)

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GV 117
               +N    A        M+  ++S     Q   T +FRKLLS E +PPI+EVI + GV
Sbjct: 6   HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGV 65

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V RFVEFL R++   LQFE+AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+E
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236
           QAVWALGNIAGDS  CRD VL    L PLL   + Q +L+M RNA W LSN CRGK P P
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            F +VSP L  L+ L+  +D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
               V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS + K+SIKKEACWT+SNIT
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS-SPKESIKKEACWTISNIT 304

Query: 357 AGNREQIQVIMHVHAFSIIVAFF 379
           AGNR QIQ ++  + F  +++  
Sbjct: 305 AGNRAQIQTVIDANIFPALISIL 327

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  188 bits (479), Expect = 2e-55
 Identities = 74/299 (24%), Positives = 130/299 (43%), Gaps = 7/299 (2%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
             +  +Q+E       + +   S     VI++G VP F+E LL  ++  +Q +A WAL N
Sbjct: 76  KENCTLQFESAWVLTNI-ASGNSLQTRIVIQAGAVPIFIE-LLSSEFEDVQEQAVWALGN 133

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGG 202
           IA  ++     V+D   +P  ++L    +   +   AVWAL N+        +       
Sbjct: 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193

Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLT 261
           L  +L+ L       +L +A W LS    G        + +     L  L+  ND +V++
Sbjct: 194 L-NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS 252

Query: 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321
            A  A+  +  G + + Q ++       L   L  P  S+   A  T+ NI  G+  Q Q
Sbjct: 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312

Query: 322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIVAFF 379
            VI+    P L+++L    +   +KEA W ++N T+ G+ EQI+ ++ +     +    
Sbjct: 313 TVIDANIFPALISILQ-TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL 370

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  148 bits (374), Expect = 2e-40
 Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 18/241 (7%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L V+   ++ +D+ V  +       L S   +  I+ VI +GV  R VE LL  +  ++ 
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYL-SDGPNDKIQAVIDAGVCRRLVE-LLMHNDYKVV 251

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
             A  A+ NI +G    T+V+++  A+   + LL SP + ++++A W + NI   +    
Sbjct: 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI 311

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHL 251
             V+       L++ L   + +    + A W ++N   G        +     +  L  L
Sbjct: 312 QTVIDANIFPALISILQTAEFRTR--KEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369

Query: 252 IHSNDDEVLTDACWALSYL-----------SDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           +   D +++  A   L  +             G N     + EA    ++     H +  
Sbjct: 370 LTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQE 429

Query: 301 V 301
           +
Sbjct: 430 I 430

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  135 bits (341), Expect = 1e-35
 Identities = 37/242 (15%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 143 NIASGTSEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIA--GDSPRCRDLVL 198
            +    ++   + +          +++++S S + +  A      +     +P   +++ 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDD 257
           + G +   +  L  +   ++   + W L+N   G          + A+P    L+ S  +
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGD 316
           +V   A WAL  ++  +      V++  + P L +     +  ++   A+  + N+  G 
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV 376
               +       L  L  LL       +  +ACW +S ++ G  ++IQ ++       +V
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLF-VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240

Query: 377 AF 378
             
Sbjct: 241 EL 242

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  274 bits (702), Expect = 5e-91
 Identities = 84/241 (34%), Positives = 133/241 (55%), Gaps = 4/241 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP M   + S+D   Q   T +F ++LS + +  I+ VI +G +P  V+ L   +  Q+ 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQIL 71

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
            EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA       
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V+  G L  L+  L+  P   +L+ A W LSN   G  +     + + ALPAL  L+ 
Sbjct: 132 QAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 190

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           S ++++L +A WALS ++ G N++ QAV EAG   +L +   H +  +   A   +  + 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

Query: 314 T 314
           +
Sbjct: 251 S 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  161 bits (410), Expect = 2e-47
 Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 1/134 (0%)

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
            LP +   ++S+D +    A    S +    N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131

Query: 364 QVIMHVHAFSIIVA 377
           Q ++   A   +V 
Sbjct: 132 QAVIDAGALPALVQ 145

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  135 bits (342), Expect = 2e-37
 Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 4/183 (2%)

Query: 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHLIHSN 255
              G  +P + Q      +    +AT   S             V  + ALPAL  L+ S 
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLLSSP 66

Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           ++++L +A WALS ++ G N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G
Sbjct: 67  NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375
            + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ ++   A   +
Sbjct: 127 GNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185

Query: 376 VAF 378
           V  
Sbjct: 186 VQL 188

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  272 bits (698), Expect = 1e-85
 Identities = 49/306 (16%), Positives = 104/306 (33%), Gaps = 9/306 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT      LS  R      + +SG +P  V+ +L      + 
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVK-MLGSPVDSVL 115

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNRE---QIQVIMHVH 370
            +      V +   +  L+  +     ++ I + A   + ++T+ ++E       +   +
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352

Query: 371 AFSIIV 376
              ++V
Sbjct: 353 GLPVVV 358

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  192 bits (490), Expect = 2e-55
 Identities = 69/306 (22%), Positives = 116/306 (37%), Gaps = 12/306 (3%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +   +   D  V  +      +L   E S     +    +V   V  +   +  +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
              A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHLI 252
             V   GGL  ++A LN +  +  L   T  L     G  +     +  S    AL +++
Sbjct: 134 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESK-LIILASGGPQALVNIM 191

Query: 253 HSNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
            +   E L       L  LS  +++K  A++EAG    L   L  PS  ++   L T+ N
Sbjct: 192 RTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250

Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           +    D  T+       L  L+ LL  +   ++   A   +SN+T  N +   ++  V  
Sbjct: 251 L---SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGG 306

Query: 372 FSIIVA 377
              +V 
Sbjct: 307 IEALVR 312

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  188 bits (479), Expect = 6e-54
 Identities = 39/258 (15%), Positives = 92/258 (35%), Gaps = 6/258 (2%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 169 YSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
            + +D +        L N++         +   GG+  L+  L   P  S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLH 123

Query: 228 NFCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
           N    +         +  L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   +   +   L+     V  +++        ++E   +  L   L+    + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 242

Query: 347 EACWTVSNITAGNREQIQ 364
              WT+ N++    +Q  
Sbjct: 243 NCLWTLRNLSDAATKQEG 260

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  159 bits (404), Expect = 2e-43
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 1/229 (0%)

Query: 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209
                 +   A+P   KLL      V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269
           +     +   R    TL N    +        S  +PAL  ++ S  D VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329
           L         AV  AG   ++   L   +   L      +  +  G+      ++     
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAF 378
             L+N++     + +       +  + +        I+       +   
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLH 232

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  143 bits (363), Expect = 6e-38
 Identities = 52/300 (17%), Positives = 106/300 (35%), Gaps = 13/300 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L  MVA +   +       T   + L +         ++ SG     V  +    Y +L 
Sbjct: 142 LQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTYTYEKLL 200

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           +  +  L  ++   S +   +++ G +      L  PS  + +  +W L N++  + +  
Sbjct: 201 WTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-- 257

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLI- 252
                  GL+  L QL G   ++++  A   LSN      +          + AL   + 
Sbjct: 258 --QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315

Query: 253 -HSNDDEVLTDACWALSYLSDGTNDK---IQAVIEAGVFPRLAEFLMHPSPSVLIPALRT 308
              + +++   A  AL +L+    +      AV      P + + L  PS   LI A   
Sbjct: 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375

Query: 309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH 368
           +   +         + E  A+P L+ LL     +  ++      +        +++ I+ 
Sbjct: 376 LIRNLALCPANHAPLREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 434

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  128 bits (322), Expect = 2e-32
 Identities = 51/295 (17%), Positives = 93/295 (31%), Gaps = 30/295 (10%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-EDYPQL 133
           L  +V  + S+D  V          L +         V + G +   V  +LR  D   +
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 323

Query: 134 QFEAAWALTNIASGTSEHTKV---VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              A  AL ++ S   E       V  H  +P+ VKLL+ PS     +A   L       
Sbjct: 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
           P     +  QG  +P L QL  +      R  +   +                       
Sbjct: 384 PANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQF 423

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           +     +E++     AL  L+   +++   +      P   + L  P  ++   A   + 
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 482

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQ 364
            +    +   + +    A   L  LL S N    +   A   +  ++    +  +
Sbjct: 483 ELAQDKEAA-EAIEAEGATAPLTELLHSRNEG--VATYAAAVLFRMSEDKPQDYK 534

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  106 bits (267), Expect = 3e-25
 Identities = 36/262 (13%), Positives = 72/262 (27%), Gaps = 25/262 (9%)

Query: 84  SNDSGVQYECTTQFRKLLSI--ERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWAL 141
            +   +        R L S   E       V     +P  V+ L    +  L  +A   L
Sbjct: 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI-KATVGL 376

Query: 142 TNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG 201
               +    +   + + GA+P  V+LL     D + +                       
Sbjct: 377 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ---------------- 420

Query: 202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLT 261
                   + G     ++   T  L    R        +    +P    L++S  + +  
Sbjct: 421 -----QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 475

Query: 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ 321
            A   L  L+    +  +A+   G    L E L   +  V   A   +  +        +
Sbjct: 476 VAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK 534

Query: 322 CVIEYQALPCLLNLLSGNYKKS 343
             +  +    L       + ++
Sbjct: 535 KRLSVELTSSLFRTEPMAWNET 556

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 66.5 bits (162), Expect = 5e-12
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
           N +  A +     P L + L      V+  A   V  +   +  +   +   Q +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAF 378
            +         +    T+ N+ + +RE +  I        +V  
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKM 106

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  265 bits (680), Expect = 3e-84
 Identities = 49/307 (15%), Positives = 104/307 (33%), Gaps = 9/307 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT      LS  R      + +SG +P  V+ +L      + 
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVK-MLGSPVDSVL 118

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNRE---QIQVIMHVH 370
            +      V +   +  L+  +     ++ I + A   + ++T+ ++E       +   +
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355

Query: 371 AFSIIVA 377
              ++V 
Sbjct: 356 GLPVVVK 362

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  206 bits (527), Expect = 1e-61
 Identities = 65/304 (21%), Positives = 112/304 (36%), Gaps = 8/304 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +   +   D  V  +      +L   E S     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
              A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V   GGL  ++A LN +  +  L   T  L     G  +     + S    AL +++ 
Sbjct: 137 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS 373
              D  T+       L  L+ LL  +   ++   A   +SN+T  N +   ++  V    
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 374 IIVA 377
            +V 
Sbjct: 312 ALVR 315

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  170 bits (432), Expect = 5e-48
 Identities = 38/259 (14%), Positives = 93/259 (35%), Gaps = 6/259 (2%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
            +  + +  +P   + LL ++   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTK-LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 169 YSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
            + +D +        L N++         +   GG+  L+  L   P  S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLH 126

Query: 228 NFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   +   +   L+     V  +++        ++E   +  L   L+    + + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 245

Query: 347 EACWTVSNITAGNREQIQV 365
              WT+ N++    +Q  +
Sbjct: 246 NCLWTLRNLSDAATKQEGM 264

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  170 bits (432), Expect = 5e-48
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 4/239 (1%)

Query: 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199
           A+ N+ +         +   A+P   KLL      V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV 259
              +  ++  +     +   R    TL N    +        S  +PAL  ++ S  D V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319
           L  A   L  L         AV  AG   ++   L   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAF 378
              ++       L+N++     + +       +  + +        I+       +   
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLH 235

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  155 bits (394), Expect = 1e-42
 Identities = 54/331 (16%), Positives = 107/331 (32%), Gaps = 35/331 (10%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 244

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALA 249
            +V   GG+  L+  +     +  +   A   L +      +    Q        LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 310 GNIVTGDDMQTQCVIEY---------------------QALPCLLNLL-SGNYKKSIKKE 347
                 + ++ + ++E                        +P  + LL S      I++ 
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN--IQRV 479

Query: 348 ACWTVSNITAGNREQIQVIMHVHAFSIIVAF 378
           A   +  + A ++E  + I    A + +   
Sbjct: 480 AAGVLCEL-AQDKEAAEAIEAEGATAPLTEL 509

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  122 bits (308), Expect = 8e-31
 Identities = 49/287 (17%), Positives = 86/287 (29%), Gaps = 30/287 (10%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQL 133
           L  +V  + S+D  V          L +         V + G +   V  +LR  D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 134 QFEAAWALTNIASGTSEHTKV---VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              A  AL ++ S   E       V  H  +P+ VKLL+ PS     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
           P     +  QG +  L+  L  +      R  +   +     +     + V     AL  
Sbjct: 387 PANHAPLREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           L     + +                     +      P   + L  P  ++   A   + 
Sbjct: 446 LARDVHNRI--------------------VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNIT 356
            +    +   + +    A   L  LL S N    +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELLHSRNEG--VATYAAAVLFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  232 bits (592), Expect = 2e-69
 Identities = 48/306 (15%), Positives = 105/306 (34%), Gaps = 9/306 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT+     LS  R   +  + +SG +P  V  +L      + 
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA-IFKSGGIPALVN-MLGSPVDSVL 251

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 311

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 371

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 428

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNRE---QIQVIMHVH 370
            +      V +   +  L+  +     ++ I + A   + ++T+ +++       +   +
Sbjct: 429 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488

Query: 371 AFSIIV 376
              ++V
Sbjct: 489 GLPVVV 494

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  199 bits (508), Expect = 2e-57
 Identities = 49/308 (15%), Positives = 92/308 (29%), Gaps = 8/308 (2%)

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +DV+     +  +            D   QY  T   R      R+    E +  G+   
Sbjct: 55  DDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIP 109

Query: 121 FVEFLLREDYP-QLQFEAAWALTNIASGTSEH-TKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             +F        Q   E +  L +       +     +   A+P   KLL      V  +
Sbjct: 110 STQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNK 169

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           A   +  ++        ++ S   +  ++  +     +   R  + TL N    +     
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
              S  +PAL +++ S  D VL  A   L  L         AV  AG   ++   L   +
Sbjct: 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 289

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
              L      +  +  G+      ++       L+N++   Y           V  + + 
Sbjct: 290 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR-TYTYEKLLWTTSRVLKVLSV 348

Query: 359 NREQIQVI 366
                  I
Sbjct: 349 CSSNKPAI 356

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  172 bits (437), Expect = 1e-47
 Identities = 52/330 (15%), Positives = 105/330 (31%), Gaps = 33/330 (10%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 377

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALA 249
            +V   GG+  L+  +     +  +   A   L +           Q        LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 310 GNIVTGDDMQT---------------------QCVIEYQALPCLLNLLSGNYKKSIKKEA 348
                 + ++                        +     +P  + LL  +  ++I++ A
Sbjct: 555 TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY-SPIENIQRVA 613

Query: 349 CWTVSNITAGNREQIQVIMHVHAFSIIVAF 378
              +  + A ++E  + I    A + +   
Sbjct: 614 AGVLCEL-AQDKEAAEAIEAEGATAPLTEL 642

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  142 bits (360), Expect = 3e-37
 Identities = 41/317 (12%), Positives = 94/317 (29%), Gaps = 35/317 (11%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +   +      +   C    R L         ++    G++   V+ LL  D   + 
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQ-LLGSDDINVV 416

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNI---AGD 189
             AA  L+N+     ++  +V   G +   V+ +      +D+ E A+ AL ++     D
Sbjct: 417 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD 476

Query: 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALA 249
           +   ++ V    GL  ++  L+      +++     + N           +   A+P L 
Sbjct: 477 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 536

Query: 250 HLIHSNDDEVLTDACWALSYLSDG---------------------TNDKIQAVIEAGVFP 288
            L+     +         +                                 +      P
Sbjct: 537 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596

Query: 289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKE 347
              + L  P  ++   A   +  +    +   + +    A   L  LL S N    +   
Sbjct: 597 LFVQLLYSPIENIQRVAAGVLCELAQDKE-AAEAIEAEGATAPLTELLHSRNEG--VATY 653

Query: 348 ACWTVSNITAGNREQIQ 364
           A   +  ++    +  +
Sbjct: 654 AAAVLFRMSEDKPQDYK 670

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  123 bits (309), Expect = 1e-30
 Identities = 50/294 (17%), Positives = 89/294 (30%), Gaps = 27/294 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQL 133
           L  +V  + S+D  V          L +         V + G +   V  +LR  D   +
Sbjct: 401 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 459

Query: 134 QFEAAWALTNIASGTSEHTKV---VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              A  AL ++ S   +       V  H  +P+ VKLL+ PS     +A   L       
Sbjct: 460 TEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519

Query: 191 PRCRDLVLSQGGLVPLLAQL---------------------NGQPKLSMLRNATWTLSNF 229
           P     +  QG +  L+  L                      G     ++   T  L   
Sbjct: 520 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHIL 579

Query: 230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289
            R        +    +P    L++S  + +   A   L  L+    +  +A+   G    
Sbjct: 580 ARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAP 638

Query: 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343
           L E L   +  V   A   +  +        +  +  +    L       + ++
Sbjct: 639 LTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNET 692

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  202 bits (515), Expect = 7e-62
 Identities = 50/305 (16%), Positives = 95/305 (31%), Gaps = 34/305 (11%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154
            +          P +++              +          A   L  + S   EH   
Sbjct: 20  CETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDEEHRHA 68

Query: 155 VIDHGAVPIFVKLLYSPSD-----------DVREQAVWALGNIAGDSPRCRDLVLSQGGL 203
           + + G +    +LL    +            +R  A  AL N+       +  + S  G 
Sbjct: 69  MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128

Query: 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHL-IHSNDDEVL 260
           +  L          + +     L N            +    ++ AL    +    +  L
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 261 TDACWALSYLS-DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP-------ALRTVGNI 312
                AL  LS   T +K       G    L   L + S +  +         LR V ++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
           +  ++   Q + E   L  LL  L  ++  +I   AC T+ N++A N +  + +  + A 
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307

Query: 373 SIIVA 377
           S++  
Sbjct: 308 SMLKN 312

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  189 bits (481), Expect = 8e-57
 Identities = 52/311 (16%), Positives = 98/311 (31%), Gaps = 24/311 (7%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL--------- 125
           +      + +              KL   E       +   G +    E L         
Sbjct: 34  MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGL 91

Query: 126 -LREDYPQLQFEAAWALTNIASGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWAL 183
                   L+  A  ALTN+  G   +   +    G +   V  L S S+D+++     L
Sbjct: 92  TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151

Query: 184 GNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQ 240
            N++       +  +   G +  L+       K S L++    L N        +     
Sbjct: 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 211

Query: 241 VSPALPALAHLI----HSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEF 293
           V  AL  L   +     +N   ++      L  +S       D  Q + E      L + 
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           L   S +++  A  T+ N+   +    + + +  A+  L NL+     K I   +   + 
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALR 330

Query: 354 NITAGNREQIQ 364
           N+ A    + +
Sbjct: 331 NLMANRPAKYK 341

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 84.5 bits (209), Expect = 3e-18
 Identities = 31/209 (14%), Positives = 57/209 (27%), Gaps = 14/209 (6%)

Query: 176 REQAVW-ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
               +   L  I      C +   +    +         P    +  A   L      + 
Sbjct: 5   HHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 235 QPPFDQVSPALPALAHLIHS-----------NDDEVLTDACWALSYLSDGTNDKIQAVI- 282
                     L A+A L+                 +   A  AL+ L+ G       +  
Sbjct: 65  HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGNYK 341
             G    L   L   S  +       + N+    D+ ++  + E  ++  L+       K
Sbjct: 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 184

Query: 342 KSIKKEACWTVSNITAGNREQIQVIMHVH 370
           +S  K     + N++A   E    I  V 
Sbjct: 185 ESTLKSVLSALWNLSAHCTENKADICAVD 213

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  190 bits (485), Expect = 2e-56
 Identities = 60/369 (16%), Positives = 112/369 (30%), Gaps = 43/369 (11%)

Query: 18  VAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPV 77
           +    D+ R RRE  ++ + +  R         +                          
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM-----------------DQ 152

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL----------LR 127
               + +              KL   E       +   G +    E L            
Sbjct: 153 DKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTND 210

Query: 128 EDYPQLQFEAAWALTNIASGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
                L+  A  ALTN+  G   +   +    G +   V  L S S+D+++     L N+
Sbjct: 211 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270

Query: 187 AGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGKPQPPFDQVS 242
           +       +  +   G +  L+       K S L++     W LS  C    +     V 
Sbjct: 271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVD 329

Query: 243 PALPALAHLI----HSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLM 295
            AL  L   +     +N   ++      L  +S       D  Q + E      L + L 
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389

Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
             S +++  A  T+ N+   +    + + +  A+  L NL+     K I   +   + N+
Sbjct: 390 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNL 448

Query: 356 TAGNREQIQ 364
            A    + +
Sbjct: 449 MANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  172 bits (436), Expect = 3e-49
 Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 26/275 (9%)

Query: 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDD 174
           +          A   L  + S   EH   + + G +    +LL              S  
Sbjct: 157 MPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 175 VREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           +R  A  AL N+  GD      L   +G +  L+AQL       + +     L N     
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRA 274

Query: 234 PQPPFDQV--SPALPALAHL-IHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVFPR 289
                  +    ++ AL    +    +  L     AL  LS   T +K       G    
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 290 LAEFLMHPSPSVLIP-------ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342
           L   L + S +  +         LR V +++  ++   Q + E   L  LL  L  ++  
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSL 393

Query: 343 SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVA 377
           +I   AC T+ N++A N +  + +  + A S++  
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 428

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  141 bits (357), Expect = 6e-38
 Identities = 57/379 (15%), Positives = 126/379 (33%), Gaps = 64/379 (16%)

Query: 57  QPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-S 115
              ++         K+E +  +++ + ++D   + + +   R LL++  S      +R S
Sbjct: 16  PRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQS 69

Query: 116 GVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164
           G +P  ++ L   D             + +  A+ AL NI     +  +   +   + + 
Sbjct: 70  GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLL 129

Query: 165 VKL------------------------LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
            ++                        + +P +     AV  L  ++ D    R  +   
Sbjct: 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNEL 188

Query: 201 GGLVPLLAQL----------NGQPKLSMLRNATWTLSNFCRGKP--QPPFDQVSPALPAL 248
           GGL  +   L          N    +++ R A   L+N   G    +     +   + AL
Sbjct: 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 248

Query: 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPS-PSVLIPAL 306
              + S  +++       L  LS   +   +  + E G    L E  +     S L   L
Sbjct: 249 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308

Query: 307 RTVGNI-VTGDDMQTQCVIEYQALPCLLNLLSGNYKKS---IKKEACWTVSNIT---AGN 359
             + N+     + +        AL  L+  L+   + +   I +     + N++   A N
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368

Query: 360 REQIQVIMHVHAFSIIVAF 378
            +  Q++   +    ++  
Sbjct: 369 EDHRQILRENNCLQTLLQH 387

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  183 bits (466), Expect = 2e-56
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
                   +P+ V+ L   D  Q    A   L+ IASG +E  + VID GA+P  V+LL 
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           SP++ + ++A+WAL NIA         V+  G L  L+  L+  P   +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNI 123

Query: 230 CRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288
             G  +     +   ALPAL  L+ S ++++L +A WALS ++ G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 289 RLAEFLMHPSPSVLIPALRTVGNIVT 314
           +L +   H +  +   A   +  + +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  175 bits (445), Expect = 3e-53
 Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 1/138 (0%)

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
                LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+ 
Sbjct: 9   HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE 68

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
            +L  AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G 
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGG 127

Query: 360 REQIQVIMHVHAFSIIVA 377
            EQIQ ++   A   +V 
Sbjct: 128 NEQIQAVIDAGALPALVQ 145

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  138 bits (349), Expect = 6e-39
 Identities = 67/225 (29%), Positives = 97/225 (43%), Gaps = 45/225 (20%)

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
                 +P  V+ L SP     + A+  L  IA         V+  G             
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG------------- 54

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274
                                        ALPAL  L+ S ++++L +A WALS ++ G 
Sbjct: 55  -----------------------------ALPALVQLLSSPNEQILQEALWALSNIASGG 85

Query: 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
           N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L+ 
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145

Query: 335 LL-SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAF 378
           LL S N +  I +EA W +SNI +G  EQ Q +    A   +   
Sbjct: 146 LLSSPNEQ--ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  179 bits (454), Expect = 7e-52
 Identities = 43/265 (16%), Positives = 84/265 (31%), Gaps = 18/265 (6%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+ V+  L     + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQ-YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  AL N+   S   +     Q G+   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 238 FDQVSPALPALAHLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQAV 281
            + ++ ALP LA  +                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341
             +G+   L  ++ +   +           +    ++  +   E       L   + N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 342 KSIKKEACWTVSNITAGNREQIQVI 366
                  C++  +    N      +
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPL 266

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 88.7 bits (219), Expect = 2e-19
 Identities = 44/288 (15%), Positives = 78/288 (27%), Gaps = 27/288 (9%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL------ 168
           SG              P++ F A   L N++S  +    +    G +   +  +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQPKLSMLR 220
               D   E  +  L N++            Q       A            +    M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 221 NATWTLSNFCRG-KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-- 277
           N    L       K              L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 278 ---IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
                  ++    P++A  L   +  V+      + N+          V+  Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 335 LLSGNYKKSIKKE-----ACWTVSNITAGNREQIQVIMHVHAFSIIVA 377
           LL+ +   +   E     AC+TV N+ A   +  +        + I+ 
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIIN 426

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 85.7 bits (211), Expect = 2e-18
 Identities = 48/333 (14%), Positives = 94/333 (28%), Gaps = 52/333 (15%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + S +  VQ       R  L    +    E  R   +   V  L R    ++Q
Sbjct: 46  ICKLVDLLRSPNQNVQQAAAGALR-NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP----------------SDDVREQ 178
            +    L N++S   +  K  +   A+P+    +  P                  +V   
Sbjct: 105 KQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNFCRG 232
           A   L N++      R  + +  GL+  L           +     + N    L N    
Sbjct: 163 ATGCLRNLSSADA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221

Query: 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
                  +V      L +   +   E  +  C++        N+    + E    P+ + 
Sbjct: 222 LDA----EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277

Query: 293 FLMHPSPSVLIPAL-------------------RTVGNIVTGDDMQTQCVIEYQALPCLL 333
           +L H         L                    T    +    M     ++ + LP + 
Sbjct: 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIA 337

Query: 334 NLLSGNYKKSIKKEACWTVSNIT--AGNREQIQ 364
            LL       + +     +SN++        + 
Sbjct: 338 RLLQSGNSD-VVRSGASLLSNMSRHPLLHRVMG 369

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 78.7 bits (193), Expect = 4e-16
 Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 35/326 (10%)

Query: 57  QPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
             LA+ V  P +     N  +        D  V +  T   R L S   +        SG
Sbjct: 130 PVLADRVIIPFSGWCDGNSNMSRE---VVDPEVFFNATGCLRNL-SSADAGRQTMRNYSG 185

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++   +   ++      + +       +    +   ++  +       +    + +    
Sbjct: 186 LIDSLMA-YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL-EYNARNAYTE 243

Query: 177 EQAVWALGNIAGD---------------SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221
           + +     N +                 +P+    +     +   L  +    K + L  
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 222 ATWTLSNFCRGKPQPPFD------QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
               L N    K                 LP +A L+ S + +V+      LS +S   +
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RH 361

Query: 276 DKIQAVIEAGVFPRLAEFL------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329
             +  V+   VFP +   L         S  +L  A  TV N++       +       L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNI 355
             ++NL   +      + A   +S++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 70.6 bits (172), Expect = 2e-13
 Identities = 19/124 (15%), Positives = 46/124 (37%)

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
             +P     + S D++      + + +         Q V + G   +L + L  P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
             A   + N+V               +   ++LL       I+K+    + N+++ +  +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 363 IQVI 366
            ++I
Sbjct: 122 EELI 125

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 66.8 bits (162), Expect = 3e-12
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS 170
             ++   +P+    LL+     +    A  L+N++         V+ +   P   +LL S
Sbjct: 326 IGLKEKGLPQIAR-LLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTS 382

Query: 171 ------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224
                  S+D+   A + + N+    P+      S   L  ++              A  
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442

Query: 225 TLSNFCRGKP 234
            LS+    K 
Sbjct: 443 LLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 60.2 bits (145), Expect = 4e-10
 Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 19/194 (9%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHSNDDEV 259
           G  +P   Q              + + + C               +  L  L+ S +  V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDM 318
              A  AL  L   +                   L    +  +       + N+ + D++
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 319 QTQCVIEYQALPCLLNLLSGNYK---------------KSIKKEACWTVSNITAGNREQI 363
           +    +   ALP L + +   +                  +   A   + N+++ +  + 
Sbjct: 121 KE--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 364 QVIMHVHAFSIIVA 377
            +  +      ++A
Sbjct: 179 TMRNYSGLIDSLMA 192

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  167 bits (423), Expect = 5e-49
 Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 3/236 (1%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
           S  +P       +    Q +  A   L ++              G   +  + L + +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
           +R +A   +G  + +    ++ VL  G L  LL  L+     ++   A + +S   R + 
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 235 QPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                         L   +     ++   + + L  L  G  +    +   G+  +L   
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349
           +           L  + ++VT      +     +    L  LL    +   + E  
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 92.0 bits (228), Expect = 3e-21
 Identities = 31/237 (13%), Positives = 79/237 (33%), Gaps = 5/237 (2%)

Query: 30  EDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGV-WSNDSG 88
              M        + + Q++R   L+    L  +++      +L  + ++V     +  +G
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 89  VQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +++                 I E+V+  G + + +  L R+    ++ +A +A++ +   
Sbjct: 98  LRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
                   +      + ++ +      ++ ++ + L N+    P  +  + S  G+V  L
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM-GMVQQL 214

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC 264
             L          +    L +     PQ   +   P L     L H        +  
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 78.9 bits (194), Expect = 1e-16
 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 15/176 (8%)

Query: 202 GLVPLLAQLNGQPK-LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVL 260
           GLVP  + + GQ   +  +++    LS               P  P       + D +  
Sbjct: 12  GLVPRGSHMRGQRGEVEQMKSCLRVLSQ--------------PMPPTAGEAEQAADQQER 57

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
             A   L+ L +  ++       +G+   +  +L   +  +   A + +G          
Sbjct: 58  EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 117

Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIV 376
           + V+   AL  LL LL  +   +++ +A + +S +       +   + +  FS+++
Sbjct: 118 EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM 173

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  161 bits (407), Expect = 2e-44
 Identities = 52/318 (16%), Positives = 99/318 (31%), Gaps = 53/318 (16%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L S+ +  P     R   +P  +  +L      ++  AA  L ++     +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIA-MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218
            +P+ V LL  P  +V   A  AL NI+ G     +  + +  G+  L+  L     + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI------------------HSNDDEVL 260
               T TL N          + V  AL AL   +                  H   + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV----------- 309
           T+    L  +S   ++  + + E         F++           + V           
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 310 ---------------------GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348
                                 N  T      + + + + +   ++LL  +   +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 349 CWTVSNITAGNREQIQVI 366
              + N+ AG     + I
Sbjct: 330 AGAIQNLCAGRWTYGRYI 347

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 86.9 bits (214), Expect = 1e-18
 Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 2/154 (1%)

Query: 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273
           P     R +  +L +  +G P PP  +  P LP +  ++    D V ++A   L +L   
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR 78

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC-VIEYQALPCL 332
            +     V +    P L   L HP   V + A   + NI  G D   +  +     +P L
Sbjct: 79  NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVI 366
           + LL       + +    T+ N+++ +  +++++
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV 172

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 83.5 bits (205), Expect = 1e-17
 Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 11/222 (4%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
           P  Q E     +  +               +P  + +L    D V+  A   L ++   +
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP--ALPAL 248
            + +  V    G+  L+  L+  PK  +   A   L N   G+ Q     +     +PAL
Sbjct: 80  DKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 249 AHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR 307
             L+  + D ++       L  LS   + K++ V  A     L + ++ P          
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL--HALTDEVIIPHSGWEREPNE 196

Query: 308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349
                           +      CL N+ S   +   K   C
Sbjct: 197 DCKPRHIEW-----ESVLTNTAGCLRNVSSERSEARRKLREC 233

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 83.5 bits (205), Expect = 1e-17
 Identities = 51/335 (15%), Positives = 109/335 (32%), Gaps = 68/335 (20%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------------- 129
           + D  +    T     L ++     I+  I    +    + ++                 
Sbjct: 145 ARDMDLTEVIT---GTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201

Query: 130 ---YPQLQFEAAWALTNIASGTSEHTKVVIDH-GAVPIFVKLLYS------PSDDVREQA 179
              +  +    A  L N++S  SE  + + +  G V   + ++ +          + E  
Sbjct: 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261

Query: 180 VWALGNIAGD-------------------------SPRCRDLVLSQGGLVPLLAQLNGQP 214
           V  L N++                             R  +L+     +   ++ L    
Sbjct: 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK 321

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSP-----ALPALAHLIHSNDDEVLTDACWALSY 269
             ++L  +   + N C G+        S      AL A+A L+ +  + V+  A  AL  
Sbjct: 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381

Query: 270 LSDGTNDKIQAVIEAGVFPRLAEFL--------MHPSPSVLIPALRTVGNIVTGDDMQTQ 321
           L+   + + + +I     P L + L         + S   +I  L T+  ++  +    +
Sbjct: 382 LA--VDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK 439

Query: 322 CVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNI 355
            + E Q +  L+ +  SGN  +   + A   +  I
Sbjct: 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 83.5 bits (205), Expect = 2e-17
 Identities = 30/234 (12%), Positives = 66/234 (28%), Gaps = 41/234 (17%)

Query: 72  LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYP 131
           L NL   V            E             +   E + +  VV  ++  L     P
Sbjct: 265 LRNLSYQVHREIPQAER-YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP 323

Query: 132 QLQFEAAWALTNIASGTSEHT----KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
            +   +A A+ N+ +G   +       +    A+     LL +  + V + A  AL N+A
Sbjct: 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383

Query: 188 GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247
            D+      ++ +  +  L+  L G                                   
Sbjct: 384 VDARNKE--LIGKHAIPNLVKNLPG----------------------------------G 407

Query: 248 LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
             +   +  ++ +      ++ +     +  + + E     +L       + S 
Sbjct: 408 QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  140 bits (354), Expect = 1e-39
 Identities = 39/214 (18%), Positives = 66/214 (30%), Gaps = 20/214 (9%)

Query: 118 VPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           + R V  L  +   P     AA  + +     SE  K V     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
                AL N+  +    +  V    G+  LL  L     L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 237 PFDQVSPALPALAHLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQA 280
               ++ AL  L   I                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 281 VIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +    G+   L  ++            +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 70.0 bits (171), Expect = 6e-14
 Identities = 19/131 (14%), Positives = 49/131 (37%), Gaps = 2/131 (1%)

Query: 240 QVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
            +   L     ++ ++      ++ A   + +     ++  + V +     +L + L   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           +  V       + N+V  D+     V E   +P LL +L        KK+    + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 358 GNREQIQVIMH 368
            ++ +  +I  
Sbjct: 125 NDKLKNLMITE 135

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 67.7 bits (165), Expect = 4e-13
 Identities = 30/181 (16%), Positives = 59/181 (32%), Gaps = 21/181 (11%)

Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLT 261
            V +L   +  P  S +  A   + + C  K +          +  L  L+   +++V  
Sbjct: 13  AVSMLEADHMLP--SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQR 70

Query: 262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQT 320
             C AL  L    ND    V E    PRL + L               + N+ + D ++ 
Sbjct: 71  AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN 130

Query: 321 QCVIEYQALPCLLNLL---------------SGNYKKSIKKEACWTVSNITAGNREQIQV 365
             ++  +AL  L   +               +G     I       + N+++   +  + 
Sbjct: 131 --LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 366 I 366
           +
Sbjct: 189 M 189

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  ++  +   +  VQ       R  L  E +    EV     VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP----------------SDDVREQ 178
            +    L N++S   +  K ++   A+    + +  P                  D+   
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN 170

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNFC 230
               L N++      R  +    GL+  L         + QP      N    L N  
Sbjct: 171 VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 273 GTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330
           G+N  ++  +      R    L   H  PS +  A   + +         + V + + + 
Sbjct: 1   GSNADMEMTL-----ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGIL 55

Query: 331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVA 377
            LL LL     + +++  C  + N+   + +    +  ++    ++ 
Sbjct: 56  KLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQ 101

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  144 bits (365), Expect = 6e-38
 Identities = 47/351 (13%), Positives = 105/351 (29%), Gaps = 42/351 (11%)

Query: 65  APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
             G A KL             D  ++          L+++     + +     +   ++ 
Sbjct: 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALMD- 428

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHT-------------------------------- 152
           L R       +       N+ +   +                                  
Sbjct: 429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488

Query: 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212
            V+ + G       L  + S + +E     L  + G     R  V+ +GG+  LL     
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALE 547

Query: 213 QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSP--ALPALAHLIHSNDDEVLT-DACWALS 268
             +    R+AT  L+       P+  F        +  L +L+  +   +   ++  AL+
Sbjct: 548 GTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606

Query: 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328
            L+       Q +I+     ++  +LM     +   A + + N+V  +D+          
Sbjct: 607 NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDR 666

Query: 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV-HAFSIIVAF 378
           +  L  L      +         ++ IT+ + +  + I+ +     I+   
Sbjct: 667 VKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  121 bits (304), Expect = 6e-30
 Identities = 33/272 (12%), Positives = 74/272 (27%), Gaps = 5/272 (1%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
           I  +   G+       L + +    Q   A  L  +  G  E    V+  G V   +++ 
Sbjct: 488 ITVLANEGITTALCA-LAKTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMA 545

Query: 169 YSPSDDVREQAVWALGNIA--GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
              ++  +  A  AL  I    +         S   + PLL  L           +   L
Sbjct: 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605

Query: 227 SNFCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285
           +N            +    +  + + +  +   +   A   L  L    +          
Sbjct: 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665

Query: 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345
               LA                 +  I +      + ++   +   +L+ L  N   +++
Sbjct: 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725

Query: 346 KEACWTVSNITAGNREQIQVIMHVHAFSIIVA 377
                 + N+     E  + +       ++  
Sbjct: 726 HRGIVIILNMINAGEEIAKKLFETDIMELLSG 757

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  119 bits (299), Expect = 3e-29
 Identities = 40/291 (13%), Positives = 92/291 (31%), Gaps = 24/291 (8%)

Query: 97  FRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-TKVV 155
             ++         +       +  +++  L     + +     A+T + +G  +   +VV
Sbjct: 228 LARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVV 286

Query: 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK 215
              G + + + +  +  +  +  A   L   +         +  QG  V +L +L     
Sbjct: 287 AREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VDILKRLYHSKN 343

Query: 216 LSMLRNATWTLSNFC-----RGKPQPPFDQVSPALPALAH---LIHSNDDEVLTDACWAL 267
             +   A   L             +P  D  +  L        +    D ++   A   L
Sbjct: 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGL 403

Query: 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327
           +YL+     K + + +      L +     + S L   + T  N+    + Q        
Sbjct: 404 AYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM------ 457

Query: 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAF 378
            LP ++ L     K+ I +E      +      ++I V+ +    + + A 
Sbjct: 458 -LPEMIELAKFA-KQHIPEEHEL---DDVDFINKRITVLANEGITTALCAL 503

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  116 bits (292), Expect = 2e-28
 Identities = 33/230 (14%), Positives = 65/230 (28%), Gaps = 4/230 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLL-SIERSPPIEEVIRSGVVPRFVEFLLREDYPQL 133
           +  ++          +   T    ++  +I             V+   +  L ++     
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
            FE+  ALTN+AS      + +I    V      L      +   A   L N+   S   
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDV 656

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHL 251
             +       V  LA L               L+       +     ++ A  L  L  L
Sbjct: 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716

Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           I +    V       +  + +   +  + + E  +   L+     P  + 
Sbjct: 717 IANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTR 766

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  114 bits (285), Expect = 1e-27
 Identities = 58/411 (14%), Positives = 111/411 (27%), Gaps = 50/411 (12%)

Query: 14  NKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLE 73
            +    +  DE + R  D + E  K+K      + +         L N     G      
Sbjct: 229 ARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAR 288

Query: 74  N--LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYP 131
              L +++A   ++D   Q         L++        + +    V   ++ L      
Sbjct: 289 EGILQMILAMATTDDELQQRVAC---ECLIAASSKKDKAKALCEQGVD-ILKRLYHSKND 344

Query: 132 QLQFEAAWALTNIASGTSEHTKVVID-HGAVPIFVKLL------YSPSDDVREQAVWALG 184
            ++  A   L  + S   +   +     GA     +             D+R  A   L 
Sbjct: 345 GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA 404

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-------- 236
            +  D   C++ ++     +  L  L      S L     T  N C    +         
Sbjct: 405 YLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463

Query: 237 -------------PFDQVSP------------ALPALAHLIHSNDDEVLTDACWALSYLS 271
                          D V                 AL  L  +            L+ + 
Sbjct: 464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC 523

Query: 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIEYQAL 329
                +   V++ G    L    +  +      A + +  I    +  +          +
Sbjct: 524 GLKELR-GKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFF 380
             LLNLL  +       E+   ++N+ + N    Q I+     S I  +  
Sbjct: 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM 633

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 92.6 bits (229), Expect = 2e-20
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              +   +E       L S+  +  + + I        +E+ L ED+  L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASM--NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL 203
           +            ++  V     L     ++       AL  I   S +C + +L+    
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTD 262
           + +L  L   P  ++       + N      +          +  L+ L    DD     
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
              A   L+     +I    +    P +  
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 90.5 bits (224), Expect = 5e-21
 Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 21/197 (10%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++ +    L + +   L  E A A   +A    E  K +I     P+         +  +
Sbjct: 70  MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTK 124

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
               +AL  IA  +P     ++     + +L+  N + KL+ L        NF     + 
Sbjct: 125 INVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGEN 174

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            F  V+P LP + +L+H  D+ V   A  AL +L+   +   + VI      +  E L  
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND 228

Query: 297 PSPSVLIPALRTVGNIV 313
            S  V       +  ++
Sbjct: 229 TSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 73.6 bits (180), Expect = 5e-15
 Identities = 32/209 (15%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           V+ + +E LL +D   +   A   +  IA    +  + ++      +F  L  S +  + 
Sbjct: 33  VLKKLIE-LLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
           ++   A G +A + P           ++P+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
               ++  +     ++ S + E    A   +  + + +   +   +     PR+   L  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIE 325
               V   A+  + ++ T +D   + VI+
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVIK 221

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 32/238 (13%), Positives = 61/238 (25%), Gaps = 51/238 (21%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L +  +    +E+ R          LL +     +  +A  L                  
Sbjct: 16  LYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG-----------GQD 54

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
           AV + ++     +   R+   + LG I     +C D V +      L           + 
Sbjct: 55  AVRLAIEFCSDKNYIRRDIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVR 108

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
             A  + +  C+  P          +             V     +A+S ++D       
Sbjct: 109 ATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND------- 157

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
                   P L   L  P+  V   A   +      +              C + +L 
Sbjct: 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQ 202

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 33/148 (22%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
              +    ++   A+A++ I            D   +P+ + LL  P+ DVR  A +A+ 
Sbjct: 136 TAFDKSTNVRRATAFAISVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAIN 184

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
               D+            +     ++       +   A   LS       +         
Sbjct: 185 INKYDNSD----------IRDCFVEMLQDKNEEVRIEAIIGLSYR--KDKR--------V 224

Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSD 272
           L  L   +    + V  D   A   L D
Sbjct: 225 LSVLCDEL--KKNTVYDDIIEAAGELGD 250

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 62.1 bits (151), Expect = 4e-13
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 11 SRRNKYK-VAVDADEGRRRREDNMVEIRKNKREESLQKKRR 50
          +R +++K    D+ E RRRR +  VE+RK K+++ + K+R 
Sbjct: 2  ARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 46/245 (18%), Positives = 74/245 (30%), Gaps = 57/245 (23%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V  +++  L++D   ++  AA+AL  I            D  AV   +K L      VR 
Sbjct: 21  VEMYIK-NLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  ALG I  +              V  L +        + ++A   L     G  +  
Sbjct: 69  AAADALGQIGDER------------AVEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 112

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                 A+  L   +   D  V   A +AL  + D      +AV        L + L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A   +G I  G +         +    +  L         +K A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAE-TGTGFARKVAVNYLETHKS 203

Query: 358 GNREQ 362
            N   
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 38/181 (20%), Positives = 53/181 (29%), Gaps = 44/181 (24%)

Query: 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL 216
           D   V +++K L   S  VR  A +ALG I     R           V  L +       
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--DERA----------VEPLIKALKDEDA 64

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276
            + R A   L                 A+  L   +   D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
                        L + L      V I A   +G I  GD+         +A+  L+  L
Sbjct: 111 -------ERAVEPLIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 337 S 337
            
Sbjct: 153 K 153

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 43/219 (19%), Positives = 68/219 (31%), Gaps = 56/219 (25%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V  +++  L++D   ++  AA+AL  I            D  AV   +K L      VR 
Sbjct: 16  VEMYIK-NLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  ALG I     R           V  L +        + ++A   L     G  +  
Sbjct: 64  AAADALGQIG--DERA----------VEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 107

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                 A+  L   +   D  V   A +AL  + D      +  +E      L + L   
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
              V   A   +G I  G +         +    +  L 
Sbjct: 151 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA 178

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 53/219 (24%)

Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG---------------- 116
           E + + +  +  +   V+        K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 117 ---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
               V   ++  L+++   ++  AA AL  I            D  AV   +K L     
Sbjct: 74  DERAVEPLIK-ALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
            VR  A +ALG I  +              V  L +        + ++A   L       
Sbjct: 122 FVRIAAAFALGEIGDERA------------VEPLIKALKDEDGWVRQSAADALGEI---- 165

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
                        A+  L  +        A   L     
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 62.5 bits (151), Expect = 1e-10
 Identities = 39/289 (13%), Positives = 77/289 (26%), Gaps = 22/289 (7%)

Query: 109 IEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165
           +  V R  ++P  +  L   L      ++      L  IA G  +     +    +P  +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406

Query: 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225
           + L      VR    W L   A            +  +  LL ++    K  +   A   
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465

Query: 226 LSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285
            +             ++  L  L         + L     A+  L         +V    
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL-------ADSVGHHL 518

Query: 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345
             P   + LM        P L    N++  +D     ++E   L  +   L   +    +
Sbjct: 519 NKPEYIQMLM--------PPLIQKWNMLKDEDKDLFPLLE--CLSSVATALQSGFLPYCE 568

Query: 346 KEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKL 394
                 V+ +     + +        +      F +        +   L
Sbjct: 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGL 617

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 29/231 (12%), Positives = 61/231 (26%), Gaps = 23/231 (9%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG-LVPLLAQLNGQPKL--- 216
           +P+ V  +     D+        G   GD       +       + +LA +     L   
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI 360

Query: 217 -----SMLRNATW--------TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDA 263
                 +L +  W         L     G  Q     +   +P L   +      V +  
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420

Query: 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323
           CW LS  +     +        +   L + ++  +  V   A      +    +     +
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE---EEACTEL 477

Query: 324 IEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
           + Y    L  L+   S  Y+          +  +       +    ++   
Sbjct: 478 VPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQML 527

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 60.2 bits (145), Expect = 7e-10
 Identities = 44/235 (18%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 111 EVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167
           +   + ++   +EF+   +  D  + +  A  A  +I  G  +  +    H A+P  + L
Sbjct: 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419

Query: 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP----LLAQLNGQPKLSMLRNAT 223
           +   S  V+E   W +G IA       + +  Q  L       L  L   PK++   N +
Sbjct: 420 MNDQSLQVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCS 474

Query: 224 WTLSNFCRGKPQPPFDQVSPALPA-LAHLIHS-----NDDEVLTDACWALSYLSDGTNDK 277
           WT+ N      +     +    PA +  LI +     N+      A  AL+ + +   D 
Sbjct: 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534

Query: 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332
           +     + +   + + L           +    N +T +D Q+   ++   L  L
Sbjct: 535 VAETSAS-ISTFVMDKLGQ--------TMSVDENQLTLEDAQSLQELQSNILTVL 580

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 28/226 (12%), Positives = 79/226 (34%), Gaps = 10/226 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLS----IERSPPIEEVIRSGVVPRFVEFLLREDY 130
           +  +   + S+   ++   +   + ++           +   +   +  R    + +++ 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
             +Q EA   + ++ S              +   +  L SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
             C ++V     +  LL++L+    +S  R     ++   R       + +   +P +  
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             + +DDE+      A          ++   +   +     ++L +
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKYLTY 307

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.1 bits (118), Expect = 9e-07
 Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 25/234 (10%)

Query: 123  EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
            +         ++  A  +L  +        ++ +      + ++   SPS++V+  A +A
Sbjct: 824  DVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYA 879

Query: 183  LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSNFCRGKPQPPFDQV 241
            LG+I+  +            L  +L ++  QPK   +L ++   + +        P+  V
Sbjct: 880  LGSISVGNLPEY--------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--V 929

Query: 242  SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
                  L       ++         L         K+  +    + PRL  +L+  S   
Sbjct: 930  ENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLISGSSYA 981

Query: 302  LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
                +  V   ++ D  Q    +    +   L  L      ++++ A  T ++ 
Sbjct: 982  RSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSA 1033

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 53.3 bits (127), Expect = 3e-08
 Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 25/228 (10%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQG--GLVPLLAQLNGQPKL 216
           A+ + ++L     +  R +A  ALG I   +    R +VL +     +  L+Q N +  +
Sbjct: 34  ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTI 93

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV---LTDACWALSYLSDG 273
             LR   + + +   G           A   L  L+ S DD +     D    L  L D 
Sbjct: 94  KALRALGYLVKDVPMGS-----KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS 148

Query: 274 --TNDKIQAVIEAGV-------FPRLAEFLMHPS-PSVLIPALRTVGNIVTGDDMQTQCV 323
                 I  ++ +         F      L   +    L   L  + +++  D+     +
Sbjct: 149 KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVEL 208

Query: 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
               AL  L   LS    +++K E       +      +   I+ + A
Sbjct: 209 ----ALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKA 252

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 34/208 (16%), Positives = 66/208 (31%), Gaps = 13/208 (6%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L +++     +D   +        ++L    S     V+    +  F+   L ++  ++ 
Sbjct: 35  LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALSQENEKVT 92

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG--NIAGDSPR 192
            +A  AL  +       +K  +   A    V LL SP D +R + +  L       DS  
Sbjct: 93  IKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKL 150

Query: 193 CRDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFCRGKPQPPFDQVS-PAL 245
            R  +        L  ++ G          S        + +      Q   + +   AL
Sbjct: 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELAL 210

Query: 246 PALAHLIHSNDDEVLTDACWALSYLSDG 273
             L   +     E +      +S + DG
Sbjct: 211 DVLEKALSFPLLENVKIELLKISRIVDG 238

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 34/143 (23%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
            + ++   ++ + + AL+ +               A    ++ L +    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
           N      R           V  L +L       +   A  +L     G  +         
Sbjct: 68  NFQ--DERA----------VEPLIKLLEDDSGFVRSGAARSLEQI--GGER--------V 105

Query: 245 LPALAHLIHSNDDEVLTDACWAL 267
             A+  L  +        A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS 172
           +        +E  L  +  +++  AAW + N             D  AV   +KLL   S
Sbjct: 39  MGDEAFEPLLE-SLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDS 86

Query: 173 DDVREQAVWALGNIAGDS 190
             VR  A  +L  I G+ 
Sbjct: 87  GFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 34/142 (23%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +      +   +  VR     AL  +  ++              PLL  L+      + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDEA------------FEPLLESLS-NEDWRIR 59

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
             A W + NF     +        A+  L  L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF--QDER--------AVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 280 AVIEAGVFPRLAEFLMHPSPSV 301
            V  A     + +     +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 11/60 (18%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           LL +D   ++  AA +L  I                     KL  + +   R+ AV  L 
Sbjct: 81  LLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE 129

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 77/465 (16%), Positives = 133/465 (28%), Gaps = 150/465 (32%)

Query: 2   SLRPNSKADSR-RNKYKVAVDADEGRRRREDNMVEIRKN-KREESLQKKRREGLQNQQP- 58
            ++   +  S     Y    D     R   DN V  + N  R +    K R+ L   +P 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPA 150

Query: 59  ---------------LANDVNAPGTAKKLENLPVMVAGV-WSNDSGVQYECTT------Q 96
                          +A DV         +    M   + W N       C +       
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-----CLSYKVQCKMDFKIFWLN-LK---NCNSPETVLEM 201

Query: 97  FRKLLS---------IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
            +KLL           + S  I+  I S +       L  + Y          L      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYEN-------CL------ 247

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPL 206
                 +V+                 +V+    W   N+      C+ L+ ++   +   
Sbjct: 248 ------LVL----------------LNVQNAKAWNAFNL-----SCKILLTTRFKQVTDF 280

Query: 207 LAQLNGQPKLSMLRNATWT-------LSNFCRGKPQ--PP-FDQVSP-ALPALAHLIHSN 255
           L+            + T T       L  +   +PQ  P      +P  L  +A  I   
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-- 338

Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGV-----------FPRLAEFLMHPSPSVLIP 304
            D + T   W          DK+  +IE+ +           F RL+ F   P PS  IP
Sbjct: 339 -DGLAT---W--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---P-PSAHIP 388

Query: 305 A--LRTV-GNIVTGDDMQ--TQCVIEYQALPCLLNLLSGNYKK------SIKKEACWTVS 353
              L  +  +++  D M    +            +L+    K+      SI  E    + 
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKL--------HKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 354 NITAGNR---EQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLA 395
           N  A +R   +   +     +  +I  +   + +   G   + L 
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLK 482

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 47/297 (15%), Positives = 93/297 (31%), Gaps = 77/297 (25%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS---GTSEH 151
           +   +L     S          +V +FVE +LR +Y        + ++ I +     S  
Sbjct: 62  SGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMM 108

Query: 152 TKVVID-----HGAVPIFVKLLYSPSDDV-REQAVWALGN-IAGDSPRCRDLVL-SQGG- 202
           T++ I+     +    +F K       +V R Q    L   +    P  +++++    G 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPA-KNVLIDGVLGS 161

Query: 203 ----LVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257
               +   +   + + +  M     W  L N C   P    + V   L  L + I  N  
Sbjct: 162 GKTWVALDVCL-SYKVQCKMDFKIFWLNLKN-CN-SP----ETVLEMLQKLLYQIDPNWT 214

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALRTVGNIVTGD 316
                        SD +   I+  I + +   L   L      + L+        ++   
Sbjct: 215 S-----------RSDHS-SNIKLRIHS-IQAELRRLLKSKPYENCLL--------VL--L 251

Query: 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS 373
           ++Q         L C + L +    K +          ++A     I +  H    +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRF--KQV-------TDFLSAATTTHISLDHHSMTLT 299

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 14/232 (6%)

Query: 107 PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166
           P +   +++ +   F   L  +D P ++  AA  L   A          +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
           L     D VR  AV A  NIA   P+     L    ++P L Q        +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEAL----VMPTLRQAAEDKSWRVRYMVADKF 266

Query: 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAG 285
           +     K   P    +  +PA  +L+   + EV   A   +    +  + D  + VI + 
Sbjct: 267 TELQ--KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
           + P + E +   +  V       +  +     +     IE+  LP  L  L 
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLSPI--LGKDNTIEH-LLPLFLAQLK 373

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 29/231 (12%), Positives = 73/231 (31%), Gaps = 20/231 (8%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVK 166
            ++     ++P F+   L+++ P+++      L  +    G  + ++ ++     P  V+
Sbjct: 356 GKDNTIEHLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL-----PAIVE 409

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
           L       VR   +  +  +A        +      L  L          ++   AT  L
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLA----GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNL 465

Query: 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
                   +      +  +P +  +    +        + ++ LS+      Q +    +
Sbjct: 466 KKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHM 520

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
            P +      P  +V     +++  I    D      ++ +  P L  L  
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQ 568

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 27/227 (11%), Positives = 69/227 (30%), Gaps = 17/227 (7%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP+ +A +      V+    +    +  +     + + +    +P  VE L  +   +++
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL----LPAIVE-LAEDAKWRVR 419

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
                 +  +A           D     + +  L      +RE A   L  +     +  
Sbjct: 420 LAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
                   ++P +  ++G P         + ++       Q    +    LP +  +   
Sbjct: 477 AHAT----IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH--MLPTVLRMAGD 530

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
               V  +   +L  +    ++     +++ V P L +        V
Sbjct: 531 PVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQDVDV 574

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 23/257 (8%)

Query: 109 IEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167
           I+E +R+ +   +++ L R  +   +Q  +A  L    S T      +       IF+  
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342

Query: 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
           +        E +V AL  ++  +     +  ++     LL  +  Q     L      ++
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402

Query: 228 NFCRGKPQPPFDQVSPALPALAHLI-----HSNDDEVLTDACWALSYLSDGTNDKIQAVI 282
           N      +                           E             D      + ++
Sbjct: 403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYIL 454

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN- 339
              +   L   + + SP+     +R + NI    +   Q     Q  A+  +L  L+   
Sbjct: 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA---QQGAVKIILEYLANKQ 511

Query: 340 -YKKSIKKEACWTVSNI 355
              + I+   C  ++ +
Sbjct: 512 DIGEPIRILGCRALTRM 528

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 90  QYECTTQFRKLLSIERSPPIEEVIRSGVVPRF---VEFLLREDYPQLQFEAAWALTNIAS 146
            YE       L S E S   E          +   +E L+ ++   LQ      ++N+ S
Sbjct: 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635

Query: 147 GTSEHTKVVIDHG------AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
                     +           I VKLL     + +        NIA   P     +L++
Sbjct: 636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695

Query: 201 GGLVPLLAQL 210
             L+    Q+
Sbjct: 696 KELIENAIQV 705

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 50.2 bits (119), Expect = 9e-07
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 29/177 (16%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
               +  +L  D   L++  A+ +    +GT  ++ V        +    +   +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            AV ALG +                +  ++  L+      +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
                 A+  L  L     D V   A  ALS +     +K+         P++A+  
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN--------PQVADIN 690

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 56/339 (16%), Positives = 94/339 (27%), Gaps = 41/339 (12%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              + V+   T      L   ++   +E  R  ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL---VLSQ 200
           I S   ++ +  +      I ++ + S  D+V  Q +    N+  +             Q
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 201 GGLVPLLAQLNGQPKLSML-----------------------RNATWTLSNFCRGKPQPP 237
           G      ++   +  L  L                       + A   L           
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
              V P +      I + D      A  A   + +G        +     P L E +  P
Sbjct: 364 VPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 298 SPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           S  V   A  TVG I     +       +    L CL+  LS      +    CW  S++
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAE--PRVASNVCWAFSSL 477

Query: 356 TAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKL 394
                E   V                 L   F  I+ KL
Sbjct: 478 AEAAYEAADVADD------QEEPATYCLSSSFELIVQKL 510

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 9/181 (4%)

Query: 109 IEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165
           +       +VP  + F+   ++    + +  A  A   I  G        +   A+P  +
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414

Query: 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNAT 223
           +L+  PS  VR+ A W +G I        +  ++   L PLL  L      +  +  N  
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICEL---LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283
           W  S+      +   D          + + S+ + ++              N+   +  E
Sbjct: 472 WAFSSLAEAAYE-AADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE 530

Query: 284 A 284
           +
Sbjct: 531 S 531

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 42/299 (14%), Positives = 87/299 (29%), Gaps = 24/299 (8%)

Query: 97  FRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156
              L+ + ++   +  I    +      +  ++  +++  +     ++ S  +E    + 
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTE--IFIK 119

Query: 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPK 215
               V + + LL      VR   V  L ++      + + ++L     V  L  L    +
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 216 LSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYL 270
             +  +    L    R             A   L  +I     S+   V+ D    L  L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV---------------LIPALRTVGNIVTG 315
               N       E     R+  +      +                L+  L +  N    
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299

Query: 316 DDMQTQCVIEYQALPCLLNL-LSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS 373
                + + +   L  L  + ++      I  E   TVS +  G +        V+A S
Sbjct: 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPS 358

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 47/282 (16%), Positives = 80/282 (28%), Gaps = 33/282 (11%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              + V+   T      L   ++   +E  R  ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS---- 199
           I S   ++ +  +      I ++ + S  D+V  Q +    N+  +              
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 200 ---------------QGGLVPLLAQLN-------GQPKLSMLRNATWTLSNFCRGKPQPP 237
                             LVP+L Q              +  + A   L           
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
              V P +      I + D      A  A   + +G        +     P L E +  P
Sbjct: 364 VPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 298 SPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLS 337
           S  V   A  TVG I     +       +    L CL+  LS
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLS 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.98
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.98
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.88
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.79
3grl_A	651	General vesicular transport factor P115; vesicle t	99.77
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.76
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.75
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.74
3grl_A	651	General vesicular transport factor P115; vesicle t	99.71
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.65
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.64
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.63
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.63
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.62
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.61
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.6
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.59
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.59
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.57
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.56
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.56
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.53
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.53
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.49
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.47
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.41
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.34
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.34
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.23
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.16
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.14
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.09
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.09
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.01
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.9
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.88
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.88
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.85
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.84
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.82
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.82
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.81
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.75
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.72
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.67
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.54
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.53
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.53
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.41
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.31
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.18
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.17
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.04
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.01
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.98
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.97
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.97
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.85
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.84
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.8
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.67
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.65
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.52
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.45
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.43
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.43
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.37
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.27
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.19
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.17
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.16
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.13
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.07
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.94
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.76
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.72
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.71
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.54
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.22
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.01
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.01
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.86
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.86
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.83
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.8
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.72
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.61
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	95.56
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.01
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	94.93
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.47
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.85
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	93.76
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	93.72
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.49
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	93.21
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.03
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	92.18
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	91.57
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	91.39
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	89.59
2jak_A	392	Serine/threonine-protein phosphatase 2A 56 kDa RE	89.49
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	88.46
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	86.79
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	83.61
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	83.55
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	82.85
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	80.64
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	80.05

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.3e-63  Score=485.66  Aligned_cols=398  Identities=45%  Similarity=0.700  Sum_probs=317.8

Q ss_pred             CCCCCCC-CchHhhhhcCC-CCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhccccCCC-CCccCCCCCchhhhhcCHHH
Q 015537            1 MSLRPNS-KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQ-PLANDVNAPGTAKKLENLPV   77 (405)
Q Consensus         1 ~~~~~~~-~~~~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~l~~   77 (405)
                      ||.+++. .+++|+++||+ ++|++|+||||++++++|||+||+|+++|||+.....++ ..+..............++.
T Consensus         1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (529)
T 3tpo_A            1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED   80 (529)
T ss_dssp             -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence            7886664 67899999998 999999999999999999999999999999987543322 12222111111122246899


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 015537           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (405)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~  157 (405)
                      +++.++|+|++.|+.|+..++++++.+++++++.+++.|++|.|+++|..++++.++.+|+|+|+|++.++++++..+++
T Consensus        81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999889999999999999999999987666999999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC----chhHHHHHHHHHHHhhcCC
Q 015537          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       158 ~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~----~~~~~~~a~~~l~~l~~~~  233 (405)
                      .|+||.|+.+|.++++.++++|+|+|+||+.+++.+++.+.+.|++++|+.++....    ...+++.++|++++++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999994332    2457899999999999987


Q ss_pred             -CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       234 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                       +........+++|.|+.++.+++++++.+++|+|++++.++.+..+.+++.|+++.|+.+|.++++.++.+++++|+|+
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence             6666777789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY  392 (405)
Q Consensus       313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr  392 (405)
                      +++++..+..+++.|+++.|+.++.++ ++.++++|+|+|+||+++++++++.+++.|++|.|+.+|.+..     +.+|
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-----~~v~  394 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-----FKTQ  394 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-----HHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-----HHHH
Confidence            999999999999999999999999998 9999999999999999999999999999999999999998763     4699


Q ss_pred             HHHHHHHhhhcc
Q 015537          393 KLAIWLCLVTCC  404 (405)
Q Consensus       393 ~~A~~al~n~~~  404 (405)
                      ++|+|||+|+|+
T Consensus       395 ~~A~~aL~nl~~  406 (529)
T 3tpo_A          395 KAAAWAITNYTS  406 (529)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999999974

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=7.9e-57  Score=441.48  Aligned_cols=398  Identities=75%  Similarity=1.146  Sum_probs=315.8

Q ss_pred             CCCCCCCCchHhhhhcCCCCCchHHhhhhhHHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhhcCHHHHHH
Q 015537            1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVA   80 (405)
Q Consensus         1 ~~~~~~~~~~~r~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~   80 (405)
                      |+++++.++++|+++||++++++|+|+||+++.++|||+||+|+++|||++....+...+. ..........+.+|.+++
T Consensus         3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~l~~lv~   81 (528)
T 4b8j_A            3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPA-SAATGVDKKLESLPAMIG   81 (528)
T ss_dssp             ------------------------CCCCC-----------------CCCC-----------------------CHHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCccccccc-ccccchhhhHHHHHHHHH
Confidence            7888888899999999999999999999999999999999999999999974332221010 111111223467999999


Q ss_pred             hhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCC
Q 015537           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (405)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~  160 (405)
                      .|.++++..+..|++.|+++++.+.+++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+
T Consensus        82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~  161 (528)
T 4b8j_A           82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA  161 (528)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence            99999999999999999999988755889999999999999999998765899999999999999998999999999999


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhh
Q 015537          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (405)
Q Consensus       161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  240 (405)
                      ++.|+.+|.++++.+++.|+|+|+||+.+++.++..+...|++++|+.++..+.+..++..++|+|.+|+.+.+......
T Consensus       162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  241 (528)
T 4b8j_A          162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ  241 (528)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence            99999999999999999999999999999998999999999999999999777899999999999999999877777777


Q ss_pred             hhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhH
Q 015537          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (405)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~  320 (405)
                      ..+++|.|+.++.++++.++..++|+|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...
T Consensus       242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  321 (528)
T 4b8j_A          242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT  321 (528)
T ss_dssp             HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence            79999999999999999999999999999999988888889999999999999999999999999999999999999999


Q ss_pred             HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       321 ~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                      +.+++.|+++.|+.+|.++.++.++++|+|+|+|++.+++++++.+++.|++|.|+.+|.+.     ++.+|++|+|+|+
T Consensus       322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~v~~~a~~aL~  396 (528)
T 4b8j_A          322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-----EFDIKKEAAWAIS  396 (528)
T ss_dssp             HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-----CHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-----CHHHHHHHHHHHH
Confidence            99999999999999999876789999999999999999999999999999999999999865     2479999999999


Q ss_pred             hhcc
Q 015537          401 VTCC  404 (405)
Q Consensus       401 n~~~  404 (405)
                      |++.
T Consensus       397 nl~~  400 (528)
T 4b8j_A          397 NATS  400 (528)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9873

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=5.6e-53  Score=414.18  Aligned_cols=393  Identities=49%  Similarity=0.737  Sum_probs=337.1

Q ss_pred             CCCCchHhhhhcCC-C-CCchHHhhhhhHHHHHHHHHhhhHHHHhhhhcccc---CCCCCccC----CCCCchhhhhcCH
Q 015537            5 PNSKADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ---NQQPLAND----VNAPGTAKKLENL   75 (405)
Q Consensus         5 ~~~~~~~r~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~---~~~~~~~~----~~~~~~~~~~~~l   75 (405)
                      +..+++.|++.||+ + +|++|+||||+++.++|||+||++++.|||+....   .+..++.+    ..........+.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   89 (530)
T 1wa5_B           10 SKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQEL   89 (530)
T ss_dssp             --CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCH
T ss_pred             CCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHH
Confidence            34467889999999 8 99999999999999999999999999999997542   11110100    0001000122569


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~  155 (405)
                      +.+++.|+++++..+..|+..|+++++.+.+++++.+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+
T Consensus        90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~  169 (530)
T 1wa5_B           90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV  169 (530)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999998876567788899999999999999987338999999999999999988999999


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-C
Q 015537          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P  234 (405)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~  234 (405)
                      ++.|+++.|+.+|.++++.+++.|+|+|++|+.+++..++.+...|++++|+.++ .+.+..++..++|+|++|+.+. +
T Consensus       170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999988999999999999999999 5588999999999999999987 6


Q ss_pred             CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      ........+++|.|+.++.++|+.++..++|+|++++...++..+.+++.|+++.|+.+|.+.++.++..|+++|++++.
T Consensus       249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence            66677778999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHH
Q 015537          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKL  394 (405)
Q Consensus       315 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~  394 (405)
                      +++...+.+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++++++.+++.|++|.|+.+|.+.     ++.+|++
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~v~~~  402 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-----EYKTKKE  402 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-----CHHHHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-----CHHHHHH
Confidence            9998888899999999999999999 999999999999999999999999999999999999999754     3479999


Q ss_pred             HHHHHhhhcc
Q 015537          395 AIWLCLVTCC  404 (405)
Q Consensus       395 A~~al~n~~~  404 (405)
                      |+|+|+|+|.
T Consensus       403 a~~aL~~l~~  412 (530)
T 1wa5_B          403 ACWAISNASS  412 (530)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999973

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=4.8e-51  Score=397.37  Aligned_cols=369  Identities=45%  Similarity=0.708  Sum_probs=305.9

Q ss_pred             hhHHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCc
Q 015537           29 REDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP  108 (405)
Q Consensus        29 r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~  108 (405)
                      |....++.|+++++....+.++.....++....+.. ......-..++.+++.++|+|++.|+.|+..+|+++|.+++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~pp   92 (510)
T 3ul1_B           14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIG-SNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP   92 (510)
T ss_dssp             ----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCC
T ss_pred             CCcccHHHHHHHHHhhccCCccccCCccccchhhhc-cccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCch
Confidence            334456777777777777666554433322111111 1111111368999999999999999999999999999998999


Q ss_pred             hHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 015537          109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG  188 (405)
Q Consensus       109 ~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~  188 (405)
                      ++.+++.|++|.|+++|+.++++.+|.+|+|+|+||++++++++..+++.|+||.|+.+|.+++++++++|+|+|+||+.
T Consensus        93 i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~  172 (510)
T 3ul1_B           93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  172 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999876668999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHhcCChHHHHHhhhCCC----chhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHH
Q 015537          189 DSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDA  263 (405)
Q Consensus       189 ~~~~~~~~i~~~~~i~~L~~~l~~~~----~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a  263 (405)
                      +++.+++.+.+.|++++|+.++....    ...+++.++|++++++.+. +........+++|.|+.++.+++++++..+
T Consensus       173 d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A  252 (510)
T 3ul1_B          173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS  252 (510)
T ss_dssp             TCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             CCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999994322    2457899999999999987 666667778999999999999999999999


Q ss_pred             HHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchh
Q 015537          264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS  343 (405)
Q Consensus       264 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~  343 (405)
                      +|+|++|+.+..+..+.+.+.|+++.|+.+|.+++..++.+++++|+|++++++..+..+++.|+++.|+.++.++ ++.
T Consensus       253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~  331 (510)
T 3ul1_B          253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTN  331 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHH
T ss_pred             HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHH
Confidence            9999999999999889999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      ++++|+|+|+||+++++++++.+++.|++|.|+.+|.+.+     +.+|++|+|||+|+++
T Consensus       332 v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-----~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          332 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-----FKTQKEAAWAITNYTS  387 (510)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999998763     4699999999999875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.8e-39  Score=310.52  Aligned_cols=323  Identities=56%  Similarity=0.875  Sum_probs=299.0

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhc-CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      ++.+++.++++++.++..|+..|+++++.+.+++.+.+++. |++|.|+++|++++++.++..|+++|++++.++++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            79999999999999999999999999875446777888888 99999999999883389999999999999998888888


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      .+++.|++|.|+.+|.++++.+++.++|+|++++.+.+..++.+.+.|+++.|+.++..+.+..++..++|+|.+++.+.
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            89999999999999999999999999999999999998899999999999999999955678999999999999999886


Q ss_pred             -CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       234 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                       +........+++|.|+.++.++|+.++..++|+|++++...++....+.+.|+++.|+.+|.++++.++..|+++|+++
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             6666666689999999999999999999999999999998888888889999999999999999999999999999999


Q ss_pred             hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY  392 (405)
Q Consensus       313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr  392 (405)
                      +.+.+...+.+++.|+++.|+.++.++ ++.+++.|+|+|+|++.++++.++.+++.|++|.|+++|.+.     ++.+|
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~v~  335 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-----EFRTR  335 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-----CHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-----CHHHH
Confidence            999988888899999999999999998 999999999999999999999999999999999999999864     24799


Q ss_pred             HHHHHHHhhhc
Q 015537          393 KLAIWLCLVTC  403 (405)
Q Consensus       393 ~~A~~al~n~~  403 (405)
                      ++|+|+|+|+|
T Consensus       336 ~~a~~~L~~l~  346 (450)
T 2jdq_A          336 KEAAWAITNAT  346 (450)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999997

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=4.5e-40  Score=320.10  Aligned_cols=322  Identities=24%  Similarity=0.368  Sum_probs=289.9

Q ss_pred             cCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      +.+|.|+++|++ +++.+|..|+++|.++++++ .+..+.+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++.
T Consensus       100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B          100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            679999999985 55899999999999998875 677788999999999999999988 999999999999999998999


Q ss_pred             HHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537          152 TKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l  226 (405)
                      +..+++.|+++.|+.+|.+++     ..+...++|+++|++.+...........++++.|+.++ .+.+++++..++|+|
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL  256 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  256 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence            999999999999999998754     35788999999999987654555555567899999999 888999999999999


Q ss_pred             HHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHH
Q 015537          227 SNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (405)
Q Consensus       227 ~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  305 (405)
                      ++|+.+.+.. ......+++|.|+.++.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus       257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A  336 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  336 (510)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred             HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence            9999875322 223347899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcccc
Q 015537          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIVAFFFMFLH  384 (405)
Q Consensus       306 ~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~lL~~~~~  384 (405)
                      +|+|+|++.++..+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.+ 
T Consensus       337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d-  414 (510)
T 3ul1_B          337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-  414 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC-
T ss_pred             HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC-
Confidence            9999999999999999999999999999999999 99999999999999997 68899999999999999999997653 


Q ss_pred             cchhhhHHHHHHHHHhhhc
Q 015537          385 FFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       385 ~~~~~~vr~~A~~al~n~~  403 (405)
                          ++++..+.++|.|++
T Consensus       415 ----~~i~~~~L~aL~nil  429 (510)
T 3ul1_B          415 ----TKIIQVILDAISNIF  429 (510)
T ss_dssp             ----HHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHH
Confidence                469999999999976

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1e-39  Score=319.37  Aligned_cols=323  Identities=24%  Similarity=0.362  Sum_probs=290.7

Q ss_pred             hcCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537           72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        72 ~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      .+.+|.|+++|.+ +++.+|..|+++|.++++++ ......+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~  195 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA  195 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence            3679999999975 56899999999999998765 566778999999999999999998 99999999999999999899


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHH
Q 015537          151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (405)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~  225 (405)
                      .+..+++.|+++.|+.+|..++     ..+...++|+++|++.+...........++++.|+.++ .++++.++..++|+
T Consensus       196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a  274 (529)
T 3tpo_A          196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  274 (529)
T ss_dssp             HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence            9999999999999999998754     45788999999999987655555555567899999999 88899999999999


Q ss_pred             HHHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHH
Q 015537          226 LSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (405)
Q Consensus       226 l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  304 (405)
                      |++++.+.+.. ......+++|.|+.++.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus       275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~  354 (529)
T 3tpo_A          275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  354 (529)
T ss_dssp             HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence            99999875322 22334799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhccc
Q 015537          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIVAFFFMFL  383 (405)
Q Consensus       305 a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~lL~~~~  383 (405)
                      |+|+|+||+.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|++++|+++|.+.+
T Consensus       355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  433 (529)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999 99999999999999987 68899999999999999999997653


Q ss_pred             ccchhhhHHHHHHHHHhhhc
Q 015537          384 HFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       384 ~~~~~~~vr~~A~~al~n~~  403 (405)
                           +.++..+.++|.|++
T Consensus       434 -----~~i~~~~L~aL~nil  448 (529)
T 3tpo_A          434 -----TKIIQVILDAISNIF  448 (529)
T ss_dssp             -----HHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHH
Confidence                 469999999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=8.8e-40  Score=325.36  Aligned_cols=319  Identities=14%  Similarity=0.127  Sum_probs=275.8

Q ss_pred             HHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHH-hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch-
Q 015537           75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE-  150 (405)
Q Consensus        75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~-  150 (405)
                      ++.++++|.++  |++++..|++.|..+...  .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.++++ 
T Consensus       379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q  455 (810)
T 3now_A          379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ  455 (810)
T ss_dssp             HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence            67788899887  899999999999999532  33344455 6799999999999887 89999999999999986531 


Q ss_pred             ----------------------------hH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537          151 ----------------------------HT---KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (405)
Q Consensus       151 ----------------------------~~---~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~  199 (405)
                                                  .+   +.+++.|++|.|+.+|.++++.++++|+|+|+||+++ +.+|..+++
T Consensus       456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~  534 (810)
T 3now_A          456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQ  534 (810)
T ss_dssp             CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence                                        12   6889999999999999999999999999999999976 459999999


Q ss_pred             cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCCh--hhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCCh
Q 015537          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF--DQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTN  275 (405)
Q Consensus       200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~--~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~  275 (405)
                      .|++++|+.+| .+.+...++.++|+|.+|+.+. |...+  ....+++|.|+.+|.++. ...+.+++|+|.||+..++
T Consensus       535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d  613 (810)
T 3now_A          535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE  613 (810)
T ss_dssp             TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence            99999999999 6677889999999999999764 32211  123578999999998663 4455789999999999988


Q ss_pred             hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 015537          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (405)
Q Consensus       276 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl  355 (405)
                      +..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+++.+...+...|.++.|+.++.++ +..++++|+|+|+|+
T Consensus       614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanL  692 (810)
T 3now_A          614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAII  692 (810)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999999998776555443479999999999998 999999999999999


Q ss_pred             hcCCHHHHHHHHH-hCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          356 TAGNREQIQVIMH-VHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       356 ~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      +.+++.+++.+++ .|++|.|+++|.+.+     ..+|+.|+|+|+|+++
T Consensus       693 t~~s~~~~~~ii~~~g~I~~Lv~LL~s~d-----~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          693 TSVSVKCCEKILAIASWLDILHTLIANPS-----PAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHHCHHHHHHHHTSTTHHHHHHHHHTCSS-----HHHHHHHHHHHHHHHT
T ss_pred             hCCCHHHHHHHHHHcCCHHHHHHHHCCCC-----HHHHHHHHHHHHHHHh
Confidence            9988999999998 999999999998753     4699999999999864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=307.48  Aligned_cols=322  Identities=17%  Similarity=0.150  Sum_probs=255.6

Q ss_pred             hhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCch-HHHHhcCcHHHHHHHhcCCCC-----------HHHHHHHH
Q 015537           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDY-----------PQLQFEAA  138 (405)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~l~~Li~lL~~~~~-----------~~~~~~a~  138 (405)
                      +++.++.++.++.+.|+..      .++++++.+.++++ ..+++.|++|.|+++|...+.           ++++.+|+
T Consensus        30 ~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~  103 (458)
T 3nmz_A           30 KVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS  103 (458)
T ss_dssp             ---------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence            4567899999999888873      45555555545666 778999999999999997432           79999999


Q ss_pred             HHHHHHhcCCchhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChhhH
Q 015537          139 WALTNIASGTSEHTKVVIDHGAV----------PIFVKLLYSPS--DD-----VRE-------QAVWALGNIAGDSPRCR  194 (405)
Q Consensus       139 ~~L~ni~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----i~~-------~a~~~L~nl~~~~~~~~  194 (405)
                      |+|+||+.++++......+.|++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +++|
T Consensus       104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R  182 (458)
T 3nmz_A          104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR  182 (458)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence            99999999999999998888888          77778787642  22     555       999999999766 7799


Q ss_pred             HHHHhcCChHHHHHhhhC----------CCchhHHHHHHHHHHHhhcCCCCCChhh--hhccHHHHHhhhcCCChHHHHH
Q 015537          195 DLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVLTD  262 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~~~  262 (405)
                      +.+.+.|++++|+.+|..          ..++.+++.++|+|.|||.+++......  ..|++|.|+.+|.+++++++..
T Consensus       183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~  262 (458)
T 3nmz_A          183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV  262 (458)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHH
Confidence            999999999999999941          2357899999999999999864333222  3577999999999999999999


Q ss_pred             HHHHHHHhccC-ChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHHHHhHhhcCChhhHHHHH-hcCchHHHHHhhcCC
Q 015537          263 ACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGN  339 (405)
Q Consensus       263 a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~g~l~~L~~ll~~~  339 (405)
                      ++|+|.+|+.. +++....+.+.|+++.|+.+| .+.++.++..|+.+|+|++.+++.....+. ..|+++.|+.+|.++
T Consensus       263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~  342 (458)
T 3nmz_A          263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR  342 (458)
T ss_dssp             HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC
Confidence            99999999985 566778899999999999975 667889999999999999986655445555 789999999999987


Q ss_pred             Cch---hHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          340 YKK---SIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       340 ~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      .+.   .+++.|+|+|.||+.   +++++++.+++.|++|.|+.+|.+++     ..++++|+|+|+|+|.
T Consensus       343 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-----~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          343 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-----LTIVSNACGTLWNLSA  408 (458)
T ss_dssp             CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-----HHHHHHHHHHHHHHHS
T ss_pred             CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-----hHHHHHHHHHHHHHHc
Confidence            222   499999999999997   78999999999999999999998753     3599999999999984

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=299.85  Aligned_cols=325  Identities=17%  Similarity=0.148  Sum_probs=273.8

Q ss_pred             hhcCHHHHHHhhcCC------------ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcH----------HHHHHHhcCC
Q 015537           71 KLENLPVMVAGVWSN------------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV----------PRFVEFLLRE  128 (405)
Q Consensus        71 ~~~~l~~l~~~l~s~------------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l----------~~Li~lL~~~  128 (405)
                      +.+.+|.|+++|+..            +++.+++|+++|.++++++ ....+...+.|++          +.+++++.+.
T Consensus        68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            457899999999963            3699999999999999987 6666777777777          7778888765


Q ss_pred             C-CHH-----HHH-------HHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHH
Q 015537          129 D-YPQ-----LQF-------EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALG  184 (405)
Q Consensus       129 ~-~~~-----~~~-------~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~  184 (405)
                      . ..+     ++.       +|+|+|+|++.+ +++|+.+++.|++++|+.+|..           .++.+++.|+|+|.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~  225 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT  225 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence            2 112     333       999999999777 9999999999999999999942           34779999999999


Q ss_pred             HhhCCChhhHHHHHh-cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-C-CCChhhhhccHHHHHhhh-cCCChHHH
Q 015537          185 NIAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P-QPPFDQVSPALPALAHLI-HSNDDEVL  260 (405)
Q Consensus       185 nl~~~~~~~~~~i~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~~~~l~~L~~ll-~~~d~~v~  260 (405)
                      ||+.+++..+..+.. .|++++|+.+| .+++++++..++|+|.||+.+. + ........|++|.|+.+| .+.++.++
T Consensus       226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence            999888777777754 55699999999 7889999999999999999852 2 222333479999999975 56789999


Q ss_pred             HHHHHHHHHhccCChhHHHHHH-hcCChHHHHHhcCCCCc----chHHHHHHHHhHhhc---CChhhHHHHHhcCchHHH
Q 015537          261 TDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCL  332 (405)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~~~~~g~l~~L  332 (405)
                      ..++.+|.+|+.++++....+. ..|+++.|+.+|.+.++    .++..|+++|.|++.   +++...+.+++.|+++.|
T Consensus       305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L  384 (458)
T 3nmz_A          305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL  384 (458)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence            9999999999985555444555 78999999999987765    389999999999997   788889999999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       333 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      +.+|.++ +..++++|+|+|+|++.+++++++.+++.|++|.|+++|.+.+     +.+++.|+|||.|++.
T Consensus       385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-----~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-----KMIAMGSAAALRNLMA  450 (458)
T ss_dssp             HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-----HHHHHHHHHHHHHHHT
T ss_pred             HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-----HHHHHHHHHHHHHHHc
Confidence            9999998 8999999999999999889999999999999999999997652     3699999999999874

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=8.5e-38  Score=299.67  Aligned_cols=320  Identities=18%  Similarity=0.173  Sum_probs=268.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+|.++.+|.++++.+|..|+++|++++..+ .+....+++.|++|.|+++|++++ +.++..|+|+|+|++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            5799999999999999999999999997542 344558999999999999999888 99999999999999998899999


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh--------CC-------Cchh
Q 015537          154 VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQ-------PKLS  217 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~--------~~-------~~~~  217 (405)
                      .+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.++.        ..       .++.
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 88999999999999999988 668888888 99999999993        11       3577


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhh-h-ccHHHHHhhhcC-----------------------------------------
Q 015537          218 MLRNATWTLSNFCRGKPQPPFDQV-S-PALPALAHLIHS-----------------------------------------  254 (405)
Q Consensus       218 ~~~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~L~~ll~~-----------------------------------------  254 (405)
                      +++.++|+|+|||.+ +....... . |++|.|+.++++                                         
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            888999999999986 32211222 2 666666655532                                         


Q ss_pred             ----------------------------------------------------------CChHHHHHHHHHHHHhccCChh
Q 015537          255 ----------------------------------------------------------NDDEVLTDACWALSYLSDGTND  276 (405)
Q Consensus       255 ----------------------------------------------------------~d~~v~~~a~~~l~~l~~~~~~  276 (405)
                                                                                .++.+++.++|+|++++.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                                                      2356777889999999976543


Q ss_pred             H---H-HHHH-hcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-----chhHHH
Q 015537          277 K---I-QAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-----KKSIKK  346 (405)
Q Consensus       277 ~---~-~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-----~~~v~~  346 (405)
                      .   . +.++ +.|++|.|+.+|.+++.+++..|+++|+|++.+.  ....++..|+++.|+.+|.++.     +..+..
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence            2   2 3344 5799999999999999999999999999998743  4455677789999999999872     136888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          347 EACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      .++|+|+|+..+++++.+.+.+.|+++.|++++.+..+.    .++++|+|.|.|+++
T Consensus       396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~----~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP----KAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH----HHHHHHHHHHHHHHc
Confidence            999999999998889899999999999999999877233    699999999999986

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=5.2e-37  Score=294.66  Aligned_cols=321  Identities=25%  Similarity=0.334  Sum_probs=285.9

Q ss_pred             cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      +.++.+++.|+++ ++.++..|+++|.++++.. .+....+++.|++|.|+++|++++ +.++..|+|+|++++..+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            4589999999998 8999999999999998654 455667888999999999999987 999999999999999998889


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      +..+++.|+++.|+.++.+ +++.++..++|+|++++.+. +..+..+ ..++++.|+.++ .+.++.++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999996 78999999999999999765 4332332 378999999999 778899999999999999


Q ss_pred             hcCCCC-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHH
Q 015537          230 CRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (405)
Q Consensus       230 ~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  308 (405)
                      +...+. .......+++|.|+.++.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            987522 2222336899999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       309 l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      |+|++.+++...+.+++.|+++.|+.++.++ ++.+|+.|+|+|+|++.+ ++++++.+++.|++|.|+++|...     
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-----  373 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-----  373 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-----
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-----
Confidence            9999999988888899999999999999998 999999999999999974 788899999999999999999765     


Q ss_pred             hhhHHHHHHHHHhhhc
Q 015537          388 GAIIYKLAIWLCLVTC  403 (405)
Q Consensus       388 ~~~vr~~A~~al~n~~  403 (405)
                      ++.+|+.|.|+|.|++
T Consensus       374 ~~~v~~~a~~aL~~l~  389 (450)
T 2jdq_A          374 DSKIVQVALNGLENIL  389 (450)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            2479999999999986

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.2e-36  Score=298.19  Aligned_cols=321  Identities=24%  Similarity=0.330  Sum_probs=289.2

Q ss_pred             cCHHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      +.+|.|+++|.+++ +.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|+|++.+++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            57999999999887 999999999999998754 556677889999999999999987 999999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537          152 TKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  230 (405)
                      +..+.+.|+++.|+.+| .++++.++..++|+|++++...+.. ......|+++.|+.++ .+.++.++..++|+|.+++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 5679999999999999999876433 3344578999999999 7889999999999999999


Q ss_pred             cCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC-CcchHHHHHHH
Q 015537          231 RGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRT  308 (405)
Q Consensus       231 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~  308 (405)
                      .+.+.. ......+++|.|+.++.++++.++..++++|++++.+++...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            875322 2233368999999999999999999999999999998888888999999999999999988 89999999999


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       309 l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      |+|++.+++.....+++.|+++.|+.++.++ ++.++++|+|+|+|++.+ +++....+++.|+++.|+.+|...+    
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d----  427 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD----  427 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC----
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCC----
Confidence            9999998888888999999999999999999 999999999999999985 8999999999999999999997742    


Q ss_pred             hhhHHHHHHHHHhhhc
Q 015537          388 GAIIYKLAIWLCLVTC  403 (405)
Q Consensus       388 ~~~vr~~A~~al~n~~  403 (405)
                       +.++..|.++|.|+|
T Consensus       428 -~~v~~~al~~L~~l~  442 (528)
T 4b8j_A          428 -IRIVTVCLEGLENIL  442 (528)
T ss_dssp             -HHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHH
Confidence             479999999999986

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.5e-36  Score=295.91  Aligned_cols=322  Identities=23%  Similarity=0.322  Sum_probs=287.6

Q ss_pred             cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      +.+|.|+++|.++ ++.++..|+++|.++++.. ......+++.|+++.|+.+|.+++ +.++..|+|+|++++..+++.
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            6799999999997 8999999999999998654 455667888999999999999887 999999999999999988899


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      +..++..|+++.|+.++.++++.++..++|+|++|+.+...........++++.|+.++ .+.++.++..++|+|.+|+.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999977522334555678999999999 77889999999999999998


Q ss_pred             CCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537          232 GKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (405)
Q Consensus       232 ~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~  310 (405)
                      +.+... .....+++|.|+.++.+.++.++..++++|++++.+++...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            753222 2222589999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CH--HHHHHHHHhCcHHHHHHHHhcccccch
Q 015537          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR--EQIQVIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       311 nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      |++.+++...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.+ ++  ++.+.+++.|++|.|+.+|...     
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~-----  440 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-----  440 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-----
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-----
Confidence            99998888888899999999999999988 999999999999999974 55  7889999999999999999765     


Q ss_pred             hhhHHHHHHHHHhhhc
Q 015537          388 GAIIYKLAIWLCLVTC  403 (405)
Q Consensus       388 ~~~vr~~A~~al~n~~  403 (405)
                      ++.++..|.|+|.|++
T Consensus       441 ~~~v~~~al~aL~~l~  456 (530)
T 1wa5_B          441 DNRIIEVTLDALENIL  456 (530)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            2479999999999986

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=5.2e-36  Score=289.12  Aligned_cols=323  Identities=17%  Similarity=0.171  Sum_probs=264.7

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-Cchh
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~-~~~~  151 (405)
                      ..++.++++|.++++.+|..|+++|++++..+ .+....+++.|+||.|+++|.+++ +.++..|+|+|+||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            47899999999999999999999999997654 677788999999999999999988 99999999999999996 6899


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh-----------------CC
Q 015537          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-----------------GQ  213 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~-----------------~~  213 (405)
                      +..+++.|+||.|+.+|.+ .+..++++++++|+||+.. +..+..+.+ +++++|+.++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 6889999999999999985 457777775 57999999762                 12


Q ss_pred             CchhHHHHHHHHHHHhhcCCCC-CChhh----------------------------------------------------
Q 015537          214 PKLSMLRNATWTLSNFCRGKPQ-PPFDQ----------------------------------------------------  240 (405)
Q Consensus       214 ~~~~~~~~a~~~l~~l~~~~~~-~~~~~----------------------------------------------------  240 (405)
                      .++.++++++|+|.||+...+. .....                                                    
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            3567788888888888765311 00000                                                    


Q ss_pred             ----------------------hhccHHHHHhhhc-CCChHHHHHHHHHHHHhccCCh---hHHH-HHHhcCChHHHHHh
Q 015537          241 ----------------------VSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTN---DKIQ-AVIEAGVFPRLAEF  293 (405)
Q Consensus       241 ----------------------~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~---~~~~-~~~~~~~l~~L~~l  293 (405)
                                            ..++++.++.++. +.++.++++|+|+|.+|+.+..   ...+ .+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                                  0123455666664 4568889999999999987652   1223 34456889999999


Q ss_pred             cCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-------chhHHHHHHHHHHHHhcCCHHHHHHH
Q 015537          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-------KKSIKKEACWTVSNITAGNREQIQVI  366 (405)
Q Consensus       294 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (405)
                      |.+++..++..|+++|+|++.+...  +.++..|+++.|+.+|.++.       ...+...|||+|+||+.+++++.+.+
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I  441 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL  441 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            9999999999999999999986653  34568899999999999872       24688999999999999999999999


Q ss_pred             HHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          367 MHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       367 ~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      ++.|++|.|+.+|.+...   .+.+++.|+|+|+|++.
T Consensus       442 ~~~g~I~~Lv~LL~s~~~---~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          442 RETQGIEKLVLINKSGNR---SEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             HHTTHHHHHHHHHTCSSS---CHHHHHHHHHHHHHHHT
T ss_pred             HHCCChHHHHHHHhCCCC---ChHHHHHHHHHHHHHHc
Confidence            999999999999987521   34899999999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.6e-36  Score=301.94  Aligned_cols=324  Identities=12%  Similarity=0.071  Sum_probs=274.9

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCC----------------------------c---hHHHHhcCcHHHH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSP----------------------------P---IEEVIRSGVVPRF  121 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~----------------------------~---~~~~~~~g~l~~L  121 (405)
                      +.+|.|+++++++++.++..|+++|.++..+.+..                            .   ++.+++.|++|.|
T Consensus       421 g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~L  500 (810)
T 3now_A          421 ASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTAL  500 (810)
T ss_dssp             HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             chHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHH
Confidence            56999999999999999999999999998754111                            0   2678899999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhH-HHHHh
Q 015537          122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCR-DLVLS  199 (405)
Q Consensus       122 i~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~-~~i~~  199 (405)
                      +.+|++++ +.++.+|+|+|+||+.+ ++++..+++.|++|+|+.+|.++++..++.|+|+|+|++.+. +... .....
T Consensus       501 V~LL~s~s-~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~  578 (810)
T 3now_A          501 CALAKTES-HNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS  578 (810)
T ss_dssp             HHHHTCCC-HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred             HHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence            99999988 99999999999999965 789999999999999999999999999999999999998643 3210 00012


Q ss_pred             cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHH
Q 015537          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI  278 (405)
Q Consensus       200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~  278 (405)
                      .|++++|+.+|..+.+...+..++|+|.||+...+. .......+++|.|+.++.++++.++..|+++|++++.+++.. 
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~-  657 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-  657 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-
Confidence            468999999994333555567899999999998532 222333789999999999999999999999999999866544 


Q ss_pred             HHHHh-cCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          279 QAVIE-AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       279 ~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      ..+++ .|.++.|+.++.+++..++..|+|+|+|++.+++.+.+.+++ .|+++.|+.++.++ +..+++.|+|+|+|++
T Consensus       658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~  736 (810)
T 3now_A          658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMI  736 (810)
T ss_dssp             HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            44555 699999999999999999999999999999988888888998 89999999999999 9999999999999999


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          357 AGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      .+++++...+.+.|++++|+++|...+..  .+++.+.|.-+|.|.
T Consensus       737 ~~s~e~~~~l~e~G~i~~L~~LL~~~d~~--~~~i~e~Al~aL~~l  780 (810)
T 3now_A          737 NAGEEIAKKLFETDIMELLSGLGQLPDDT--RAKAREVATQCLAAA  780 (810)
T ss_dssp             TTCHHHHHHHHTSTHHHHHTTSCCCTTST--THHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHCCCHHHHHHHHhCcccC--cHHHHHHHHHHHHHH
Confidence            98899999999999999999999764222  347888888888764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=6.3e-35  Score=268.05  Aligned_cols=275  Identities=18%  Similarity=0.162  Sum_probs=239.2

Q ss_pred             hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 015537           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----------DYPQLQFEAAWALTNIASGTSEHTKVVI  156 (405)
Q Consensus        87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~----------~~~~~~~~a~~~L~ni~~~~~~~~~~~~  156 (405)
                      ...+..|+++|.++. .+ .+..+.+++.|+++.|+.+|..+          .++.++..|+|+|.|++.+++..+..+.
T Consensus        46 ~~~~~~A~~aL~nls-~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLS-FD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHH-TS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHc-CC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            355568999999995 44 57788899999999999999521          1267999999999999998777887775


Q ss_pred             hC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-
Q 015537          157 DH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-  233 (405)
Q Consensus       157 ~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-  233 (405)
                      .. |+||.|+.+|.++++++++.++|+|+||+.. ++..+..+.+.|++++|+.+|..+.+..+++.++++|+||+... 
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            54 6699999999999999999999999999985 67789999999999999998757778999999999999999854 


Q ss_pred             CCCChhh-hhccHHHHHhhhcCCCh----HHHHHHHHHHHHhcc---CChhHHHHHHhcCChHHHHHhcCCCCcchHHHH
Q 015537          234 PQPPFDQ-VSPALPALAHLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (405)
Q Consensus       234 ~~~~~~~-~~~~l~~L~~ll~~~d~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  305 (405)
                      ....... ..|++|.|+.+|.+.++    +++..++|+|.+++.   .+++..+.+.+.|+++.|+.+|.+++..++..|
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A  283 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA  283 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence            2222222 57999999999987654    599999999999997   677888889999999999999999999999999


Q ss_pred             HHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015537          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (405)
Q Consensus       306 ~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (405)
                      +++|+|++.+++++.+.+++.|+++.|+.++.++ ++.+++.|+|+|.||+.++++..+
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence            9999999988899999999999999999999998 999999999999999998776443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.8e-33  Score=275.72  Aligned_cols=317  Identities=17%  Similarity=0.193  Sum_probs=270.5

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +.+|.+++.++++++.++..|+++|.+++..+ ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            67999999999999999999999999998764 455667789999999999999987 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      ..+.+.|+++.|+.+|+++ ....+..+..+|.|++.. +..+..+.+.|+++.|+.++ .+.++.+++.++|+|.+|+.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            9999999999999999875 456788899999999964 45788889999999999999 66789999999999999999


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC--CCcchHHHHHHHH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV  309 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l  309 (405)
                      ..+..  ....+++|.|+.++.+++++++..++|+|++++.++++....+.+.|+++.|+.+|.+  .++.++..|+++|
T Consensus       257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            86432  2346899999999999999999999999999999888888999999999999999965  3478999999999


Q ss_pred             hHhhcCChh---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccc
Q 015537          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFF  386 (405)
Q Consensus       310 ~nl~~~~~~---~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  386 (405)
                      +|++.+++.   ....+.+.|+++.|+.++.++.++.++++++|+|+|++.+... ...+++.|++|.|+++|.+.    
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~----  409 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRA----  409 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHH----
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHH----
Confidence            999876543   3567889999999999999983469999999999999986555 47888999999999999864    


Q ss_pred             hhhhHHHHHHHHHhh
Q 015537          387 FGAIIYKLAIWLCLV  401 (405)
Q Consensus       387 ~~~~vr~~A~~al~n  401 (405)
                       ++.+|++|+|+++|
T Consensus       410 -~~~v~~~a~~~l~n  423 (529)
T 1jdh_A          410 -HQDTQRRTSMGGTQ  423 (529)
T ss_dssp             -HHHHC---------
T ss_pred             -hHHHHHHHhcccCc
Confidence             35799999999998

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=5.6e-34  Score=261.73  Aligned_cols=266  Identities=18%  Similarity=0.153  Sum_probs=230.4

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~  199 (405)
                      ...+..|+|+|+|++.+ +++|+.+++.|+++.|+.+|.+           .++.++..|+|+|.||+.+++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35566899999999998 8999999999999999999952           24789999999999999888777777754


Q ss_pred             -cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-C-CCChhhhhccHHHHHhhh-cCCChHHHHHHHHHHHHhccCCh
Q 015537          200 -QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P-QPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTN  275 (405)
Q Consensus       200 -~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~  275 (405)
                       .|++++|+.+| .+++++++..++|+|.||+.+. + ........|++|.|+.+| .+.+++++..++++|.+|+..++
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             45699999999 7889999999999999999862 2 222333479999999974 66789999999999999998665


Q ss_pred             hHHHHHH-hcCChHHHHHhcCCCCc----chHHHHHHHHhHhhc---CChhhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537          276 DKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (405)
Q Consensus       276 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~  347 (405)
                      +....+. ..|+++.|+.+|.++++    .++..|+++|.|++.   ++++.++.+++.|+++.|+.+|.++ +..++++
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            5555565 78999999999987665    489999999999997   7888889999999999999999998 9999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          348 ACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      |+|+|+|++.+++++++.+++.|++|.|+++|.+..     +.+|++|+|+|.|++.
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-----~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-----KMIAMGSAAALRNLMA  334 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-----HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-----HHHHHHHHHHHHHHHc
Confidence            999999999889999999999999999999997753     3699999999999975

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.1e-33  Score=271.15  Aligned_cols=279  Identities=19%  Similarity=0.201  Sum_probs=237.9

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (405)
                      .+|.|+.+|++++ +.++..|+++|.+++.+++..+..+++.|++|.|+.+|+++++.++..|+|+|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4899999999998 899999999999999987888889999999999999999999999999999999999988889999


Q ss_pred             HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc--------C--------CChHHH
Q 015537          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--------S--------NDDEVL  260 (405)
Q Consensus       197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~d~~v~  260 (405)
                      +.+.|++++|+.+|..+.++++++.++|+|+||+.++ ........|++|.|+.++.        +        .++.+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            9999999999999954889999999999999999983 3333333499999999993        2        356778


Q ss_pred             HHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCC------CCcchHHHHHHHHhHhhcC------------------
Q 015537          261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG------------------  315 (405)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~------------------  315 (405)
                      ..++|+|.+|+.. ++..+.+.+. |+++.|+.+|.+      .+..+...++.+|.|++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 7778888887 999999999975      4567888899999988631                  


Q ss_pred             --------------------------------ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 015537          316 --------------------------------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--  361 (405)
Q Consensus       316 --------------------------------~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~--  361 (405)
                                                      .+...+.+++.|+++.|+.+|.++.++.+++.|+|+|+||++++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1123445667788999999998876789999999999999986532  


Q ss_pred             -HH-HHHH-HhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          362 -QI-QVIM-HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       362 -~~-~~l~-~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                       ++ +.++ +.|++|.|+++|.+++     ..++++|+|+|+|++
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~-----~~v~~~A~~aL~nls  359 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGN-----SDVVRSGASLLSNMS  359 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSC-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCC-----HhHHHHHHHHHHHHh
Confidence             23 4455 6899999999998763     369999999999986

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.6e-33  Score=276.45  Aligned_cols=317  Identities=17%  Similarity=0.194  Sum_probs=271.6

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +.++.|+++|+++++.++..|+++|.++++.. ......+.+.|+++.|+++|++++ +.++..++.+|.+++.++++.+
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            56899999999999999999999999998765 566677889999999999999987 8888889999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      ..+.+.|+++.|+.+|.+. ...+++.++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999975 467889999999999964 55788999999999999999 67789999999999999998


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV  309 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l  309 (405)
                      ..+.  .....+++|.|+.++.+++++++..++|+|++|+.++++..+.+++.|+++.|+.+|.+.  .+.++..|+++|
T Consensus       254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            7533  234468999999999999999999999999999998888888899999999999999763  368999999999


Q ss_pred             hHhhcCCh--hh-HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccc
Q 015537          310 GNIVTGDD--MQ-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFF  386 (405)
Q Consensus       310 ~nl~~~~~--~~-~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  386 (405)
                      +|++....  .. ...+++.|+++.|+.+|.++.++.++++|+|+|+|++.+...+ +.+++.|++|.|+++|...    
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~----  406 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRA----  406 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHH----
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhcc----
Confidence            99997543  23 3347889999999999998844799999999999998875554 8888999999999999865    


Q ss_pred             hhhhHHHHHHHHHhh
Q 015537          387 FGAIIYKLAIWLCLV  401 (405)
Q Consensus       387 ~~~~vr~~A~~al~n  401 (405)
                       ++.+|++|+|+++|
T Consensus       407 -~~~vr~~a~~al~n  420 (644)
T 2z6h_A          407 -HQDTQRRTSMGGTQ  420 (644)
T ss_dssp             -HHHHTTC-------
T ss_pred             -chhhhhHhhhcccc
Confidence             23578888887776

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.3e-32  Score=263.72  Aligned_cols=286  Identities=18%  Similarity=0.165  Sum_probs=238.5

Q ss_pred             HHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-C
Q 015537          112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-S  190 (405)
Q Consensus       112 ~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~-~  190 (405)
                      -...+.+|.|+++|.+++ +.++..|+++|.+++.++++++..+++.|+||.|+.+|.++++.+++.|+|+|.||+.+ +
T Consensus        44 ~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~  122 (584)
T 3l6x_A           44 NWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD  122 (584)
T ss_dssp             CCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred             CcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence            345678999999999988 99999999999999998899999999999999999999999999999999999999985 6


Q ss_pred             hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh------------------
Q 015537          191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI------------------  252 (405)
Q Consensus       191 ~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll------------------  252 (405)
                      +.++..+.+.|++++|+.+|....+.++++.++++|++|+..+ ........+++|.|+.++                  
T Consensus       123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~  201 (584)
T 3l6x_A          123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR  201 (584)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence            8899999999999999999965678899999999999999863 344444467899999976                  


Q ss_pred             cCCChHHHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCC------CCcchHHHHHHHHhHhhcCChh-------
Q 015537          253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDDM-------  318 (405)
Q Consensus       253 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~-------  318 (405)
                      ...|+.++..++++|.+|+..+++..+.+++. |+++.|+.+|.+      .+......|+++|.|++...+.       
T Consensus       202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~  281 (584)
T 3l6x_A          202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER  281 (584)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred             ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence            12368999999999999998887767778876 667899999864      4567889999999999965221       


Q ss_pred             ------------------hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC---HHHHHHHH-HhCcHHHHH
Q 015537          319 ------------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN---REQIQVIM-HVHAFSIIV  376 (405)
Q Consensus       319 ------------------~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~---~~~~~~l~-~~~~i~~L~  376 (405)
                                        ..+.+++.++++.|+.+|.++.++.+++.|+|+|+||+++.   +..++..+ +.|++|.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence                              11223344567888999975448999999999999999875   22334444 689999999


Q ss_pred             HHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          377 AFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       377 ~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      ++|.+...     .+++.|+|||+|++.
T Consensus       362 ~LL~s~~~-----~v~~~A~~aL~nLs~  384 (584)
T 3l6x_A          362 DLLTNEHE-----RVVKAASGALRNLAV  384 (584)
T ss_dssp             HGGGCSCH-----HHHHHHHHHHHHHHT
T ss_pred             HHHcCCCH-----HHHHHHHHHHHHHhC
Confidence            99987643     599999999999874

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=7.6e-32  Score=264.12  Aligned_cols=322  Identities=15%  Similarity=0.165  Sum_probs=279.0

Q ss_pred             cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      +.++.+++.|.++ ++.++..|+..|+++...  .++...+.+.|++|.|+++|++++ +.++..|+++|++++.+++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            4689999999754 899999999999998543  346778889999999999999988 999999999999999987788


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      +..+.+.|++|.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++....+......++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88898999999999999999999999999999999998888999999999999999999766677888899999999997


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      ...........++++.|+.++.++++.++..++|+|.+++...+...   ...|+++.|+.+|.+.++.++..++++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            64333333337899999999999999999999999999997654321   123789999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcccccch
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      ++.+++.....+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++   ....+.+.|++|.|+++|.+..+   
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~---  369 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH---  369 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC---
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccc---
Confidence            9998888888999999999999999863 1479999999999999876433   35677899999999999987643   


Q ss_pred             hhhHHHHHHHHHhhhcc
Q 015537          388 GAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       388 ~~~vr~~A~~al~n~~~  404 (405)
                       +.++++|+|+|+|++.
T Consensus       370 -~~v~~~a~~~l~nl~~  385 (529)
T 1jdh_A          370 -WPLIKATVGLIRNLAL  385 (529)
T ss_dssp             -HHHHHHHHHHHHHHTT
T ss_pred             -hHHHHHHHHHHHHHhc
Confidence             3799999999999873

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=7.6e-31  Score=266.89  Aligned_cols=317  Identities=17%  Similarity=0.195  Sum_probs=269.6

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            56899999999999999999999999998764 455666778999999999999877 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          153 KVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      ..+.+.|+++.|+.+|++.+ ...++.++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999999864 45677899999999975 44778888999999999999 67788999999999999998


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC-CC-cchHHHHHHHH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-PSVLIPALRTV  309 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-~~v~~~a~~~l  309 (405)
                      ..+.  .....++++.|+.++.+.++.++..++|+|++|+.++++....+++.|+++.|+.+|.+ .+ ..++..|+++|
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            8633  22346899999999999999999999999999999888888899999999999999975 33 38999999999


Q ss_pred             hHhhcCChh---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccc
Q 015537          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFF  386 (405)
Q Consensus       310 ~nl~~~~~~---~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  386 (405)
                      +||+..+..   ....+.+.|+++.|+.+|.++.++.++++|+|+|+||+.+... ...+++.|++|.|+++|.+..   
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~~---  543 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAH---  543 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHHHTTHHHHHHHHHHHHH---
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHHHCCCHHHHHHHHHhcc---
Confidence            999875543   2346788999999999999983459999999999999986554 478889999999999997642   


Q ss_pred             hhhhHHHHHHHHHhh
Q 015537          387 FGAIIYKLAIWLCLV  401 (405)
Q Consensus       387 ~~~~vr~~A~~al~n  401 (405)
                        +++|++|+|+++|
T Consensus       544 --~~~~~~aa~al~n  556 (780)
T 2z6g_A          544 --QDTQRRTSMGGTQ  556 (780)
T ss_dssp             --HHHHHTTC-----
T ss_pred             --hhHHHHHhhcccc
Confidence              3466666666665

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.98  E-value=1.6e-30  Score=229.60  Aligned_cols=240  Identities=28%  Similarity=0.425  Sum_probs=223.3

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (405)
                      |.++.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..++++|++++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            67999999999988 99999999999999999888999999999999999999999999999999999999999888999


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCC-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (405)
                      .+.+.|+++.++.++ .++++.++..++|+|.+++...+. .......++++.|+.++.++++.++..++++|++++..+
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 778999999999999999976432 222333689999999999999999999999999999988


Q ss_pred             hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                      +...+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999998888899999999999999999998 99999999999999


Q ss_pred             HhcC
Q 015537          355 ITAG  358 (405)
Q Consensus       355 l~~~  358 (405)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.98  E-value=1.3e-30  Score=260.95  Aligned_cols=321  Identities=16%  Similarity=0.166  Sum_probs=276.6

Q ss_pred             cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      +.++.+++.|.++ ++.++..|+.+|+++...  ......+.+.|+++.|+++|++++ +.++..|+++|.|++...+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            3589999999875 899999999999988543  346777889999999999999988 999999999999999987788


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      +..+.+.|+++.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88899999999999999999999999999999999988888899999999999999999666677889999999999997


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6433333334789999999999999999999999999998765332   1123678999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCCH--HHHH-HHHHhCcHHHHHHHHhcccccch
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNR--EQIQ-VIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      ++.+++.....+.+.|+++.|+.++.+..+ +.++..|+++|+||+..++  +..+ .+++.|++|.|+++|.+..+   
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~---  366 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH---  366 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC---
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc---
Confidence            999888888889999999999999987423 7999999999999987433  2333 47789999999999987643   


Q ss_pred             hhhHHHHHHHHHhhhc
Q 015537          388 GAIIYKLAIWLCLVTC  403 (405)
Q Consensus       388 ~~~vr~~A~~al~n~~  403 (405)
                       +.++++|+|+|+|++
T Consensus       367 -~~v~~~a~~~L~nLa  381 (644)
T 2z6h_A          367 -WPLIKATVGLIRNLA  381 (644)
T ss_dssp             -HHHHHHHHHHHHHHT
T ss_pred             -hHHHHHHHHHHHHHc
Confidence             379999999999986

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=1.5e-30  Score=230.08  Aligned_cols=239  Identities=36%  Similarity=0.551  Sum_probs=220.9

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (405)
                      ...+.++..|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|.++++.++..++++|++++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45899999999998 89999999999887776678888999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (405)
                      .+.+.|+++.|+.++ .++++.++..++|+|.+++.+.+.. ......+++|.|+.++.++++.++..++|+|++++..+
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6689999999999999999886433 33444789999999999999999999999999999988


Q ss_pred             hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                      ++....+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999998988899999999999999999998 99999999999999


Q ss_pred             Hhc
Q 015537          355 ITA  357 (405)
Q Consensus       355 l~~  357 (405)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=3.1e-30  Score=262.47  Aligned_cols=322  Identities=15%  Similarity=0.168  Sum_probs=275.9

Q ss_pred             cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      +.++.|++.|.++ ++.++..|+.+|+++.. . ..+...+.+.|+++.|+++|++++ +.++..|+++|.|++...++.
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~-~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSH-H-REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            3588999999864 89999999999999754 3 345677888999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++...........++.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88999999999999999999999999999999999988888999999999999999999655566777889999999997


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      ...........++++.|+.++.+.++.++..++|+|.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            5433233334789999999999999999999999999999765432   1123678999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcccccch
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      ++.+++.....+++.|+++.|+.+|.+..+ ..++..|+|+|+||+..+++   ....+.+.|++|.|+++|.+...   
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~---  502 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH---  502 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC---
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCCh---
Confidence            999988888899999999999999987423 48999999999999875443   23467789999999999987643   


Q ss_pred             hhhHHHHHHHHHhhhcc
Q 015537          388 GAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       388 ~~~vr~~A~~al~n~~~  404 (405)
                       +.++++|+|+|+|++.
T Consensus       503 -~~v~~~A~~aL~nLa~  518 (780)
T 2z6g_A          503 -WPLIKATVGLIRNLAL  518 (780)
T ss_dssp             -HHHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHHHHHhc
Confidence             3799999999999873

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=6.6e-30  Score=225.72  Aligned_cols=239  Identities=23%  Similarity=0.329  Sum_probs=220.0

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCC
Q 015537          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPP  237 (405)
Q Consensus       159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~  237 (405)
                      |.++.|+.+|.+++++++..++++|++++.+.+..+..+.+.|+++.|+.++ .+++..++..++|+|.+++...+ ...
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            6789999999999999999999999999999888889999999999999999 77889999999999999998753 233


Q ss_pred             hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (405)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  317 (405)
                      .....++++.|+.++.+++++++..++|+|++++..+++....+.+.|+++.|+.+|.++++.++..++++|+|++.+++
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            33347899999999999999999999999999998888888889999999999999999999999999999999999888


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHH
Q 015537          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIW  397 (405)
Q Consensus       318 ~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~  397 (405)
                      .....+++.|+++.|+.++.++ ++.++..|+|+|+|++.++++..+.+.+.|+++.|++++.+.     ++.+|+.|+|
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~  234 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-----DSEVQKEAQR  234 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-----CHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-----cHHHHHHHHH
Confidence            8888899999999999999998 999999999999999999999999999999999999999764     2479999999


Q ss_pred             HHhhhcc
Q 015537          398 LCLVTCC  404 (405)
Q Consensus       398 al~n~~~  404 (405)
                      +|+|++.
T Consensus       235 ~L~~l~~  241 (252)
T 4hxt_A          235 ALENIKS  241 (252)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999874

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=1.1e-29  Score=224.57  Aligned_cols=239  Identities=35%  Similarity=0.567  Sum_probs=218.5

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      ..++.++..|++++++++..|++.|+++++.. .+..+.+++.|+++.|+++|++++ +.++..|+++|++++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            45799999999999999999999999988864 677888999999999999999988 9999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      ..+++.|+++.|+.+|.++++.+++.++|+|+|++.+.+.....+.+.|+++.|+.++ .+++..++..++|+|.+++.+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988875548888999999999999 778999999999999999987


Q ss_pred             CCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          233 KPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       233 ~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      .+... .....+++|.|+.++.++++.++..++++|++++..+++....+++.|+++.|+.++.++++.++..|+++|+|
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            53222 22337999999999999999999999999999998888888899999999999999999999999999999999


Q ss_pred             hhc
Q 015537          312 IVT  314 (405)
Q Consensus       312 l~~  314 (405)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=3e-25  Score=190.43  Aligned_cols=201  Identities=37%  Similarity=0.550  Sum_probs=174.7

Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 015537          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (405)
Q Consensus       113 ~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~  192 (405)
                      ...|+.+.|+.+|++++ +.++..|+|+|++++.++++.+..+++.|+++.|+.+|.++++.++..++|+|+|++.+++.
T Consensus         9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            34678999999999988 99999999999999988899999999999999999999999999999999999999988887


Q ss_pred             hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (405)
Q Consensus       193 ~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (405)
                      .+..+.+.|+++.|+.+| .                                         ++++.++..++|+|++++.
T Consensus        88 ~~~~i~~~g~i~~L~~lL-~-----------------------------------------~~~~~v~~~a~~~L~~l~~  125 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLL-S-----------------------------------------SPNEQILQEALWALSNIAS  125 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHT-T-----------------------------------------CSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHH-c-----------------------------------------CCcHHHHHHHHHHHHHHHc
Confidence            878777777777777766 3                                         3455566666666666666


Q ss_pred             CChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 015537          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (405)
Q Consensus       273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  352 (405)
                      ++++....+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|
T Consensus       126 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL  204 (210)
T 4db6_A          126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEAL  204 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            6666667788899999999999999999999999999999998888888899999999999999998 999999999999


Q ss_pred             HHHhc
Q 015537          353 SNITA  357 (405)
Q Consensus       353 ~nl~~  357 (405)
                      .+++.
T Consensus       205 ~~l~~  209 (210)
T 4db6_A          205 EKLQS  209 (210)
T ss_dssp             HHHCC
T ss_pred             HHHhc
Confidence            99974

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=2.6e-25  Score=190.80  Aligned_cols=199  Identities=34%  Similarity=0.460  Sum_probs=178.6

Q ss_pred             hcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH
Q 015537          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK  277 (405)
Q Consensus       199 ~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~  277 (405)
                      ..+..++|..++ +++++.++..++|+|.+++.+.+.. ......+++|.|+.+|.++++.++..++|+|++++.++++.
T Consensus        10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            456788888888 8889999999999999999775322 23334799999999999999999999999999999888888


Q ss_pred             HHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       278 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      ...+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            88999999999999999999999999999999999998888888899999999999999998 99999999999999999


Q ss_pred             CCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          358 GNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      ++++....+.+.|+++.|++++.+.     ++.+|++|+|+|+|+|-
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHE-----NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHhc
Confidence            8899899999999999999999764     24799999999999974

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6.5e-25  Score=214.73  Aligned_cols=323  Identities=10%  Similarity=0.104  Sum_probs=255.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHH-hcCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCCch-
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGTSE-  150 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~l~~Li~lL~~-~~~~~~~~~a~~~L~ni~~~~~~-  150 (405)
                      ..+.+.+.|.+++...+..|+..|..+. .. ....+.+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+. 
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLS-l~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~  411 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLS-LK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEX  411 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHT-TS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHh-CC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCccc
Confidence            3577778888877777999999999984 32 23334444 45779999999996 45 78999999999999985431 


Q ss_pred             -------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 015537          151 -------------------------------------HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (405)
Q Consensus       151 -------------------------------------~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~  193 (405)
                                                           .+..+++.|++|.|+.++.++++.++++++|+|+||+.+ +..
T Consensus       412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~  490 (778)
T 3opb_A          412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNF  490 (778)
T ss_dssp             CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGG
T ss_pred             chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHH
Confidence                                                 356678899999999999999999999999999999977 669


Q ss_pred             HHHHHhcCChHHHHHhhhCCCch--hHHHHHHHHHHHhhcCC-CCCChh--hhhccHHHHHhhhcC-CCh----------
Q 015537          194 RDLVLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGK-PQPPFD--QVSPALPALAHLIHS-NDD----------  257 (405)
Q Consensus       194 ~~~i~~~~~i~~L~~~l~~~~~~--~~~~~a~~~l~~l~~~~-~~~~~~--~~~~~l~~L~~ll~~-~d~----------  257 (405)
                      |..+.+.|++++|+.++......  ..+..|+++|+++.... |...+.  ...+++|.|+.+|.. ++.          
T Consensus       491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~  570 (778)
T 3opb_A          491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ  570 (778)
T ss_dssp             HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred             HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence            99999999999999999554433  38999999999998653 222111  114899999999983 211          


Q ss_pred             ---HHHHHHHHHHHHhccCCh----hHHHHHHhc-CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcC--
Q 015537          258 ---EVLTDACWALSYLSDGTN----DKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--  327 (405)
Q Consensus       258 ---~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g--  327 (405)
                         --..+|+.+|.||+..++    +..+.++.. |+++.|..+|.+++..++..|+++++|++.+.+...+.+.+.+  
T Consensus       571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~  650 (778)
T 3opb_A          571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP  650 (778)
T ss_dssp             CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred             ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence               126799999999998762    334667874 9999999999999999999999999999985553222333222  


Q ss_pred             ----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          328 ----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV-HAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       328 ----~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                          .++.|+.++.++ +..+|++|+|+|+|++.+++...+.+++. ++++.++.++....+   +..+|..+..++.|+
T Consensus       651 ~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~---~~~l~~R~~~~l~NL  726 (778)
T 3opb_A          651 QSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQID---DIELRQRLLMLFFGL  726 (778)
T ss_dssp             HHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHH
T ss_pred             hhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCC---CHHHHHHHHHHHHHH
Confidence                388999999998 99999999999999988888888888875 899999999987311   236999999999998


Q ss_pred             cc
Q 015537          403 CC  404 (405)
Q Consensus       403 ~~  404 (405)
                      -|
T Consensus       727 ~~  728 (778)
T 3opb_A          727 FE  728 (778)
T ss_dssp             HT
T ss_pred             HH
Confidence            65

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.93  E-value=6.7e-25  Score=196.21  Aligned_cols=188  Identities=14%  Similarity=0.144  Sum_probs=170.6

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~  209 (405)
                      .+-+..|+..|.+++.. .++...+...|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            46789999999999987 667888899999999999 9999999999999999999999999999999999999999999


Q ss_pred             hhCCCchhHHHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH
Q 015537          210 LNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (405)
Q Consensus       210 l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  288 (405)
                      |..+++..+++.++|+|++++++.+... .....+++|.|+.+|+++++.++..++|+|++++.++++..+.+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            9656689999999999999999864322 223368999999999999999999999999999998888999999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHhHhhcCChhh
Q 015537          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (405)
Q Consensus       289 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  319 (405)
                      .|+.+|.+++..++..++++|+||+.+.+..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~  243 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG  243 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence            9999999999999999999999999885533

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.91  E-value=5e-23  Score=184.09  Aligned_cols=201  Identities=15%  Similarity=0.145  Sum_probs=173.3

Q ss_pred             cCHHHHHHhhcCCC------------hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHH-HhcCCCCHHHHHHHHH
Q 015537           73 ENLPVMVAGVWSND------------SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAW  139 (405)
Q Consensus        73 ~~l~~l~~~l~s~~------------~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~-lL~~~~~~~~~~~a~~  139 (405)
                      +.++..+..|.+++            .+.+..|+..|..++..  .+....+...|++|.|+. +|.+++ +.++..|+|
T Consensus        28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa~  104 (296)
T 1xqr_A           28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQ  104 (296)
T ss_dssp             HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHH
Confidence            34677777777642            35778899999998743  345667889999999999 999988 999999999


Q ss_pred             HHHHHhcCCchhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhH
Q 015537          140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM  218 (405)
Q Consensus       140 ~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~  218 (405)
                      +|++++.+++..++.+++.|++|.|+.+|++ +++.++..|+|+|+|++.+.+...+.+.+.|+++.|+.+| ++++..+
T Consensus       105 ~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~v  183 (296)
T 1xqr_A          105 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKL  183 (296)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHHH
Confidence            9999999999999999999999999999995 5889999999999999998887888888999999999999 6789999


Q ss_pred             HHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhH
Q 015537          219 LRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK  277 (405)
Q Consensus       219 ~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~  277 (405)
                      +..++|+|++++.+.+... .....|++|.|+.+|.++|+.++..++++|++++...+..
T Consensus       184 ~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~  243 (296)
T 1xqr_A          184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG  243 (296)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence            9999999999998853332 2334899999999999999999999999999999875543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=3.6e-23  Score=177.15  Aligned_cols=197  Identities=19%  Similarity=0.149  Sum_probs=171.8

Q ss_pred             cHHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537          117 VVPRFVEFLLREDYP--QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~--~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (405)
                      .+|.++++|.+++ +  +++..|+++|.+++.++++.+..+.+.|+||.|+.+|.++++++++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            4899999999988 6  899999999999999889999999999999999999999999999999999999999888899


Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc----------------CCChH
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------------SNDDE  258 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------~~d~~  258 (405)
                      ..+.+.|++++|+.+|..+.+.++++.++.+|++|+..+. .......+++|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            9999999999999999556789999999999999997643 233444678899888653                13679


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHhc-CChHHHHHhcCC------CCcchHHHHHHHHhHhhcC
Q 015537          259 VLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG  315 (405)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~  315 (405)
                      ++.++.++|.+|+..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.|++..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998887777878876 678999999954      2567889999999999854

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=174.26  Aligned_cols=196  Identities=16%  Similarity=0.191  Sum_probs=165.7

Q ss_pred             CHHHHHHhhcCCCh--HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           74 NLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        74 ~l~~l~~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      .+|.++++|.++++  ++|..|+..++++...+ .+....+++.|++|.|+++|++++ +++|+.|+|+|.|++.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            68999999999988  89999999999987554 567778999999999999999988 999999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh----C-----------CCc
Q 015537          152 TKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----G-----------QPK  215 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~----~-----------~~~  215 (405)
                      +..+.+.|+||.|+.+|. +++.+++++++.+|+||+.... .+..+.+ +++++|+.++.    .           ..+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence            999999999999999998 5789999999999999997654 6667766 46899988652    1           136


Q ss_pred             hhHHHHHHHHHHHhhcCCCCC-Chhh-hhccHHHHHhhhcC------CChHHHHHHHHHHHHhccC
Q 015537          216 LSMLRNATWTLSNFCRGKPQP-PFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDG  273 (405)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~~~-~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~  273 (405)
                      +.++++++++|.||+...+.. .... ..|+++.|+.+++.      .|...+++++.+|.+|+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            799999999999999865222 2222 25788999999875      2678999999999999864

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.88  E-value=7.4e-22  Score=193.28  Aligned_cols=307  Identities=11%  Similarity=0.087  Sum_probs=242.2

Q ss_pred             CHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCC-------------------C------------------chHHHHhc
Q 015537           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERS-------------------P------------------PIEEVIRS  115 (405)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~-------------------~------------------~~~~~~~~  115 (405)
                      .++.|++.+++ ++..+...++.+|.|++...+.                   |                  ....+++.
T Consensus       377 ~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea  456 (778)
T 3opb_A          377 FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT  456 (778)
T ss_dssp             HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence            47889999985 7888999999999999764321                   1                  12346689


Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHH---HHHHHHHHHHHhhCC-Ch
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD---VREQAVWALGNIAGD-SP  191 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~---i~~~a~~~L~nl~~~-~~  191 (405)
                      |++|.|+.++++++ +.++..|+|+|.|++.. +++|..+++.|+++.|+.+|.+....   .+..|+++|++++.. +|
T Consensus       457 GvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np  534 (778)
T 3opb_A          457 ELISFLKREMHNLS-PNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP  534 (778)
T ss_dssp             THHHHHHHHGGGSC-HHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred             cCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence            99999999999988 99999999999999876 99999999999999999999986544   899999999999844 34


Q ss_pred             hhHHHHH---hcCChHHHHHhhhCCCch-------------hHHHHHHHHHHHhhcCCCC----CChhhh--hccHHHHH
Q 015537          192 RCRDLVL---SQGGLVPLLAQLNGQPKL-------------SMLRNATWTLSNFCRGKPQ----PPFDQV--SPALPALA  249 (405)
Q Consensus       192 ~~~~~i~---~~~~i~~L~~~l~~~~~~-------------~~~~~a~~~l~~l~~~~~~----~~~~~~--~~~l~~L~  249 (405)
                      ..  .+-   ..|++++|+.+|..++..             .-...++.+|.||+..+.+    .....+  .+++|.|.
T Consensus       535 ~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~  612 (778)
T 3opb_A          535 GL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE  612 (778)
T ss_dssp             HH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence            22  111   137899999999522221             1277999999999998521    112223  37999999


Q ss_pred             hhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc------CChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHH
Q 015537          250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA------GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV  323 (405)
Q Consensus       250 ~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~------~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~  323 (405)
                      .++.+++..++..|++++++|+.......+.+...      +.++.|+.++.+++..++..|.++|+|++++.+.....+
T Consensus       613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l  692 (778)
T 3opb_A          613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL  692 (778)
T ss_dssp             HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            99999999999999999999997544322234322      237889999999999999999999999988888888888


Q ss_pred             Hhc-CchHHHHHhhcC--CCchhHHHHHHHHHHHHhc-----CCHHHHHHHH-HhCcHHHHHHHHhccccc
Q 015537          324 IEY-QALPCLLNLLSG--NYKKSIKKEACWTVSNITA-----GNREQIQVIM-HVHAFSIIVAFFFMFLHF  385 (405)
Q Consensus       324 ~~~-g~l~~L~~ll~~--~~~~~v~~~a~~~L~nl~~-----~~~~~~~~l~-~~~~i~~L~~lL~~~~~~  385 (405)
                      ++. ++++.++.++..  + ++.++..++.++.||+.     ++.+.+..+. +......|..+|++.+..
T Consensus       693 l~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~  762 (778)
T 3opb_A          693 LTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSG  762 (778)
T ss_dssp             TTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSC
T ss_pred             HHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCch
Confidence            887 799999999999  7 99999999999999995     3334455666 677888889999877544

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.79  E-value=5.9e-19  Score=182.30  Aligned_cols=314  Identities=15%  Similarity=0.124  Sum_probs=224.6

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHH-H---HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-V---IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~---~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~  149 (405)
                      .++.+++.+.++++..+..|+.+|..++... .+.... .   .-..+++.|++++++++ +.+|..|+++|.++....+
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence            4788899999999999999999999887542 111110 0   01346788888888777 8999999999998887644


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      ......+ .++++.++.++.++++.++..++++|+.++...+..-...+. +.++.++..+ .+.++.++..+++++..+
T Consensus       207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL  283 (852)
T ss_dssp             HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence            3211111 156788999999999999999999999999766543222122 3566777777 778899999999999999


Q ss_pred             hcCCCCCC--hhhhhccHHHHHhhhc-----------C-----------CChHHHHHHHHHHHHhccCChhHHHHHHhcC
Q 015537          230 CRGKPQPP--FDQVSPALPALAHLIH-----------S-----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (405)
Q Consensus       230 ~~~~~~~~--~~~~~~~l~~L~~ll~-----------~-----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (405)
                      ++......  ......++|.++..+.           +           .+..++..+..++..++....+.   ++ ..
T Consensus       284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~  359 (852)
T 4fdd_A          284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH  359 (852)
T ss_dssp             TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence            97631100  1123466777777762           2           12346788888888887543322   11 13


Q ss_pred             ChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV  365 (405)
Q Consensus       286 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (405)
                      +++.+..++.++++.++..|++++|+++.+....... .-.++++.+...+.++ ++.||..|+|++++++...+.....
T Consensus       360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~  437 (852)
T 4fdd_A          360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPD  437 (852)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHH
Confidence            5788888889999999999999999999887654432 2246899999999998 9999999999999998632221111


Q ss_pred             HHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          366 IMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       366 l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      ..-.++++.|+..|.+.     ++.||..|+|+|+++|
T Consensus       438 ~~~~~ll~~L~~~L~d~-----~~~vr~~a~~aL~~l~  470 (852)
T 4fdd_A          438 TYLKPLMTELLKRILDS-----NKRVQEAACSAFATLE  470 (852)
T ss_dssp             TTHHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHH
Confidence            11246777888877643     3579999999999997

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.77  E-value=9.1e-17  Score=153.54  Aligned_cols=325  Identities=16%  Similarity=0.150  Sum_probs=250.6

Q ss_pred             cCHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCch
Q 015537           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~-~~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      +.|+.|+.-+.+. -.+.+..|+..|+.+..    . ....+..++++.|+..|+.+ .+.++...++.+|.++...+++
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk----~-y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSK----K-YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT----T-TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHH----H-hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            5689999988864 47999999999999842    1 22334466799999999865 3478888899999998775432


Q ss_pred             -----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHH-hcCChHHHHHhh
Q 015537          151 -----------------HTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVL-SQGGLVPLLAQL  210 (405)
Q Consensus       151 -----------------~~~~~~-~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~-~~~~i~-~~~~i~~L~~~l  210 (405)
                                       ..+.++ +.+.|+.|+.+|++.+..++..++.+|..|+...+. .++.+. ..++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             223343 457899999999999999999999999999988876 777777 458999999999


Q ss_pred             hCCCchhHHHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCCC----hHHHHHHHHHHHHhccCChhHHHHHHhcC
Q 015537          211 NGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (405)
Q Consensus       211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (405)
                       .+..+.++..++..|.+|+.+++..+ ....+++++.|+.++....    ..+..+++.++.+|...+..+...+.+.|
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             77789999999999999999974443 3444799999999997654    47899999999999999988888999999


Q ss_pred             ChHHHHHhcCCCCcc------hHH---HHHHHHhHhhcCC------hhhHHHHHhcCchHHHHHhhcCCC-chhHHHHHH
Q 015537          286 VFPRLAEFLMHPSPS------VLI---PALRTVGNIVTGD------DMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEAC  349 (405)
Q Consensus       286 ~l~~L~~lL~~~~~~------v~~---~a~~~l~nl~~~~------~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~  349 (405)
                      .++.|..+|..+++.      ...   .++.++.-++..+      ......+.+.|+++.|++++.++. ...++.+|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999999755332      222   3666677777652      234567889999999999988652 568999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-----cHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          350 WTVSNITAGNREQIQVIMHVH-----AFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~-----~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      .+++.++.+++...+.+.+..     ..|.++.+|-+..+.....++|-+|++++..++
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            999999999999777766543     235555543222222223589999998887664

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.76  E-value=2.7e-16  Score=140.72  Aligned_cols=256  Identities=14%  Similarity=0.078  Sum_probs=201.5

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      ..++.++..|.++++.++..|++.|.++..            .+.++.|+.+|.+++ +.++..|+++|+.+...... .
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~~-~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-E   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT-H
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc-c
Confidence            468999999999999999999999998741            235899999999888 89999999999998653221 1


Q ss_pred             HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          153 KVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       153 ~~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      .     .+++.|. .++.++++.++..++++|+++....+...     ...++.|+..+ .++++.++..++++|.++..
T Consensus        89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            1     1334444 34677899999999999999974433221     23567888888 88999999999999998764


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      .          ..+|.|..++.++++.++..++++|+.+....+         .+++.|+.+|.++++.++..|+++|++
T Consensus       158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2          478999999999999999999999999853332         245789999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhH
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAII  391 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~v  391 (405)
                      +.           +...++.|..++.++ +  ++..++++|+.+..           ..++|.|..++....+.    .+
T Consensus       219 ~~-----------~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~----~~  269 (280)
T 1oyz_A          219 RK-----------DKRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDN----EI  269 (280)
T ss_dssp             TT-----------CGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCC----HH
T ss_pred             hC-----------CHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCc----HH
Confidence            85           235788899999876 3  89999999999843           26789999999776544    68


Q ss_pred             HHHHHHHHhh
Q 015537          392 YKLAIWLCLV  401 (405)
Q Consensus       392 r~~A~~al~n  401 (405)
                      +.++..+|.+
T Consensus       270 ~~~~~~~l~~  279 (280)
T 1oyz_A          270 ITSAIDKLKR  279 (280)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhhc
Confidence            8888877653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.75  E-value=6.4e-17  Score=144.79  Aligned_cols=229  Identities=14%  Similarity=0.101  Sum_probs=183.6

Q ss_pred             HhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 015537          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (405)
Q Consensus       113 ~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~  192 (405)
                      ...+.++.|+..|.+++ +.++..|+++|+++..           .++++.|+.+|.++++.++..++++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            35567999999999887 9999999999999863           14688999999999999999999999998744332


Q ss_pred             hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (405)
Q Consensus       193 ~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (405)
                      ...      .++.|.+.+.+++++.++..++++|..+....+    ......++.|..++.++++.++..++++|+++..
T Consensus        88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            111      223344333478899999999999999985432    1224678899999999999999999999998753


Q ss_pred             CChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 015537          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (405)
Q Consensus       273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  352 (405)
                                 .+.++.|+.+|.++++.++..|+++|+.+....+         .+++.|..++.++ ++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                       2478999999999999999999999999853332         3567889999988 999999999999


Q ss_pred             HHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          353 SNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       353 ~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      +++.           +...++.|+..|.+.       +||..|.++|+++
T Consensus       217 ~~~~-----------~~~~~~~L~~~l~d~-------~vr~~a~~aL~~i  248 (280)
T 1oyz_A          217 SYRK-----------DKRVLSVLCDELKKN-------TVYDDIIEAAGEL  248 (280)
T ss_dssp             HHTT-----------CGGGHHHHHHHHTSS-------SCCHHHHHHHHHH
T ss_pred             HHhC-----------CHhhHHHHHHHhcCc-------cHHHHHHHHHHhc
Confidence            9985           346788899988653       4899999999875

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.74  E-value=5.1e-17  Score=167.83  Aligned_cols=308  Identities=13%  Similarity=0.114  Sum_probs=226.3

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      -+.+++.+.++++.++..++.++..++..+....     -.++++.|++.+.+++ +.++..++.+|+.++...+.....
T Consensus        92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~  165 (852)
T 4fdd_A           92 KSECLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS  165 (852)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence            3566777888889999999999999987541111     2457999999999888 899999999999998864433211


Q ss_pred             HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537          155 VI----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (405)
Q Consensus       155 ~~----~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  230 (405)
                      -.    -..+++.++.++.++++.++..|+++|+++....+..-... -.+.++.+...+ .++++.++..++++|..++
T Consensus       166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~  243 (852)
T 4fdd_A          166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLL  243 (852)
T ss_dssp             CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence            00    12467888888889999999999999999886544211110 113566777777 7889999999999999999


Q ss_pred             cCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhc-----------CC
Q 015537          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL-----------MH  296 (405)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL-----------~~  296 (405)
                      ...+......+.++++.+..++.+.++.++..+++.+..++.....  ...+..   .+++.++..+           .+
T Consensus       244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d  321 (852)
T 4fdd_A          244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD  321 (852)
T ss_dssp             HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred             HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence            8754333334567888888999999999999999999999865421  112221   3456666666           23


Q ss_pred             -----------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 015537          297 -----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV  365 (405)
Q Consensus       297 -----------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (405)
                                 .+..++..|..+|+.++...+..   ++ ..+++.+...+.++ ++.+|..|+|+|++++.+..+....
T Consensus       322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~  396 (852)
T 4fdd_A          322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP  396 (852)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence                       23467899999999998643321   11 24678888889888 9999999999999999887765543


Q ss_pred             HHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          366 IMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       366 l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      . -.+++|.++..+.+.     ++.||..|+|+++++|
T Consensus       397 ~-l~~~l~~l~~~l~d~-----~~~Vr~~a~~~l~~l~  428 (852)
T 4fdd_A          397 Y-LPELIPHLIQCLSDK-----KALVRSITCWTLSRYA  428 (852)
T ss_dssp             G-HHHHHHHHHHHTTCS-----SHHHHHHHHHHHHHTH
T ss_pred             H-HHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHH
Confidence            2 356788888888543     3579999999999987

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.71  E-value=1.7e-15  Score=144.82  Aligned_cols=294  Identities=13%  Similarity=0.186  Sum_probs=229.3

Q ss_pred             cCHHHHHHhhcC--CChHHHHHHHHHHHHhhccCCCC----------------chHHHH-hcCcHHHHHHHhcCCCCHHH
Q 015537           73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSP----------------PIEEVI-RSGVVPRFVEFLLREDYPQL  133 (405)
Q Consensus        73 ~~l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~----------------~~~~~~-~~g~l~~Li~lL~~~~~~~~  133 (405)
                      .+++.++..|+.  +|.++...++..|.++++.+..+                ..+.++ +.+.++.|+.+|+..+ -.+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            478999999986  57888888999998887754221                112333 4678999999999888 899


Q ss_pred             HHHHHHHHHHHhcCCch-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhh
Q 015537          134 QFEAAWALTNIASGTSE-HTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (405)
Q Consensus       134 ~~~a~~~L~ni~~~~~~-~~~~~~~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~  211 (405)
                      +..++.+|..++...++ .++.+... ++++.|+.+|.++...++..++..|.+|+.+++..++.+.-.|+++.|++++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999998777 67777754 99999999999999999999999999999999999999998999999999995


Q ss_pred             CCC---chhHHHHHHHHHHHhhcCCCCC-ChhhhhccHHHHHhhhcCCCh------HHHHH---HHHHHHHhccCC----
Q 015537          212 GQP---KLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDD------EVLTD---ACWALSYLSDGT----  274 (405)
Q Consensus       212 ~~~---~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~------~v~~~---a~~~l~~l~~~~----  274 (405)
                      ...   -..+...++.++.+|.++++.. ......+++|.|..++..+++      ....+   ++.++.-++..+    
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            332   2467899999999999997433 333347899999999875432      13333   455555555442    


Q ss_pred             --hhHHHHHHhcCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCChhhHHHHHhcC---------chHHHHHhhcCCCc
Q 015537          275 --NDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---------ALPCLLNLLSGNYK  341 (405)
Q Consensus       275 --~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g---------~l~~L~~ll~~~~~  341 (405)
                        ..+...+.+.|+++.++.++...  ...++..|+.+++.+..+++...+.+.+..         ++..|+.++.+.+.
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence              24556788999999999999765  567899999999999999987776665432         44445555666657


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015537          342 KSIKKEACWTVSNITAGNREQIQVIM  367 (405)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (405)
                      ..+|-+|+.++..+..++++....++
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~  404 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQGEIV  404 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            89999999999999998887544444

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.65  E-value=8.4e-16  Score=151.85  Aligned_cols=224  Identities=17%  Similarity=0.135  Sum_probs=161.0

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      ++.+.+.+.++|+.++..|+.++.++..   .+..     ..+++.+.++|.+++ +.+|..|+++++++...+++..  
T Consensus        88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~-----~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~--  156 (591)
T 2vgl_B           88 VNSFVKDCEDPNPLIRALAVRTMGCIRV---DKIT-----EYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV--  156 (591)
T ss_dssp             HHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGH-----HHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH--
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHH-----HHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc--
Confidence            4455555666677777777766666531   1111     224677899999887 9999999999999998766633  


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                       .+.++++.|..+|.++++.++..|+++|+.++.+++..+......+.+..|+..+ .+.++-.+..++.++..++... 
T Consensus       157 -~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~-  233 (591)
T 2vgl_B          157 -EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD-  233 (591)
T ss_dssp             -HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS-
T ss_pred             -ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC-
Confidence             2346789999999999999999999999999987763210111123456677777 4567777777888887776332 


Q ss_pred             CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC---ChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                         ......+++.+..++++.++.|+..|++++.++...   +++..+.+. ..+.+.|+.++. +++.++..|+.+|+.
T Consensus       234 ---~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~  308 (591)
T 2vgl_B          234 ---DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINL  308 (591)
T ss_dssp             ---HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence               233467888999999999999999999999999752   334444332 345677776664 788999999999999


Q ss_pred             hhcCCh
Q 015537          312 IVTGDD  317 (405)
Q Consensus       312 l~~~~~  317 (405)
                      ++...+
T Consensus       309 i~~~~p  314 (591)
T 2vgl_B          309 IVQKRP  314 (591)
T ss_dssp             HHHHCC
T ss_pred             HHHhCh
Confidence            986443

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.64  E-value=1.3e-14  Score=143.38  Aligned_cols=295  Identities=14%  Similarity=0.131  Sum_probs=213.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh---
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH---  151 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~---  151 (405)
                      ++.+.+.+.+.++.++..|+.++.++.... .+.   +.+.++++.+.++|.+++ +.++..|+++|+.++..+++.   
T Consensus       123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~---~~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~  197 (591)
T 2vgl_B          123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQM---VEDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLL  197 (591)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCC---HHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhh---cccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccch
Confidence            566888999999999999999999998654 222   223577899999999877 999999999999999876532   


Q ss_pred             ------HHHHHh----------------------------CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC---ChhhH
Q 015537          152 ------TKVVID----------------------------HGAVPIFVKLLYSPSDDVREQAVWALGNIAGD---SPRCR  194 (405)
Q Consensus       152 ------~~~~~~----------------------------~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~---~~~~~  194 (405)
                            -..++.                            ..+++.+..++++.++.|+..|++++..+...   ++...
T Consensus       198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~  277 (591)
T 2vgl_B          198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY  277 (591)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred             hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence                  111111                            13456667777888999999999999998742   23222


Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (405)
                      ..+. ..+.++|+.++ . +++.++..++.+|..+....|......    +..+. .+.+++..++..+++.+..++...
T Consensus       278 ~~~~-~~~~~~L~~L~-~-~d~~vr~~aL~~l~~i~~~~p~~~~~~----~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~  349 (591)
T 2vgl_B          278 NMLL-KKLAPPLVTLL-S-GEPEVQYVALRNINLIVQKRPEILKQE----IKVFF-VKYNDPIYVKLEKLDIMIRLASQA  349 (591)
T ss_dssp             HHHH-HHTHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHCCSTTTTC----TTTTS-CCTTSCHHHHHHHHHHHHHTCCSS
T ss_pred             HHHH-HHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHhChHHHHHH----HHhhe-eccCChHHHHHHHHHHHHHHCChh
Confidence            2222 23567777665 3 788999999999999998654332221    11112 222445889999999999987544


Q ss_pred             hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                      .  ++     .+++.|..++.+.+.+++..++++|+.++...+....     ..++.|+.++.+. ...++.++..++.+
T Consensus       350 n--v~-----~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~-~~~v~~e~i~~l~~  416 (591)
T 2vgl_B          350 N--IA-----QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTK-VNYVVQEAIVVIRD  416 (591)
T ss_dssp             T--HH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred             h--HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence            3  33     2457788888888999999999999999976653333     4678899999888 88888888888888


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          355 ITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      +....++.     ...+++.|++.+....    ++.++..++|+||.+|-
T Consensus       417 ii~~~p~~-----~~~~v~~L~~~l~~~~----~~~~~~~~~wilGey~~  457 (591)
T 2vgl_B          417 IFRKYPNK-----YESIIATLCENLDSLD----EPDARAAMIWIVGEYAE  457 (591)
T ss_dssp             HHHHSCSS-----CCTTHHHHHHTTTTCC----SHHHHHHHHHHHHTTCT
T ss_pred             HHHHCcch-----HHHHHHHHHHHHHhcc----CHHHHHHHHHHHHcccc
Confidence            87644432     2567788888776432    35789999999998863

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.63  E-value=1.9e-15  Score=144.79  Aligned_cols=308  Identities=13%  Similarity=0.068  Sum_probs=212.7

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC-chhH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT-SEHT  152 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~--~~~~~~~~a~~~L~ni~~~~-~~~~  152 (405)
                      ..+++.+.++++.+ ..++.++..++... .+ ..  .-.+++|.|++.+.++  + +.++..|+.+|+.++... ++..
T Consensus        93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~-~~-~~--~w~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~  166 (462)
T 1ibr_B           93 NYVLQTLGTETYRP-SSASQCVAGIACAE-IP-VN--QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQL  166 (462)
T ss_dssp             HHHHHHTTCCCSSS-CSHHHHHHHHHHHH-GG-GT--CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGT
T ss_pred             HHHHHHhCCCCchh-hHHHHHHHHHHHHh-cc-cc--ccHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhh
Confidence            44666777766666 67777777776532 11 00  1246799999999887  6 899999999999998743 2221


Q ss_pred             HHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHH-HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          153 KVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~~~-~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      .... ..+++.++.++.++  ++.++..++++++++...-...-. .......++.+...+ .+.+..++..++++|..+
T Consensus       167 ~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~l  244 (462)
T 1ibr_B          167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI  244 (462)
T ss_dssp             GGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred             HhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence            1111 14678889999887  799999999999998643221100 000111244444444 778899999999999999


Q ss_pred             hcCCCCCChhhhh-ccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh---------------------hHHHHHHhcCCh
Q 015537          230 CRGKPQPPFDQVS-PALPALAHLIHSNDDEVLTDACWALSYLSDGTN---------------------DKIQAVIEAGVF  287 (405)
Q Consensus       230 ~~~~~~~~~~~~~-~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~---------------------~~~~~~~~~~~l  287 (405)
                      +...+..-...+. .+++.++..+.+.++.++..+++.+..++....                     ....... ..++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  323 (462)
T 1ibr_B          245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV  323 (462)
T ss_dssp             HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence            9875433333445 788888888888899999999999988875321                     0111001 2356


Q ss_pred             HHHHHhcCC-------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537          288 PRLAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (405)
Q Consensus       288 ~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  360 (405)
                      |.++..+..       .++.++..|+.+|+.++..-..   .++ ..+++.+...+.++ ++.+|..|+++|+.++.+..
T Consensus       324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~  398 (462)
T 1ibr_B          324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPE  398 (462)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCc
Confidence            667777743       3457899999999999865432   122 25678888888888 99999999999999987543


Q ss_pred             -HHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          361 -EQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       361 -~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                       +.....+ ..++|.++..|.+.     ++.||..|+|+|+++|
T Consensus       399 ~~~~~~~l-~~~~~~l~~~l~d~-----~~~Vr~~a~~~l~~~~  436 (462)
T 1ibr_B          399 PSQLKPLV-IQAMPTLIELMKDP-----SVVVRDTAAWTVGRIC  436 (462)
T ss_dssp             TTTTCTTT-TTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHH
Confidence             2222112 57888999988654     3579999999999987

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.63  E-value=1.1e-14  Score=144.00  Aligned_cols=302  Identities=11%  Similarity=0.050  Sum_probs=221.3

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      ++.+++.++.+++.++..|+..+..+...-............++|.+..++++++ +.++..++++|+.++..-...   
T Consensus       283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~~---  358 (588)
T 1b3u_A          283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGKD---  358 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCHH---
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhHh---
Confidence            5677777888888888888888888865431111111233567889999998888 899999999999987632111   


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                      .....++|.+..++.+++++++..++.+++.++.....  +. .....++.+..++ .+.+..++..++.++..++...+
T Consensus       359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~  434 (588)
T 1b3u_A          359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLG  434 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHcC
Confidence            11235789999999999999999999999998753221  11 1233567777777 77889999999999999986432


Q ss_pred             CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      ..  .....++|.+..++.+++..++..++.+++.++......   .....++|.+..++.+++..++..++++++.++.
T Consensus       435 ~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~  509 (588)
T 1b3u_A          435 VE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE  509 (588)
T ss_dssp             GG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence            11  122467899999999999999999999999987543221   1234678899998888899999999999999985


Q ss_pred             CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHH
Q 015537          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYK  393 (405)
Q Consensus       315 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~  393 (405)
                      .-..   ...-..+++.|..++.++ ++.+|..++++|+.++.. .+.    .....++|.|..++. +.    +++||.
T Consensus       510 ~~~~---~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~p~l~~l~~-d~----d~~vr~  576 (588)
T 1b3u_A          510 VCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNS----TLQSEVKPILEKLTQ-DQ----DVDVKY  576 (588)
T ss_dssp             HHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHH----HHHHHHHHHHHHHTT-CS----SHHHHH
T ss_pred             hcCH---HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchh----hhHHHHHHHHHHHcC-CC----chhHHH
Confidence            3221   123346899999999998 999999999999999863 222    123456677777543 32    348999


Q ss_pred             HHHHHHhhh
Q 015537          394 LAIWLCLVT  402 (405)
Q Consensus       394 ~A~~al~n~  402 (405)
                      .|++|++.+
T Consensus       577 ~a~~al~~l  585 (588)
T 1b3u_A          577 FAQEALTVL  585 (588)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999865

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.62  E-value=3.5e-14  Score=140.31  Aligned_cols=303  Identities=14%  Similarity=0.062  Sum_probs=221.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      -++.+...+.++++.++..|+..+.++....  +.  ..+...++|.+..+..+++ +..|..|+.+++.++......  
T Consensus        88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~--~~--~~~~~~l~~~l~~l~~~~~-~~~R~~a~~~l~~~~~~~~~~--  160 (588)
T 1b3u_A           88 LLPPLESLATVEETVVRDKAVESLRAISHEH--SP--SDLEAHFVPLVKRLAGGDW-FTSRTSACGLFSVCYPRVSSA--  160 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTS--CH--HHHHHTHHHHHHHHHTCSS-HHHHHHHGGGHHHHTTTSCHH--
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHC--CH--HHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhcCHH--
Confidence            3566666667788999999999999997542  21  2233446777777777766 899999999999998764432  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                        ....+++.+..++.++++.++..++.+|+.++...+.   .......++.+..++ ++++..++..++.++..++...
T Consensus       161 --~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~  234 (588)
T 1b3u_A          161 --VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             --HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHS
T ss_pred             --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhC
Confidence              1235688888999999999999999999999865432   112344677777777 7888999999999999998764


Q ss_pred             CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhh
Q 015537          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~  313 (405)
                      +.  ......++|.+..++.++++.++..++.+++.++......   .....+++.++.++.++++.++..++.+++.++
T Consensus       235 ~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  309 (588)
T 1b3u_A          235 PQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             CH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            32  2334568899999998889999999999999997542211   233467899999999999999999999999998


Q ss_pred             cCChhh-HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537          314 TGDDMQ-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY  392 (405)
Q Consensus       314 ~~~~~~-~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr  392 (405)
                      ...... .....-..++|.+..++.++ ++.+|..++|+|+.++..-..   ......++|.+..++...     ++.||
T Consensus       310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~-----~~~Vr  380 (588)
T 1b3u_A          310 ENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDE-----CPEVR  380 (588)
T ss_dssp             HTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCS-----CHHHH
T ss_pred             HHhChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCC-----chHHH
Confidence            654321 11122346789999999988 999999999999999752111   111234677777777543     23577


Q ss_pred             HHHHHHHhhhc
Q 015537          393 KLAIWLCLVTC  403 (405)
Q Consensus       393 ~~A~~al~n~~  403 (405)
                      ..|..+++.++
T Consensus       381 ~~a~~~l~~l~  391 (588)
T 1b3u_A          381 LNIISNLDCVN  391 (588)
T ss_dssp             HHHHTTCHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777766654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.61  E-value=1.2e-14  Score=150.43  Aligned_cols=316  Identities=16%  Similarity=0.174  Sum_probs=219.1

Q ss_pred             CHHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCch
Q 015537           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      .++.+++.+.++  ++.++..++.++..++..- .+..-.-.-..+++.+...+.+++ ++.++..|+.+|++++..-..
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            478888899888  8999999999999987532 111101112346778888888762 389999999999998764222


Q ss_pred             hH-HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          151 HT-KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       151 ~~-~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      .. .......+++.+...+.+++++++..++.+|..++...+..-...+....++.++..+ .+.++.++..+++++..+
T Consensus       208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence            11 0011113577788888888999999999999999865443222222335667777766 777889999999999988


Q ss_pred             hcCC----------------C---CCCh--hhhhccHHHHHhhhcC-------CChHHHHHHHHHHHHhccCChhHHHHH
Q 015537          230 CRGK----------------P---QPPF--DQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV  281 (405)
Q Consensus       230 ~~~~----------------~---~~~~--~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~  281 (405)
                      +...                |   ....  .....++|.++..+..       ++..++..+..++..++....+.   +
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~  363 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence            7641                1   1111  1225667777777752       34678899999999887543321   1


Q ss_pred             HhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (405)
Q Consensus       282 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  360 (405)
                      + ..+++.+...+.+.++.++..|++++|.++.+.. ......+ .++++.++..+.++ ++.+|..|+|+|++++...+
T Consensus       364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred             H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence            1 2456777888888999999999999999998764 3333222 35899999999988 89999999999999986433


Q ss_pred             HHH-HHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          361 EQI-QVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       361 ~~~-~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      ... ..-.-..+++.|+..|.+.      +.||..|+|+|+++|
T Consensus       441 ~~~~~~~~l~~~l~~l~~~l~~~------~~v~~~a~~al~~l~  478 (876)
T 1qgr_A          441 EAAINDVYLAPLLQCLIEGLSAE------PRVASNVCWAFSSLA  478 (876)
T ss_dssp             GGTSSTTTHHHHHHHHHHHTTSC------HHHHHHHHHHHHHHH
T ss_pred             hhcccHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHH
Confidence            211 0000134566777777542      479999999999987

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.60  E-value=4.5e-14  Score=120.57  Aligned_cols=187  Identities=21%  Similarity=0.180  Sum_probs=158.8

Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (405)
Q Consensus       115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (405)
                      .+.++.|+.+|.+++ +.++..|+++|+.+..           .++++.|+.+|.++++.++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457999999999887 9999999999998754           2578999999999999999999999999852      


Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (405)
                           .+.++.|+..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23678888888 88899999999999999854          2578999999999999999999999999843  


Q ss_pred             hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                               ...++.|..++.++++.++..++.+|+.+..           ...++.|..++.++ ++.+|..|.++|++
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2357889999999999999999999999842           23577788999888 99999999999999


Q ss_pred             HhcC
Q 015537          355 ITAG  358 (405)
Q Consensus       355 l~~~  358 (405)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            9754

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.59  E-value=5.2e-14  Score=119.21  Aligned_cols=185  Identities=22%  Similarity=0.201  Sum_probs=159.3

Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (405)
Q Consensus       115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (405)
                      .+..+.++++|.+++ +.++..|+++|+.+..           .+.++.|+.+|.++++.++..++++|+.+..      
T Consensus        13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            456899999999998 9999999999998754           2578999999999999999999999999842      


Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (405)
                           .+.++.|+..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        75 -----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  136 (201)
T 3ltj_A           75 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  136 (201)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence                 23678888888 78899999999999999854          2578899999999999999999999999853  


Q ss_pred             hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                               .+.++.|..++.++++.++..|+++|+.+.  .+         ..++.|..++.++ ++.+|..|.++|++
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLET  195 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence                     246788999999999999999999999983  22         3577888899888 99999999999998


Q ss_pred             Hh
Q 015537          355 IT  356 (405)
Q Consensus       355 l~  356 (405)
                      +.
T Consensus       196 l~  197 (201)
T 3ltj_A          196 HK  197 (201)
T ss_dssp             CC
T ss_pred             HH
Confidence            74

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.59  E-value=1.1e-13  Score=137.38  Aligned_cols=293  Identities=15%  Similarity=0.101  Sum_probs=209.2

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      .....+++.+.+++...+.-+.-.+..++..+  +  +..+  -+++.|.+-|++++ +.++..|+++|+++..  ++. 
T Consensus        70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~--e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~-  139 (618)
T 1w63_A           70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDER--Q--DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEM-  139 (618)
T ss_dssp             GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--H--HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHH-
T ss_pred             chHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--c--HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHH-
Confidence            35788899999999888888888888876422  1  1111  14778888888888 8999999999999974  332 


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                         . ..+++.+..+|.++++.++..|+.+++++....|+..     .+.++.+..++ .+.++.++..++++|..++..
T Consensus       140 ---~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          140 ---C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             ---H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCS
T ss_pred             ---H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHh
Confidence               2 2567889999999999999999999999997666432     24677777777 788999999999999999876


Q ss_pred             CCCCChhhhhccHHHHHhhhcC---------------CChHHHHHHHHHHHHhccCChhHHH-------HHH--------
Q 015537          233 KPQPPFDQVSPALPALAHLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQ-------AVI--------  282 (405)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~---------------~d~~v~~~a~~~l~~l~~~~~~~~~-------~~~--------  282 (405)
                      .+.. ......++|.++.+|..               .++..+..++.+|+.++..+++...       .+.        
T Consensus       210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~  288 (618)
T 1w63_A          210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKN  288 (618)
T ss_dssp             HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSST
T ss_pred             ChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccc
Confidence            4321 22334566666665542               3677777777777777655432110       000        


Q ss_pred             --------------h--------cCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC
Q 015537          283 --------------E--------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY  340 (405)
Q Consensus       283 --------------~--------~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~  340 (405)
                                    .        ..+++.|..+|.+.++.++..|+.+|+.++...+..    +. ...+.+..++.++ 
T Consensus       289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-  362 (618)
T 1w63_A          289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-  362 (618)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-
T ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-
Confidence                          0        024567777888888899999999999988654432    21 3567788888888 


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          341 KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      +..+|+.|..+|..++....  ++.     +++.|...+.+.     ++++|.++..+|+++|-
T Consensus       363 d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-----d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          363 DVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-----EPEFKADCASGIFLAAE  414 (618)
T ss_dssp             CHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-----CHHHHHHHHHHHHHHHH
Confidence            89999999999999976321  222     245666666543     34799999999999874

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.57  E-value=8.6e-14  Score=133.28  Aligned_cols=278  Identities=17%  Similarity=0.201  Sum_probs=195.5

Q ss_pred             cCHHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCc
Q 015537           73 ENLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTS  149 (405)
Q Consensus        73 ~~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~  149 (405)
                      +.++.+++.+.++  ++..+..|+.+|..+............ -..+++.++.+|.++. ++.++..|+++++++...-.
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3578899999988  899999999999999753211111111 1247888999998872 38999999999999765322


Q ss_pred             hhHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          150 EHTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       150 ~~~~-~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                      .... .....-+++.+...+.++++.++..++++|..++...+..-...+..++++.++..+ .+.+..++..+++++..
T Consensus       207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~  285 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSN  285 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence            1110 001112466777788888999999999999999865442111111114556666666 67788999999999999


Q ss_pred             hhcCC---------------C--CCChh----hhhccHHHHHhhhcCC-------ChHHHHHHHHHHHHhccCChhHHHH
Q 015537          229 FCRGK---------------P--QPPFD----QVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQA  280 (405)
Q Consensus       229 l~~~~---------------~--~~~~~----~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~  280 (405)
                      ++...               +  .....    ....++|.++..+...       +..++..++.+|..++....+.   
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---  362 (462)
T 1ibr_B          286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---  362 (462)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---
T ss_pred             HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---
Confidence            88642               0  01111    1255677777777432       3578999999999988654321   


Q ss_pred             HHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (405)
Q Consensus       281 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (405)
                      ++ ..+++.+...+.+.++.++..|+.++|.++.+.. ......+ ..+++.++..+.++ ++.+|..|+|+|++++..
T Consensus       363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence            12 2467888889999999999999999999998664 2211112 46899999999998 899999999999999863

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.56  E-value=1.9e-13  Score=116.61  Aligned_cols=188  Identities=20%  Similarity=0.181  Sum_probs=157.8

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      +.++.+++.|+++++.++..|+..|..+..            .+.++.|+++|.+++ +.++..|+++|+.+..      
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            468999999999999999999999998732            246899999999887 9999999999999853      


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                           .+.++.|+.+|.++++.++..++++|+.+..           .+.++.|+.++ .++++.++..++++|..+.. 
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence                 2578999999999999999999999999853           23678888888 88999999999999999843 


Q ss_pred             CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                               ...++.|..++.++++.++..++++|+.+..           ..+++.|..++.++++.++..|..+|+++
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                     2578999999999999999999999999853           12457888889889999999999999998


Q ss_pred             hcCCh
Q 015537          313 VTGDD  317 (405)
Q Consensus       313 ~~~~~  317 (405)
                      .....
T Consensus       202 ~~~~~  206 (211)
T 3ltm_A          202 KSFNH  206 (211)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            76543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.56  E-value=1.9e-13  Score=115.67  Aligned_cols=183  Identities=22%  Similarity=0.212  Sum_probs=154.3

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh
Q 015537          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF  238 (405)
Q Consensus       159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  238 (405)
                      +..+.++.+|.++++.++..++++|+.+..           .+.++.|+..+ .++++.++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            567899999999999999999999998753           23678899999 78899999999999998853       


Q ss_pred             hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh
Q 015537          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (405)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~  318 (405)
                         ...++.|..++.++++.++..++++|+.+..           ...++.|+.+|.++++.++..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               2678999999999999999999999999753           2357889999999999999999999999852    


Q ss_pred             hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL  398 (405)
Q Consensus       319 ~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a  398 (405)
                             .+.++.|..++.++ ++.+|..|+++|+.+  +.++         .++.|..++.+.     ++.||..|.++
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~--~~~~---------~~~~L~~~l~d~-----~~~vr~~A~~a  192 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEI--GGER---------VRAAMEKLAETG-----TGFARKVAVNY  192 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHH--CSHH---------HHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHh--Cchh---------HHHHHHHHHhCC-----CHHHHHHHHHH
Confidence                   25688899999988 999999999999999  3333         466777777553     24799999999


Q ss_pred             Hhhh
Q 015537          399 CLVT  402 (405)
Q Consensus       399 l~n~  402 (405)
                      |+++
T Consensus       193 L~~l  196 (201)
T 3ltj_A          193 LETH  196 (201)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            9875

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.53  E-value=2.5e-13  Score=140.31  Aligned_cols=315  Identities=14%  Similarity=0.143  Sum_probs=214.4

Q ss_pred             CHHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCCc--hHHHHhcCcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC
Q 015537           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT  148 (405)
Q Consensus        74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~l~~Li~lL~~~--~~~~~~~~a~~~L~ni~~~~  148 (405)
                      .++.+++.+.++ ++..+..++.++..+...-....  ... ....+++.+...+.++  + +.++..|+.+|+++...-
T Consensus       135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~-~~vr~~al~~l~~~~~~~  212 (861)
T 2bpt_A          135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETS-KAVRLAALNALADSLIFI  212 (861)
T ss_dssp             HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHHHHHH
Confidence            478888888888 89999999999988875321110  111 1233577788888876  5 899999999999975421


Q ss_pred             chhHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537          149 SEHTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (405)
Q Consensus       149 ~~~~~-~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~  227 (405)
                      ..... ......+++.|...+.++++.++..++.+|..++...+..-...+....++.++..+ .+.+..++..++.++.
T Consensus       213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~vr~~a~~~l~  291 (861)
T 2bpt_A          213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM-KSPNDKVASMTVEFWS  291 (861)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHT-TCSSHHHHHHHHHHHH
T ss_pred             HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHH
Confidence            11100 000113567778888889999999999999999854332111111113555566666 6778999999999999


Q ss_pred             HhhcCCC---------------CCC--hhhhhccHHHHHhhhcCC-------ChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537          228 NFCRGKP---------------QPP--FDQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAVIE  283 (405)
Q Consensus       228 ~l~~~~~---------------~~~--~~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~~~~  283 (405)
                      .++....               ...  ......++|.++..+...       +..++..+..+|..++....+..   + 
T Consensus       292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~---~-  367 (861)
T 2bpt_A          292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI---L-  367 (861)
T ss_dssp             HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG---H-
T ss_pred             HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhH---H-
Confidence            8887520               011  122366788888877642       35788999999998875432211   1 


Q ss_pred             cCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 015537          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ  362 (405)
Q Consensus       284 ~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~  362 (405)
                      ..+++.+...+.+.++.++..|++++|.++.+.. ......+. .+++.++..+.++ ++.+|..++|++++++......
T Consensus       368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~  445 (861)
T 2bpt_A          368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAES  445 (861)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhh
Confidence            1346777888888899999999999999997753 33333333 5789999999988 9999999999999998531110


Q ss_pred             H-HHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          363 I-QVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       363 ~-~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      . ..-.-..++|.|+..+.+.      +.+|..|+|+++++|
T Consensus       446 ~~~~~~~~~~l~~l~~~l~~~------~~v~~~a~~al~~l~  481 (861)
T 2bpt_A          446 IDPQQHLPGVVQACLIGLQDH------PKVATNCSWTIINLV  481 (861)
T ss_dssp             SCTTTTHHHHHHHHHHHHTSC------HHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHH
Confidence            0 0001134567777777542      479999999999986

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.53  E-value=2.8e-13  Score=139.99  Aligned_cols=316  Identities=16%  Similarity=0.100  Sum_probs=216.3

Q ss_pred             HHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchH-HHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIE-EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~-~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      ++.+...+.++  ++.++..|+.++..++..- ..... ......+++.+...+.+++ +.++..++.+|..++...++.
T Consensus       181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~  258 (861)
T 2bpt_A          181 LIAIVQGAQSTETSKAVRLAALNALADSLIFI-KNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTF  258 (861)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHccChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            45566667766  7899999999998875321 00000 0011235777778887777 899999999999998764443


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-----------------hHHHHHhcCChHHHHHhhhCC-
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-----------------CRDLVLSQGGLVPLLAQLNGQ-  213 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~-----------------~~~~i~~~~~i~~L~~~l~~~-  213 (405)
                      -...+...+++.+...+.+.++.++..++.++..++.....                 .-.... ...++.++..+... 
T Consensus       259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~  337 (861)
T 2bpt_A          259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQN  337 (861)
T ss_dssp             CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcc
Confidence            33333336778888888889999999999999998754211                 001111 23566777777431 


Q ss_pred             -----CchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh-hHHHHHHhcCCh
Q 015537          214 -----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVF  287 (405)
Q Consensus       214 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l  287 (405)
                           .+..++..+..+|..++...+   ......+++.+...+.+.++.++..++++++.++.+.. +.....+. .++
T Consensus       338 ~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il  413 (861)
T 2bpt_A          338 EDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QAL  413 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHH
T ss_pred             cccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHH
Confidence                 235788999999999987543   22345677888888888899999999999999997753 43333332 478


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHhHhhcCChhhH-HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC----HHH
Q 015537          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN----REQ  362 (405)
Q Consensus       288 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~----~~~  362 (405)
                      +.++..+.++++.++..+++++|.++..-.... ..-.-..+++.++..+.++  +.++..+||+|.+++.+.    ++.
T Consensus       414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~  491 (861)
T 2bpt_A          414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSP  491 (861)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchh
Confidence            889999999999999999999999985321100 0001124577888888654  789999999999997531    111


Q ss_pred             HHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          363 IQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       363 ~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      +...+ ..+++.|+.++.+.+.   ++.+|..|..+++.++
T Consensus       492 l~~~~-~~il~~L~~~l~~~d~---~~~vr~~a~~al~~l~  528 (861)
T 2bpt_A          492 IYNFY-PALVDGLIGAANRIDN---EFNARASAFSALTTMV  528 (861)
T ss_dssp             GGGGH-HHHHHHHHHHHTCSCC---GGGHHHHHHHHHHHHH
T ss_pred             hHHHH-HHHHHHHHHHHhCcCc---chHHHHHHHHHHHHHH
Confidence            11111 3457778888865432   2479999999998764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.49  E-value=8.1e-13  Score=136.76  Aligned_cols=308  Identities=12%  Similarity=0.072  Sum_probs=213.3

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC-chhH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT-SEHT  152 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~--~~~~~~~~a~~~L~ni~~~~-~~~~  152 (405)
                      +.+++.+.++++.+ ..++.++..++... .+ ..  .-..+++.|++.+.++  + +.++..++.+|+.++... ++..
T Consensus        93 ~~ll~~l~~~~~~~-~~~~~~l~~i~~~~-~~-~~--~w~~ll~~l~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~  166 (876)
T 1qgr_A           93 NYVLHTLGTETYRP-SSASQCVAGIACAE-IP-VN--QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQL  166 (876)
T ss_dssp             HHHHHHTTTCCSSS-CHHHHHHHHHHHHH-GG-GT--CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHhCCCcHHH-HHHHHHHHHHHHhh-Cc-cc--ccHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhcCHhhH
Confidence            34777777777666 77777777776432 11 00  1245789999999888  6 899999999999998642 2210


Q ss_pred             HHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          153 KVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~--~~~i~~~a~~~L~nl~~~~~~~-~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      .. .-..+++.+...+.++  +..++..++.++++++..-... ........+++.+...+ .+.+..++..++.+|..+
T Consensus       167 ~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~-~~~~~~vr~~a~~~l~~l  244 (876)
T 1qgr_A          167 QD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI  244 (876)
T ss_dssp             GG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred             Hh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHH
Confidence            00 1124667788888876  6899999999999988542211 00011112455556655 677889999999999999


Q ss_pred             hcCCCCCChhhhh-ccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh---------------------hHHHHHHhcCCh
Q 015537          230 CRGKPQPPFDQVS-PALPALAHLIHSNDDEVLTDACWALSYLSDGTN---------------------DKIQAVIEAGVF  287 (405)
Q Consensus       230 ~~~~~~~~~~~~~-~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~---------------------~~~~~~~~~~~l  287 (405)
                      +...+..-...+. .+++.+...+.+.++.++..++..+..++....                     ......+ ..++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll  323 (876)
T 1qgr_A          245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV  323 (876)
T ss_dssp             HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHh
Confidence            9865544344455 788888888888889999999999888875321                     0111011 2356


Q ss_pred             HHHHHhcC-------CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537          288 PRLAEFLM-------HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (405)
Q Consensus       288 ~~L~~lL~-------~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  360 (405)
                      +.++..|.       +.++.++..|..+++.++......   ++ ..+++.+...+.++ ++.+|..|+|++++++.+..
T Consensus       324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~  398 (876)
T 1qgr_A          324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPE  398 (876)
T ss_dssp             HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hH-HHHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCC
Confidence            67777774       345689999999999998643321   12 24677788888888 99999999999999987643


Q ss_pred             -HHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          361 -EQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       361 -~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                       +.....+ .+++|.++..|...     ++.||..|+|+++++|
T Consensus       399 ~~~~~~~~-~~~l~~l~~~l~d~-----~~~vr~~a~~~l~~~~  436 (876)
T 1qgr_A          399 PSQLKPLV-IQAMPTLIELMKDP-----SVVVRDTAAWTVGRIC  436 (876)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHH
Confidence             4444433 45889999988653     3579999999999987

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.47  E-value=3.3e-12  Score=126.62  Aligned_cols=255  Identities=14%  Similarity=0.086  Sum_probs=181.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+..+.+.|+++++.++..|++++.++..    +   .+. ..+++.+..+|.+++ +.+|..|+.++.++...+++...
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence            45677777888888888888888888852    1   122 345888999999988 99999999999999987676432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhC--------------CCchhHH
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------QPKLSML  219 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~--------------~~~~~~~  219 (405)
                           +.++.+..+|.+.++.++..|+++|+.++..++.....+  ...++.++.+|.+              ..++-.+
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q  251 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ  251 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence                 678888999999999999999999999997765432222  1345555555421              2355555


Q ss_pred             HHHHHHHHHhhcCCCCCC--------------------------------------hhhhhccHHHHHhhhcCCChHHHH
Q 015537          220 RNATWTLSNFCRGKPQPP--------------------------------------FDQVSPALPALAHLIHSNDDEVLT  261 (405)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~--------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~  261 (405)
                      ..++.+|..++..+|...                                      ......+++.|..++.++|+.++.
T Consensus       252 ~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~  331 (618)
T 1w63_A          252 VRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY  331 (618)
T ss_dssp             HHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence            556666666655432100                                      001123456677777777888888


Q ss_pred             HHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCc
Q 015537          262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK  341 (405)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~  341 (405)
                      .++.+|..++...+..    +. ...+.++.++.+++..++..|+.++..++....  .+.     +++.|...+.+. +
T Consensus       332 ~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d  398 (618)
T 1w63_A          332 VALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-E  398 (618)
T ss_dssp             HHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-C
T ss_pred             HHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-C
Confidence            8888888887544332    21 345688888999999999999999999986543  222     345677777777 8


Q ss_pred             hhHHHHHHHHHHHHhc
Q 015537          342 KSIKKEACWTVSNITA  357 (405)
Q Consensus       342 ~~v~~~a~~~L~nl~~  357 (405)
                      ..+|..+..+|+.++.
T Consensus       399 ~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          399 PEFKADCASGIFLAAE  414 (618)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8899999999999976

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.41  E-value=1.7e-12  Score=139.21  Aligned_cols=272  Identities=14%  Similarity=0.120  Sum_probs=200.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .++.+++.+.+.|++.+..|...|.+.+... ....+.-....+++.+++.|.+.+ +.+|..|+.+|++++...++.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence            4789999999999999999999998876543 111111122356888999998777 999999999999999864441  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh------HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHH
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~------~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~  227 (405)
                      .+  ..+++.|+..+.++++.++..++.+|+.++......      ... .....++.|+..+..+++..++..++.++.
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            11  246788889898889999999999999998543321      111 123467888888843578899999999999


Q ss_pred             HhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC-CcchHHHHH
Q 015537          228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPAL  306 (405)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~  306 (405)
                      .++...+.........+++.+...+.++++.++..++.+++.++....+.   + -..+++.++..|.+. +..++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHH
Confidence            99975433333345778889999999889999999999999998765432   1 124577788777544 346788899


Q ss_pred             HHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (405)
Q Consensus       307 ~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (405)
                      .+++.++...+..... .-..+++.+...+.+. ++.+|..+.++++.++..
T Consensus       236 ~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            9999998654332111 1136899999999988 899999999999999874

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.34  E-value=1.9e-11  Score=122.50  Aligned_cols=215  Identities=16%  Similarity=0.123  Sum_probs=158.5

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-Chhh
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGD-SPRC  193 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~-~~~~  193 (405)
                      .++| +++.|++++ +..|..|+++|+|++.+ +..+..+...|+|..++ .+|.+++.+++..|+++|.||+.+ ++..
T Consensus        35 ~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           35 KILP-VLKDLKSPD-AKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             TTHH-HHHHHSSSC-CSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hHHH-HHHHcCCCC-HHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            3444 567789888 89999999999999975 88888999999887765 578889999999999999999965 4667


Q ss_pred             HHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC
Q 015537          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (405)
Q Consensus       194 ~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (405)
                      .+.+...|++++|+.++.+         ....+..+......... .....+           .++...++.+|.+|+.+
T Consensus       112 ~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~L~e~  170 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGLLALA  170 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHh---------hHHHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHHHHhC
Confidence            7888899999999999831         22222222211100000 001111           23456677888888888


Q ss_pred             ChhHHHHHHhcCChHHHHHhcCCC---CcchHHHHHHHHhHhhcCChhhHHHHHhcCch---HHHHHhhcCCCchhHHHH
Q 015537          274 TNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKE  347 (405)
Q Consensus       274 ~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l---~~L~~ll~~~~~~~v~~~  347 (405)
                      +++....+...++++.++.+|.+.   ..+++..|+.+|.+++..++...+.+.+.+..   ..+..+..+  +...+..
T Consensus       171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~~l  248 (684)
T 4gmo_A          171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDPRAVM  248 (684)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCTTHHH
T ss_pred             CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcHHHHH
Confidence            888888888899999999998432   35799999999999999999888888887743   333333333  3456889


Q ss_pred             HHHHHHHHh
Q 015537          348 ACWTVSNIT  356 (405)
Q Consensus       348 a~~~L~nl~  356 (405)
                      +|++|.|+.
T Consensus       249 a~giL~Ni~  257 (684)
T 4gmo_A          249 ACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhHh
Confidence            999999985

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.34  E-value=8.9e-10  Score=108.96  Aligned_cols=297  Identities=15%  Similarity=0.121  Sum_probs=200.8

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      .....+++.+.+++...+.-+.-.+..++..+  +  +.++  =+++.+.+=|++++ +.++..|+.+|+++..  ++..
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~  144 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIR--LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMA  144 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHH--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHH--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence            46789999999999999988888888886432  2  2211  13667777888888 9999999999999955  4422


Q ss_pred             HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537          153 KVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  230 (405)
                      .     .+++.+..+|  .+.++.|+..|+.++.++...+|+.   +...+.++.+..+| .+.++.++..++.++..++
T Consensus       145 ~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          145 E-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             H-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence            2     4678999999  8899999999999999999766532   22246888898888 8889999999999999998


Q ss_pred             cCCCCCChhhhhccHHHHHhhhcCC-------------ChHHHHHHHHHHHHhccCC-hhHHHH-------HH-------
Q 015537          231 RGKPQPPFDQVSPALPALAHLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQA-------VI-------  282 (405)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~-------~~-------  282 (405)
                      ...+..-......++..|..++..+             ++..+...+..+..++..+ ++....       ++       
T Consensus       216 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~  295 (621)
T 2vgl_A          216 QKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP  295 (621)
T ss_dssp             HHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence            7653210011111222222222111             3445555555555544321 111110       00       


Q ss_pred             -------------------------------hcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHH
Q 015537          283 -------------------------------EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC  331 (405)
Q Consensus       283 -------------------------------~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~  331 (405)
                                                     -..++..|..+|.+.++.++..++..|..++...+. .. .+ ....+.
T Consensus       296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~~  372 (621)
T 2vgl_A          296 KSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIET  372 (621)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHHH
Confidence                                           012355677778888889999999999998876532 11 22 245777


Q ss_pred             HHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          332 LLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       332 L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      ++..+. ++ +..||..+.-+|..++  ++.++..+     +..|.+.+...     ++++|.++..+|+.+|
T Consensus       373 i~~~L~~d~-d~~Ir~~aL~lL~~l~--~~~Nv~~I-----v~eL~~yl~~~-----d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          373 VINALKTER-DVSVRQRAVDLLYAMC--DRSNAQQI-----VAEMLSYLETA-----DYSIREEIVLKVAILA  432 (621)
T ss_dssp             HHHHHTTCC-CHHHHHHHHHHHHHHC--CHHHHHHH-----HHHHHHHHHHC-----CHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCC-CHhHHHHHHHHHHHHc--ChhhHHHH-----HHHHHHHHHhc-----CHHHHHHHHHHHHHHH
Confidence            888888 77 8999999999999996  44555544     44566666543     2468999999998876

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.23  E-value=1.3e-10  Score=124.69  Aligned_cols=315  Identities=12%  Similarity=0.123  Sum_probs=209.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCC----chHHHHhcCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSP----PIEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGT  148 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~----~~~~~~~~g~l~~Li~lL~~-~~~~~~~~~a~~~L~ni~~~~  148 (405)
                      .++.++..+.++++.++..|+.++..++..-..+    ....-....++|.|+..+.+ ++ +.++..|+.+|+.++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            3567777888888888888888888886543111    01111234578999999984 55 899999999999998532


Q ss_pred             chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                      ........ ..+++.|+..|.++++.++..++.+|+.++...+.   .++ ...++.++..+....+..++..++.++..
T Consensus       166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HHH-HHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            22111111 24667788888888999999999999999965442   121 23577888887555445677888999998


Q ss_pred             hhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC------------
Q 015537          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------------  296 (405)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~------------  296 (405)
                      ++...+..-......++|.+...+.+++++++..+++++..++....+.....+ ..+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence            887654333334578999999999988999999999999988765433221111 2334555444421            


Q ss_pred             -------------------------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 015537          297 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (405)
Q Consensus       297 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~  351 (405)
                                               ..+.++..|+.+++.++...+.....++ ..+++.++..+.+. ++.+|..+.-+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     1235688899999999874443233333 36788888888877 88999999988


Q ss_pred             HHHHhc--CC-----------------HHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          352 VSNITA--GN-----------------REQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       352 L~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      +..++.  +.                 .......+ ..+++.+...+.+.     ++.+|..++.+++.++
T Consensus       398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~-----~~~vr~~~~~~L~~l~  462 (1230)
T 1u6g_C          398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEK-----SVKTRQCCFNMLTELV  462 (1230)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCS-----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccC-----CHHHHHHHHHHHHHHH
Confidence            887764  11                 11112221 33555566656543     3468988888888764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.16  E-value=1.3e-09  Score=109.37  Aligned_cols=268  Identities=13%  Similarity=0.130  Sum_probs=182.1

Q ss_pred             CHHHHHHhhc---CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-------CHHHHHHHHHHHHH
Q 015537           74 NLPVMVAGVW---SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTN  143 (405)
Q Consensus        74 ~l~~l~~~l~---s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-------~~~~~~~a~~~L~n  143 (405)
                      ++..+-..|.   ++++.++.-|+..+.-+-++..    .     .++..|...|.+++       .+.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            3455555565   5567777778877777755431    1     14677777776543       26789999999999


Q ss_pred             HhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHH
Q 015537          144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (405)
Q Consensus       144 i~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~  223 (405)
                      +..++...       .+++.|..+|.+++..+.+.++.+||-+..+...       ..++..|+..+....+..+++.++
T Consensus       464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHH
Confidence            87764321       2567788888887777888999999987533321       113456666665666889999999


Q ss_pred             HHHHHhhcCCCCCChhhhhccHHHHHhhhc-CCChHHHHHHHHHHHH--hccCChhHHHHHHhcCChHHHHHh-cCCCCc
Q 015537          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSP  299 (405)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~  299 (405)
                      .+|..+..+.+        ..++.++..|. +.++.++..++.+++-  .-.++...+         +.|+.. ..+.+.
T Consensus       530 lgLGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aI---------q~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV---------KRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHH---------HHHHHHHHHCSCH
T ss_pred             HHHHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHH---------HHHHHHhccCCcH
Confidence            99998877653        44555666554 4678888888777654  334444433         333333 356677


Q ss_pred             chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 015537          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFF  379 (405)
Q Consensus       300 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL  379 (405)
                      .++..|+.+||.|..++++         .++.++.++.+..++.+|..|+++|+.++++++.  .     .++..|..++
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~-----~aid~L~~L~  656 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q-----SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H-----HHHHHHHHHc
Confidence            8999999999999888752         3455666555444999999999999999987663  1     2344455544


Q ss_pred             hcccccchhhhHHHHHHHHHhhh
Q 015537          380 FMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       380 ~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      . +.+    ..||+.|+.+||..
T Consensus       657 ~-D~d----~~Vrq~Ai~ALG~I  674 (963)
T 4ady_A          657 K-DPV----DFVRQAAMIALSMI  674 (963)
T ss_dssp             T-CSS----HHHHHHHHHHHHHH
T ss_pred             c-CCC----HHHHHHHHHHHHHH
Confidence            3 333    37999999999853

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.14  E-value=1e-10  Score=117.10  Aligned_cols=199  Identities=14%  Similarity=0.062  Sum_probs=152.0

Q ss_pred             CChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHH-HHhhhcCCChHHHHHHHHHHHHhccC-ChhHH
Q 015537          201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA-LAHLIHSNDDEVLTDACWALSYLSDG-TNDKI  278 (405)
Q Consensus       201 ~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~  278 (405)
                      ..+.|+++.| +++++..+..|+++|++|+.+..........++++. +..+|.+++.+|+..|+++|.+|+.. ..+..
T Consensus        34 ~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3577888988 889999999999999999975333333344667654 56788889999999999999999854 56777


Q ss_pred             HHHHhcCChHHHHHhcCCCC---------------------cchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhc
Q 015537          279 QAVIEAGVFPRLAEFLMHPS---------------------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS  337 (405)
Q Consensus       279 ~~~~~~~~l~~L~~lL~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~  337 (405)
                      ..++..|+++.|..+|....                     ..+...++.+|.+++.+++.....+...+.++.|+.+|.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            88999999999998874210                     124456788999999888888888888999999999985


Q ss_pred             CC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          338 GN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       338 ~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      +.  ....++..|+.+|.+++..+++.++.+.+.+....+.-++....+.   ...|..+++.|.|..
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~---~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT---DPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS---CTTHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC---cHHHHHHHHHHHhHh
Confidence            43  2467999999999999999999999888876544333333211111   135788999998864

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.09  E-value=2.2e-09  Score=106.17  Aligned_cols=253  Identities=14%  Similarity=0.106  Sum_probs=142.9

Q ss_pred             HHHHHhh--cCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           76 PVMVAGV--WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        76 ~~l~~~l--~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      +.+.+.+  .+.++.++..|+.++.++....  |  +.+...+.++.+.++|.+.+ +.++..|+.+|..++..+++.- 
T Consensus       149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p--~~~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~-  222 (621)
T 2vgl_A          149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTS--P--DLVPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEEF-  222 (621)
T ss_dssp             THHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--G--GGCCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHHH-
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--h--hhcCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHHH-
Confidence            3334444  4445555555555555554321  1  11112478999999998777 9999999999999988655421 


Q ss_pred             HHHhCCChHHHHH----hhCCC-------------CHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCC--
Q 015537          154 VVIDHGAVPIFVK----LLYSP-------------SDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQ--  213 (405)
Q Consensus       154 ~~~~~g~i~~L~~----lL~~~-------------~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~--  213 (405)
                          ...+|.++.    ++..+             ++-++...+..|+.++.. ++..++.+.+  .+..++..+...  
T Consensus       223 ----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~k  296 (621)
T 2vgl_A          223 ----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPK  296 (621)
T ss_dssp             ----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCS
T ss_pred             ----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcc
Confidence                123333333    33211             566777777777777653 3434333322  233333322111  


Q ss_pred             ------Cc--hhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcC
Q 015537          214 ------PK--LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (405)
Q Consensus       214 ------~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (405)
                            .+  ..+...++.++..+..     .......++..|..++.++|+.++..++.+|..++...+. .. ++. .
T Consensus       297 s~~l~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~  368 (621)
T 2vgl_A          297 SKKVQHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-T  368 (621)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-T
T ss_pred             cccccccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-H
Confidence                  12  2666666777666641     2233455666777777777777777777777777765432 11 121 2


Q ss_pred             ChHHHHHhcC-CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          286 VFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       286 ~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      ....++..|. +++..++..++.++..++.  +...+.     ++..|...+... +..++.++...++.++
T Consensus       369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          369 HIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETA-DYSIREEIVLKVAILA  432 (621)
T ss_dssp             THHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            4566666666 6677777777777777663  222332     233455555555 5666666666666554

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.09  E-value=1.8e-08  Score=79.91  Aligned_cols=188  Identities=15%  Similarity=0.194  Sum_probs=156.1

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCC
Q 015537          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP  236 (405)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~  236 (405)
                      +..++..++.+|.++-..++.+|+..+.+++...++..+.     .+..|+.++.++.....-.....++..++.-.|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            3457888999999999999999999999999988876444     345677777788888888899999999998755  


Q ss_pred             ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC
Q 015537          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (405)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  316 (405)
                        ..+.+.+|.+..-..-.|+.++.+...+|..++..+++...     +++.-+..+|.+++..-+..|+..|+.+....
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              45678899998888889999999999999999988887655     44578889999999888888888888876544


Q ss_pred             hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015537          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (405)
Q Consensus       317 ~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (405)
                      ...   +  ..++|.|..+|.+. +.-+|..|.-+|.+++..++....
T Consensus       176 ~~y---v--~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRk  217 (253)
T 2db0_A          176 FKY---V--NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRK  217 (253)
T ss_dssp             HHH---H--GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             ccc---c--CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHH
Confidence            332   2  26899999999999 999999999999999998888443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.01  E-value=1.9e-07  Score=74.12  Aligned_cols=216  Identities=16%  Similarity=0.186  Sum_probs=167.1

Q ss_pred             hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChh
Q 015537          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPR  192 (405)
Q Consensus       114 ~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~~~  192 (405)
                      +..++..++.+|+++- ..++..|+.++.+++...++.....     +..|+.+++ +....+.+....++|.++...|+
T Consensus        30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            5678999999999887 8999999999999999877765544     345555554 56677777888999999987775


Q ss_pred             hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (405)
Q Consensus       193 ~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (405)
                      .-+     +.++.+..-+ .-.++.++.+..++|..+.+..|    ....+++.-+..++.+.|..=+..++..++.+..
T Consensus       104 ~v~-----~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          104 LVK-----SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HHH-----HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HHH-----hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            322     2455555555 56699999999999999998865    3345666778888998887777778888887776


Q ss_pred             CChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 015537          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (405)
Q Consensus       273 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  352 (405)
                      +....+.     -.+|+|..+|.+.+.-++..|+.+|++++..++..+..+.+      .+.=+++. +..+.+..--.|
T Consensus       174 n~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~-S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDT-SSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCS-CHHHHHHHHHHH
T ss_pred             cCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCc-HHHHHHHHHHHH
Confidence            6655433     56899999999999999999999999999999876664433      45556666 777888887888


Q ss_pred             HHHhc
Q 015537          353 SNITA  357 (405)
Q Consensus       353 ~nl~~  357 (405)
                      +.++.
T Consensus       242 ~rl~l  246 (253)
T 2db0_A          242 SRLLL  246 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.90  E-value=1.2e-07  Score=85.97  Aligned_cols=251  Identities=13%  Similarity=0.084  Sum_probs=166.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+..+++.+.++|...+.-..-.+..+.... ++    ++  =++..|.+=+++++ +-++-.|+++|++|...  +...
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e----~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~--~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-ED----VI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITDS--TMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SC----GG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT--TTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HH----HH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH--HHHH
Confidence            4677888999999999988888887775331 22    22  24788888899988 99999999999999874  3222


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                           .+.+.+.+.|.+.++.|+..|+.+..++....|+.   +  .+++..+-+++ .+.++.++.+++.++..++..+
T Consensus       139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence                 35677888899999999999999999999888753   2  35888888888 8889999999999999998763


Q ss_pred             CCCChhhhhccHHHHHhhhcC---CChHHHHHHHHHHHHhccCC-hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537          234 PQPPFDQVSPALPALAHLIHS---NDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~---~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l  309 (405)
                      +        ..+..++..+..   .++..+...++.+..++..+ +..     ...+++.+..+|++.++.|...|+++|
T Consensus       208 ~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          208 R--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             H--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred             h--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            1        133344443333   25666666777776666544 222     235678889999999999999999999


Q ss_pred             hHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 015537          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (405)
Q Consensus       310 ~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (405)
                      ..+...+..    +. ..++..|..++.++ ++.+|-.|...|..+....|+.++
T Consensus       275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~  323 (355)
T 3tjz_B          275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVT  323 (355)
T ss_dssp             TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------
T ss_pred             HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHH
Confidence            887542221    11 24566777888888 999999999999999887777554

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.88  E-value=2.5e-08  Score=86.66  Aligned_cols=185  Identities=13%  Similarity=0.089  Sum_probs=141.4

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~-~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      +.+.+.+.+.++..+..|+..|..++.+. ......- -..+++.|...+. +.+ ..++..|+.+|+.++..-...-..
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~-~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGE-YGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCC-CHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCC-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHH
Confidence            35788889999999999999999998762 1111100 1245788888895 777 899999999999998642221112


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-  233 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-  233 (405)
                      .+ ..++|.++..+.++++.+++.+..+|..++...+ . +     ..++.+...+ ++.++.++..++..|..+.... 
T Consensus        95 ~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           95 YA-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESL-SNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcC
Confidence            22 2478999999999999999999999999987543 2 1     2466778888 6789999999999999966553 


Q ss_pred             CC-CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537          234 PQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (405)
Q Consensus       234 ~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (405)
                      +. .....+..++|.+..++.+.+++++..|..+++.++.
T Consensus       166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            33 2344557899999999999999999999999998864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.88  E-value=7.3e-09  Score=90.06  Aligned_cols=184  Identities=12%  Similarity=0.132  Sum_probs=139.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-hhhHHH
Q 015537          119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDS-PRCRDL  196 (405)
Q Consensus       119 ~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a~~~L~nl~~~~-~~~~~~  196 (405)
                      +.+.+.+.+.+ +..|..|+..|..+..+.+....... ..+++.|...+. +.+..++..++.+++.++..- +.+...
T Consensus        18 ~~l~~~l~s~~-w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           18 KDFYDKLEEKK-WTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             TTHHHHHTCSS-HHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHHhhhccCC-HHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            45778888877 89999999999999876332110000 135778888884 899999999999999999432 222121


Q ss_pred             HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC-h
Q 015537          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT-N  275 (405)
Q Consensus       197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~-~  275 (405)
                      +  ..+++.++..+ .+++..++..+..++..++...+      ...++|.+...+.+.++.++..++..|+.+.... +
T Consensus        96 ~--~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 A--SACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             H--HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             H--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            1  23678888888 77889999999999999987632      3568899999999999999999999999965442 3


Q ss_pred             hH-HHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          276 DK-IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       276 ~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      +. ....+ ..+++.++.+|.+.++.+|..|..+++.++.
T Consensus       167 ~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          167 TALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            21 12222 2578999999999999999999999999884

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.85  E-value=8.5e-07  Score=89.34  Aligned_cols=273  Identities=14%  Similarity=0.078  Sum_probs=184.0

Q ss_pred             HHHHHHhhcCCC--------hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537           75 LPVMVAGVWSND--------SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (405)
Q Consensus        75 l~~l~~~l~s~~--------~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~  146 (405)
                      +..|...|.+++        +.++..|+..|.-...++.++        .+++.|..+|.+++ +.++..|+.+|+-+..
T Consensus       431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v  501 (963)
T 4ady_A          431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML  501 (963)
T ss_dssp             HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence            444555555443        556666777776654443111        24777888888777 6778899999998855


Q ss_pred             CCchhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHH
Q 015537          147 GTSEHTKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (405)
Q Consensus       147 ~~~~~~~~~~~~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~  225 (405)
                      ++...       .++..|+..+ .+.+..++..++.+|+.+....+.         .++.++..|..+.++.++..++.+
T Consensus       502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a  565 (963)
T 4ady_A          502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT  565 (963)
T ss_dssp             TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence            53322       1344555543 456789999999999999766553         466778888777889999988888


Q ss_pred             HHHhhcCCCCCChhhhhccHHHHHhhh-cCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHH
Q 015537          226 LSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLI  303 (405)
Q Consensus       226 l~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~  303 (405)
                      +.--+-+..+      ...++.|++.+ .+.+..++..|+.+|+.+.-++++         .++.++.+| .+.++.+|.
T Consensus       566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~  630 (963)
T 4ady_A          566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC  630 (963)
T ss_dssp             HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred             HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence            8755544221      13444444433 456788999999999998766653         346666654 678899999


Q ss_pred             HHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH----HHHHHHhCcHHHHHHHH
Q 015537          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ----IQVIMHVHAFSIIVAFF  379 (405)
Q Consensus       304 ~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~~~i~~L~~lL  379 (405)
                      .+..++|.++.+++..       .+++.|..+..++ +..||..|+.+|+.+..++.+.    +..     +...|....
T Consensus       631 gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~  697 (963)
T 4ady_A          631 GTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVI  697 (963)
T ss_dssp             HHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHH
Confidence            9999999999887632       2456778888888 9999999999999999865443    222     223344444


Q ss_pred             hcccccchhhhHHHHHHHHHhhhc
Q 015537          380 FMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       380 ~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      ... ++  ++..+=-|..|.|-.+
T Consensus       698 ~dk-~~--d~~~~fga~iAqGll~  718 (963)
T 4ady_A          698 TNK-HQ--EGLAKFGACVAQGIMN  718 (963)
T ss_dssp             HCS-SS--CHHHHHHHHHHHHHHT
T ss_pred             hcc-cc--cHHHHHHHHHHHHHHh
Confidence            321 11  2456777777776543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.84  E-value=2.4e-08  Score=86.86  Aligned_cols=191  Identities=13%  Similarity=0.149  Sum_probs=141.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH-HhcCCchhHHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hhhH
Q 015537          120 RFVEFLLREDYPQLQFEAAWALTN-IASGTSEHTKVVID-HGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDS--PRCR  194 (405)
Q Consensus       120 ~Li~lL~~~~~~~~~~~a~~~L~n-i~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~i~~~a~~~L~nl~~~~--~~~~  194 (405)
                      .|.+.+.+.+ +.-|.+|+..|.. ++.+.++....-.+ ..++..|...+ ++.+..++..|+.+|+.|+.+-  +.+.
T Consensus        20 ~f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           20 DFQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             THHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             hHHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence            3566777877 8999999999999 87653332100000 13567788888 6889999999999999998422  2222


Q ss_pred             -HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCCh-hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537          195 -DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (405)
Q Consensus       195 -~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (405)
                       ...  .-.++.++..+ .+....++..+..++..++..-+.... .....+++.|...+++.++.++..++.+|..++.
T Consensus        99 ~~y~--~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A           99 KDYV--SLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HHHH--HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence             221  12578888888 777788999999999999986422221 1256788999999999999999999999999886


Q ss_pred             CCh---hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          273 GTN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       273 ~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      ...   ......+...++|.+..++.+.++.+|..|..+++.++.
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            544   323233335789999999999999999999999999873

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.82  E-value=1.2e-07  Score=85.83  Aligned_cols=243  Identities=12%  Similarity=0.069  Sum_probs=140.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      ....+.+.++++++-++-.|++.+.++...   +..+.     +.+.+.+.|.+.+ |-++..|+.+...+....++.. 
T Consensus       105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v-  174 (355)
T 3tjz_B          105 VTSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVV-  174 (355)
T ss_dssp             GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHH-
T ss_pred             HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHH-
Confidence            568888899999999999999999999632   33333     4677888888888 9999999999999998877743 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC--chhHHHHHHHHHHHhhc
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCR  231 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~  231 (405)
                         + +.++.+-.++.+.++.++.+|+.+|..+...+..         .+..++..+....  ++-.+...+..+..++.
T Consensus       175 ---~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~  241 (355)
T 3tjz_B          175 ---K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE  241 (355)
T ss_dssp             ---H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred             ---H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence               2 6899999999999999999999999999875532         3344555554422  45444445555555544


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      .+   ........++.+..+|++.++.|.-+|++++..+...+..    .. ..++..+..+|.++++.++..|++.|..
T Consensus       242 ~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~  313 (355)
T 3tjz_B          242 DE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNK  313 (355)
T ss_dssp             ------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred             cc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            42   1122356778888999999999999999999998653222    11 2446777788889999999999999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (405)
                      ++...+...+     ..-.-+..++.++ +..+...|.-+|.
T Consensus       314 l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittll  349 (355)
T 3tjz_B          314 VAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTLL  349 (355)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHhh
Confidence            9987765433     2344567788888 7777666655543

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.82  E-value=1.4e-07  Score=78.14  Aligned_cols=186  Identities=16%  Similarity=0.187  Sum_probs=150.4

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (405)
                      +.+..|..+|...+ +.++..|+.+|..+...-+...+...-...++.++.++.+.+..+.-.|+.+|..+..+.|-..+
T Consensus        33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            46888999998888 99999999999999886445444444447899999999999999999999999999988765444


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (405)
                      .+..  ....+.+++ ..+++-++..++..+..+-      .......++..+..++.+.|..++..++.++.+++..+.
T Consensus       112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklk------v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQ------PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCC------BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCC------cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            4433  567888888 6889999999999999881      112235677888999999999999999999999987543


Q ss_pred             --hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC
Q 015537          276 --DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (405)
Q Consensus       276 --~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  316 (405)
                        +..     .+++.-+-.+|++.|+.++..|+.++-.+.+..
T Consensus       183 D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          183 DSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             SCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence              222     256677888999999999999999999998653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.81  E-value=2.5e-07  Score=76.60  Aligned_cols=186  Identities=15%  Similarity=0.141  Sum_probs=149.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .+..++.+|+..|+.++..|+.++.++++.- +.......-..+++.++.++.+.+ +.+...|+.||..+..+.+-.-.
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHH
Confidence            4688899999999999999999999999763 333444445567999999999888 99999999999999998776666


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      .+..  ++.+|..++.++++-+.+.++..++.+---++       ..+++..+..++ .+.|..++..+..++.+++...
T Consensus       112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhccc
Confidence            5553  67889999999999999999999999932222       123566788888 9999999999999999999864


Q ss_pred             CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC
Q 015537          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (405)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (405)
                      ..  .....+++.-+-.++++.|+.++.-|+.++-.+...
T Consensus       182 ~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          182 AD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             SS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            22  222345556667788999999999999999988754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.75  E-value=1.4e-09  Score=84.97  Aligned_cols=121  Identities=19%  Similarity=0.161  Sum_probs=90.6

Q ss_pred             hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHH
Q 015537          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (405)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~  321 (405)
                      ...++.+..+|+++++.++..++++|+.+...            .++.|+.+|.++++.++..|+++||++..  +    
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~----   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E----   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence            45677889999999999999999999876421            25889999999999999999999999852  1    


Q ss_pred             HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhh
Q 015537          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       322 ~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n  401 (405)
                           ..++.|..++.++ ++.||..|+|+|+++.  ++         +.++.|+.+|.+.     ++.||..|.++|++
T Consensus        73 -----~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~-----~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 -----RAVEPLIKLLEDD-SGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETG-----TGFARKVAVNYLET  130 (131)
T ss_dssp             -----HHHHHHHHHHHHC-CTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSC-----CTHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCC-----CHHHHHHHHHHHHh
Confidence                 2478889999888 9999999999999994  22         3467888888643     24799999999986


Q ss_pred             h
Q 015537          402 T  402 (405)
Q Consensus       402 ~  402 (405)
                      .
T Consensus       131 i  131 (131)
T 1te4_A          131 H  131 (131)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.72  E-value=1.7e-07  Score=81.55  Aligned_cols=194  Identities=10%  Similarity=0.096  Sum_probs=141.9

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH-hhCCChhhHHHHHh-cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-CCCh-
Q 015537          163 IFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF-  238 (405)
Q Consensus       163 ~L~~lL~~~~~~i~~~a~~~L~n-l~~~~~~~~~~i~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~-  238 (405)
                      .+...+.+.++.-|..++..|+. ++.+.+.......+ ...+..|...+.++.+..++..++.++..|+.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35567788999999999999999 87543322100001 12355666667568899999999999999997644 3333 


Q ss_pred             hhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChh
Q 015537          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (405)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~  318 (405)
                      .....++|.++..+.+..+.|+..+..++..++...+.....-.-..+++.|...|.+.++.++..++.+|+.++.....
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            45677899999999988899999988888888754321100000002467888999999999999999999999965542


Q ss_pred             ---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          319 ---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       319 ---~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                         .....+...++|.|..++.++ ++.+|..|.-+++-++.
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence               222333357999999999999 99999999999999864

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.67  E-value=2.3e-09  Score=83.64  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=92.0

Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (405)
Q Consensus       115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (405)
                      ...++.++.+|++++ +.++..|+++|+++...            .++.|+.+|.++++.++..++++|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            445788899998887 89999999999876431            36899999999999999999999999852  1   


Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHh
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l  270 (405)
                            ..++.|+..+ .++++.++..++|+|..+..          ...++.|..+++++|+.++..++++|..+
T Consensus        73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  2467888888 67889999999999998863          35788899999988999999999988653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.54  E-value=3.9e-06  Score=77.85  Aligned_cols=234  Identities=15%  Similarity=0.141  Sum_probs=159.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC--ChHHHHHhhCC-----------------CCHHHHHHHH
Q 015537          120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLYS-----------------PSDDVREQAV  180 (405)
Q Consensus       120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g--~i~~L~~lL~~-----------------~~~~i~~~a~  180 (405)
                      .++..|+.......+.-++.+|..+... ++.|..+.+.+  .++.++.++..                 ....++.+++
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            4555566532246677899999999887 88898888653  36666544331                 1356789999


Q ss_pred             HHHHHhhCCChhhHHHHHhcCCh--HHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh----hh--hccHHHHHhhh
Q 015537          181 WALGNIAGDSPRCRDLVLSQGGL--VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD----QV--SPALPALAHLI  252 (405)
Q Consensus       181 ~~L~nl~~~~~~~~~~i~~~~~i--~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~----~~--~~~l~~L~~ll  252 (405)
                      .+++-++-+.+ ..+.+...+..  ..|+..+.....+.+.+.++.+|.|+....+.....    .+  .++++ ++..|
T Consensus       250 l~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L  327 (480)
T 1ho8_A          250 LLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSL  327 (480)
T ss_dssp             HHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHH
T ss_pred             HHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHH
Confidence            99999987665 44555555533  566677767778999999999999999875322111    11  33444 44444


Q ss_pred             cC---CChHHHHHHHHHHHHhcc---------------------CChhH---------HHHHHh--cCChHHHHHhcCC-
Q 015537          253 HS---NDDEVLTDACWALSYLSD---------------------GTNDK---------IQAVIE--AGVFPRLAEFLMH-  296 (405)
Q Consensus       253 ~~---~d~~v~~~a~~~l~~l~~---------------------~~~~~---------~~~~~~--~~~l~~L~~lL~~-  296 (405)
                      ..   +|+++..+.-.....|-.                     .++-+         +..+.+  ..++..|+.+|.+ 
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            32   577776664433222211                     11111         111111  1356788888963 


Q ss_pred             ---------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          297 ---------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       297 ---------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                               .++.+..-||.=||.++...+.....+-+.|+=+.++.++.++ ++.||.+|..++.-+..
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence                     3677888999999999999888888888889999999999999 99999999999987754

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.53  E-value=3.5e-05  Score=80.15  Aligned_cols=296  Identities=11%  Similarity=0.065  Sum_probs=165.1

Q ss_pred             CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHH-HHhcCCCCHHHHHHHHHHHHHHhcCC---c--hhHHHHHh
Q 015537           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT---S--EHTKVVID  157 (405)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li-~lL~~~~~~~~~~~a~~~L~ni~~~~---~--~~~~~~~~  157 (405)
                      ++++.+...++.++..+++.   -+...+++.++++.++ .+|.  + +.++..|+.||..+....   +  +....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            35677778888999988764   4577888899999999 8885  3 789999999999998732   2  11111111


Q ss_pred             C--CChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhCC-------ChhhHHHHHhcCChHHHHHhhhCCC
Q 015537          158 H--GAVPIF--------------VKLLYSPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQP  214 (405)
Q Consensus       158 ~--g~i~~L--------------~~lL~~~~~~i~~~a~~~L~nl~~~-------~~~~~~~i~~~~~i~~L~~~l~~~~  214 (405)
                      .  +.++.+              .......+.+..+..+..+..+...       .+..+..+.  .++..|+..- ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence            0  111111              1111223456666666666554421       121122211  1223344433 556


Q ss_pred             chhHHHHHHHHHHHhhcCC-C-CCChhhh----hccHHHHHhhhcCCC--------------------hH-HHHHHH-HH
Q 015537          215 KLSMLRNATWTLSNFCRGK-P-QPPFDQV----SPALPALAHLIHSND--------------------DE-VLTDAC-WA  266 (405)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~-~-~~~~~~~----~~~l~~L~~ll~~~d--------------------~~-v~~~a~-~~  266 (405)
                      +.++...++..++.|.+.- . .......    ..+++.++.-+..++                    ++ ..-... .+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            8888888888888787632 1 1122222    334444444443221                    00 000001 23


Q ss_pred             HHHhccCC-hhHHHHHHhcCChHHHHHhcCC--CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcC-----
Q 015537          267 LSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-----  338 (405)
Q Consensus       267 l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~-----  338 (405)
                      |.+++.-. ++..+.+     ++.+...+.+  .++..++.+++++|.|+.+.......-.-..+++.|+.++.+     
T Consensus       437 L~~l~~l~~~~~~~~~-----~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEEIM-----ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHHHH-----HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            33332211 1222222     2444444543  578999999999999997765432323333578888888864     


Q ss_pred             CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          339 NYKKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      + +..++..+||+||.++.   .+++....     ++..|+..|...     .+.|+..|+||+.++|.
T Consensus       512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~-----~~~v~~~A~~al~~l~~  569 (1023)
T 4hat_C          512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHET-----HEGVQDMACDTFIKIVQ  569 (1023)
T ss_dssp             H-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCS-----CHHHHHHHHHHHHHHHH
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcC-----CHHHHHHHHHHHHHHHH
Confidence            3 45677889999999875   23433222     222333333211     24799999999999984

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.53  E-value=2.1e-06  Score=79.64  Aligned_cols=233  Identities=13%  Similarity=0.149  Sum_probs=157.3

Q ss_pred             HHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhc--CcHHHHHHHhcC----------------CCCHHHHHHHH
Q 015537           78 MVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS--GVVPRFVEFLLR----------------EDYPQLQFEAA  138 (405)
Q Consensus        78 l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~--g~l~~Li~lL~~----------------~~~~~~~~~a~  138 (405)
                      ++..|.+ ++...+.-+++++..++..  .+....+.+.  +.+|.++.+++.                +...+++++++
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~--~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcc--hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            4444544 3455677788888888753  3444455543  246777655441                10257899999


Q ss_pred             HHHHHHhcCCchhHHHHHhCCCh--HHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-----hHHHHHhcCChHHHHHhh
Q 015537          139 WALTNIASGTSEHTKVVIDHGAV--PIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-----CRDLVLSQGGLVPLLAQL  210 (405)
Q Consensus       139 ~~L~ni~~~~~~~~~~~~~~g~i--~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~-----~~~~i~~~~~i~~L~~~l  210 (405)
                      .|+.-++.. ++....+...++.  +.|+.+++. ....+.+.++.+|.|+....+.     ..+.++..++ .+++..|
T Consensus       250 l~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L  327 (480)
T 1ho8_A          250 LLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL  327 (480)
T ss_dssp             HHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred             HHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence            999999998 5666667666643  566666664 5789999999999999976531     1223333333 5666666


Q ss_pred             hC--CCchhHHHHHHHHHHHhhc---------------------CCCCC-Chh-----------hhhccHHHHHhhhcC-
Q 015537          211 NG--QPKLSMLRNATWTLSNFCR---------------------GKPQP-PFD-----------QVSPALPALAHLIHS-  254 (405)
Q Consensus       211 ~~--~~~~~~~~~a~~~l~~l~~---------------------~~~~~-~~~-----------~~~~~l~~L~~ll~~-  254 (405)
                      ..  ..|+++....-+....|-.                     ..|.. ...           ....++..|+.+|.+ 
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            43  3466665554443322211                     11111 100           114577888999973 


Q ss_pred             ---------CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          255 ---------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       255 ---------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                               .|+.+..-||.-|+.++...+.....+-+.|+=..++.++.+++++|+..|+.+++.+..
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                     478899999999999999988888877778999999999999999999999999988764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.41  E-value=2.9e-05  Score=79.27  Aligned_cols=299  Identities=12%  Similarity=0.120  Sum_probs=210.5

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc---
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS---  149 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~---  149 (405)
                      ..+..+++.+...+......++..+..++.++ ...  ..+..+++..+.+.+.+.. ..  +.|+.++..++....   
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~   87 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGN-IIE--HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP   87 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSS-CSS--SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhcc-ccc--cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence            34566777777655666677888888876543 111  1222367888888887765 23  889999999995421   


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      ..--.++  +.+|.++..+.+....++..|-.++..++..-+...  +  ...++.|+..|.....-..+..++.++..|
T Consensus        88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~  161 (986)
T 2iw3_A           88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAM  161 (986)
T ss_dssp             TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            1222233  678999999888889999998888888875443321  1  336788999996566788999999999999


Q ss_pred             hcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccC--ChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (405)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  307 (405)
                      +...|......+..++|.+...+.+..++|...+..++..+|..  +.+. .     ..+|.|+..+.+++.  ...++.
T Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~-----~~~~~~~~~~~~p~~--~~~~~~  233 (986)
T 2iw3_A          162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-E-----RFIPSLIQCIADPTE--VPETVH  233 (986)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-G-----GGHHHHHHHHHCTTH--HHHHHH
T ss_pred             HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-h-----hhHHHHHHHhcChhh--hHHHHH
Confidence            98654333444578899999999999999999999998888752  2222 2     457899999987744  445667


Q ss_pred             HHhHhhcCCh--hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhccc
Q 015537          308 TVGNIVTGDD--MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQVIMHVHAFSIIVAFFFMFL  383 (405)
Q Consensus       308 ~l~nl~~~~~--~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~lL~~~~  383 (405)
                      .|+.-..-..  .-+-.+    ++|.|.+-|... ...+++.++-++.|||.  .+|..+...+ ..++|.+-.......
T Consensus       234 ~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~  307 (986)
T 2iw3_A          234 LLGATTFVAEVTPATLSI----MVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIA  307 (986)
T ss_dssp             HHTTCCCCSCCCHHHHHH----HHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCC
T ss_pred             HhhcCeeEeeecchhHHH----HHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccC
Confidence            7765543322  111112    467788888777 88999999999999997  6888766665 567788777776654


Q ss_pred             ccchhhhHHHHHHHHHhh
Q 015537          384 HFFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       384 ~~~~~~~vr~~A~~al~n  401 (405)
                      +    |++|.-|.-|+..
T Consensus       308 ~----pe~r~~~~~a~~~  321 (986)
T 2iw3_A          308 D----PEAREVTLRALKT  321 (986)
T ss_dssp             S----HHHHHHHHHHHHH
T ss_pred             C----HHHHHHHHHHHHH
Confidence            4    4899988877754

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.31  E-value=1.9e-05  Score=69.73  Aligned_cols=157  Identities=13%  Similarity=0.086  Sum_probs=127.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      ...+++.|++++......++..|..+++.+ ...+.+++..+++..|+......+ ...+..++.+|.++... ......
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~g  196 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-cccccc
Confidence            578889999999999999999999977754 788899999999999999999887 89999999999999887 555555


Q ss_pred             HHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--------cC--ChHHHHHhhh--CCCchhHHHH
Q 015537          155 VID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--------QG--GLVPLLAQLN--GQPKLSMLRN  221 (405)
Q Consensus       155 ~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--------~~--~i~~L~~~l~--~~~~~~~~~~  221 (405)
                      +++ ...|..+..++.+.+..|...|+..|..++..++.....+.+        .|  .+..|+.+|.  .+.|.+++.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            554 467899999999989999999999999998776544333332        11  3678888884  2668999999


Q ss_pred             HHHHHHHhhcCCC
Q 015537          222 ATWTLSNFCRGKP  234 (405)
Q Consensus       222 a~~~l~~l~~~~~  234 (405)
                      +...+..+..+-|
T Consensus       277 amtLIN~lL~~ap  289 (339)
T 3dad_A          277 TVTLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhcCC
Confidence            8888877766544

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.18  E-value=7.8e-05  Score=77.80  Aligned_cols=225  Identities=10%  Similarity=0.041  Sum_probs=124.7

Q ss_pred             CCChHHHHHHHHHHHHhhccCC--CCchHHH-HhcCcHHH----HHHHhcCC--CCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           84 SNDSGVQYECTTQFRKLLSIER--SPPIEEV-IRSGVVPR----FVEFLLRE--DYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~-~~~g~l~~----Li~lL~~~--~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      +.++..+..|+.++..++.+..  ....... ....+.+.    ++..|.++  ..+.+|..|+|+++.++..-+  .. 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~-  492 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA-  492 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH-
Confidence            4567788888998888864310  1010000 00022222    33344555  138999999999999987521  11 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhh-HHHHHh--cCChHHHHHhhhCCC----chhHHH
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-------PRC-RDLVLS--QGGLVPLLAQLNGQP----KLSMLR  220 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-------~~~-~~~i~~--~~~i~~L~~~l~~~~----~~~~~~  220 (405)
                      .. ..+++.++..|.++++.|+..|+++|.+++...       +.+ ++.+..  ...+..|+.++....    ......
T Consensus       493 ~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e  571 (960)
T 1wa5_C          493 QL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE  571 (960)
T ss_dssp             HH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred             HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence            22 246788888898888999999999999998631       111 122211  123445555664431    111234


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhccHHHHHhhhc----C-CChHHHHHHHHHHHHhccC-ChhHHHHHHhcCChHHHHHhc
Q 015537          221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----S-NDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL  294 (405)
Q Consensus       221 ~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~----~-~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~L~~lL  294 (405)
                      .+..++..++...+.........+++.|...+.    + +++.....++.+++.++.. .++... -+...++|.+...|
T Consensus       572 ~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL  650 (960)
T 1wa5_C          572 FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVF  650 (960)
T ss_dssp             HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHH
Confidence            555555555443222222333445555554442    2 3567777888888888765 222222 33345567777777


Q ss_pred             CCCCcchHHHHHHHHhHhh
Q 015537          295 MHPSPSVLIPALRTVGNIV  313 (405)
Q Consensus       295 ~~~~~~v~~~a~~~l~nl~  313 (405)
                      .....++...++.+++.+.
T Consensus       651 ~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          651 SEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HTTCTTTHHHHHHHHHHHH
T ss_pred             HhhhHhhHHHHHHHHHHHH
Confidence            6555555555666655544

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.17  E-value=3.3e-05  Score=80.23  Aligned_cols=303  Identities=11%  Similarity=0.025  Sum_probs=167.8

Q ss_pred             CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--hhHHHHHhCCCh
Q 015537           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--EHTKVVIDHGAV  161 (405)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~--~~~~~~~~~g~i  161 (405)
                      +.++.....++.++...++.   .+...++..++++.+..+|..   ++++..|+.||..+.....  +.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            46788889999999999863   456777888899999999864   7899999999999887543  222223322011


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCh-----hhHHHH--HhcCChHHHHHhhhCCCchhHHHHHHHHH
Q 015537          162 PIFVKLLY--SPSDDVREQAVWALGNIA------GDSP-----RCRDLV--LSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (405)
Q Consensus       162 ~~L~~lL~--~~~~~i~~~a~~~L~nl~------~~~~-----~~~~~i--~~~~~i~~L~~~l~~~~~~~~~~~a~~~l  226 (405)
                      ...+..+.  ..+.++.+..+..+..++      ...+     +.+...  .-.+.++.++.++ .+++.++...++..+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            11222222  356666554444443322      1111     111110  1124677777887 566667777666666


Q ss_pred             HHhhcCC---CC--CCh----hhhhccHHHHHhhhcCCC-----h-----------HHHHHHHHHHHH-hccCChhH-HH
Q 015537          227 SNFCRGK---PQ--PPF----DQVSPALPALAHLIHSND-----D-----------EVLTDACWALSY-LSDGTNDK-IQ  279 (405)
Q Consensus       227 ~~l~~~~---~~--~~~----~~~~~~l~~L~~ll~~~d-----~-----------~v~~~a~~~l~~-l~~~~~~~-~~  279 (405)
                      ..+....   +.  ...    .....+++.++.-+..++     .           +.|.... .+.. ++.-.++. ..
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~  435 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS  435 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence            6555321   11  111    222444454444443210     1           2344433 2222 22112221 11


Q ss_pred             HHHhcCChHHHHHhcC---CCCcchHHHHHHHHhHhhcCChhhHHHH-----HhcCchHHHHHhhc-----CCCchhHHH
Q 015537          280 AVIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVTGDDMQTQCV-----IEYQALPCLLNLLS-----GNYKKSIKK  346 (405)
Q Consensus       280 ~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~-----~~~g~l~~L~~ll~-----~~~~~~v~~  346 (405)
                      .+.+ -+.+.+...+.   +.++...+.++.+|+.++.+-......+     .-..+++.+..++.     .+ ++.|+.
T Consensus       436 ~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~  513 (980)
T 3ibv_A          436 YMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL  513 (980)
T ss_dssp             HHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence            1111 11223333342   3457889999999999987643211111     01124566666655     44 889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc--ccccchhhhHHHHHHHHHhhhc
Q 015537          347 EACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFM--FLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      .++|+++..+.--..      ....++.++..+-+  +-+.. ++.||..|++++.+||
T Consensus       514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~  565 (980)
T 3ibv_A          514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFV  565 (980)
T ss_dssp             HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHH
Confidence            999999999763211      23556677776655  33221 3479999999999998

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.04  E-value=0.00021  Score=74.74  Aligned_cols=252  Identities=8%  Similarity=0.067  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHH
Q 015537          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL  207 (405)
Q Consensus       133 ~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~  207 (405)
                      .|..+..+|..++...++..-.    -+++.+-..+.+     .+...++.++++++.++........     ..++.++
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~  507 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILE----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLM  507 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHH----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHH
Confidence            5566666777766543311111    112233333332     5778999999999999865442211     2233333


Q ss_pred             Hh---hh-CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHh
Q 015537          208 AQ---LN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  283 (405)
Q Consensus       208 ~~---l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  283 (405)
                      .+   +. .+.++.++..++|+++.++...... ......+++.++..+.   +.++..|++++.+++..........+ 
T Consensus       508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-  582 (971)
T 2x1g_F          508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-  582 (971)
T ss_dssp             HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred             HHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-
Confidence            33   32 1348899999999999999753221 2456778888888872   78999999999999965544332222 


Q ss_pred             cCChHHHHHhcCCC--CcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHH----HhhcCCC-chhHHHHHHHHHHHH
Q 015537          284 AGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLL----NLLSGNY-KKSIKKEACWTVSNI  355 (405)
Q Consensus       284 ~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~----~ll~~~~-~~~v~~~a~~~L~nl  355 (405)
                      ..++..+..++..+  +...+..++.+++.++..-+ ......++ .+++.++    .++.... ++..+.....++..+
T Consensus       583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L  661 (971)
T 2x1g_F          583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMI  661 (971)
T ss_dssp             HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence            24666777777663  56788889999999986421 22221221 2333333    3333331 223344555555555


Q ss_pred             hc-----CCH-----------HHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          356 TA-----GNR-----------EQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       356 ~~-----~~~-----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      +.     +..           +... -.-..++|.+..++....+   ++.+.+.|+++++.++
T Consensus       662 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~---~~~v~e~~~~~~~~~~  721 (971)
T 2x1g_F          662 STLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEMWVE---EIDVLEAACSAMKHAI  721 (971)
T ss_dssp             HHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHHTTT---CHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHH
Confidence            42     111           1111 1235788888888865432   2479999999998854

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.01  E-value=0.00026  Score=73.98  Aligned_cols=291  Identities=10%  Similarity=-0.021  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhc---------------CCCCHHHHHHHHHHHHHHhcCCc-hh
Q 015537           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---------------REDYPQLQFEAAWALTNIASGTS-EH  151 (405)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~---------------~~~~~~~~~~a~~~L~ni~~~~~-~~  151 (405)
                      .+...++.++..++.....+ ..  ....+++.+.. |.               ..+.++++..|+.+|..+....+ ..
T Consensus       204 ~~~~~al~~l~~~~~~~~ip-~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  279 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIGYT-IE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN  279 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSCCC-GG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred             hHHHHHHHHHHHHHhhCCcC-cc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence            67777888887766520012 22  33456676666 41               11237899999999999988532 11


Q ss_pred             HHHHHhCCChHHHHHh-------hCCCC---HHHHHHHHHHHHHhhCCChh-hHHHHH-----hc----CChHHHHHhhh
Q 015537          152 TKVVIDHGAVPIFVKL-------LYSPS---DDVREQAVWALGNIAGDSPR-CRDLVL-----SQ----GGLVPLLAQLN  211 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~l-------L~~~~---~~i~~~a~~~L~nl~~~~~~-~~~~i~-----~~----~~i~~L~~~l~  211 (405)
                      ....+. .+++.++.+       +...+   .+.....+..+..++..... +.+.+.     ..    ..++.++....
T Consensus       280 ~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~  358 (971)
T 2x1g_F          280 YPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTD  358 (971)
T ss_dssp             CHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHc
Confidence            111111 123333332       23334   26666666666666533221 110000     01    13344444432


Q ss_pred             C----CCchhHHHHHHHHHHHhhcCC--------CCCCh----hhhhccHHHHHhhhcCC-C-------h-------HHH
Q 015537          212 G----QPKLSMLRNATWTLSNFCRGK--------PQPPF----DQVSPALPALAHLIHSN-D-------D-------EVL  260 (405)
Q Consensus       212 ~----~~~~~~~~~a~~~l~~l~~~~--------~~~~~----~~~~~~l~~L~~ll~~~-d-------~-------~v~  260 (405)
                      .    ..+..+...+++++..+++..        .....    .....+++.++..+..+ +       +       ..+
T Consensus       359 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R  438 (971)
T 2x1g_F          359 KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR  438 (971)
T ss_dssp             CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred             CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence            2    347889999999998887621        11111    12244455555444322 1       1       244


Q ss_pred             HHHHHHHHHhccCCh-hHHHHHHhcCChHHHHHhcCC-----CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH
Q 015537          261 TDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (405)
Q Consensus       261 ~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~  334 (405)
                      ..+..++..++.... .....+     ++.+...+.+     .++..+..++.++|.++.+........+. .+++.+..
T Consensus       439 ~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~  512 (971)
T 2x1g_F          439 QDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAE  512 (971)
T ss_dssp             HHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHh
Confidence            555556655554332 222222     2333334432     57789999999999998765532211111 13333333


Q ss_pred             hhc-CCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          335 LLS-GNYKKSIKKEACWTVSNITAG---NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       335 ll~-~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      +.. +. ++.+|..++|+++.++..   +++..     ..+++.|+..|.        +.|+..|++|+.++|
T Consensus       513 l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l-----~~vl~~l~~~l~--------~~v~~~A~~al~~l~  571 (971)
T 2x1g_F          513 IPYEKL-NVKLLGTALETMGSYCNWLMENPAYI-----PPAINLLVRGLN--------SSMSAQATLGLKELC  571 (971)
T ss_dssp             SCTTTS-CHHHHHHHHHHHHHTHHHHC----CH-----HHHHHHHHHHHH--------SSCHHHHHHHHHHHH
T ss_pred             cCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHhC--------hHHHHHHHHHHHHHH
Confidence            322 34 789999999999999751   22211     134555555551        369999999999998

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.98  E-value=0.0023  Score=65.47  Aligned_cols=264  Identities=11%  Similarity=0.082  Sum_probs=178.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCC-CCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-chh
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-SEH  151 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~-~~~  151 (405)
                      .+..+.+.+......  ..|+..+..++.... .++.+. .--+.+|.++..+.+.. ..++..|..++..+...- ++.
T Consensus        55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a  130 (986)
T 2iw3_A           55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP-YIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA  130 (986)
T ss_dssp             HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH-HHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc-chHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence            355666666543222  778888888874331 223332 22257899999888777 789988888887776642 333


Q ss_pred             HHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537          152 TKVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~-~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  230 (405)
                      .     ..++|.|+..|.+. ....+..|+.++..++...+..-.. .-..++|.+...+ .+..+++...+..++..+|
T Consensus       131 ~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~  203 (986)
T 2iw3_A          131 I-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVAL-RMPELIPVLSETM-WDTKKEVKAAATAAMTKAT  203 (986)
T ss_dssp             H-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHH-HHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHG
T ss_pred             H-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHH-hccchhcchHhhc-ccCcHHHHHHHHHHHHHHH
Confidence            2     24588999988764 6899999999999999765432111 1123567777777 8889999999999999999


Q ss_pred             cCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (405)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~  310 (405)
                      .--.+.+.   .+.+|.|+..+.+++.  ...++..|+.-+.-..-....+  +=.+|.|..-|......+...++-++.
T Consensus       204 ~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~  276 (986)
T 2iw3_A          204 ETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIID  276 (986)
T ss_dssp             GGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             hcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEc
Confidence            86444433   5789999999977643  4455555554432221111100  012466666677778888999999999


Q ss_pred             HhhcC--ChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 015537          311 NIVTG--DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       311 nl~~~--~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      |+|.-  ++.... ..-..++|.+.+....-.+|++|+.+..++.-|.
T Consensus       277 n~~~lv~~~~~~~-~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          277 NMCKLVEDPQVIA-PFLGKLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHTTCCCHHHHH-HHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             chhhhcCCHHHHh-hhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            99963  333333 3345788888888887779999988888777773

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.97  E-value=0.00032  Score=61.99  Aligned_cols=178  Identities=12%  Similarity=0.089  Sum_probs=128.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i  197 (405)
                      +..+++-|.+++ ..-+..++.-|..+...+.+....+++.+++..|+.+....+.+.+..++.+|+++..+.......+
T Consensus       120 a~~iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv  198 (339)
T 3dad_A          120 VNAILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence            445666677666 7778999999999666668999999999999999999999999999999999999987644333333


Q ss_pred             HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhh-----------hccHHHHHhhhc---CCChHHHHHH
Q 015537          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-----------SPALPALAHLIH---SNDDEVLTDA  263 (405)
Q Consensus       198 ~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-----------~~~l~~L~~ll~---~~d~~v~~~a  263 (405)
                      -....+..+..++ .+.+..+.+.++..|..++...+.......           ...++.|+.+|+   ..|.+++.++
T Consensus       199 s~~~fI~~lyslv-~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          199 AHSDTIQWLYTLC-ASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence            3555788888888 468899999999999999887532211111           123567888897   6789999999


Q ss_pred             HHHHHHhccCCh--h----HHHHHHhcCChHHHHHhcCCC
Q 015537          264 CWALSYLSDGTN--D----KIQAVIEAGVFPRLAEFLMHP  297 (405)
Q Consensus       264 ~~~l~~l~~~~~--~----~~~~~~~~~~l~~L~~lL~~~  297 (405)
                      ...|..+..+.+  +    ....+-+.|+=..+...|+..
T Consensus       278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~  317 (339)
T 3dad_A          278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA  317 (339)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence            888877654433  2    122233334444555556543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.97  E-value=0.0017  Score=68.37  Aligned_cols=297  Identities=10%  Similarity=0.075  Sum_probs=158.9

Q ss_pred             CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCC--ch---hHHHHHh-
Q 015537           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAWALTNIASGT--SE---HTKVVID-  157 (405)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~-lL~~~~~~~~~~~a~~~L~ni~~~~--~~---~~~~~~~-  157 (405)
                      ++..++..++.++..+++.   .+...+.+..+++.+++ ++.  + +.++..|+.||..+....  +.   ....+.. 
T Consensus       207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            4567888888988888754   23455667778888884 443  4 899999999999998752  21   1111111 


Q ss_pred             -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CChhhHHHHHhcCChHHHHHhhhCCCc
Q 015537          158 -HGAVPIFVK-LL-------------YSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (405)
Q Consensus       158 -~g~i~~L~~-lL-------------~~~~~~i~~~a~~~L~nl~~-------~~~~~~~~i~~~~~i~~L~~~l~~~~~  215 (405)
                       .+++..+.. ++             .+.+.+.....+..+..+..       ..+..+..+  ..+++.++... ..++
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d  357 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence             122222211 11             12234444444444433321       111112211  12345555554 5568


Q ss_pred             hhHHHHHHHHHHHhhc----CCCC--CChhhhhccHHHHHhhhcCC-------------------Ch---HHHHHHHHHH
Q 015537          216 LSMLRNATWTLSNFCR----GKPQ--PPFDQVSPALPALAHLIHSN-------------------DD---EVLTDACWAL  267 (405)
Q Consensus       216 ~~~~~~a~~~l~~l~~----~~~~--~~~~~~~~~l~~L~~ll~~~-------------------d~---~v~~~a~~~l  267 (405)
                      .++...++..+..+++    ....  ........+++.++..+..+                   |.   .....+..+|
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            8888888888888877    3211  11123345555555544321                   11   1122344455


Q ss_pred             HHhccCChhHHHHHHhcCChHHHHHhcC--CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC----Cc
Q 015537          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YK  341 (405)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~----~~  341 (405)
                      ..++......+-.+    +.+.+-..+.  ..++..+..+++++|.++.+.........-..+++.|..+....    ++
T Consensus       438 ~~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~  513 (1049)
T 3m1i_C          438 VYLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK  513 (1049)
T ss_dssp             HHHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH
T ss_pred             HHHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch
Confidence            55543222211111    2344444454  35778899999999999864432211111123455555544321    14


Q ss_pred             hhHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          342 KSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       342 ~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      +.++..+||+++.++.   .+++...     .+++.|+..|.+.     ++.|+..|++++.++|-
T Consensus       514 ~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~-----~~~V~~~A~~al~~l~~  569 (1049)
T 3m1i_C          514 AVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHET-----HEGVQDMACDTFIKIVQ  569 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHH
Confidence            5566679999998864   2333222     3455566655432     35799999999999983

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.85  E-value=0.00044  Score=72.18  Aligned_cols=286  Identities=11%  Similarity=0.038  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc--hhHHHH---Hh--CCC
Q 015537           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--EHTKVV---ID--HGA  160 (405)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~--~~~~~~---~~--~g~  160 (405)
                      .+...++.++....... . ..  .....+++.+++++.  + ++++..|+.++..+.....  +....+   +.  .+.
T Consensus       217 ~~~~~~l~~l~~wi~~~-~-~~--~~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~  289 (963)
T 2x19_B          217 CVRQKVLKCFSSWVQLE-V-PL--QDCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGL  289 (963)
T ss_dssp             HHHHHHHHHHHHHHTSS-C-CG--GGTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCC-C-Cc--ccchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhh
Confidence            36666666665554321 1 11  122445777777774  3 6789999999999988532  111111   11  011


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH----h----cCChHHHHHhhhC----CCchhHHHHHHHHHHH
Q 015537          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL----S----QGGLVPLLAQLNG----QPKLSMLRNATWTLSN  228 (405)
Q Consensus       161 i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~----~----~~~i~~L~~~l~~----~~~~~~~~~a~~~l~~  228 (405)
                      .+.+...+...+.+.....+..+..++...+   ..+.    .    ...+..++.....    ..+..+...++..+..
T Consensus       290 ~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~  366 (963)
T 2x19_B          290 QEQLRQAVQNGDMETSHGICRIAVALGENHS---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYT  366 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHH
Confidence            2222222333455555555566665543211   1111    0    1233444444422    2355566666666666


Q ss_pred             hhcCCCCC-------Ch----hhhhccHHHHHhhhcCCCh---------------HHHHHHHHHHHHhccCCh-hHHHHH
Q 015537          229 FCRGKPQP-------PF----DQVSPALPALAHLIHSNDD---------------EVLTDACWALSYLSDGTN-DKIQAV  281 (405)
Q Consensus       229 l~~~~~~~-------~~----~~~~~~l~~L~~ll~~~d~---------------~v~~~a~~~l~~l~~~~~-~~~~~~  281 (405)
                      +++.....       ..    ..+..+++.++..+..++.               +.+..+..+|..++.... ....  
T Consensus       367 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~--  444 (963)
T 2x19_B          367 LQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLS--  444 (963)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH--
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHH--
Confidence            66521110       01    1123344444444432221               112333334444432111 1111  


Q ss_pred             HhcCChHHHHHhc----CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhh---cCCCchhHHHHHHHHHHH
Q 015537          282 IEAGVFPRLAEFL----MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       282 ~~~~~l~~L~~lL----~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll---~~~~~~~v~~~a~~~L~n  354 (405)
                         -+++.+...+    .+.++..+..+++++|.++.+.....     ...++.++..+   ..+ ++.++..++|+++.
T Consensus       445 ---~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~  515 (963)
T 2x19_B          445 ---NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGA  515 (963)
T ss_dssp             ---HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHH
Confidence               1223444444    55678889999999999997654211     12333333333   234 67899999999999


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          355 ITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      ++..-..+-+.  -..+++.|+..|.+       +.|+..|++++.++|
T Consensus       516 ~~~~l~~~~~~--l~~vl~~l~~~l~~-------~~V~~~A~~al~~l~  555 (963)
T 2x19_B          516 LSEWLADHPVM--INSVLPLVLHALGN-------PELSVSSVSTLKKIC  555 (963)
T ss_dssp             THHHHHHCHHH--HTTTHHHHHHHTTC-------GGGHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHH--HHHHHHHHHHHhCC-------chHHHHHHHHHHHHH
Confidence            97521111122  24778888887743       379999999999998

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.84  E-value=0.00078  Score=70.25  Aligned_cols=221  Identities=12%  Similarity=0.074  Sum_probs=126.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC-----CChH----HHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhH
Q 015537          127 REDYPQLQFEAAWALTNIASGTSEHTKVVIDH-----GAVP----IFVKLLYSP---SDDVREQAVWALGNIAGDSPRCR  194 (405)
Q Consensus       127 ~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~-----g~i~----~L~~lL~~~---~~~i~~~a~~~L~nl~~~~~~~~  194 (405)
                      +.+ ...+..|+.+++.++.+...... ....     ...+    .++..|.++   ++.++..++|+++.++..-+  .
T Consensus       416 ~~~-w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~  491 (960)
T 1wa5_C          416 SKN-WKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--K  491 (960)
T ss_dssp             --C-HHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--H
T ss_pred             chh-HHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--H
Confidence            344 68899999999999864211100 0000     1222    233344555   89999999999999986532  1


Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC-------CC----ChhhhhccHHHHHhhhcCCC---h--H
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-------QP----PFDQVSPALPALAHLIHSND---D--E  258 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-------~~----~~~~~~~~l~~L~~ll~~~d---~--~  258 (405)
                      +.  -..+++.+++.| .+++..++..|+++|.+++....       ..    -......+++.|..++....   +  .
T Consensus       492 ~~--l~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~  568 (960)
T 1wa5_C          492 AQ--LIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA  568 (960)
T ss_dssp             HH--HHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred             HH--HHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence            11  122567778887 66789999999999999997421       11    11223556666667776641   1  1


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc----CC-CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 015537          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL----MH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL  333 (405)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~  333 (405)
                      ....++.++..++....+....... .+++.++..+    .+ .++.....++.+|+.++.........-+...++|.+.
T Consensus       569 ~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~  647 (960)
T 1wa5_C          569 ENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFL  647 (960)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            2234445555443221111110110 1234444443    22 3445666789999998876332222234446788888


Q ss_pred             HhhcCCCchhHHHHHHHHHHHHh
Q 015537          334 NLLSGNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       334 ~ll~~~~~~~v~~~a~~~L~nl~  356 (405)
                      .++... ......++.-+++.+.
T Consensus       648 ~iL~~~-~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          648 TVFSED-IQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHTT-CTTTHHHHHHHHHHHH
T ss_pred             HHHHhh-hHhhHHHHHHHHHHHH
Confidence            888776 5666767666666664

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.00049  Score=60.65  Aligned_cols=191  Identities=11%  Similarity=0.084  Sum_probs=127.1

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCch-HHHH--hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~--~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~  149 (405)
                      ..+| +-+.|.|.++..+.+|+..+.+++........ +...  -....+.+...+.+.+ ..++..++.++..++....
T Consensus        10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~   87 (278)
T 4ffb_C           10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA   87 (278)
T ss_dssp             -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred             hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence            3456 66889999999999999999998764311111 1111  1234566677887777 8999999999998876321


Q ss_pred             h-----hHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHH
Q 015537          150 E-----HTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (405)
Q Consensus       150 ~-----~~~~~~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~  223 (405)
                      .     ......-..++|.|+. .|.+..+.++..+..++..++...... ..     .++.++..+ .+.++.++..++
T Consensus        88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l  160 (278)
T 4ffb_C           88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA  160 (278)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence            1     1111122246777775 578888999999999888876432211 11     234555666 788999999888


Q ss_pred             HHHHHhhcCCCC--CC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537          224 WTLSNFCRGKPQ--PP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (405)
Q Consensus       224 ~~l~~l~~~~~~--~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (405)
                      ..|..+......  .. ...+..+++.+..++.+.|+.|+..|..++..+-.
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            888887664321  11 22334566778888999999999999999887653

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.67  E-value=0.025  Score=59.02  Aligned_cols=293  Identities=12%  Similarity=0.100  Sum_probs=157.3

Q ss_pred             CCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHH-HHHhcCCCCHHHHHHHHHHHHHHhcCCc-hhHHHHHh--CC
Q 015537           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF-VEFLLREDYPQLQFEAAWALTNIASGTS-EHTKVVID--HG  159 (405)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~L-i~lL~~~~~~~~~~~a~~~L~ni~~~~~-~~~~~~~~--~g  159 (405)
                      ++++.+...++.++..+++.   -++..+++.++++.+ ..+|.  + +.++..|+.||..|.+... +....+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            45677778888999999865   356788889999988 46663  3 7899999999999887532 22222211  01


Q ss_pred             ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-C-------ChHHHHHhhhCCCchhH
Q 015537          160 AVPIFVKLL-------------YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-G-------GLVPLLAQLNGQPKLSM  218 (405)
Q Consensus       160 ~i~~L~~lL-------------~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~-~-------~i~~L~~~l~~~~~~~~  218 (405)
                      .+..+-.++             ...+++.....+..+..+...   ....+... +       ++..++.+- ..++.++
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei  367 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI  367 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence            122222222             112334444455555544321   11111111 1       223334333 5678888


Q ss_pred             HHHHHHHHHHhhcC----CC-----CC------------ChhhhhccHHH----HHhhhcCCC-----------------
Q 015537          219 LRNATWTLSNFCRG----KP-----QP------------PFDQVSPALPA----LAHLIHSND-----------------  256 (405)
Q Consensus       219 ~~~a~~~l~~l~~~----~~-----~~------------~~~~~~~~l~~----L~~ll~~~d-----------------  256 (405)
                      .+.+...+..|...    .+     .+            ......+++..    ++.-+..++                 
T Consensus       368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~  447 (1073)
T 3gjx_A          368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM  447 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence            88888777766542    11     00            01112333333    333332111                 


Q ss_pred             ---h-----HHHHHHHHHHHHhccCC-hhHHHHHHhcCChHHHHHhcCC--CCcchHHHHHHHHhHhhcCChhhHHHHHh
Q 015537          257 ---D-----EVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (405)
Q Consensus       257 ---~-----~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~  325 (405)
                         .     ++..+++   .+++.-. .+....     .++.+...+..  .++.....++|++|.|+..-....+.-.=
T Consensus       448 ~d~~~~~ly~~mrd~L---~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L  519 (1073)
T 3gjx_A          448 KDTDSINLYKNMRETL---VYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL  519 (1073)
T ss_dssp             SSCHHHHHHHHHHHHH---HHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHH---HHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH
Confidence               0     1222333   3333212 222222     23444444443  45788999999999998433322221122


Q ss_pred             cCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHH
Q 015537          326 YQALPCLLNLLSGNY----KKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWL  398 (405)
Q Consensus       326 ~g~l~~L~~ll~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~a  398 (405)
                      ..+++.|+.+..+..    ...++..+||++|..+.   .+++....     ++..|++.+...     ++.|+..|+-|
T Consensus       520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~-----~~~vq~aA~~a  589 (1073)
T 3gjx_A          520 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHET-----HDGVQDMACDT  589 (1073)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCC-----STTHHHHHHHH
T ss_pred             HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcC-----CHHHHHHHHHH
Confidence            246777777775541    23466778899999875   34443332     334455544332     34799999999


Q ss_pred             Hhhhcc
Q 015537          399 CLVTCC  404 (405)
Q Consensus       399 l~n~~~  404 (405)
                      +..+|.
T Consensus       590 f~~i~~  595 (1073)
T 3gjx_A          590 FIKIAQ  595 (1073)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999884

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.65  E-value=0.00019  Score=67.30  Aligned_cols=248  Identities=17%  Similarity=0.129  Sum_probs=158.4

Q ss_pred             hhhcCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCc-hHHHHhcCcHHHHHHHhcC---C------CCHHHHHHHHH
Q 015537           70 KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP-IEEVIRSGVVPRFVEFLLR---E------DYPQLQFEAAW  139 (405)
Q Consensus        70 ~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~-~~~~~~~g~l~~Li~lL~~---~------~~~~~~~~a~~  139 (405)
                      +..+-...|+..|-++.+++++-|+..||.++....... ...-....+.-.|+.+|--   +      --..+|+.|+.
T Consensus       171 WPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ  250 (800)
T 3oc3_A          171 NVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY  250 (800)
T ss_dssp             SGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHH
Confidence            344456888889999999999999999999986541100 0000111344444444321   1      12579999999


Q ss_pred             HHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHH
Q 015537          140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML  219 (405)
Q Consensus       140 ~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~  219 (405)
                      +|+.+ ..-+..      ..++..++..+..+..+++..++-.|..+.   +-. ..  -.++++.++.-| .+.|.+|+
T Consensus       251 tLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL-~~--Ld~Vv~aVL~GL-~D~DDDVR  316 (800)
T 3oc3_A          251 LLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFV-ED--KDGLCRKLVSLL-SSPDEDIK  316 (800)
T ss_dssp             HHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGC-CC--HHHHHHHHHHHT-TCSSHHHH
T ss_pred             HHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHH-HH--HHHHHHHHHhhc-CCcccHHH
Confidence            99999 654443      344555555557788999999999999881   111 11  133566677777 77899999


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCC--hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCC
Q 015537          220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP  297 (405)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  297 (405)
                      ..|+.+|.-++  .+    .....++..+...|.+.|  ..........|+.|+..+...   ......+|+|.++|.|.
T Consensus       317 AVAAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt  387 (800)
T 3oc3_A          317 LLSAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP  387 (800)
T ss_dssp             HHHHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS
T ss_pred             HHHHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC
Confidence            99999999988  12    234566667777665533  223344455566655443211   11237899999999999


Q ss_pred             CcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHH-HHhhcCCCchhHHHHHHHHH
Q 015537          298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL-LNLLSGNYKKSIKKEACWTV  352 (405)
Q Consensus       298 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L-~~ll~~~~~~~v~~~a~~~L  352 (405)
                      -.+||.++++++..+.  ...         ++..+ ..+|-.. ++.+++.+.-+.
T Consensus       388 ITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW  431 (800)
T 3oc3_A          388 VPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL  431 (800)
T ss_dssp             SHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            9999999999998887  111         22222 2333344 677777665544

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.52  E-value=0.0029  Score=55.87  Aligned_cols=224  Identities=14%  Similarity=0.156  Sum_probs=153.7

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR----CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~----~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      .+...+.+..|+..|..-+-+.+..+..++.++......    ..+.+..  -.+.+..++....++++.-.+-..|..+
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            344557888899988888888999999999998865432    2223322  2333444443445677777777777777


Q ss_pred             hcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhcCCCCcchHHHHH
Q 015537          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPAL  306 (405)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~a~  306 (405)
                      .++..-.......+.+-.+...++.++-+|..+|..++..+.......+...+..   .++.....+|.+++.-.+..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            7664322222334555567778888999999999999998876655544445444   3466778899999999999999


Q ss_pred             HHHhHhhcCCh--h-hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHH--hCcHHHHHHH
Q 015537          307 RTVGNIVTGDD--M-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQVIMH--VHAFSIIVAF  378 (405)
Q Consensus       307 ~~l~nl~~~~~--~-~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~--~~~i~~L~~l  378 (405)
                      ..||.+.....  . -+.++-+..-+..++.+|.+. +..++-+|..++--+.++   +++....++.  ..++..|-+.
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f  309 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF  309 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence            99999996432  2 233444556899999999999 999999999999888873   5554444442  4444444444


Q ss_pred             Hh
Q 015537          379 FF  380 (405)
Q Consensus       379 L~  380 (405)
                      ..
T Consensus       310 ~~  311 (341)
T 1upk_A          310 QN  311 (341)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.45  E-value=0.0002  Score=74.51  Aligned_cols=143  Identities=10%  Similarity=0.013  Sum_probs=89.4

Q ss_pred             CHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH
Q 015537          130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV  204 (405)
Q Consensus       130 ~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~  204 (405)
                      +...++.++|+++.|+.+-.+....-.-..+++.|+.++..     +...++..++|++|.++.--... ...+. ..+.
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~-~vl~  543 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLR-TVIL  543 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHH-HHHH
Confidence            38999999999999998754432222222577888888863     33446667889999876321100 01111 1233


Q ss_pred             HHHHhhhCCCchhHHHHHHHHHHHhhcCCCC--------CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh
Q 015537          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (405)
Q Consensus       205 ~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--------~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (405)
                      .|+..+ ..+++.+...|+|++.+||.....        ........++..+...+..-++.-...+..+++.+....+
T Consensus       544 ~L~~~l-~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          544 KLFEFM-HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHHHHT-TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHh-hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            344444 556788999999999999985321        1112334455555555555567777888888888876543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.43  E-value=0.0044  Score=64.58  Aligned_cols=219  Identities=14%  Similarity=0.145  Sum_probs=127.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 015537          126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG  202 (405)
Q Consensus       126 ~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~  202 (405)
                      .+.+ ...++.++++++.++.+-.+..     ...++.++..+   .++++.++..++|+++.++..-.... ..+ ..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHH
Confidence            3444 7889999999999998744311     12334444433   33578899999999999884321111 222 347


Q ss_pred             hHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC--ChHHHHHHHHHHHHhccCCh-hHHH
Q 015537          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ  279 (405)
Q Consensus       203 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~-~~~~  279 (405)
                      ++.++..| .+  +.++..|++++.++|+..+..-......+++.+..++...  +...+..+..+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            77888877 33  7899999999999997643222233456666667777653  57788888999999876443 3222


Q ss_pred             HHHhcCChHHHHHhc----CCC-CcchHH---HHHHHHhHhhcCCh---h------------------hHHHHHhcCchH
Q 015537          280 AVIEAGVFPRLAEFL----MHP-SPSVLI---PALRTVGNIVTGDD---M------------------QTQCVIEYQALP  330 (405)
Q Consensus       280 ~~~~~~~l~~L~~lL----~~~-~~~v~~---~a~~~l~nl~~~~~---~------------------~~~~~~~~g~l~  330 (405)
                      ..++ .+++.+...+    ..+ +++.+.   ..+.+|+.+..+-.   .                  ..-..+...+++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            2221 2344444433    222 333332   44555555443210   0                  001112223556


Q ss_pred             HHHHhhcCC-CchhHHHHHHHHHHHHh
Q 015537          331 CLLNLLSGN-YKKSIKKEACWTVSNIT  356 (405)
Q Consensus       331 ~L~~ll~~~-~~~~v~~~a~~~L~nl~  356 (405)
                      .+..++... .++.+.+.+|.+++.++
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~  713 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSV  713 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHH
Confidence            665555421 25677888887777764

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.43  E-value=0.062  Score=56.50  Aligned_cols=320  Identities=10%  Similarity=0.076  Sum_probs=162.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcc----CCC-Cch-------HHHHh--cCcHHHHHHHhcCCCCHHHHHHHHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSI----ERS-PPI-------EEVIR--SGVVPRFVEFLLREDYPQLQFEAAW  139 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~----~~~-~~~-------~~~~~--~g~l~~Li~lL~~~~~~~~~~~a~~  139 (405)
                      -++.+++.++ .++.....++..|..+...    ... ...       +.+..  ..+++.+..++....++.++..++.
T Consensus       139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~  217 (1049)
T 3m1i_C          139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE  217 (1049)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4788888886 4555555555555555311    000 000       11221  1234455566655444789999999


Q ss_pred             HHHHHhcCCchhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC--hh---hHHHHHh--cCChHHHHH---
Q 015537          140 ALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDS--PR---CRDLVLS--QGGLVPLLA---  208 (405)
Q Consensus       140 ~L~ni~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~--~~---~~~~i~~--~~~i~~L~~---  208 (405)
                      ++.+...--+  ...+.+...++.++ .++.  ++.++..++.+|..+....  +.   ....+..  .+.+..+..   
T Consensus       218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~  293 (1049)
T 3m1i_C          218 SLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM  293 (1049)
T ss_dssp             HHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhCC--HHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhC
Confidence            9988766322  23355667777777 3443  7899999999999998552  21   1111111  111221111   


Q ss_pred             --------hh--hCCCchhHHHHHHHHHHHhhcCC------CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 015537          209 --------QL--NGQPKLSMLRNATWTLSNFCRGK------PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (405)
Q Consensus       209 --------~l--~~~~~~~~~~~a~~~l~~l~~~~------~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (405)
                              .+  ..+.+.+.....+..+..+....      +......+..+++.++.....+|.++...++.....++.
T Consensus       294 p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~  373 (1049)
T 3m1i_C          294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA  373 (1049)
T ss_dssp             CTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                    11  12335555556666665443211      111122335567777777777788888888766666654


Q ss_pred             ----C--ChhHHHHHHhcCChHHHHHhcCCCCc----------------------chHHHHHHHHhHhhcCChhhHHHHH
Q 015537          273 ----G--TNDKIQAVIEAGVFPRLAEFLMHPSP----------------------SVLIPALRTVGNIVTGDDMQTQCVI  324 (405)
Q Consensus       273 ----~--~~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~v~~~a~~~l~nl~~~~~~~~~~~~  324 (405)
                          .  .......++ ..+++.++..+..++.                      ..+..+..+|..++.-.....-.  
T Consensus       374 ~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~--  450 (1049)
T 3m1i_C          374 DLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE--  450 (1049)
T ss_dssp             HHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred             HHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHH--
Confidence                1  111112111 1234455555432210                      11223444555554322211111  


Q ss_pred             hcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          325 EYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       325 ~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                        -+++.+...+.+ ..+++.++.++|+++.++.+.......-.-..+++.|..+.........++.++..++|+++.+|
T Consensus       451 --~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~  528 (1049)
T 3m1i_C          451 --IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYP  528 (1049)
T ss_dssp             --HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCH
T ss_pred             --HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence              124445555543 23788999999999999764322211111122444444432211101124567768999999775

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.0063  Score=53.43  Aligned_cols=189  Identities=12%  Similarity=0.139  Sum_probs=125.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH--HHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT--KVVID--HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP--  191 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~--~~~~~--~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~--  191 (405)
                      +| |-+-|.+.+ ...|.+|+..|..+....+...  .....  ....+.+-..+.+.+..++..++.++..++....  
T Consensus        12 lp-l~e~l~sk~-WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           12 LP-LEERLTYKL-WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             CC-HHHHTTCSS-HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred             CC-HHHhcccCc-HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            44 556777888 8999999999988776533221  11111  1345667778889999999999999998874321  


Q ss_pred             ---hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHH
Q 015537          192 ---RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS  268 (405)
Q Consensus       192 ---~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~  268 (405)
                         .......-..+++.|+.....+....++..+..++..++.....     ...+++.+...+.+.++.++..++..|.
T Consensus        90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence               11111112235666776522677888888888888887765311     1234677788889999999999999888


Q ss_pred             HhccC--Chh-HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          269 YLSDG--TND-KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       269 ~l~~~--~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      .+...  ... .....+ ..+++.+..+|.+.++.||..|..+++.+..
T Consensus       165 ~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          165 ELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            87532  111 111111 1345678888999999999999999988864

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.27  E-value=0.0076  Score=52.00  Aligned_cols=199  Identities=14%  Similarity=0.051  Sum_probs=123.2

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh---hCCCchhHHHHHHHHHHHhh----cCCCC
Q 015537          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---NGQPKLSMLRNATWTLSNFC----RGKPQ  235 (405)
Q Consensus       163 ~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l---~~~~~~~~~~~a~~~l~~l~----~~~~~  235 (405)
                      .+...|.+.+..-+..++..|.......+   +.+..  .++.+++-+   ..+++..+...++.+|..+.    .....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34445555555555556665555443332   12111  222232221   14567777777777777663    32222


Q ss_pred             CChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcC
Q 015537          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (405)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~  315 (405)
                      ........++|.|+.-+-++.+.++..+-.++..+..-.+.       ..+++.++.-+.+.++..+..++..++.+...
T Consensus       125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            22233467889999988888888988887777665431111       12457788888999999999999999998853


Q ss_pred             ChhhHHHHHhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 015537          316 DDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFF  380 (405)
Q Consensus       316 ~~~~~~~~~~~g~l---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~  380 (405)
                      ....     ....+   +.+..++.+. +..||..|.-++.-+.....+.+...+ .++-+.-.+++.
T Consensus       198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~Gd~v~k~l-g~L~~~~~~~l~  258 (266)
T 2of3_A          198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFEGDQMWKAA-GRMADKDKSLVE  258 (266)
T ss_dssp             HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHHTTHHHHHH-CCCCHHHHHHHH
T ss_pred             cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHH-hcCCHHHHHHHH
Confidence            2211     13468   9999999999 999999999999977653223233333 234455555543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.19  E-value=0.028  Score=49.62  Aligned_cols=242  Identities=12%  Similarity=0.115  Sum_probs=163.8

Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH----HHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHH
Q 015537          110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT----KVVID-HGAVPIFVKLLYSPSDDVREQAVWALG  184 (405)
Q Consensus       110 ~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~----~~~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~  184 (405)
                      +++...+++..|+..|..=+ -+.+..++.++.++.......+    ..+.. ..++..|+..-.  ++++.-.+-..|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHH
Confidence            34566788999999998877 7889999999999988654322    22332 133344444333  5555556666666


Q ss_pred             HhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhh----hccHHHHHhhhcCCChHHH
Q 015537          185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALAHLIHSNDDEVL  260 (405)
Q Consensus       185 nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~----~~~l~~L~~ll~~~d~~v~  260 (405)
                      ..+.+.. ....++..+.+-.+.+.+ ..++-++...|..++..+-..+........    .........++.+++--++
T Consensus       149 ecir~e~-la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk  226 (341)
T 1upk_A          149 ECIRHEP-LAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  226 (341)
T ss_dssp             HHHTSHH-HHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHhHH-HHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence            6665554 556666777777888888 788999999999999887665432222222    4566677789999999999


Q ss_pred             HHHHHHHHHhccCCh---hHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh---hhHHHHHh--cCchHHH
Q 015537          261 TDACWALSYLSDGTN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD---MQTQCVIE--YQALPCL  332 (405)
Q Consensus       261 ~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~~~--~g~l~~L  332 (405)
                      ..++..|+.+.....   -...++-+..-+..++.+|++.+..++..|..++--+++...   .....++.  ..++..|
T Consensus       227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl  306 (341)
T 1upk_A          227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFL  306 (341)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHH
Confidence            999999999875422   233344444668899999999999999999999888876543   22332332  2366666


Q ss_pred             HHhhcCC-CchhHHHHHHHHHHHHh
Q 015537          333 LNLLSGN-YKKSIKKEACWTVSNIT  356 (405)
Q Consensus       333 ~~ll~~~-~~~~v~~~a~~~L~nl~  356 (405)
                      ..+..+. .|.....+=.+.+..|.
T Consensus       307 ~~f~~d~~eDeqF~dEK~~lI~~I~  331 (341)
T 1upk_A          307 SKFQNDRTEDEQFNDEKTYLVKQIR  331 (341)
T ss_dssp             HHTTTTC-CCSHHHHHHHHHHHHHH
T ss_pred             HhCCCCCcchhhHHHHHHHHHHHHH
Confidence            6666654 35666666555555553

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.17  E-value=0.015  Score=60.37  Aligned_cols=255  Identities=12%  Similarity=0.061  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHH-hCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVI-DHG----AVPIFVKLLY-----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~-~~g----~i~~L~~lL~-----~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~  200 (405)
                      ....+.++.+|+.++.+-......+. ...    +++.+..++.     .+++.++..++|+++..+..-..      ..
T Consensus       457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~  530 (980)
T 3ibv_A          457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES  530 (980)
T ss_dssp             HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred             HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence            67789999999999887443221110 011    3455555554     57899999999999998754221      23


Q ss_pred             CChHHHHHhhhC-----CCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC-----CCh-------------
Q 015537          201 GGLVPLLAQLNG-----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-----NDD-------------  257 (405)
Q Consensus       201 ~~i~~L~~~l~~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----~d~-------------  257 (405)
                      ..+++++..+..     +++..++..++.++.++|+.....-......++..+..++..     .+.             
T Consensus       531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~  610 (980)
T 3ibv_A          531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN  610 (980)
T ss_dssp             TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred             hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence            456777776644     467889999999999999976443333445566666555542     111             


Q ss_pred             ---HHHHHHHHHHHHhccC---ChhHHHHHHhcCChHHHHH----hcCCC----Ccc-hHHHHHHHHhHhhcCChh----
Q 015537          258 ---EVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAE----FLMHP----SPS-VLIPALRTVGNIVTGDDM----  318 (405)
Q Consensus       258 ---~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~L~~----lL~~~----~~~-v~~~a~~~l~nl~~~~~~----  318 (405)
                         +-+.....+++.+...   +.+.....++ .+++.++.    .+...    +.. .....+.++|+++.+-+.    
T Consensus       611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~  689 (980)
T 3ibv_A          611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE  689 (980)
T ss_dssp             TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred             CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence               1244455566665522   2332222222 23333333    33222    111 122467778888865421    


Q ss_pred             ---hHHHHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHH
Q 015537          319 ---QTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKL  394 (405)
Q Consensus       319 ---~~~~~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~  394 (405)
                         ....+  ..+.+.+...+.. +.+..|+..++.++..+...-...+     ...+|.++..|-..-+.    .=-..
T Consensus       690 ~~p~~~~f--~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~-----~p~lp~~i~~ll~~~~~----~e~~~  758 (980)
T 3ibv_A          690 EVAWLASF--NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM-----LPKVPQLISILLNSIDM----NELVD  758 (980)
T ss_dssp             CCSHHHHH--HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH-----TTTHHHHHHHHHHHCCT----TTHHH
T ss_pred             CCcHHHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH-----HHHHHHHHHHHHhcCCH----HHHHH
Confidence               11111  1345566566652 2278999999999999987544432     46677777766532111    22345


Q ss_pred             HHHHHhhhc
Q 015537          395 AIWLCLVTC  403 (405)
Q Consensus       395 A~~al~n~~  403 (405)
                      ..|.++.++
T Consensus       759 fL~l~~qli  767 (980)
T 3ibv_A          759 VLSFISQLI  767 (980)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            556665543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.16  E-value=0.003  Score=59.48  Aligned_cols=215  Identities=13%  Similarity=0.075  Sum_probs=140.6

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC--CChHHHHHhhC-C------C---CHHHHHHHHHHHH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLY-S------P---SDDVREQAVWALG  184 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~--g~i~~L~~lL~-~------~---~~~i~~~a~~~L~  184 (405)
                      +...|+.-|-++. .++|.-|+.+|..+..............  .+.-.|+.+|. +      +   -..||+.|+.+||
T Consensus       175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            4556666666677 8999999999999876321100000111  22222222221 1      1   2468999999999


Q ss_pred             HhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHH
Q 015537          185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC  264 (405)
Q Consensus       185 nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~  264 (405)
                      .+ ..-+.-      ..++..++..+ ..+.-+++.-++-.|.++..--.     ...++++.++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence            99 654432      33455555444 56678899999999998811111     1578889999999999999999999


Q ss_pred             HHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCc--chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCch
Q 015537          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK  342 (405)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~  342 (405)
                      .+|.-++  .++....     ++..+.+.|.+-++  ......+..|+.+++.+...   -.+...+|.|..++.++ -+
T Consensus       321 etLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence            9999988  3333332     34556666644322  23445667777777655321   12347899999999999 99


Q ss_pred             hHHHHHHHHHHHHh
Q 015537          343 SIKKEACWTVSNIT  356 (405)
Q Consensus       343 ~v~~~a~~~L~nl~  356 (405)
                      .||+.+..+|..+.
T Consensus       390 SVR~AVL~TL~tfL  403 (800)
T 3oc3_A          390 EVRTSILNMVKNLS  403 (800)
T ss_dssp             HHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998876

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.13  E-value=0.0099  Score=51.26  Aligned_cols=179  Identities=11%  Similarity=0.054  Sum_probs=114.4

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh----CCChhhHHH
Q 015537          121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA----GDSPRCRDL  196 (405)
Q Consensus       121 Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~----~~~~~~~~~  196 (405)
                      +...|-+.+ ..-+..|+..|......+++.....++ .+++.+.--+.++++.+...++.+|..+.    ..+....+.
T Consensus        51 ~~~~lfs~d-~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           51 LMSQLFHKD-FKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHTCSC-HHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHhcCCC-HHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            333344444 566666666666654433322211111 12333333334678888888888888764    211111111


Q ss_pred             HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (405)
Q Consensus       197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (405)
                      -. .-.+|.|+..+ .+....++..+-.++..++.-.      -...+++.+...+++.+..++..++..+.++.....-
T Consensus       129 ea-~~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~  200 (266)
T 2of3_A          129 EV-SAFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI  200 (266)
T ss_dssp             HH-HHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HH-HHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence            11 12578888888 7777778877777776666421      1245778888888999999999999999998643221


Q ss_pred             HHHHHHhcCCh---HHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          277 KIQAVIEAGVF---PRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       277 ~~~~~~~~~~l---~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      .     ....+   +.+..++.+.+..||..|+.++..+-.
T Consensus       201 ~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          201 S-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             G-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             C-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            1     23568   999999999999999999999986654

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.07  E-value=0.00055  Score=58.68  Aligned_cols=66  Identities=18%  Similarity=0.167  Sum_probs=38.7

Q ss_pred             HhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCc
Q 015537          249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (405)
Q Consensus       249 ~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~  328 (405)
                      ..+++++++.|+..++..+                  ..+.|..++.++++.|+..+...++                  
T Consensus       176 ~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------------  219 (244)
T 1lrv_A          176 GLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS------------------  219 (244)
T ss_dssp             GGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC------------------
T ss_pred             HHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC------------------
Confidence            3455556666666665431                  1245666677777777777766653                  


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHH
Q 015537          329 LPCLLNLLSGNYKKSIKKEACWTV  352 (405)
Q Consensus       329 l~~L~~ll~~~~~~~v~~~a~~~L  352 (405)
                      .+.|..+ .++ ++.||..+.-.|
T Consensus       220 ~~~L~~L-~D~-~~~VR~aa~~~L  241 (244)
T 1lrv_A          220 LEALREL-DEP-DPEVRLAIAGRL  241 (244)
T ss_dssp             HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred             HHHHHHc-cCC-CHHHHHHHHHHh
Confidence            2344444 665 778877775433

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.94  E-value=0.001  Score=56.94  Aligned_cols=165  Identities=15%  Similarity=0.078  Sum_probs=101.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 015537          120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (405)
Q Consensus       120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~  199 (405)
                      .|..++++++ +.++..++..|                  ..+.|..++.++++.|+..++..+   .            
T Consensus        78 ~l~~L~~D~~-~~VR~~aA~~L------------------~~~~L~~ll~D~d~~VR~~aA~~l---~------------  123 (244)
T 1lrv_A           78 ALTPLIRDSD-EVVRRAVAYRL------------------PREQLSALMFDEDREVRITVADRL---P------------  123 (244)
T ss_dssp             GGGGGTTCSS-HHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHHHS---C------------
T ss_pred             HHHHHccCcC-HHHHHHHHHHC------------------CHHHHHHHHcCCCHHHHHHHHHhC---C------------
Confidence            3444555555 67777766432                  124566677777888887766632   1            


Q ss_pred             cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 015537          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ  279 (405)
Q Consensus       200 ~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~  279 (405)
                         ...+..++ ++++..|+..++..+       +          .+.+..+++++++.|+..++..+   .        
T Consensus       124 ---~~~L~~L~-~D~d~~VR~~aA~~l-------~----------~~~l~~l~~D~d~~VR~~aa~~l---~--------  171 (244)
T 1lrv_A          124 ---LEQLEQMA-ADRDYLVRAYVVQRI-------P----------PGRLFRFMRDEDRQVRKLVAKRL---P--------  171 (244)
T ss_dssp             ---TGGGGGGT-TCSSHHHHHHHHHHS-------C----------GGGGGGTTTCSCHHHHHHHHHHS---C--------
T ss_pred             ---HHHHHHHH-cCCCHHHHHHHHHhc-------C----------HHHHHHHHcCCCHHHHHHHHHcC---C--------
Confidence               11233333 777888888777621       0          11344566777888888877641   1        


Q ss_pred             HHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 015537          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (405)
Q Consensus       280 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~  359 (405)
                             -+.+..++.++++.|+..++..+                  ..+.|..++.++ ++.||..++..++      
T Consensus       172 -------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~-d~~VR~~aa~~l~------  219 (244)
T 1lrv_A          172 -------EESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDP-DWTVRLAAVEHAS------  219 (244)
T ss_dssp             -------GGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCS-SHHHHHHHHHHSC------
T ss_pred             -------HHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCC-CHHHHHHHHHcCC------
Confidence                   13455677888888888877542                  134577788888 9999999887753      


Q ss_pred             HHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537          360 REQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       360 ~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                                  .+.| ..| .+.    ++.||..|.-.||
T Consensus       220 ------------~~~L-~~L-~D~----~~~VR~aa~~~L~  242 (244)
T 1lrv_A          220 ------------LEAL-REL-DEP----DPEVRLAIAGRLG  242 (244)
T ss_dssp             ------------HHHH-HHC-CCC----CHHHHHHHHCCC-
T ss_pred             ------------HHHH-HHc-cCC----CHHHHHHHHHHhC
Confidence                        1233 335 333    3589998876654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.76  E-value=0.045  Score=45.83  Aligned_cols=144  Identities=15%  Similarity=0.045  Sum_probs=105.8

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhhHH
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAG-DSPRCRD  195 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~-~~~~~~~  195 (405)
                      ++.+..+.+++. .++|..|+..|+.. .. .        ..+++.+.. +-.+++-.|++.+..+++.++. ..++.  
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            455566666666 79999999999887 31 1        124666666 5566889999999999999984 33321  


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCCh
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (405)
                            .++.+.... .+++..+++.++..+.-.+.. + ........++|.|..+..+++.-|+....|.|..++..++
T Consensus       140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                  345555555 899999999999888765543 2 1223335678888888888889999999999999999998


Q ss_pred             hHHHHHHh
Q 015537          276 DKIQAVIE  283 (405)
Q Consensus       276 ~~~~~~~~  283 (405)
                      +-+..+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87665554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.72  E-value=0.054  Score=45.99  Aligned_cols=156  Identities=12%  Similarity=0.127  Sum_probs=100.4

Q ss_pred             HHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC----C------CCHHHHHHHHHHHHHHh
Q 015537           77 VMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA  145 (405)
Q Consensus        77 ~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~----~------~~~~~~~~a~~~L~ni~  145 (405)
                      .+++.|++.. +......+..|+..+..++...++.+ ..+++..|+.+|..    .      .+...+..++.||..+.
T Consensus         4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm   82 (233)
T 2f31_A            4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   82 (233)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence            3455555532 22223445566655554433445667 46778888877753    1      12577899999999997


Q ss_pred             cCCchhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhhC
Q 015537          146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNG  212 (405)
Q Consensus       146 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~L~~~l~~  212 (405)
                      .. ......++. .+++..|...|.++++.++..++..|+-+|..+. .. ...++          +..-+.+++..+..
T Consensus        83 n~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  161 (233)
T 2f31_A           83 NN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  161 (233)
T ss_dssp             SS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred             CC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Confidence            76 455555555 4688999999999999999999999998885443 12 33332          22345667777754


Q ss_pred             CCchhHHHHHHHHHHHhhcCCC
Q 015537          213 QPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       213 ~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                      +.+.+....++..+..+....+
T Consensus       162 ~~~~e~~~~~m~lIN~li~~~~  183 (233)
T 2f31_A          162 GTSIALKVGCLQLINALITPAE  183 (233)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCC
T ss_pred             CChHHHHHHHHHHHHHHHCCCC
Confidence            5566777777766666666643

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.71  E-value=0.034  Score=46.60  Aligned_cols=142  Identities=11%  Similarity=0.057  Sum_probs=103.1

Q ss_pred             HHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHh-hhcCCChHHHHHHHHHHHHhcc-CChhHHHHHH
Q 015537          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI  282 (405)
Q Consensus       205 ~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~~  282 (405)
                      .+...|-+++..+++..++..|..+ .        .....++.+.. +...+.-.|+..+..++..++. ..++.     
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-----  139 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-----  139 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----
Confidence            4444454777779999999988877 2        12457788877 5556678899999999998874 33332     


Q ss_pred             hcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh--hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 015537          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (405)
Q Consensus       283 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  360 (405)
                         .++.+...+.+++..++..|...+.-.+....  ...+     -+++.|-.+..++ +..||+.++|.|..++..+|
T Consensus       140 ---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 ---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV-SEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ---THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCH
T ss_pred             ---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCH
Confidence               46788899999999999988877643332211  1111     2567777777777 99999999999999999999


Q ss_pred             HHHHHHHHh
Q 015537          361 EQIQVIMHV  369 (405)
Q Consensus       361 ~~~~~l~~~  369 (405)
                      +-+..+++.
T Consensus       211 d~V~~~~~~  219 (240)
T 3l9t_A          211 DLVKIELKN  219 (240)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            988877753

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.54  E-value=0.13  Score=47.22  Aligned_cols=158  Identities=12%  Similarity=0.117  Sum_probs=109.1

Q ss_pred             HHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC----------CCCHHHHHHHHHHHHHH
Q 015537           76 PVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTNI  144 (405)
Q Consensus        76 ~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~----------~~~~~~~~~a~~~L~ni  144 (405)
                      ..++..|++.- .......+..|+.-+...+..-++.++ .+++..|+.+|..          ..+...+..++.||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            46677777653 233345677777766654334457777 6678888888852          11247889999999999


Q ss_pred             hcCCchhHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhh
Q 015537          145 ASGTSEHTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLN  211 (405)
Q Consensus       145 ~~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~L~~~l~  211 (405)
                      ... ......++.. ..+..|...|.++++.++..++..|+-+|.... .. ...++          +..-+.+++..|.
T Consensus       148 mN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            766 4555555554 789999999999999999999999999986543 22 33333          2344778888885


Q ss_pred             CCCchhHHHHHHHHHHHhhcCCCC
Q 015537          212 GQPKLSMLRNATWTLSNFCRGKPQ  235 (405)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~~~~  235 (405)
                      ...+.+....+...+..+..+.+.
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~d  250 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAEE  250 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCC
Confidence            556777777777777777776543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.22  E-value=0.6  Score=41.37  Aligned_cols=324  Identities=12%  Similarity=0.111  Sum_probs=182.0

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhc----CCC-------CHHHHHHHHHHHHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL----RED-------YPQLQFEAAWALTNI  144 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~----~~~-------~~~~~~~a~~~L~ni  144 (405)
                      +.+...+...||.-++.-+..+|.....++-..++..--.|.+..++..+.    ...       ++.+=..-+.+|..+
T Consensus         9 QAir~WFnTpDPqrrfhMA~tiReWvrrDKlaqvDqAnlPnCiq~lLnII~DGlKPQpvQlP~sYYaQLw~~LLDIL~Rl   88 (619)
T 3c2g_A            9 QAIRLWFNTPDPMQRLHMAKTIRTWIRQDKFAQVDQANMPNCVQQILNIIYDGLKPQPVQLPISYYAQLWYNLLDILRRF   88 (619)
T ss_dssp             HHHHHGGGCCCHHHHHHHHHHHHHHHHHHTTTTSCGGGHHHHHHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhcccCcccCchHHHHHHHHHhcCCCcccccCChhHHHHHHHHHHHHHHHH
Confidence            455677888999999999999998876553333333222344555544443    221       123344444555555


Q ss_pred             hcCC--chhHHHHHhC------C---ChHHHHHhhCC---CC---HHHHHHHHHHHHHhhCC--ChhhHHHHHhcC----
Q 015537          145 ASGT--SEHTKVVIDH------G---AVPIFVKLLYS---PS---DDVREQAVWALGNIAGD--SPRCRDLVLSQG----  201 (405)
Q Consensus       145 ~~~~--~~~~~~~~~~------g---~i~~L~~lL~~---~~---~~i~~~a~~~L~nl~~~--~~~~~~~i~~~~----  201 (405)
                      +...  ..+...+++.      |   .=+.++.+++-   .+   .....+....+-|+..+  .+..|..+...-    
T Consensus        89 T~~~it~PyIHqvVQlF~PreNgp~dFRdLICN~iq~~~~~d~hm~~CAkQvF~Ife~ii~~~KneKLR~dFAr~~Kfek  168 (619)
T 3c2g_A           89 TFLPIISPYIHQVVQMFCPRENGPQDFRELICNLISLNWQKDPHMKHCANQVFQIFNCIIMGVKNEKLRTEFAQHLKFEK  168 (619)
T ss_dssp             HHCGGGGGGHHHHHHTTSCSSSSTTSHHHHHHHHTCGGGGGSTTTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCSHH
T ss_pred             hhccccchHHHHHHHHhccCCCCchhHHHHHHHhcCccccCChHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhHHHH
Confidence            5531  1122222221      1   11223333331   11   22445666777777642  344455544332    


Q ss_pred             ChHHHHHhhhCCC-----chhHHHHHHHHHH-----------HhhcCC-CCCCh---hhhhccHHHHHhhhcCCCh----
Q 015537          202 GLVPLLAQLNGQP-----KLSMLRNATWTLS-----------NFCRGK-PQPPF---DQVSPALPALAHLIHSNDD----  257 (405)
Q Consensus       202 ~i~~L~~~l~~~~-----~~~~~~~a~~~l~-----------~l~~~~-~~~~~---~~~~~~l~~L~~ll~~~d~----  257 (405)
                      .+..|+..+...-     ++.+....-+.++           +=-... +.+..   ....+++-.--.++.-.|+    
T Consensus       169 l~gtL~~yl~pq~~p~~iNPtil~~lRFiISKDt~lKd~~IWn~~~q~d~~PP~s~li~Lkgv~~~s~~~~~~~dpet~~  248 (619)
T 3c2g_A          169 LVGTLSEYFNPQVHPGMINPAIFIIFRFIISKDTRLKDYFIWNNNPHDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLP  248 (619)
T ss_dssp             HHHHHHGGGCTTSCGGGCCTHHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGG
T ss_pred             HHHHHHHhcCCCCCccccCchhhhhhHhhhcccceeccceeeCCccccCCCCChhHHHHHHHHHHhhHHhhcCCChhccc
Confidence            2344444442221     2333322222221           111111 11111   1123333333334433332    


Q ss_pred             ---H------HHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCc
Q 015537          258 ---E------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (405)
Q Consensus       258 ---~------v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~  328 (405)
                         +      |...+... .++.-++.+.++-++...++..+......++.++....+..|-.++....-....  -...
T Consensus       249 qNpel~~LiQVvtR~FDL-L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~  325 (619)
T 3c2g_A          249 QNPELAHLIQVIIRTFDL-LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENI  325 (619)
T ss_dssp             GCHHHHHHHHHHHHHHHH-HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTH
T ss_pred             CCHHHHHHHHHHHHHHHH-HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--cccc
Confidence               2      33333333 3455577778888999999999999999999999999999987776433211110  1246


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhccccc--chhhhHHHHHHHHHhhh
Q 015537          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHF--FFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       329 l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~--~~~~~vr~~A~~al~n~  402 (405)
                      +|.++..+.-..+.++.......|+|..++.....+..+..|.++.|.+.+..+..-  +.+..=|+-||-.++|+
T Consensus       326 LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~  401 (619)
T 3c2g_A          326 LPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC  401 (619)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             chHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence            788888887544888999999999999999888888888999999999988654322  22345677788777775

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.01  E-value=0.051  Score=45.90  Aligned_cols=194  Identities=13%  Similarity=0.130  Sum_probs=127.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHH--hcCcHHHHHHHhcCC-------C-C---HHHHHHHHHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLRE-------D-Y---PQLQFEAAWAL  141 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~l~~Li~lL~~~-------~-~---~~~~~~a~~~L  141 (405)
                      +-.++..|.  +++.+..|+..|.+--  +.-+....++  .-|.+..|++=+-+-       . .   +.-...|+..|
T Consensus         5 i~qli~~L~--~p~~Re~AL~eLsk~R--e~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl   80 (268)
T 2fv2_A            5 IYQWINELS--SPETRENALLELSKKR--ESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL   80 (268)
T ss_dssp             HHHHHHHTS--STTTHHHHHHHHHHHT--TTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc--CchhHHHHHHHHHHhh--hccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence            344555554  4566888988887742  2233333322  457777765433221       1 0   11234555566


Q ss_pred             HHHhcCCchhHHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHhhhCCCc
Q 015537          142 TNIASGTSEHTKVVIDHGAVPIFVKLLYSP-----SDDVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (405)
Q Consensus       142 ~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~~i~~~a~~~L~nl~~-~~~~~~~~i~~~~~i~~L~~~l~~~~~  215 (405)
                      .-+|++ ++.|..+++.++.-+|..+|...     .+.++-.+++++|.+.. ++++.-..+++.++++..++.+ ..++
T Consensus        81 QcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim-e~Gs  158 (268)
T 2fv2_A           81 QCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM-ESGS  158 (268)
T ss_dssp             HHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH-HHSC
T ss_pred             HHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH-hhcc
Confidence            667776 99999999999888888888753     35789999999999884 5677778888999999999999 6677


Q ss_pred             hhHHHHHHHHHHHhhcCCCC--------CChhhhhccHHH-HHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537          216 LSMLRNATWTLSNFCRGKPQ--------PPFDQVSPALPA-LAHLIHSNDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~~--------~~~~~~~~~l~~-L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (405)
                      +-.+..|++.+..+-.++..        ..+..+..++.. +..+....++.+...++++-..|+++.
T Consensus       159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            77788888877776654311        112222333432 233445667888888888888888654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.01  E-value=0.49  Score=49.60  Aligned_cols=244  Identities=15%  Similarity=0.117  Sum_probs=146.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCc---HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV---VPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~---l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      .+-.|++.|+.-+.+........+..- ...+....+.+...|-   +..+.+++.+.. -. ..+|+++|...... ..
T Consensus       312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~~-~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-l~-~~ea~~~l~~~~~~-~~  387 (1056)
T 1lsh_A          312 KFLRLTAFLRNVDAGVLQSIWHKLHQQ-KDYRRWILDAVPAMATSEALLFLKRTLASEQ-LT-SAEATQIVASTLSN-QQ  387 (1056)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHTTS-HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SC-HHHHHHHHHHHHHT-CC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcc-HHHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-CC-HHHHHHHHHHhhcc-CC
Confidence            356677777776655544443333210 0000122334444453   555566776654 12 23355555443321 11


Q ss_pred             hHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHhhh---CCCchhHH
Q 015537          151 HTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSML  219 (405)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~L~~~l~---~~~~~~~~  219 (405)
                      -..     ..+..+..++.+    .++.+++.++-+++.+..    +.+.|..     ..++++.+.+.   ...+..-.
T Consensus       388 Pt~-----e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~  457 (1056)
T 1lsh_A          388 ATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEI  457 (1056)
T ss_dssp             CCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCH-----HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHH
Confidence            111     245566677765    467788888888888762    2222211     23444544442   34467778


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC-------CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHH
Q 015537          220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (405)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  292 (405)
                      ..++.+|.|+-..          ..++.|..++..       ....++..|+|+|..++...+..++        +.+.+
T Consensus       458 ~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~  519 (1056)
T 1lsh_A          458 VLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLP  519 (1056)
T ss_dssp             HHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHH
T ss_pred             HHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHH
Confidence            8899999999753          467777777742       1357889999999999877665544        56677


Q ss_pred             hc--CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 015537          293 FL--MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (405)
Q Consensus       293 lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~  359 (405)
                      +.  ...++++|..|+..|-.  +..+ .       ..+..+...+..+++.+|.....-.|.+++..+
T Consensus       520 i~~n~~e~~EvRiaA~~~Lm~--t~P~-~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          520 IFLNVAIKSELRIRSCIVFFE--SKPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHCTTSCHHHHHHHHHHHHH--TCCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HhcCCCCChHHHHHHHHHHHH--HCcC-H-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            77  45677899999888732  2222 1       235567777877668899999888999998754

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.86  E-value=0.048  Score=48.14  Aligned_cols=231  Identities=16%  Similarity=0.177  Sum_probs=144.2

Q ss_pred             HHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHH
Q 015537          140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML  219 (405)
Q Consensus       140 ~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~  219 (405)
                      -|.|+..+++...+-++..+++..+..+++-++.++.......|...+....-+..-  -.+.++.++..+..+++.++.
T Consensus       265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~eDdvv  342 (619)
T 3c2g_A          265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPDDEVI  342 (619)
T ss_dssp             HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCCcceE
Confidence            345666666888999999999999999999999999999999999987443322111  123678888888888899999


Q ss_pred             HHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcC-------CChH-------HHHHHHHHHHHhcc------------
Q 015537          220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-------NDDE-------VLTDACWALSYLSD------------  272 (405)
Q Consensus       220 ~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~-------~d~~-------v~~~a~~~l~~l~~------------  272 (405)
                      ...+..|+|...++ |-.....-.++++.|-..+..       .+..       +..++++++.++.-            
T Consensus       343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~  422 (619)
T 3c2g_A          343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKT  422 (619)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCC
T ss_pred             EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCcccc
Confidence            99999999999987 545555558888887766532       1222       44445555555421            


Q ss_pred             -CChh--HHHHHHhcCChHHHHHhcCCCCc------chHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCc--
Q 015537          273 -GTND--KIQAVIEAGVFPRLAEFLMHPSP------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--  341 (405)
Q Consensus       273 -~~~~--~~~~~~~~~~l~~L~~lL~~~~~------~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~--  341 (405)
                       +..+  ++..+++..++.+|+..|+-..-      +++...++.+--+.....--     ..++    ....++...  
T Consensus       423 ~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~P-----kd~~----l~VtDd~rk~N  493 (619)
T 3c2g_A          423 AGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVP-----KDGV----LNVIDENRKEN  493 (619)
T ss_dssp             CCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSC-----CTTG----GGCCCTTTCCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCc-----hhhh----ccccchhhhhh
Confidence             1111  23334555777888888865432      34555555543333211100     0111    122222111  


Q ss_pred             --hhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537          342 --KSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIVAFFFMF  382 (405)
Q Consensus       342 --~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~lL~~~  382 (405)
                        -.+..+-+|+-+.=+. ...+..+++++ ..+..|+.+++..
T Consensus       494 LvGHIciA~sWa~~Q~tNertqdTkqQLiE-R~fSLL~~LmEQc  536 (619)
T 3c2g_A          494 LIGHICAAYSWVFRQPNNTRTQSTKQQLVE-RTISLLLVLMEQC  536 (619)
T ss_dssp             HHHHHHHHHHHHHHSCCCTTTHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhhcCccccchhhHHHHHHH-HHHHHHHHHHHHh
Confidence              1345555676665543 46666777775 4677788877655

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.86  E-value=0.48  Score=41.74  Aligned_cols=173  Identities=12%  Similarity=0.068  Sum_probs=103.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG----AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR  192 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~  192 (405)
                      +..+.++++-+.  +.++-++..+.-.+.+ +.....+.+.+    ++..+...+.+ ..+..+-.++.+++|+..... 
T Consensus       105 l~~l~kil~WP~--~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCPE--DIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSCT--TTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCCH--HhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            456666664333  4566666666665553 44444333322    22233444443 356678899999999997765 


Q ss_pred             hHHHHHhcCChHHHHHhhh---CCCchhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcC-CChHHHHHHHHHH
Q 015537          193 CRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-NDDEVLTDACWAL  267 (405)
Q Consensus       193 ~~~~i~~~~~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l  267 (405)
                      .++.+...  ...++..+.   .+.+..++..++..+.|++-.. ..........++..+..++.. .|++....++-+|
T Consensus       181 g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            55655542  233333332   4567889999999999998753 222223334455556666643 5899999999999


Q ss_pred             HHhccCChhHHHHHHhcCChHHHHHhcCC
Q 015537          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (405)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  296 (405)
                      +++...+.+..+..-..|+-..+-...+.
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99998766544434344555555555544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.83  E-value=0.3  Score=44.76  Aligned_cols=183  Identities=12%  Similarity=0.116  Sum_probs=114.8

Q ss_pred             HHHHHhhcCCCh-HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC----C------CCHHHHHHHHHHHHHH
Q 015537           76 PVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNI  144 (405)
Q Consensus        76 ~~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~----~------~~~~~~~~a~~~L~ni  144 (405)
                      ..++..|++... ......+..|+..+..++...++.+. .+++..|+.+|..    .      .+...+..++.||..+
T Consensus         7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal   85 (386)
T 2bnx_A            7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   85 (386)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            345666665432 22233456666555544334456675 5677777777742    1      1257789999999998


Q ss_pred             hcCCchhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhh
Q 015537          145 ASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLN  211 (405)
Q Consensus       145 ~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~L~~~l~  211 (405)
                      ... ......++. .+++..+...|.++++.++..++..|+-+|..+. .. ...++          +..-+.+++..+.
T Consensus        86 mN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~  164 (386)
T 2bnx_A           86 MNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  164 (386)
T ss_dssp             TSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS
T ss_pred             hCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            776 444555554 4789999999999999999999999988886543 22 33332          2335667888885


Q ss_pred             CCCchhHHHHHHHHHHHhhcCCCCCChh------hh-hccHHHHHhhhcCCChHHH
Q 015537          212 GQPKLSMLRNATWTLSNFCRGKPQPPFD------QV-SPALPALAHLIHSNDDEVL  260 (405)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~------~~-~~~l~~L~~ll~~~d~~v~  260 (405)
                      .+.+.+....++..+..+..+.+.....      .. .|+.+.+-.+-...++.+.
T Consensus       165 ~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~  220 (386)
T 2bnx_A          165 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK  220 (386)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence            5667788888887777777775432221      12 4555555444444455443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.80  E-value=0.083  Score=44.63  Aligned_cols=140  Identities=12%  Similarity=0.167  Sum_probs=104.8

Q ss_pred             HHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC----CHHHHHHHHHHHHHHhc-CCchhHHHHHhCCChHHHH
Q 015537           91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFV  165 (405)
Q Consensus        91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~----~~~~~~~a~~~L~ni~~-~~~~~~~~~~~~g~i~~L~  165 (405)
                      ..|+..|..+++ + .+....++++.+.-.|..+|+..+    .+.+|..++.+++.+.. ++++....+.+.+++|..+
T Consensus        74 cnaLaLlQcvAs-h-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           74 CNALALLQCVAS-H-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHH-C-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHc-C-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            445555566655 2 677888999998888888887654    25689999999999886 4567778888999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH------Hh-cCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLV------LS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       166 ~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i------~~-~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      +.++.++.--+..|...+..|..++....-..      .. ..++..++..+...+++.+.++++++-..|+++
T Consensus       152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            99999999999999999999886654332111      11 113444555555777888999999999999887

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.72  E-value=0.1  Score=46.10  Aligned_cols=110  Identities=12%  Similarity=0.047  Sum_probs=73.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH--H
Q 015537          120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR--D  195 (405)
Q Consensus       120 ~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~--~  195 (405)
                      .+...+.++..+..+.-++++++|+... +..+..+...  .+++.+...+.+++..++..+...+.|++......+  +
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~  229 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE  229 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence            3445554443477799999999999887 6667666653  345556666666789999999999999984211000  1


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      ..  ...+..+..++....|.+...-++-+|.+|...
T Consensus       230 ~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          230 GK--AQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            11  113344455554556888888888899998865

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.61  E-value=0.067  Score=49.55  Aligned_cols=121  Identities=15%  Similarity=0.145  Sum_probs=91.3

Q ss_pred             CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHh
Q 015537          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH  250 (405)
Q Consensus       171 ~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~  250 (405)
                      +++..+..|+..|.....+-|..++.     ++..+++++ .+.|..++..++..|..+|.+      ..+..+..+|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            47889999999999999888877655     577899999 889999999999999999987      336788889999


Q ss_pred             hhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       251 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      +|+++++.-...+-++|..+...++..        .+..+...+..+++.+|..++..|..
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHH
Confidence            999998877777777777776555432        22333333333456677776666643

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=95.56  E-value=2.8  Score=43.84  Aligned_cols=145  Identities=12%  Similarity=0.098  Sum_probs=85.3

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-hhhH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGDS-PRCR  194 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~  194 (405)
                      +++.+..+|..+.++.+...++.+|+...+=-  ....+++.+.++.| ..+|.  ++.++..|+.||..+.+.. +.+.
T Consensus       207 Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~  282 (1073)
T 3gjx_A          207 IFQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYE  282 (1073)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGH
T ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchH
Confidence            34444555554444788888889999887742  34567888889988 46665  7789999999999998542 2222


Q ss_pred             HHHHh--cCChHHHHHhh------------hCCCchhHHHHHHHHHHHhhcCCC------CCChhhhhccHHHHHhhhcC
Q 015537          195 DLVLS--QGGLVPLLAQL------------NGQPKLSMLRNATWTLSNFCRGKP------QPPFDQVSPALPALAHLIHS  254 (405)
Q Consensus       195 ~~i~~--~~~i~~L~~~l------------~~~~~~~~~~~a~~~l~~l~~~~~------~~~~~~~~~~l~~L~~ll~~  254 (405)
                      +.+..  .+.+..+-.++            ....+.+.....+.++..+....-      +........++..++.+...
T Consensus       283 ~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~  362 (1073)
T 3gjx_A          283 EQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEV  362 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCC
Confidence            22211  01111111111            123355777777777776655431      01112223445556666677


Q ss_pred             CChHHHHHHHH
Q 015537          255 NDDEVLTDACW  265 (405)
Q Consensus       255 ~d~~v~~~a~~  265 (405)
                      +|.++...++.
T Consensus       363 ~d~ei~kitf~  373 (1073)
T 3gjx_A          363 EETEIFKICLE  373 (1073)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            78887766543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.01  E-value=0.29  Score=51.25  Aligned_cols=134  Identities=16%  Similarity=0.230  Sum_probs=86.5

Q ss_pred             ccHHHHHhhhcC----CChHHHHHHHHHHHHhccC----C----hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537          243 PALPALAHLIHS----NDDEVLTDACWALSYLSDG----T----NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (405)
Q Consensus       243 ~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~----~----~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~  310 (405)
                      ..+..+..++.+    .++.++..++.+++.|...    .    .+.++.     +...+...+...+..-+..++++||
T Consensus       391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~-----i~~~l~~~~~~~~~~~~~~~LkaLG  465 (1056)
T 1lsh_A          391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQP-----LHDLLSQSSDRAKEEEIVLALKALG  465 (1056)
T ss_dssp             HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHH-----HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH-----HHHHHHHHHhcCChHHHHHHHHHhh
Confidence            345556666654    3566777777777776532    1    111121     2233444556667777888999999


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHhhcC------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccc
Q 015537          311 NIVTGDDMQTQCVIEYQALPCLLNLLSG------NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLH  384 (405)
Q Consensus       311 nl~~~~~~~~~~~~~~g~l~~L~~ll~~------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~  384 (405)
                      |+..  +         ..++.|.+++..      +...+++..|.|+|.+++...|..++.        .|+.++.+...
T Consensus       466 N~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~--------il~~i~~n~~e  526 (1056)
T 1lsh_A          466 NAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQE--------IVLPIFLNVAI  526 (1056)
T ss_dssp             HHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHH--------HHHHHHHCTTS
T ss_pred             ccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHH--------HHHHHhcCCCC
Confidence            9864  2         346667777642      114578899999999998877765554        45666644333


Q ss_pred             cchhhhHHHHHHHHHhhhc
Q 015537          385 FFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       385 ~~~~~~vr~~A~~al~n~~  403 (405)
                         +++||-.|++.|..++
T Consensus       527 ---~~EvRiaA~~~Lm~t~  542 (1056)
T 1lsh_A          527 ---KSELRIRSCIVFFESK  542 (1056)
T ss_dssp             ---CHHHHHHHHHHHHHTC
T ss_pred             ---ChHHHHHHHHHHHHHC
Confidence               4689999999998764

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=94.93  E-value=1.8  Score=39.41  Aligned_cols=235  Identities=13%  Similarity=0.065  Sum_probs=118.2

Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      ....++...+-.|+.++.++|+.=++..-.+|..+-+.-...|..+.. .+-..+.+.+.....-.-....+.++..+..
T Consensus       122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIin  200 (403)
T 3fga_B          122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN  200 (403)
T ss_dssp             HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence            344455556778999999999999999888888887655544444332 1223445544333322333456666666666


Q ss_pred             CCCCCC-hhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537          232 GKPQPP-FDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (405)
Q Consensus       232 ~~~~~~-~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l  309 (405)
                      +...+- .....-....|+.|-+... ...-.....++..+...++.....++     ..++..--..+..=...-+.-+
T Consensus       201 Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~El  275 (403)
T 3fga_B          201 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNEL  275 (403)
T ss_dssp             HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHHHHH
Confidence            652222 2222233455566655543 22334444555555555555444222     3333333222322222234444


Q ss_pred             hHhhcCC-hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc-ccc
Q 015537          310 GNIVTGD-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH---VHAFSIIVAFFFM-FLH  384 (405)
Q Consensus       310 ~nl~~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~lL~~-~~~  384 (405)
                      ..+...- +...+.+. ..+...+...+.++ +..|.+.|...+.|      +.+..++.   ..++|.+...|.. ..+
T Consensus       276 e~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~~~~  347 (403)
T 3fga_B          276 EEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSKT  347 (403)
T ss_dssp             HHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4555322 22222222 23666777777787 77887777655422      22233331   2344554444422 111


Q ss_pred             cchhhhHHHHHHHHHhh
Q 015537          385 FFFGAIIYKLAIWLCLV  401 (405)
Q Consensus       385 ~~~~~~vr~~A~~al~n  401 (405)
                      + =...||..|.-++.-
T Consensus       348 H-Wn~~v~~l~~~vlk~  363 (403)
T 3fga_B          348 H-WNKTIHGLIYNALKL  363 (403)
T ss_dssp             C-SCHHHHHHHHHHHHH
T ss_pred             c-cCHHHHHHHHHHHHH
Confidence            1 123577776666643

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.47  E-value=0.54  Score=43.63  Aligned_cols=119  Identities=18%  Similarity=0.029  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL  210 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l  210 (405)
                      +..+.-|+..|......-|+...     .++..++.+..+.+..||.+|+..|..+|.+ . .-..     +.+.|+++|
T Consensus        42 ~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~QlL  109 (507)
T 3u0r_A           42 TKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILTQLL  109 (507)
T ss_dssp             HHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHHHHH
Confidence            78899999999998887787665     3567889999999999999999999999987 2 2222     456788888


Q ss_pred             hCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHH
Q 015537          211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY  269 (405)
Q Consensus       211 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~  269 (405)
                       +..++.-...+-++|..+...+|       .+.+..+...+.++++.++..++..|..
T Consensus       110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence             67777777777777777776543       3455555555555678888887777654

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.85  E-value=2.6  Score=35.46  Aligned_cols=167  Identities=11%  Similarity=0.135  Sum_probs=100.9

Q ss_pred             chhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchh
Q 015537          149 SEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS  217 (405)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~  217 (405)
                      ..+.+.+ ..+++..|+.+|..           .+...+..++.||..+..........+...+.+..+...+ .++++.
T Consensus        34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~  111 (233)
T 2f31_A           34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  111 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHH
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence            4555566 34667777777642           1456788899999998866655544444555677777777 788999


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-C
Q 015537          218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-H  296 (405)
Q Consensus       218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~  296 (405)
                      ++..++..|..+|......      |..+.++..+.+            ...           .-+..-+..++..|. +
T Consensus       112 ~r~~~leLL~~lc~~~~~~------G~~~~VL~Al~~------------~~~-----------~~e~~RF~~lv~~l~~~  162 (233)
T 2f31_A          112 MMIDAAKLLSALCILPQPE------DMNERVLEAMTE------------RAE-----------MDEVERFQPLLDGLKSG  162 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSSS------CHHHHHHHHHHH------------HHH-----------HHTSCTTHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHhCCCCC------ChHHHHHHHHHH------------HHH-----------hCCcchHHHHHHHHhcC
Confidence            9999999999999874210      102222222221            000           011223455666665 3


Q ss_pred             CCcchHHHHHHHHhHhhcCChh------hHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 015537          297 PSPSVLIPALRTVGNIVTGDDM------QTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (405)
Q Consensus       297 ~~~~v~~~a~~~l~nl~~~~~~------~~~~~~~~g~l~~L~~ll~~~~~~~v~~~  347 (405)
                      .+.+.+..++..|..++.+.+.      .+..+...|+.+.+-.+=... ++.+...
T Consensus       163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~-~~~L~~Q  218 (233)
T 2f31_A          163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMKVQ  218 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC-CHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-CHHHHHH
Confidence            4556777777777777765542      234455778777776665544 5555443

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=93.76  E-value=2.9  Score=35.70  Aligned_cols=102  Identities=9%  Similarity=0.073  Sum_probs=72.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      +-.+++.-+..........+...+.++... ++.    .-..+++.++.+..+.+ .++|...+..|...+...++... 
T Consensus        17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~----ll~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-   89 (257)
T 3gs3_A           17 VVDWCNELVIASPSTKCELLAKVQETVLGS-CAE----LAEEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-   89 (257)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG----GHHHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred             HHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh----HHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence            445555555433368888999999976553 332    11345777888766665 89999999999988865444322 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~  187 (405)
                          ..++.|..+++++++.+...++.+.+++.
T Consensus        90 ----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY  118 (257)
T 3gs3_A           90 ----HVINVVSMLLRDNSAQVIKRVIQACGSIY  118 (257)
T ss_dssp             ----HHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                45778889999999999999998888764

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=93.72  E-value=3.6  Score=38.14  Aligned_cols=237  Identities=13%  Similarity=0.058  Sum_probs=125.3

Q ss_pred             chhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                      +......++...+..|+.++.++|+.-++..-.+|..+-+.-...|..+... +-..+.+.+.......-...++..+..
T Consensus       152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS  230 (449)
T 2npp_B          152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS  230 (449)
T ss_dssp             STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred             hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence            3334555566678889999999999999999888888765544444443321 233455555343333444566777777


Q ss_pred             hhcCCCCC-ChhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHH
Q 015537          229 FCRGKPQP-PFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (405)
Q Consensus       229 l~~~~~~~-~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  306 (405)
                      +..+...+ ......-+...|+.|.+... ...-.....++..+...++.....+     +..|+..-=..+..=...-+
T Consensus       231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL  305 (449)
T 2npp_B          231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFL  305 (449)
T ss_dssp             HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHH
T ss_pred             HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHH
Confidence            77776322 22222333455666665543 2233344455555555555444322     23333333222322223334


Q ss_pred             HHHhHhhcCC-hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc-
Q 015537          307 RTVGNIVTGD-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH---VHAFSIIVAFFFM-  381 (405)
Q Consensus       307 ~~l~nl~~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~lL~~-  381 (405)
                      .-|..+...- +.....+. ..+...+...+.++ +..|.+.|+..+.|     +. +..++.   ..++|.++..|.. 
T Consensus       306 ~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~-i~~li~~n~~~IlPii~p~L~~~  377 (449)
T 2npp_B          306 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN-----EY-IMSLISDNAAKILPIMFPSLYRN  377 (449)
T ss_dssp             HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HH-HHHHHHTTHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HH-HHHHHHhchhhhHHhhHHHHHHH
Confidence            4455555322 22222222 24677778888887 88888887654432     22 222332   2345666665522 


Q ss_pred             ccccchhhhHHHHHHHHHh
Q 015537          382 FLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       382 ~~~~~~~~~vr~~A~~al~  400 (405)
                      ..++ =...||..|.-++.
T Consensus       378 s~~H-Wn~~V~~la~~vlk  395 (449)
T 2npp_B          378 SKTH-WNKTIHGLIYNALK  395 (449)
T ss_dssp             TTCC-SSTTHHHHHHHHHH
T ss_pred             HHHh-cCHHHHHHHHHHHH
Confidence            2222 12357777766654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.49  E-value=4.4  Score=36.94  Aligned_cols=159  Identities=11%  Similarity=0.110  Sum_probs=98.1

Q ss_pred             chhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchh
Q 015537          149 SEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS  217 (405)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~  217 (405)
                      ..+.+.++ .+++..|+.+|..           .+..++..++.||..+..........+.....+..|...+ .+.++.
T Consensus       100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~  177 (383)
T 3eg5_B          100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  177 (383)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHH
T ss_pred             cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchH
Confidence            45556665 4567777777741           2457888999999999866554544444555677788877 788899


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCC-
Q 015537          218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-  296 (405)
Q Consensus       218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-  296 (405)
                      ++..++..|..+|....+.      |+.+.++.-+            ..+..           .-+..-+..++..|.. 
T Consensus       178 ~~~~aleLL~~lc~~~~~~------gG~~~VL~Al------------~~~~~-----------~~e~~RF~~lv~~L~~~  228 (383)
T 3eg5_B          178 MMIDAAKLLSALCILPQPE------DMNERVLEAM------------TERAE-----------MDEVERFQPLLDGLKSG  228 (383)
T ss_dssp             HHHHHHHHHHHHHTCCSST------THHHHHHHHH------------HHHHH-----------HHTSCTTHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHhCcCcC------CcHHHHHHHH------------HHHHH-----------hCCCCcHHHHHHHHHcc
Confidence            9999999999999874211      1122222221            11111           1122345566667765 


Q ss_pred             CCcchHHHHHHHHhHhhcCCh------hhHHHHHhcCchHHHHHhhcC
Q 015537          297 PSPSVLIPALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSG  338 (405)
Q Consensus       297 ~~~~v~~~a~~~l~nl~~~~~------~~~~~~~~~g~l~~L~~ll~~  338 (405)
                      .+.+.+..++..|..++.+.+      ..+..+...|+.+.+..+=..
T Consensus       229 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~  276 (383)
T 3eg5_B          229 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREI  276 (383)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcC
Confidence            456777777777777776554      223445577888877764433

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=93.21  E-value=4.8  Score=36.56  Aligned_cols=102  Identities=9%  Similarity=0.081  Sum_probs=73.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      +-.+++.-.......+...+..++.++-.. ++.    .-.++++.++++-...+ .++|...+..|...+....+... 
T Consensus        27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-   99 (386)
T 3o2t_A           27 VVDLLNQAALITNDSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-   99 (386)
T ss_dssp             HHHHHHHHHHCCSTHHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred             HHHHHHhhhccChHHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence            344444333322357888888999875543 332    22567999999988887 89999999999888875444422 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~  187 (405)
                          .+++.|..+|.++++.+...++.+.+++.
T Consensus       100 ----~~l~~L~~LL~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          100 ----KLIANLNMLLRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                35778888999999999999998888874

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.03  E-value=4.6  Score=43.03  Aligned_cols=259  Identities=9%  Similarity=0.039  Sum_probs=144.4

Q ss_pred             HHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHhcC----
Q 015537           75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASG----  147 (405)
Q Consensus        75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~-~~~~~~~~~~a~~~L~ni~~~----  147 (405)
                      +..++..+.+.  ++..+.+|-..|.++-..   +        .....+...|. .+.++.+|..|+..|.|....    
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            45555555554  667788888888776321   1        12344444333 333489999999999987542    


Q ss_pred             -CchhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHH
Q 015537          148 -TSEHTKVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (405)
Q Consensus       148 -~~~~~~~~~~~g~i~~L~~lL~~---~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a  222 (405)
                       +++.+ ..+...++..+...-..   ....++.+...++..|+... |..     -.+.++.++.++..  +......+
T Consensus        82 l~~e~k-~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~--~~~~~e~~  153 (1204)
T 3a6p_A           82 MSRLEK-VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ--GETQTELV  153 (1204)
T ss_dssp             SCHHHH-HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT--CHHHHHHH
T ss_pred             CCHHHH-HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC--CHHHHHHH
Confidence             23333 33333455555443221   45789999999999987432 211     23456777777733  44556778


Q ss_pred             HHHHHHhhcCC-C--CCChhh-------h----hccHHHHHhhhcC-------------------CChHHHHHHHHHHHH
Q 015537          223 TWTLSNFCRGK-P--QPPFDQ-------V----SPALPALAHLIHS-------------------NDDEVLTDACWALSY  269 (405)
Q Consensus       223 ~~~l~~l~~~~-~--~~~~~~-------~----~~~l~~L~~ll~~-------------------~d~~v~~~a~~~l~~  269 (405)
                      +.+|..++... .  ......       +    ..+++.+..++..                   .+..+...++.++.+
T Consensus       154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            88888887541 1  111000       1    1333444444432                   123466677777776


Q ss_pred             hccCChhHHHHHHhcC--ChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh--hhHHHHHh---cCchHHHHHhhc-----
Q 015537          270 LSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIE---YQALPCLLNLLS-----  337 (405)
Q Consensus       270 l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~---~g~l~~L~~ll~-----  337 (405)
                      ....-+.  ..+.+..  +++.+..++.  ++.++..|+.+|..++....  .....++.   ...+..++....     
T Consensus       234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~  309 (1204)
T 3a6p_A          234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG  309 (1204)
T ss_dssp             TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred             HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence            6544332  2333432  6777776665  56789999999999997442  22111221   111334444432     


Q ss_pred             --CCCchhHHHHHHHHHHHHh
Q 015537          338 --GNYKKSIKKEACWTVSNIT  356 (405)
Q Consensus       338 --~~~~~~v~~~a~~~L~nl~  356 (405)
                        +..+..+.+..|..+..+.
T Consensus       310 ~~~e~d~e~~k~l~~ll~~lg  330 (1204)
T 3a6p_A          310 GLVEKHYVFLKRLCQVLCALG  330 (1204)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHH
Confidence              1114567777777777775

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=92.18  E-value=4  Score=43.50  Aligned_cols=220  Identities=13%  Similarity=0.079  Sum_probs=127.4

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChhhHH
Q 015537          123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGD-----SPRCRD  195 (405)
Q Consensus       123 ~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~i~~~a~~~L~nl~~~-----~~~~~~  195 (405)
                      ..++.+.+...+.+|-..|..+-.. +         .+...+...|  .+.++.++..|+.+|-|....     +++.+.
T Consensus        19 ~~~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~   88 (1204)
T 3a6p_A           19 VMMDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV   88 (1204)
T ss_dssp             HHHCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred             HHhCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            3344322367788888777776443 1         2334444433  345789999999999988632     233333


Q ss_pred             HHHhcCChHHHHHhhhCC------CchhHHHHHHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHH
Q 015537          196 LVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS  268 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~------~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~  268 (405)
                      .+.     ..++..+...      .+..++..++.+++.++... |    .....+++.++.++.+ ++.....++.+|.
T Consensus        89 ~Ir-----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~  158 (1204)
T 3a6p_A           89 YLK-----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILL  158 (1204)
T ss_dssp             HHH-----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence            332     2344443221      45788888999999988765 4    2235788888888866 4555777888888


Q ss_pred             HhccC-------ChhHHH----HHHhc--CChHHHHHhcCC-------------------CCcchHHHHHHHHhHhhcCC
Q 015537          269 YLSDG-------TNDKIQ----AVIEA--GVFPRLAEFLMH-------------------PSPSVLIPALRTVGNIVTGD  316 (405)
Q Consensus       269 ~l~~~-------~~~~~~----~~~~~--~~l~~L~~lL~~-------------------~~~~v~~~a~~~l~nl~~~~  316 (405)
                      .+++.       ......    .+.+.  .+++.+..+|..                   .+..+...++.++.+...--
T Consensus       159 ~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi  238 (1204)
T 3a6p_A          159 RLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV  238 (1204)
T ss_dssp             HHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred             HHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc
Confidence            77642       111111    11111  222333333322                   12346667778887766543


Q ss_pred             hhhHHHHHhcC--chHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHH
Q 015537          317 DMQTQCVIEYQ--ALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQVIM  367 (405)
Q Consensus       317 ~~~~~~~~~~g--~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~  367 (405)
                      +.  ..+.+..  +++.+..++.+   +.++..|+-+|..++...  ++....++
T Consensus       239 ~~--~~i~~~~~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~~~~~~li  288 (1204)
T 3a6p_A          239 SM--SHITAENCKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKLEDRKPLM  288 (1204)
T ss_dssp             CH--HHHHTTTSHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred             CH--HHHHhccchHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence            31  2233433  77777776654   578999999999998733  44433333

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=91.57  E-value=0.16  Score=29.12  Aligned_cols=38  Identities=29%  Similarity=0.533  Sum_probs=27.1

Q ss_pred             HhhhhcCC-CCCchHHhhhhhHHHHHHHHHhhhHHHHhhhh
Q 015537           11 SRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRR   50 (405)
Q Consensus        11 ~r~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~   50 (405)
                      +|...||+ +...++.. ||.+ ..+..|++|-+.++..|+
T Consensus         2 PR~sqYK~k~~~~~q~~-rRr~-~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSE-RRRR-LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTH-HHHH-HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHH-HHHH-HHHHHHHHHHHHHHHhcC
Confidence            57788999 44444444 4444 678889999998887774

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=91.39  E-value=4.7  Score=37.35  Aligned_cols=226  Identities=13%  Similarity=0.084  Sum_probs=125.0

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-----c
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-----S  149 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~-----~  149 (405)
                      +..|+..+.|+|+..+...-..|+.+-..  -...+.++...+-..|.+++.......-..+.+.+++.|..|-     +
T Consensus       164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe  241 (449)
T 2npp_B          164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  241 (449)
T ss_dssp             HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence            66788888899998888888888777543  2334445544455566666644332334567888888887763     2


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          150 EHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                      +++..+     ...|+.|.+...- ..-.+...++..+...++.....+     +..|++.- ..++..=....+.-+..
T Consensus       242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~elee  310 (449)
T 2npp_B          242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEE  310 (449)
T ss_dssp             HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhC-CCCCchHHHHHHHHHHH
Confidence            333222     2334444554332 234456677766665555443332     23344333 22233222333334444


Q ss_pred             hhcCCCCCChh-hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc--CChHHHHHhc-----CCCCcc
Q 015537          229 FCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFL-----MHPSPS  300 (405)
Q Consensus       229 l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~l~~L~~lL-----~~~~~~  300 (405)
                      +...-+...+. ....+...+..++.+..-.|.+.|+...     .++.....+.+.  .++|.+...|     .|-+..
T Consensus       311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w-----~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~  385 (449)
T 2npp_B          311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW-----NNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKT  385 (449)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG-----GCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-----CCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHH
Confidence            55443222222 3356777788888888888888876432     122222212111  2456666655     233667


Q ss_pred             hHHHHHHHHhHhhcCChh
Q 015537          301 VLIPALRTVGNIVTGDDM  318 (405)
Q Consensus       301 v~~~a~~~l~nl~~~~~~  318 (405)
                      ++..+..++.-+..-++.
T Consensus       386 V~~la~~vlk~l~e~d~~  403 (449)
T 2npp_B          386 IHGLIYNALKLFMEMNQK  403 (449)
T ss_dssp             HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHCHH
Confidence            888888888877765553

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=89.59  E-value=3.1  Score=37.88  Aligned_cols=223  Identities=14%  Similarity=0.094  Sum_probs=115.8

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc-----
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-----  149 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~-----  149 (405)
                      +-.|+..+.|+|+..+...-..|+.+-..  -...+.++...+-..|.+++.....-.-..+.+.+++.|..|-.     
T Consensus       131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke  208 (403)
T 3fga_B          131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  208 (403)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence            56677788888888887777777766432  22334444444445566665443212234466777777766532     


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          150 EHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~~~~~-~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                      ++...+.     ..|+.+.+.+.- ..-.+...++..+...++.....+     +..|++.- ..++..-....+.-+..
T Consensus       209 ehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~Ele~  277 (403)
T 3fga_B          209 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEE  277 (403)
T ss_dssp             HHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence            2222222     233334444332 233566667777665555443332     22333333 22233323333334444


Q ss_pred             hhcCCCCCChh-hhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhc-----CCCCc
Q 015537          229 FCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL-----MHPSP  299 (405)
Q Consensus       229 l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL-----~~~~~  299 (405)
                      +...-+...+. ....++..+...+.++.-.|.+.|+...     .++.... ++..   .++|.+...|     .|-+.
T Consensus       278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w-----nNe~i~~-li~~n~~~IlPii~p~L~~~~~~HWn~  351 (403)
T 3fga_B          278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW-----NNEYIMS-LISDNAAKILPIMFPSLYRNSKTHWNK  351 (403)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG-----GCHHHHH-HHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh-----ccHHHHH-HHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence            44433222222 2356677788888888888888766432     1222222 2221   2345544444     34467


Q ss_pred             chHHHHHHHHhHhhcCC
Q 015537          300 SVLIPALRTVGNIVTGD  316 (405)
Q Consensus       300 ~v~~~a~~~l~nl~~~~  316 (405)
                      .++..+..++.-+..-+
T Consensus       352 ~v~~l~~~vlk~l~e~d  368 (403)
T 3fga_B          352 TIHGLIYNALKLFMEMN  368 (403)
T ss_dssp             HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            88888888887766544

>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20

Probab=89.49  E-value=4.9  Score=36.48  Aligned_cols=193  Identities=12%  Similarity=0.035  Sum_probs=104.7

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      ...++...+..|+.++.++|+.=++..-.+|..+-+.-...|..+.. .+-..+.+.+.......-...++..+..+..+
T Consensus       168 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIng  246 (392)
T 2jak_A          168 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING  246 (392)
T ss_dssp             TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence            34455567788999999999999999998888776544445444332 23345566664434444455677777777777


Q ss_pred             CCCC-ChhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537          233 KPQP-PFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (405)
Q Consensus       233 ~~~~-~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~  310 (405)
                      ...+ ......-....|+.|.+... ...-.....++..+...++.....+     +..++..--..+..=...-+.-|.
T Consensus       247 fa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~ele  321 (392)
T 2jak_A          247 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE  321 (392)
T ss_dssp             CCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHH
Confidence            6322 22222233455666665543 2223344455555555555444422     233444332222222223344444


Q ss_pred             HhhcCC-hhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 015537          311 NIVTGD-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (405)
Q Consensus       311 nl~~~~-~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~  353 (405)
                      .+...- +.....+ ...+...+..++.++ +.+|.+.|...+.
T Consensus       322 eiLe~~~~~~f~~i-~~~lF~~la~ci~S~-hfqVAErAL~~wn  363 (392)
T 2jak_A          322 EILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWN  363 (392)
T ss_dssp             HHHHTCCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHHHGGGG
T ss_pred             HHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-cHHHHHHHHHHhC
Confidence            444322 2222222 224667777888887 8888887765443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=88.46  E-value=14  Score=33.54  Aligned_cols=165  Identities=12%  Similarity=0.127  Sum_probs=100.4

Q ss_pred             chhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchh
Q 015537          149 SEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS  217 (405)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~  217 (405)
                      ..+...+. .+|+..|+.+|..           .+......++.||..+..........+...+++..+...+ .++++.
T Consensus        38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~  115 (386)
T 2bnx_A           38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  115 (386)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHH
T ss_pred             cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence            45555554 4567777776642           1457788999999999866665544555556677777777 788889


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC-C
Q 015537          218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-H  296 (405)
Q Consensus       218 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~  296 (405)
                      ++..++..|..+|......      |..+.++..+.               ++.        ..-+..-+..++..+. +
T Consensus       116 ~r~~vleLL~alc~~~~~~------G~~~~VL~Al~---------------~~~--------~~~e~~RF~~lv~~l~~~  166 (386)
T 2bnx_A          116 MMIDAAKLLSALCILPQPE------DMNERVLEAMT---------------ERA--------EMDEVERFQPLLDGLKSG  166 (386)
T ss_dssp             HHHHHHHHHHHHHTCCSST------THHHHHHHHHH---------------HHH--------HHHTSCTTHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHHcCCCCC------ChHHHHHHHHH---------------HHH--------HhCchhhHHHHHHHHHcC
Confidence            9999999999999864211      11222222221               110        0111233455666665 4


Q ss_pred             CCcchHHHHHHHHhHhhcCChh------hHHHHHhcCchHHHHHhhcCCCchhHH
Q 015537          297 PSPSVLIPALRTVGNIVTGDDM------QTQCVIEYQALPCLLNLLSGNYKKSIK  345 (405)
Q Consensus       297 ~~~~v~~~a~~~l~nl~~~~~~------~~~~~~~~g~l~~L~~ll~~~~~~~v~  345 (405)
                      .+.+.+..++..|..++.+.+.      .+..+...|+.+.+-.+=... ++.+.
T Consensus       167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~-~~~L~  220 (386)
T 2bnx_A          167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK  220 (386)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC-CHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-ChhHH
Confidence            4556777777777777766552      334556778888776665544 44444

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=86.79  E-value=9.2  Score=31.66  Aligned_cols=135  Identities=8%  Similarity=-0.062  Sum_probs=82.0

Q ss_pred             CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHH
Q 015537          212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (405)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L  290 (405)
                      .++.-+.+..++..+.......       ....++.+-.++.+ ++..+....+.+++.+....++.        +.+.+
T Consensus        65 ~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i  129 (220)
T 2b6c_A           65 QKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF  129 (220)
T ss_dssp             TSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred             cCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence            5555666666666665543211       12334444555544 45666666556666665444332        23567


Q ss_pred             HHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 015537          291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV  369 (405)
Q Consensus       291 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  369 (405)
                      ...+.+++.-++..|+.++  +..........     .++.+..++.++ +..|++.+.|+|..+...+++.....+..
T Consensus       130 ~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~~  200 (220)
T 2b6c_A          130 ALFYGAENFWNRRVALNLQ--LMLKEKTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMKE  200 (220)
T ss_dssp             HHHTTCSSHHHHHHHHHTT--TTCGGGCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHH--HHHHHCCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHhh
Confidence            7888888887777776544  22222222221     245555577777 99999999999999999999877666643

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=83.61  E-value=1.8  Score=34.16  Aligned_cols=74  Identities=9%  Similarity=0.001  Sum_probs=54.5

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~  146 (405)
                      +.+..+.+.|++.++.+|..|+..|-.+..........++....++..|+.++....++.++..++..+...+.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            45677888888899999999999888887654223334566677888888888763447888888887766544

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=83.55  E-value=10  Score=32.90  Aligned_cols=149  Identities=10%  Similarity=0.083  Sum_probs=89.7

Q ss_pred             cHHHHHhhhcCC------ChHHHHHHHHHHHHhccCChhHHHHHH-hcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCC
Q 015537          244 ALPALAHLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (405)
Q Consensus       244 ~l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  316 (405)
                      -+..+..+++++      |......++-.|..++..-....+.+- +..++..|+ +.....+.++..|.++||....++
T Consensus        23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN  101 (315)
T 3qml_C           23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN  101 (315)
T ss_dssp             HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence            333444555544      455677788888888755444444443 334455555 334456789999999999999999


Q ss_pred             hhhHHHHHhc--CchHHHHHhhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchh
Q 015537          317 DMQTQCVIEY--QALPCLLNLLSG----N--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFG  388 (405)
Q Consensus       317 ~~~~~~~~~~--g~l~~L~~ll~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~  388 (405)
                      +.....+.+.  .++..+..-|..    +  ....+.+.-..+|.-|...+..    + ....+..|.+++... ..  +
T Consensus       102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~-~~--d  173 (315)
T 3qml_C          102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERN-NK--D  173 (315)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHT-TT--C
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccC-CC--C
Confidence            9888877653  455555544433    1  1346677777788888665421    1 144557777777643 11  2


Q ss_pred             hhHHHHHHHHHhh
Q 015537          389 AIIYKLAIWLCLV  401 (405)
Q Consensus       389 ~~vr~~A~~al~n  401 (405)
                      +.+|..+.-.+..
T Consensus       174 ~~~k~Kvl~li~d  186 (315)
T 3qml_C          174 KQLQIKVLELISK  186 (315)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4566666555443

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=82.85  E-value=1.5  Score=33.65  Aligned_cols=72  Identities=14%  Similarity=0.093  Sum_probs=51.8

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCch-HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~  146 (405)
                      +.+..+.+.|++.++.+|..|+..|-.+.... .... .++....++..|+.+++..+ +.++..++..+...+.
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc-G~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNC-GKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc-CHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence            45677777788888889999888887776543 3333 34556677888888887666 8888888877766543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=80.64  E-value=2.5  Score=32.65  Aligned_cols=74  Identities=8%  Similarity=-0.069  Sum_probs=55.8

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhc
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-----EDYPQLQFEAAWALTNIAS  146 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~-----~~~~~~~~~a~~~L~ni~~  146 (405)
                      +.+..+.+.|++.++.+|..|+..|-.+......+...++....++..|+.++..     ..++.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4577888888999999999999999888765423334556677889999999874     1237889888888777654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=80.05  E-value=3.1  Score=32.17  Aligned_cols=74  Identities=7%  Similarity=-0.032  Sum_probs=55.5

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhc
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-----DYPQLQFEAAWALTNIAS  146 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~-----~~~~~~~~a~~~L~ni~~  146 (405)
                      +.+..+.+.+++.++.++..|+..|-.+......+...++....++..|+.++...     .++.++..++..+...+.
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            45778888888999999999999888886654223335566778899999999642     237889888888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	7e-81
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-10
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-08
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	4e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-49
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	9e-13
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-09
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-07
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-35
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-20
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-10
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-19
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-10
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	9e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	9e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-04

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  255 bits (651), Expect = 7e-81
 Identities = 190/372 (51%), Positives = 239/372 (64%), Gaps = 12/372 (3%)

Query: 12  RRNKYKVA--VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQN-------QQPLAND 62
           RR  +K      ADE RRRR+   VE+RK KR+E+L K+R             +   +  
Sbjct: 6   RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 65

Query: 63  VNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV 122
            +    ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR V
Sbjct: 66  ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 125

Query: 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
           EF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WA
Sbjct: 126 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 185

Query: 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQV 241
           LGN+AGDS   RD VL    + P+L  L    K S++R ATWTLSN CRGK PQP +  V
Sbjct: 186 LGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV 244

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           S ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V
Sbjct: 245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 304

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361
             PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN E
Sbjct: 305 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTE 363

Query: 362 QIQVIMHVHAFS 373
           QIQ ++  +   
Sbjct: 364 QIQAVIDANLIP 375

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 7/241 (2%)

Query: 76  PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQF 135
             ++    SN   +    T     L   ++  P   V+   +    +  L+     +   
Sbjct: 207 EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL--PTLAKLIYSMDTETLV 264

Query: 136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD 195
           +A WA++ ++ G  E  + VID       V+LL   S  V+  A+ A+GNI   +     
Sbjct: 265 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 324

Query: 196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR-GKPQPPFDQVSPALPALAHLIHS 254
           +V++ G L  L   L+  PK ++ + A WT+SN       Q      +  +P L  L+  
Sbjct: 325 VVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 383

Query: 255 NDDEVLTDACWALSYLSDGTNDK---IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
            + +   +ACWA+S  S G   +   I+ ++  G    L + L      ++   L  + N
Sbjct: 384 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 443

Query: 312 I 312
           I
Sbjct: 444 I 444

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 3/151 (1%)

Query: 83  WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALT 142
            S++S +      +    +        + VI +GV+P     LL      ++ EA W ++
Sbjct: 297 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL-LLSSPKENIKKEACWTIS 355

Query: 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV--LSQ 200
           NI +G +E  + VID   +P  VKLL       +++A WA+ N +    +  D++  L  
Sbjct: 356 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS 415

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
            G +  L  L       ++      L N  +
Sbjct: 416 QGCIKPLCDLLEIADNRIIEVTLDALENILK 446

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 43/139 (30%)

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
           + Q+   LP +   ++S+D +    A       LS      I  VI+AGV PRL EF+  
Sbjct: 71  YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 130

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
             P                                            ++ EA W ++NI 
Sbjct: 131 NQPE------------------------------------------MLQLEAAWALTNIA 148

Query: 357 AGNREQIQVIMHVHAFSII 375
           +G   Q +V++   A  + 
Sbjct: 149 SGTSAQTKVVVDADAVPLF 167

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  170 bits (431), Expect = 3e-49
 Identities = 156/330 (47%), Positives = 206/330 (62%), Gaps = 6/330 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           FE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    R
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 195 DLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALA 249
           DLV+  G + PLLA L            LRN TWTLSN CR K   PP D V   LP L 
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +
Sbjct: 195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 254

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV 369
           GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++ 
Sbjct: 255 GNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 370 HAFSIIVAFFFMFLHFFFGAIIYKLAIWLC 399
                +V               + +  +  
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTS 343

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (162), Expect = 9e-13
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 7/186 (3%)

Query: 158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ-LNGQPKL 216
           + +V   VK + S + + + QA  A   +     +     + + GL+P     L      
Sbjct: 12  NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
            +   + W L+N   G  +     V   A+PA   L+ S    +   A WAL  ++   +
Sbjct: 72  PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131

Query: 276 DKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP 330
                VI+ G    L   L        +   L     T+ N+    +         Q LP
Sbjct: 132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191

Query: 331 CLLNLL 336
            L+ LL
Sbjct: 192 TLVRLL 197

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 76  PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQF 135
            V  + + +  + +Q E T     + +  R   I++V+  G+VP  V  +L +   + Q 
Sbjct: 275 AVFPSLLTNPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVG-VLSKADFKTQK 332

Query: 136 EAAWALTNIAS-GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA------G 188
           EAAWA+TN  S GT E    ++  G +   + LL +    + +  + A+ NI       G
Sbjct: 333 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 392

Query: 189 DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           ++ +   ++   GGL   +  L      S+ + +   +  +
Sbjct: 393 ETEKLSIMIEECGGL-DKIEALQRHENESVYKASLNLIEKY 432

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 9/151 (5%)

Query: 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN 185
           L      +Q EA W ++NI +G  +  + V++HG VP  V +L       +++A WA+ N
Sbjct: 281 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 340

Query: 186 IA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--- 241
              G +      ++  G + PL+  L+ +    +++     +SN  +   +    +    
Sbjct: 341 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQAAEKLGETEKLSI 399

Query: 242 ----SPALPALAHLIHSNDDEVLTDACWALS 268
                  L  +  L    ++ V   +   + 
Sbjct: 400 MIEECGGLDKIEALQRHENESVYKASLNLIE 430

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 2e-35
 Identities = 42/315 (13%), Positives = 82/315 (26%), Gaps = 29/315 (9%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  AL N+   S   +     Q G+   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 238 FDQVSPALPALAHLI---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVI 282
                        +I                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--- 339
            +G+   L  ++ +   +           +    ++  +   E       L   + N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 340 ----------YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGA 389
                         +              N +    + H  A    +             
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 390 IIYKLAIWLCLVTCC 404
                   L      
Sbjct: 303 ACAGALQNLTASKGL 317

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 6e-13
 Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 14/225 (6%)

Query: 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202
            + +   +      +            + SD +              +P+    +     
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD------QVSPALPALAHLIHSND 256
           +   L  +    K + L      L N    K                 LP +A L+ S +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------PSPSVLIPALRTVG 310
            +V+      LS +S   +  +  V+   VFP +   L         S  +L  A  TV 
Sbjct: 345 SDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           N++       +       L  ++NL   +      + A   +S++
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 7e-12
 Identities = 19/193 (9%), Positives = 48/193 (24%), Gaps = 15/193 (7%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEV 259
           G  +P   Q              + + + C               +  L  L+ S +  V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319
              A  AL  L   +                   L     + +   L  +   ++  D  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 320 TQCVIEYQALPCLLNLLSGNYK--------------KSIKKEACWTVSNITAGNREQIQV 365
            + +I          ++                     +   A   + N+++ +  +  +
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 366 IMHVHAFSIIVAF 378
             +      ++A+
Sbjct: 181 RNYSGLIDSLMAY 193

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 6e-10
 Identities = 24/186 (12%), Positives = 54/186 (29%), Gaps = 14/186 (7%)

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR---- 114
              +    G     + +   +  +  +      E      + L+  +      + +    
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328

Query: 115 -SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL----- 168
               +P+    L +     +    A  L+N++         V+ +   P   +LL     
Sbjct: 329 KEKGLPQIARLL-QSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTG 385

Query: 169 -YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
             S S+D+   A + + N+    P+      S   L  ++              A   LS
Sbjct: 386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445

Query: 228 NFCRGK 233
           +    K
Sbjct: 446 DMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (220), Expect = 5e-20
 Identities = 32/196 (16%), Positives = 62/196 (31%)

Query: 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218
            A+P   KLL      V  +A   +  ++        ++ S   +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278
            R    TL N    +        S  +PAL  ++ S  D VL  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338
            AV  AG   ++   L   +   L      +  +  G+      ++       L+N++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 339 NYKKSIKKEACWTVSN 354
              + +       +  
Sbjct: 197 YTYEKLLWTTSRVLKV 212

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (193), Expect = 1e-16
 Identities = 53/368 (14%), Positives = 104/368 (28%), Gaps = 49/368 (13%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQL 133
           +P +   +   D  V  +      +L   E       ++RS  +V   V  +   +  + 
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
               A  L N++    E    +   G +P  VK+L SP D V   A+  L N+       
Sbjct: 77  ARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 194 RDLVLSQGGLVPLLAQ------------------------------------------LN 211
           +  V   GGL  ++A                                           + 
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271
                 +L   +  L          P    +  + AL   +      ++ +  W L  LS
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

Query: 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC 331
           D    +       G+   L + L     +V+  A   + N+   +      V +   +  
Sbjct: 256 DAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312

Query: 332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAII 391
           L+  +     +    E             ++ ++  +       +      LH      +
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372

Query: 392 YKLAIWLC 399
            K  + L 
Sbjct: 373 IKATVGLI 380

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 7e-12
 Identities = 31/199 (15%), Positives = 59/199 (29%), Gaps = 23/199 (11%)

Query: 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
               +P  V+ L    +  L       + N+A   + H  +  + GA+P  V+LL     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQ 411

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           D + +                               + G     ++   T  L    R  
Sbjct: 412 DTQRRTSMGGTQ---------------------QQFVEGVRMEEIVEGCTGALHILARDV 450

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                 +    +P    L++S  + +   A   L  L+    +  +A+   G    L E 
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTEL 509

Query: 294 LMHPSPSVLIPALRTVGNI 312
           L   +  V   A   +  +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 7e-11
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L+ +      +   R+ +     +F+      ++      AL  +A     +  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +P+FV+LLYSP ++++  A   L  +A D     + + ++G     L +L       + 
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGA-TAPLTELLHSRNEGVA 518

Query: 220 RNATWTLSN 228
             A   L  
Sbjct: 519 TYAAAVLFR 527

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (144), Expect = 2e-10
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
             +     +P FV+ LL      +Q  AA  L  +A    E  + +   GA     +LL+
Sbjct: 454 IVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLH 511

Query: 170 SPSDDVREQAVWALGNIA 187
           S ++ V   A   L  ++
Sbjct: 512 SRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.9 bits (211), Expect = 1e-19
 Identities = 38/259 (14%), Positives = 81/259 (31%), Gaps = 7/259 (2%)

Query: 103 IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162
           +E+      V+   + P   E     D  Q +  A   L ++              G   
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCENMDNAADFCQLSGMHL 62

Query: 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222
           +  + L + +  +R +A   +G  + +    ++ VL  G L  LL  L+     ++   A
Sbjct: 63  LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 122

Query: 223 TWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281
            + +S   R +               L   +     ++   + + L  L  G  +    +
Sbjct: 123 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 182

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-----YQALPCLLNLL 336
              G+  +L   +           L  + ++VT      +   E      + L     LL
Sbjct: 183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 242

Query: 337 SGNYKKSIKKEACWTVSNI 355
             + +   + E C  +   
Sbjct: 243 QQHEEYQEELEFCEKLLQT 261

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 48/287 (16%), Positives = 84/287 (29%), Gaps = 29/287 (10%)

Query: 75  LPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           L  ++ G+   +    V+   T      L   ++   +E  R  ++    E     D  +
Sbjct: 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TR 231

Query: 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192
           ++  A   L  I S   ++ +  +      I ++ + S  D+V  Q +    N+  +   
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291

Query: 193 C---RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-------------- 235
                     QG      ++   +  L  L                              
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 351

Query: 236 ------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289
                    D V   LP +   I + D      A  A   + +G        +     P 
Sbjct: 352 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 411

Query: 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
           L E +  PS  V   A  TVG I    ++  +  I    L  LL  L
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCL 455

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 34/248 (13%), Positives = 80/248 (32%), Gaps = 25/248 (10%)

Query: 109  IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
              +   + V     +         ++  A  +L  +      H  +        + ++  
Sbjct: 807  CPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH----HIDLSGQLELKSVILEAF 862

Query: 169  YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-LRNATWTLS 227
             SPS++V+  A +ALG+I+  +            L  +L ++  QPK    L ++   + 
Sbjct: 863  SSPSEEVKSAASYALGSISVGNL--------PEYLPFVLQEITSQPKRQYLLLHSLKEII 914

Query: 228  NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287
            +        P+  V      L       ++         L         K+  +    + 
Sbjct: 915  SSASVVGLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLL 964

Query: 288  PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347
            PRL  +L+  S       +  V   ++        +++   +   L  L      ++++ 
Sbjct: 965  PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP-DLNVRRV 1022

Query: 348  ACWTVSNI 355
            A  T ++ 
Sbjct: 1023 ALVTFNSA 1030

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 36/240 (15%), Positives = 76/240 (31%), Gaps = 17/240 (7%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              +F A   L       S       +   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPAL 248
            + ++  +    +V  L       K  +   ++  L       P         +     +
Sbjct: 74  SKVKEYQVET--IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 249 AHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
              + S      D  V  +A   ++ +       +     + +   L   L  P  +V  
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRK 190

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
             +  +G++V          ++   +  LL+ LS N   S  +     ++ I+     +I
Sbjct: 191 RTIIALGHLVMS--CGNIVFVDL--IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 10/137 (7%)

Query: 125  LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
                     +   A  L  +     E          +P     L S S   R   V A+ 
Sbjct: 936  HCECAEEGTRNVVAECLGKLTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVK 987

Query: 185  NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
                D P+  D +L     +    +    P L++ R A  T ++    KP    D +   
Sbjct: 988  FTISDHPQPIDPLLKN--CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045

Query: 245  LPALAHLIHSNDDEVLT 261
            LP L +      + +  
Sbjct: 1046 LPHLYNETKVRKELIRE 1062

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 9/156 (5%)

Query: 213 QPKLSMLRNATWTLSNFCR--GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270
            P    +  A   LS      G         S  L  +   +     EV   +   L  L
Sbjct: 633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 692

Query: 271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV--TGDDMQTQCVIEYQA 328
           +      ++  I     P L   L     SV   A   +G I    G +MQ         
Sbjct: 693 TKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP---MV 748

Query: 329 LPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQI 363
           L  L+ +++  N  K++ +    T+  +     +++
Sbjct: 749 LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 784

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 50/305 (16%), Positives = 89/305 (29%), Gaps = 20/305 (6%)

Query: 84  SNDSGVQYECTTQFRKLLS---IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWA 140
           S D   +       +  +          + + I+S  +       + +  P ++      
Sbjct: 57  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 111

Query: 141 LTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
           +T IAS              +P    LL S   +  E A  AL  I  DS    D  +  
Sbjct: 112 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 167

Query: 201 GG---LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257
                ++P   Q        +  +A   ++ F   + Q     +      L  L    + 
Sbjct: 168 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           EV  + C AL  L +   D++   +   +   + +       +V   AL      +T  +
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAE 283

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQVIMHVHAFSIIV 376
                 +  + LP L+ +L    K S                     Q I      S  V
Sbjct: 284 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTV 343

Query: 377 AFFFM 381
           A    
Sbjct: 344 AQQHD 348

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 9e-05
 Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 16/180 (8%)

Query: 92  ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151
                    L+      IE+++    +   +   +++  P+++  +   L ++     +H
Sbjct: 640 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 699

Query: 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA-----GDSPRCRDLVLSQGGLVPL 206
            K  I    +PI    L      V   A WA+G I+        P    ++     LV +
Sbjct: 700 VKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL---HQLVEI 755

Query: 207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQ---PPFDQVSPALPALAHLIHSNDDEVLTDA 263
           +         ++L N   T+       PQ   P   Q          L +  D+E    A
Sbjct: 756 IN--RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPW--CTSLRNIRDNEEKDSA 811

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 30/227 (13%), Positives = 63/227 (27%), Gaps = 6/227 (2%)

Query: 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA--VPIFVKLL 168
            V R  ++P  +  L    +          +  + +      + +I +    +P  ++ L
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 445

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
                 VR    W L   A            +  +  LL ++    K  +   A    + 
Sbjct: 446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFAT 504

Query: 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVF 287
                       ++  L  L         + L     A+  L+D     + +      + 
Sbjct: 505 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 564

Query: 288 PRLAEFL--MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL 332
           P L +    +      L P L  + ++ T          E     C+
Sbjct: 565 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCV 611

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 26/279 (9%), Positives = 62/279 (22%), Gaps = 39/279 (13%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154
           ++   L +  +    +E+ R          LL +     +  +A  L             
Sbjct: 7   SKEYGLYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG--------- 47

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
                AV + ++     +   R+   + LG I                   L        
Sbjct: 48  --GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDK 99

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACW-------AL 267
              +   A  + +  C+  P      V  +         +                   L
Sbjct: 100 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPL 159

Query: 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327
                   +       A                 +         +     +      + +
Sbjct: 160 LINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 219

Query: 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVI 366
            L  L + L    K ++  +       +  G++  + V+
Sbjct: 220 VLSVLCDELK---KNTVYDDIIEAAGEL--GDKTLLPVL 253

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 139 WALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL 198
            A +N+     +  K       +P  + +   P+   R   ++ +  ++    +  D+  
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DITT 517

Query: 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE 258
               ++P + ++ G P  ++  N   +L                   P L  L    D +
Sbjct: 518 KH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE--VKPILEKLTQDQDVD 573

Query: 259 VLTDACWALSYLS 271
           V   A  AL+ LS
Sbjct: 574 VKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 12/176 (6%)

Query: 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221
           P  V+L       VR   +  +  +AG              L  L          ++   
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREA 460

Query: 222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281
           AT  L        +         +P +  +    +        + ++ LS+     I   
Sbjct: 461 ATSNLKKLVEKFGKEWAHAT--IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--- 515

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
               + P +      P  +V     +++  I     +     ++ +  P L  L  
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG---PILDNSTLQSEVKPILEKLTQ 568

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 12/194 (6%)

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
              +  L  +   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           A   L  +     +      +   ++P +  ++G P         + ++       Q   
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
            +    LP +  +       V  +   +L  +    ++     +++ V P L +      
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 299 PSVLIPALRTVGNI 312
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
           +++    ++P  +  +  +    ++F  A +L  I       T   +     PI  KL  
Sbjct: 513 QDITTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVKPILEKLTQ 568

Query: 170 SPSDDVREQAVWALGNIA 187
               DV+  A  AL  ++
Sbjct: 569 DQDVDVKYFAQEALTVLS 586

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.87
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.86
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.51
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.48
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.48
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.46
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.44
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.38
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.34
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.3
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.2
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.2
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.05
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.0
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.0
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.85
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.79
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.78
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.62
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.49
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.44
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.45
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.99
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.69
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.68
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.58
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.57
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	96.41
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.25
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	95.37
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.95
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	86.24
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	85.49
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	84.79
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	84.79
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	81.96

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.6e-55  Score=421.99  Aligned_cols=389  Identities=50%  Similarity=0.744  Sum_probs=338.3

Q ss_pred             CchHhhhhcCC-C-CCchHHhhhhhHHHHHHHHHhhhHHHHhhhhccccCCCCCccC-------CCCCchhhhhcCHHHH
Q 015537            8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND-------VNAPGTAKKLENLPVM   78 (405)
Q Consensus         8 ~~~~r~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l   78 (405)
                      .+++|+++||+ + .+++|+||||+++.++|||+||++.++|||+.....+......       ..........+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (503)
T d1wa5b_           2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   81 (503)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence            57899999999 6 4999999999999999999999999999997543322211110       0111112233579999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhC
Q 015537           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (405)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~  158 (405)
                      ++.+.+++...+..|+..++++++.+.+++++.+++.|++|.|+++|+.+.++.++..|+|+|+|++.+++..+..+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999999999999888788999999999999999999876658899999999999999989999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC-CCCC
Q 015537          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (405)
Q Consensus       159 g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~  237 (405)
                      |+++.++.+|.+++.++++.++|+|+||+.+++.+++.+.+.|++++++.++ .+.+..+++.++|++.+++.+. +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6778889999999999999886 5566


Q ss_pred             hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh
Q 015537          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (405)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  317 (405)
                      .....+++|.+..++.++|++++..++|++.+++....+....+++.|+++.++.++.++++.++.+++.+++|++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHH
Q 015537          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIW  397 (405)
Q Consensus       318 ~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~  397 (405)
                      ..+..+++.|+++.|..++.++ ++.++++++|+|+|+++++++++..+++.|+++.++.++.+..     +.++++|+|
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~-----~~v~~~a~~  394 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-----YKTKKEACW  394 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-----HHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCC-----hhHHHHHHH
Confidence            9999999999999999999998 9999999999999999999999999999999999999997653     469999999


Q ss_pred             HHhhhc
Q 015537          398 LCLVTC  403 (405)
Q Consensus       398 al~n~~  403 (405)
                      +|+|++
T Consensus       395 ~l~nl~  400 (503)
T d1wa5b_         395 AISNAS  400 (503)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999986

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.8e-39  Score=302.98  Aligned_cols=326  Identities=49%  Similarity=0.784  Sum_probs=298.9

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~  152 (405)
                      .+++.+++.++++|++.|..|+..++++++...+++++.+++.|++|.|+++|++++++.++..|+|+|++++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            46899999999999999999999999998877677889999999999999999866558899999999999999988999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCC----chhHHHHHHHHHHH
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSN  228 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~----~~~~~~~a~~~l~~  228 (405)
                      ..+++.|+++.|+.+|.++++.+++.++|+|+|++.+++..+..+.+.|+++.++.++....    .....+.++|++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995433    23567889999999


Q ss_pred             hhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHH
Q 015537          229 FCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (405)
Q Consensus       229 l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  307 (405)
                      ++.+. +........+++|.+..+++++|++++..++|++.+++..+.+....+...|+++.++.++.++++.++..+++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99987 44455566889999999999999999999999999999988888888889999999999999999999999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       308 ~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      +|++++.+++.....+++.|+++.+..++.++ ++.+++.++|+|+|++.++++....+.+.|++|.+++++.+.+    
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~----  327 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD----  327 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSC----
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccC----
Confidence            99999999998889999999999999999998 9999999999999999999998999999999999999997652    


Q ss_pred             hhhHHHHHHHHHhhhcc
Q 015537          388 GAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       388 ~~~vr~~A~~al~n~~~  404 (405)
                       +.+|.+|+|+|+|+++
T Consensus       328 -~~v~~~a~~~l~nl~~  343 (434)
T d1q1sc_         328 -FKTQKEAAWAITNYTS  343 (434)
T ss_dssp             -HHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHh
Confidence             4699999999999874

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=272.55  Aligned_cols=321  Identities=23%  Similarity=0.313  Sum_probs=283.6

Q ss_pred             cCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      +.+|.|++.+++ .++.+|..|+++|.+++++. ......+.+.|+++.++.+|.+++ ++++..|+|+|+|++..+++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            579999999986 46789999999999998764 555677889999999999999988 899999999999999998999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      +..+.+.|+++.|+.++.+.++.++..++|+|.|++.............++++.++.++ .+.+.+++..++|++.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999976554445555677899999998 78899999999999999998


Q ss_pred             CCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537          232 GKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (405)
Q Consensus       232 ~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~  310 (405)
                      +.+.. ......++++.++.++.++++.+...++.++++++.+.+.....+++.|+++.+..++.++++.++..++|+|+
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            75322 22333789999999999999999999999999999998888888999999999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       311 nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      |++.+++.....+++.|+++.++.++.++ +..++++|+|+|+|++.   ..++.+..+++.|+++.|+++|...+    
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d----  430 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD----  430 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC----
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCC----
Confidence            99999999999999999999999999999 99999999999999986   34677889999999999999997653    


Q ss_pred             hhhHHHHHHHHHhhh
Q 015537          388 GAIIYKLAIWLCLVT  402 (405)
Q Consensus       388 ~~~vr~~A~~al~n~  402 (405)
                       +++...+..+|.|+
T Consensus       431 -~~~~~~~L~~l~~l  444 (503)
T d1wa5b_         431 -NRIIEVTLDALENI  444 (503)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHH
Confidence             25666666666653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-32  Score=260.94  Aligned_cols=323  Identities=24%  Similarity=0.365  Sum_probs=284.0

Q ss_pred             hcCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537           72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        72 ~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      .+.+|.|++.|++ +++.+|..|+++|.++++.. ......+++.|++|.|+.+|.+++ +.++..|+|+|+|++.++++
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~  132 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  132 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchH
Confidence            3679999999975 46789999999999997654 556778899999999999999888 99999999999999998889


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHH
Q 015537          151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (405)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~~-----~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~  225 (405)
                      .+..+.+.|+++.++.++...+     ......++|++.+++...+.........++++.+..++ .+.+++++..++|+
T Consensus       133 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~  211 (434)
T d1q1sc_         133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  211 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhh
Confidence            9999999999999999998743     34567889999999987665555555666788888888 78899999999999


Q ss_pred             HHHhhcCCCCC-ChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHH
Q 015537          226 LSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (405)
Q Consensus       226 l~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  304 (405)
                      +.+++...+.. ......++++.++.++.+++++++..++++|.+++.++++....+++.|+++.++.+|.+++++++..
T Consensus       212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~  291 (434)
T d1q1sc_         212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  291 (434)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHH
Confidence            99999875322 22334789999999999999999999999999999988888888999999999999999999999999


Q ss_pred             HHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhccc
Q 015537          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIVAFFFMFL  383 (405)
Q Consensus       305 a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~lL~~~~  383 (405)
                      ++++|++++.+.......+.+.|+++.++.++.++ ++.++..|+|+|+|++. ++++.+..+.+.|+++.|++++...+
T Consensus       292 a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d  370 (434)
T d1q1sc_         292 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  370 (434)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSC
T ss_pred             HHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCC
Confidence            99999999998888888899999999999999999 99999999999999987 57888889999999999999997653


Q ss_pred             ccchhhhHHHHHHHHHhhhc
Q 015537          384 HFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       384 ~~~~~~~vr~~A~~al~n~~  403 (405)
                           ++++..|.++|.|++
T Consensus       371 -----~~~~~~~l~~l~~ll  385 (434)
T d1q1sc_         371 -----TKIIQVILDAISNIF  385 (434)
T ss_dssp             -----HHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHH
Confidence                 468999999999875

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.7e-30  Score=248.49  Aligned_cols=319  Identities=21%  Similarity=0.195  Sum_probs=274.4

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~-~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      ..+|.|++.|+++|..++..|+..+.++...  +.....++. .|+++.|+.+|.+.++++++..|+++|.+++.+ ++.
T Consensus        17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~--~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~   93 (529)
T d1jdha_          17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK--EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REG   93 (529)
T ss_dssp             CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh
Confidence            4689999999999999999999999999643  344444544 578999999998765589999999999999875 888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      +..+++.|++|.|+.+|++++++++..++++|+|++.+.+..+..+.+.|++++|+.++ +++++.++..+++++.+++.
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999999888899999999999999999 78889999999999999998


Q ss_pred             CCC-CCChhhhhccHHHHHhhhcCC-ChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHH
Q 015537          232 GKP-QPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (405)
Q Consensus       232 ~~~-~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l  309 (405)
                      ..+ ........++++.++.++.+. ++.++..+++++.+++.. ++....+++.|+++.++.++.+++..++..+++++
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l  251 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL  251 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHH
Confidence            753 233334478899999999654 578999999999999864 45567789999999999999999999999999999


Q ss_pred             hHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhh
Q 015537          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGA  389 (405)
Q Consensus       310 ~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~  389 (405)
                      ++++......   ....|+++.|+.++.++ ++.++..++++|+|++.++++....+.+.|+++.|+.++....+.   +
T Consensus       252 ~~ls~~~~~~---~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~---~  324 (529)
T d1jdha_         252 RNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR---E  324 (529)
T ss_dssp             HHHHTTCTTC---SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTC---H
T ss_pred             Hhccccccch---hhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcc---h
Confidence            9998544321   22347899999999998 999999999999999999999888888999999999998654433   4


Q ss_pred             hHHHHHHHHHhhhc
Q 015537          390 IIYKLAIWLCLVTC  403 (405)
Q Consensus       390 ~vr~~A~~al~n~~  403 (405)
                      .++..|+++|.|++
T Consensus       325 ~~~~~a~~aL~~l~  338 (529)
T d1jdha_         325 DITEPAICALRHLT  338 (529)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhhccc
Confidence            78999999999986

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-28  Score=238.89  Aligned_cols=322  Identities=15%  Similarity=0.173  Sum_probs=276.9

Q ss_pred             cCHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 015537           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (405)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~  151 (405)
                      +.++.++..|.+ ++++++..|+.+|.++.. + .+....+++.|++|.|+.+|.+++ +.++..|+++|+|++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~-~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            357899999975 678999999999999853 3 566778999999999999999988 999999999999999998888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      +..+.+.|+++.|+.+|+++++.++..++++|++++..++..+..+...|++++++.++....+..++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999999998888899999999999999999777788899999999999997


Q ss_pred             CCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhH
Q 015537          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n  311 (405)
                      ...........++++.|..++.+++++++..+++++.+++......   ....|+++.|+.++.+++..++..++++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            6443333344789999999999999999999999999998654432   2234778999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCC---HHHHHHHHHhCcHHHHHHHHhcccccch
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGN---REQIQVIMHVHAFSIIVAFFFMFLHFFF  387 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~---~~~~~~l~~~~~i~~L~~lL~~~~~~~~  387 (405)
                      ++.+++.....+.+.|+++.++.++.. +..+.++..++++|.|++.+.   ......+...|+++.|+.++....+.  
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~--  370 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW--  370 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH--
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchH--
Confidence            999988888889999999999998853 226788999999999998643   22334556899999999999875444  


Q ss_pred             hhhHHHHHHHHHhhhcc
Q 015537          388 GAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       388 ~~~vr~~A~~al~n~~~  404 (405)
                        .+++.++++|.|++.
T Consensus       371 --~~~~~~~~~l~~l~~  385 (529)
T d1jdha_         371 --PLIKATVGLIRNLAL  385 (529)
T ss_dssp             --HHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHhhcch
Confidence              688899999999864

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.7e-26  Score=215.10  Aligned_cols=321  Identities=17%  Similarity=0.165  Sum_probs=248.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      .||.|+++|+++++++|..|+.+|.+++..+ ++....+.+.|++|.|+++|++++ +.++..|+++|+|++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            5899999999999999999999999997554 677888999999999999999988 99999999999999998899999


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh---------------hCCCchh
Q 015537          154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---------------NGQPKLS  217 (405)
Q Consensus       154 ~~~~~g~i~~L~~lL~~-~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l---------------~~~~~~~  217 (405)
                      .+.+.|+++.|+.++.+ .++.++..++++|++++.+... +...... +++.++..+               ....+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999998875 6889999999999999987653 3333333 333333332               1334667


Q ss_pred             HHHHHHHHHHHhhcCCCCCChh-h--------------------------------------------------------
Q 015537          218 MLRNATWTLSNFCRGKPQPPFD-Q--------------------------------------------------------  240 (405)
Q Consensus       218 ~~~~a~~~l~~l~~~~~~~~~~-~--------------------------------------------------------  240 (405)
                      ++..+++++.+++......... .                                                        
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            7777777777665432100000 0                                                        


Q ss_pred             ------------------------------------------hhccHHHHHhhhcC-CChHHHHHHHHHHHHhccCChh-
Q 015537          241 ------------------------------------------VSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTND-  276 (405)
Q Consensus       241 ------------------------------------------~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~-  276 (405)
                                                                ..++++.++.++.. .++.+...+.+++..++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                                      01233444444433 3567777888888888765432 


Q ss_pred             ----HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCC-----CchhHHHH
Q 015537          277 ----KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKE  347 (405)
Q Consensus       277 ----~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~-----~~~~v~~~  347 (405)
                          ....+.+.|+++.++.+|.++++.++..+++++++++.... ... .+..++++.++.++...     .+..++..
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~-~i~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHH-HHHHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence                22334567999999999999999999999999999986543 333 34457889999998653     14579999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhcc
Q 015537          348 ACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTCC  404 (405)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~~  404 (405)
                      ++++|.|++.++++..+.+++.|+++.|+.++.+..+.    .+++.|+++|+|++.
T Consensus       397 a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~----~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP----KAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCH----HHHHHHHHHHHHHHc
Confidence            99999999999999899999999999999999876544    799999999999875

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-23  Score=197.46  Aligned_cols=284  Identities=18%  Similarity=0.197  Sum_probs=219.4

Q ss_pred             CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 015537          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (405)
Q Consensus       116 g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~  195 (405)
                      +.||.|+++|++++ ++++..|+++|+|+|.++++.+..+.+.|+||.|+.+|++++++++..|+++|+||+.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999999899999999999999999999999999999999999999999998999


Q ss_pred             HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhh----------------cCCChHH
Q 015537          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----------------HSNDDEV  259 (405)
Q Consensus       196 ~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll----------------~~~d~~v  259 (405)
                      .+.+.|+++.++.++....+..++..+++++.+++..... ........++.++..+                ...++.+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            9999999999999997778999999999999999987532 2233333444433322                3456889


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC--------------------------------------------
Q 015537          260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--------------------------------------------  295 (405)
Q Consensus       260 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~--------------------------------------------  295 (405)
                      +..+++++.+++..++.....+...|+++.++.++.                                            
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            999999999887655443333333344444443321                                            


Q ss_pred             -------------------------------------------------------CCCcchHHHHHHHHhHhhcCChh--
Q 015537          296 -------------------------------------------------------HPSPSVLIPALRTVGNIVTGDDM--  318 (405)
Q Consensus       296 -------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~~--  318 (405)
                                                                             ..++.++..+++++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                                                   12233456677778887755432  


Q ss_pred             ---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhccccc-chhhhHHHH
Q 015537          319 ---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHF-FFGAIIYKL  394 (405)
Q Consensus       319 ---~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~-~~~~~vr~~  394 (405)
                         ....+.+.|+++.|+.++.++ ++.++..++++++|++.. ++. +..+..++++.|+.+|...... .....++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~-~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLL-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGG-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhH-HHHHHHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               234455779999999999999 999999999999999865 333 3344567899999999765433 123469999


Q ss_pred             HHHHHhhhcc
Q 015537          395 AIWLCLVTCC  404 (405)
Q Consensus       395 A~~al~n~~~  404 (405)
                      |+++|+|++.
T Consensus       397 a~~~L~~l~~  406 (457)
T d1xm9a1         397 ACYTVRNLMA  406 (457)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.2e-21  Score=167.82  Aligned_cols=195  Identities=14%  Similarity=0.133  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 015537          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (405)
Q Consensus       131 ~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~  209 (405)
                      .+.+..|+.+|.+++.+ .++...+...|+++.++. ++.+++++++..|+++|++++.+++.++..+.+.|++++|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            67899999999999976 778888999999999886 7888999999999999999999999999999999999999999


Q ss_pred             hhCCCchhHHHHHHHHHHHhhcCCCCCC-hhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH
Q 015537          210 LNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (405)
Q Consensus       210 l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  288 (405)
                      +....++.++..+++++++++.+.+... .....++++.|+.+++++++.++..++++|.+++..+++....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9777889999999999999999874333 334588999999999999999999999999999988888888999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhc
Q 015537          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (405)
Q Consensus       289 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~  326 (405)
                      .|+.+|.++++.++..++++|++++..++.........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            99999999999999999999999998887766655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-20  Score=165.79  Aligned_cols=198  Identities=12%  Similarity=0.105  Sum_probs=175.3

Q ss_pred             CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChh-hhhccHHHH
Q 015537          170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPAL  248 (405)
Q Consensus       170 ~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~L  248 (405)
                      +.+.+.+..|+.+|.+++.+ ...+..+...|++++++..+.++++++++..++++|++++.+.+..... ...+++|.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            34677899999999999965 4467778899999999986658899999999999999999986543333 337999999


Q ss_pred             HhhhcC-CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcC
Q 015537          249 AHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ  327 (405)
Q Consensus       249 ~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g  327 (405)
                      +.++.+ .++.++..+++++++++.+++.....+...|+++.|+.+|.+++..++..++++|++++.+++.....+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            999964 6789999999999999999998888899999999999999999999999999999999999988889999999


Q ss_pred             chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 015537          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV  369 (405)
Q Consensus       328 ~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  369 (405)
                      +++.|+.++.++ ++.+++.|+|+|++|+..+++.+......
T Consensus       187 ~v~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         187 MVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             hHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            999999999998 99999999999999999988888777643

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-12  Score=126.19  Aligned_cols=295  Identities=15%  Similarity=0.127  Sum_probs=216.9

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--CchhH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TSEHT  152 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~--~~~~~  152 (405)
                      |..|++.|+++|+.++..|++.+..++..-  .+. . ....++|.|.++++..  ++++..++..|+++...  .++..
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~l--g~~-~-~~~~lip~l~~~~~~~--~ev~~~~~~~l~~~~~~~~~~~~~   85 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALAL--GVE-R-TRSELLPFLTDTIYDE--DEVLLALAEQLGTFTTLVGGPEYV   85 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHS--CHH-H-HHHTHHHHHHHTCCCC--HHHHHHHHHHHTTCSGGGTSGGGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--CcH-h-hHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHcCChhHH
Confidence            567899999999999999999998875421  111 1 1245689999988654  46788888888877542  23322


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                           ..+++.+..++.++++.+++.|+.++..++...+.  ..+ .. .+.+++..+..+.....+..++..+..+...
T Consensus        86 -----~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~--~~~-~~-~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~  156 (588)
T d1b3ua_          86 -----HCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDL-EA-HFVPLVKRLAGGDWFTSRTSACGLFSVCYPR  156 (588)
T ss_dssp             -----GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HHH-HH-THHHHHHHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred             -----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCH--HHH-HH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence                 24678888888899999999999999999876542  122 22 4455655554666677777787777777654


Q ss_pred             CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                      ..   ......+++.+..++++.++.++..++.+++.++..-...   .....+++.+..++.++++.++..|+.+++.+
T Consensus       157 ~~---~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i  230 (588)
T d1b3ua_         157 VS---SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNI  230 (588)
T ss_dssp             SC---HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHH
T ss_pred             hh---HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH---HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHh
Confidence            22   2333567888889999999999999999999998754322   23356778899999999999999999999999


Q ss_pred             hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcccccchhhhH
Q 015537          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAII  391 (405)
Q Consensus       313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~v  391 (405)
                      +...+..   -....+++.+..++.+. ++.+|..++.+|++++.. .++    .....++|.+..++...     ++.+
T Consensus       231 ~~~~~~~---~~~~~i~~~l~~~~~D~-~~~Vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~ll~d~-----~~~v  297 (588)
T d1b3ua_         231 AQLLPQE---DLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE----ITKTDLVPAFQNLMKDC-----EAEV  297 (588)
T ss_dssp             HHHSCHH---HHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH----HHHHTHHHHHHHHHTCS-----SHHH
T ss_pred             hccCCHH---HHHHHHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHhhhh----hhhhhhhHHHHHHHhcc-----chHH
Confidence            8543321   11224688999999888 999999999999999752 222    33457889999988755     3479


Q ss_pred             HHHHHHHHhhhc
Q 015537          392 YKLAIWLCLVTC  403 (405)
Q Consensus       392 r~~A~~al~n~~  403 (405)
                      |..|.++++.+|
T Consensus       298 r~~a~~~l~~~~  309 (588)
T d1b3ua_         298 RAAASHKVKEFC  309 (588)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999876

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.2e-11  Score=107.62  Aligned_cols=254  Identities=15%  Similarity=0.088  Sum_probs=191.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      ..+.|++.|.++++.++..|+..|..+-.            ...++.|+.++++++ +.++..|+++|+.+...... ..
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~-~~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-ED   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT-HH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc-cc
Confidence            45789999999999999999999987731            135899999999988 99999999999998654222 11


Q ss_pred             HHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcC
Q 015537          154 VVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (405)
Q Consensus       154 ~~~~~g~i~~L~-~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~  232 (405)
                      .     .++.+. .+++++++.++..++.+|++++...+....     ..++.+...+ .+.++.++..++.++......
T Consensus        86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~~  154 (276)
T d1oyza_          86 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVINDK  154 (276)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHh-cCcchHHHHHHHHHHhhcchH
Confidence            1     133333 356788999999999999999865543222     2355666666 778889999898888765432


Q ss_pred             CCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                                ..++.+..++...+..+...+.+++..+.......         .+.++..+.+.+..++..+..+++.+
T Consensus       155 ----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         155 ----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI---------RDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH---------HHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ----------HHHHHHHHhcccccchhhhhHHHHHHhhhcccccc---------chhhhhhhhhhhhhhhhhhccccchh
Confidence                      56778888888889999999998888876555432         34567778888999999999998876


Q ss_pred             hcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHH
Q 015537          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIY  392 (405)
Q Consensus       313 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr  392 (405)
                      .  .         ...++.|+..+.++   .+|..++++|+.+.  +         .+.+|.|..+|...++.    .||
T Consensus       216 ~--~---------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~---------~~~~~~L~~~l~~~~d~----~vr  266 (276)
T d1oyza_         216 K--D---------KRVLSVLCDELKKN---TVYDDIIEAAGELG--D---------KTLLPVLDTMLYKFDDN----EII  266 (276)
T ss_dssp             T--C---------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--C---------GGGHHHHHHHHTTSSCC----HHH
T ss_pred             h--h---------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--C---------HHHHHHHHHHHccCCCH----HHH
Confidence            3  2         24577888888755   58999999999883  2         35788999999876555    799


Q ss_pred             HHHHHHHh
Q 015537          393 KLAIWLCL  400 (405)
Q Consensus       393 ~~A~~al~  400 (405)
                      ..|.-+|.
T Consensus       267 ~~A~~~L~  274 (276)
T d1oyza_         267 TSAIDKLK  274 (276)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99988775

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.8e-12  Score=121.54  Aligned_cols=301  Identities=11%  Similarity=0.047  Sum_probs=214.8

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      ++.+...+.++++.++..|+..+..++..-.........-..++|.+...+++.+ +.++..++.++..++..-.  ...
T Consensus       283 ~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~-~~vr~~~~~~l~~~~~~~~--~~~  359 (588)
T d1b3ua_         283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILG--KDN  359 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHC--HHH
T ss_pred             hHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHhhhhhccc--hhH
Confidence            5667777778888888888888887765432222333344567888999988887 8999999988887764211  111


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                       ....++|.+..++.+++++++..++.+++.+......  ..+ ....++.+...+ .+.+..++..++.++..++....
T Consensus       360 -~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~~-~~~ll~~l~~~~-~d~~~~~r~~~~~~l~~l~~~~~  434 (588)
T d1b3ua_         360 -TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQL-SQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQLG  434 (588)
T ss_dssp             -HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHH-HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hhh-hhHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHcC
Confidence             1224789999999999999999999988887643211  111 122456677777 78899999999999999886532


Q ss_pred             CCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhc
Q 015537          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (405)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~  314 (405)
                      .  ......+.+.+..++.++...++..|+++++.++......   .....+++.+..++.+++...|..++.+++.+..
T Consensus       435 ~--~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~  509 (588)
T d1b3ua_         435 V--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE  509 (588)
T ss_dssp             G--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred             h--HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            1  1122456788888998889999999999999987532211   1223578999999999999999999999998875


Q ss_pred             CChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHH
Q 015537          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYK  393 (405)
Q Consensus       315 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~  393 (405)
                      ..+.   ......++|.+..++.++ .+.||..++++|..+... ++..    +...+.|.|..+ .++.+.    +||.
T Consensus       510 ~~~~---~~~~~~ilp~ll~~~~D~-v~nVR~~a~~~l~~i~~~~~~~~----~~~~i~~~l~~L-~~D~d~----dVr~  576 (588)
T d1b3ua_         510 VCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKL-TQDQDV----DVKY  576 (588)
T ss_dssp             HHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHH-TTCSSH----HHHH
T ss_pred             HcCh---HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHcCcHh----HHHHHHHHHHHH-cCCCCH----HHHH
Confidence            3221   223446899999999998 999999999999999763 3322    223344555554 444444    7999


Q ss_pred             HHHHHHhh
Q 015537          394 LAIWLCLV  401 (405)
Q Consensus       394 ~A~~al~n  401 (405)
                      .|..|+.-
T Consensus       577 ~A~~al~~  584 (588)
T d1b3ua_         577 FAQEALTV  584 (588)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999864

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.7e-12  Score=130.66  Aligned_cols=300  Identities=14%  Similarity=0.126  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHh
Q 015537           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (405)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~l  167 (405)
                      ..+..+..++..+...-.+....     -+++.+.+.+.+++ +..|..|+.+|+.++.+..+.....+. .+++.|+..
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il~-----~~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~  444 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELLP-----HILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQC  444 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSHH-----HHHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHHHH-----HHHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHh
Confidence            34555666555554322122111     13556666777777 899999999999999875443322222 467889999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHH
Q 015537          168 LYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP  246 (405)
Q Consensus       168 L~~~~~~i~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  246 (405)
                      +.++++.++..++|+|+.++.... ...+.. -...++.++..+ .+.++.++..++++|.+++.............+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            999999999999999999874211 111111 234677788887 77889999999999999987543222222233333


Q ss_pred             HHHhhhcCCChHHHHHHH---------------------------------------------HHHHHhc----------
Q 015537          247 ALAHLIHSNDDEVLTDAC---------------------------------------------WALSYLS----------  271 (405)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~---------------------------------------------~~l~~l~----------  271 (405)
                      .+...+...+......+.                                             .+++.++          
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~  602 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY  602 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhh
Confidence            333333322211111111                                             1111110          


Q ss_pred             ------------------------------------------------cCCh-hHHHHHHhcCChHHHHHhcCCCCcchH
Q 015537          272 ------------------------------------------------DGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVL  302 (405)
Q Consensus       272 ------------------------------------------------~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~  302 (405)
                                                                      ..-. .....+....+++.+...+.+.++.++
T Consensus       603 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr  682 (888)
T d1qbkb_         603 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR  682 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHH
Confidence                                                            0000 000001112344555566677788899


Q ss_pred             HHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcc
Q 015537          303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMF  382 (405)
Q Consensus       303 ~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~  382 (405)
                      ..|+.++|.++..........++ .+++.+...+.++ ...++..|+|++|.|+....+....-+ ..+++.|+.++.+.
T Consensus       683 ~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~  759 (888)
T d1qbkb_         683 QSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRP  759 (888)
T ss_dssp             HHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCC
Confidence            99999999988655443322222 4778888888887 889999999999999864333333222 35788899999765


Q ss_pred             cccchhhhHHHHHHHHHhhh
Q 015537          383 LHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       383 ~~~~~~~~vr~~A~~al~n~  402 (405)
                      ...   ..|+.+++-+||-+
T Consensus       760 ~~~---~~v~~n~~~~lgrl  776 (888)
T d1qbkb_         760 NTP---KTLLENTAITIGRL  776 (888)
T ss_dssp             TCC---HHHHHHHHHHHHHH
T ss_pred             Ccc---HHHHHHHHHHHHHH
Confidence            433   47999999999854

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2.8e-11  Score=105.12  Aligned_cols=227  Identities=14%  Similarity=0.097  Sum_probs=175.2

Q ss_pred             cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 015537          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (405)
Q Consensus       115 ~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~  194 (405)
                      ....+.|+++|++++ +.++..|+.+|+.+..  +         .+++.|+.+++++++.++..|+++|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            445778999999888 9999999999998743  1         3589999999999999999999999998654332 1


Q ss_pred             HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCC
Q 015537          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (405)
Q Consensus       195 ~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (405)
                      +.     .++.+...+.+++++.++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            21     244566666688899999999999999987642    1224567788888888899999999888876542  


Q ss_pred             hhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 015537          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (405)
Q Consensus       275 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~n  354 (405)
                               ...++.+..++...+..++..+..+++.+......         ..+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     34567888889888999999999888887765542         344567777777 89999999999987


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          355 ITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      +.           ....+|.|++.+.+.       .||..|+++|+.+
T Consensus       215 ~~-----------~~~~~~~L~~~l~d~-------~vr~~a~~aL~~i  244 (276)
T d1oyza_         215 RK-----------DKRVLSVLCDELKKN-------TVYDDIIEAAGEL  244 (276)
T ss_dssp             TT-----------CGGGHHHHHHHHTSS-------SCCHHHHHHHHHH
T ss_pred             hh-----------hhhhHHHHHHHhCCh-------HHHHHHHHHHHHc
Confidence            73           234678888887632       5899999999865

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.7e-10  Score=107.27  Aligned_cols=294  Identities=17%  Similarity=0.181  Sum_probs=187.0

Q ss_pred             CHHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCch
Q 015537           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      .++.+++.+.++  ++..+..++.++..+.... .+.........+++.++..+.+++ +..++..|+.++.++......
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            477888888763  4566777788887775433 222212222345788888887643 368999999999998875433


Q ss_pred             hHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       151 ~~~-~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      ... ........+.+..++.+++++++..++.+|..++...+..-...+. ..+..++.....+.+..++..++.++..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            211 1222245677888888999999999999999998654432111111 12333333333677888888888888877


Q ss_pred             hcCC----------------CC-CC----hhhhhccHHHHHhhhcC-------CChHHHHHHHHHHHHhccCChh-HHHH
Q 015537          230 CRGK----------------PQ-PP----FDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTND-KIQA  280 (405)
Q Consensus       230 ~~~~----------------~~-~~----~~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~-~~~~  280 (405)
                      +...                +. ..    ......+.|.+...+..       .+..++..+..++..++....+ ... 
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-  364 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-  364 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhh-
Confidence            6421                00 00    01123344555554432       2245788888888887754332 222 


Q ss_pred             HHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 015537          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (405)
Q Consensus       281 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~  359 (405)
                          .+++.+...+.++++.++..|+.+||.++.+.. ..... .-..+++.++..+.++ ++.||..|+|+|+.++..-
T Consensus       365 ----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~~~  438 (458)
T d1ibrb_         365 ----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL  438 (458)
T ss_dssp             ----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHG
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence                246788888899999999999999999986542 22111 2246899999999998 9999999999999997532


Q ss_pred             HHHHHHHHHhCcHHHHHHHH
Q 015537          360 REQIQVIMHVHAFSIIVAFF  379 (405)
Q Consensus       360 ~~~~~~l~~~~~i~~L~~lL  379 (405)
                      ++.   ......+++++..|
T Consensus       439 ~~~---~~~~~~l~~ll~~l  455 (458)
T d1ibrb_         439 PEA---AINDVYLAPLLQCL  455 (458)
T ss_dssp             GGG---CCSTTTHHHHHHHH
T ss_pred             hcc---cchhhHHHHHHHHH
Confidence            211   11233466666555

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.3e-10  Score=121.68  Aligned_cols=271  Identities=14%  Similarity=0.114  Sum_probs=195.1

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      +..+++.+.+.|++.++-|+.-|.+.+..+ ....+.-....+++.|+++|++++ +++|..|+.||+.++..-++... 
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~-~~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~-   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV-   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhc-ccccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH-
Confidence            678899999999999999999999887654 222222223347899999999888 99999999999999886444321 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh------hHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR------CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~------~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                         ..+++.|+..+.+++...+..+..+|..+...-+.      ....+ ....++.+...+.+..+..++..++.++..
T Consensus        82 ---~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             ---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence               24678888888888888898888888777532211      11111 122445556666566788899999999999


Q ss_pred             hhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc-CCCCcchHHHHHH
Q 015537          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALR  307 (405)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~  307 (405)
                      +....+.........+++.+...+.++++.++..|+.+|+.++....+..    -..+++.++..+ .+.+...+..++.
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            88776544444556788889999999999999999999999986543321    123456666555 4455667777889


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (405)
Q Consensus       308 ~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (405)
                      +++.++...+...... -..+++.+...+.+. +..+|+.+..++..++..
T Consensus       234 ~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~  282 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRR  282 (1207)
T ss_dssp             HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHh
Confidence            9999886544322111 136789999999998 899999999999998764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.5e-11  Score=119.06  Aligned_cols=311  Identities=14%  Similarity=0.108  Sum_probs=187.4

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHH--hcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCc-hhH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-EHT  152 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~-~~~  152 (405)
                      +.+.+.+.++++..+..|+.++..++.+.    .+.+.  -..+++.++..+++++ +.+|..|+|+|+.++.... ...
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~----~~~~~~~l~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~  472 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGC----MQGMIPYLPELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPP  472 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTS----HHHHTTTHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCH
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhH----HHHhcccchhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh
Confidence            44445667888999999999999886432    12221  1235788999998888 9999999999999876321 112


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh----hhHHHHH--------------------------h---
Q 015537          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP----RCRDLVL--------------------------S---  199 (405)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~----~~~~~i~--------------------------~---  199 (405)
                      ... -..+++.++..+.++++.+++.|+++|.+++....    ++-..++                          +   
T Consensus       473 ~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~  551 (888)
T d1qbkb_         473 DTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG  551 (888)
T ss_dssp             HHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHG
T ss_pred             hhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence            222 23678889999999999999999999999873211    0000000                          0   


Q ss_pred             -----cCChHHHHHhh----h--CCCchhHHHHHHHHHHH----------------------------------------
Q 015537          200 -----QGGLVPLLAQL----N--GQPKLSMLRNATWTLSN----------------------------------------  228 (405)
Q Consensus       200 -----~~~i~~L~~~l----~--~~~~~~~~~~a~~~l~~----------------------------------------  228 (405)
                           ...+..++..+    .  ...+.. ...+..++..                                        
T Consensus       552 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  630 (888)
T d1qbkb_         552 HHLNKPEYIQMLMPPLIQKWNMLKDEDKD-LFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ  630 (888)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHTTSCTTCTT-HHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence                 00011111111    0  011110 0011111111                                        


Q ss_pred             ------------------hhcCCCCCChhh--hhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChH
Q 015537          229 ------------------FCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (405)
Q Consensus       229 ------------------l~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~  288 (405)
                                        +...-.......  ...+++.+...+++.+++++..+..+++.++..........++ .+++
T Consensus       631 ~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~  709 (888)
T d1qbkb_         631 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMP  709 (888)
T ss_dssp             SCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHH
Confidence                              111000000000  1234556666777788899999999888887654433222222 3567


Q ss_pred             HHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHH
Q 015537          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQVIM  367 (405)
Q Consensus       289 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (405)
                      .+...|.+...+++..|++++|.|+..........+ ..+++.|+.+++++. +..+++.+|-+||.|+...|+.+..-+
T Consensus       710 ~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l  788 (888)
T d1qbkb_         710 ILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML  788 (888)
T ss_dssp             HHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhH
Confidence            788888888889999999999999865443322222 257888999998762 345899999999999887777553322


Q ss_pred             HhCcHHHHHHHHhcccccchhhhHHHHHHHHHh
Q 015537          368 HVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCL  400 (405)
Q Consensus       368 ~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~  400 (405)
                       ..+++.++..|....+.    .-+..|.-.++
T Consensus       789 -~~~~~~~~~~l~~~~d~----~ek~~~~~g~~  816 (888)
T d1qbkb_         789 -QQFIRPWCTSLRNIRDN----EEKDSAFRGIC  816 (888)
T ss_dssp             -GGTHHHHHHHHTTSCCS----HHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhccCCCc----HHHHHHHHHHH
Confidence             34677778777665444    22444444443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.7e-10  Score=104.13  Aligned_cols=276  Identities=14%  Similarity=0.074  Sum_probs=177.5

Q ss_pred             CcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChh
Q 015537          116 GVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPR  192 (405)
Q Consensus       116 g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~  192 (405)
                      +.++.+++.+.++. ++..+..++.++..++.........-.-..+++.++..+.+  .+..++..++.+++++......
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            56888888886533 35678888899988876433221111112456788888875  4678999999999999865543


Q ss_pred             hHHH-HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhc-cHHHHHhhhcCCChHHHHHHHHHHHHh
Q 015537          193 CRDL-VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYL  270 (405)
Q Consensus       193 ~~~~-i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~l~~L~~ll~~~d~~v~~~a~~~l~~l  270 (405)
                      .... .......+.+...+ .+++++++..++.++..++...+..-...+.. ..+.+...+.+.+++++..++..+..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHh-cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            2211 11122334444445 78899999999999999988754333333333 334556667788899999999888877


Q ss_pred             ccCChhHH--------------------HHHHhcCChHHHHHhcCC-------CCcchHHHHHHHHhHhhcCChhhHHHH
Q 015537          271 SDGTNDKI--------------------QAVIEAGVFPRLAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCV  323 (405)
Q Consensus       271 ~~~~~~~~--------------------~~~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~  323 (405)
                      +.......                    .......+++.+...+..       .+..++..+..+++.++.......   
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---  362 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---  362 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---
Confidence            64221110                    001111234455555432       234678888888888875333221   


Q ss_pred             HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhh
Q 015537          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-REQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       324 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      + ..+++.+...+.++ ++.+|..|+.+|+.++.+. ++.+... -..++|.++..+.+.     ++.||..|+|+|+.+
T Consensus       363 ~-~~l~~~i~~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~-----~~~VR~~a~~~l~~i  434 (458)
T d1ibrb_         363 V-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-----SVVVRDTAAWTVGRI  434 (458)
T ss_dssp             H-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHH
T ss_pred             h-hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHH
Confidence            1 13577888888888 9999999999999998642 2222211 246778888877543     357999999999987


Q ss_pred             c
Q 015537          403 C  403 (405)
Q Consensus       403 ~  403 (405)
                      |
T Consensus       435 ~  435 (458)
T d1ibrb_         435 C  435 (458)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.5e-09  Score=104.42  Aligned_cols=318  Identities=16%  Similarity=0.163  Sum_probs=196.9

Q ss_pred             CHHHHHHhhcCCC--hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCch
Q 015537           74 NLPVMVAGVWSND--SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        74 ~l~~l~~~l~s~~--~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      -++.+++.+.+++  ...+..++.+|..+...- .+....-.-..+++.+++.+.+++ +..++..|+.++.+.......
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~-~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            4788888887654  567777888888875422 111111112346788888886543 368899999999887664322


Q ss_pred             hHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       151 ~~~-~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                      ... .....-+++.+...+.+++++++..++.+|..++...+..-...........+...+ .+.+..+...++..+..+
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i  286 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHH
Confidence            111 111122467777888889999999999999999865543322222222233334444 667777777777777766


Q ss_pred             hcCC----------------CC-CCh----hhhhccHHHHHhhhcCC-------ChHHHHHHHHHHHHhccCChhHHHHH
Q 015537          230 CRGK----------------PQ-PPF----DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQAV  281 (405)
Q Consensus       230 ~~~~----------------~~-~~~----~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~~  281 (405)
                      +...                +. ...    .....++|.+...+...       +..++..+..++..++....+..   
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---  363 (876)
T d1qgra_         287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---
T ss_pred             HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---
Confidence            6421                00 011    11234445555554321       23467777777777764332221   


Q ss_pred             HhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 015537          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (405)
Q Consensus       282 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  361 (405)
                      + ..+++.+...+.+.++..+..++.+++.+..+.......-.-..+++.+...+.++ ++.+|..++|+++.++...+.
T Consensus       364 ~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~  441 (876)
T d1qgra_         364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGG
T ss_pred             h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHHHHcch
Confidence            1 12346677777888999999999999999876543322233345788999999998 999999999999999753322


Q ss_pred             HHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          362 QIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       362 ~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      .   ......++.++..+....+.  .+.++..++|++.+++
T Consensus       442 ~---~~~~~~~~~~~~~l~~~l~~--~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         442 A---AINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLA  478 (876)
T ss_dssp             G---TSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHH
T ss_pred             h---hhhHHHhhhHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence            1   11223344444444333222  3689999999999875

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.1e-08  Score=102.26  Aligned_cols=315  Identities=14%  Similarity=0.094  Sum_probs=192.6

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCC--chHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSP--PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~--~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~  153 (405)
                      ..+++.+.++++.++..++.++..++..+ -+  .+.     .+++.|++.+.+++.+..+..|+.+|+.++........
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~-~p~~~wp-----eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~  171 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIE-LPHGAWP-----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ  171 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHH-GGGTCCH-----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHh-CCcCchH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence            55677788888999999999998886532 11  111     35788888888776577888999999999865333222


Q ss_pred             HHHhC--CChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHH-HHHhcCChHHHHHhhhCCCchhHHHHHHHHHHH
Q 015537          154 VVIDH--GAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (405)
Q Consensus       154 ~~~~~--g~i~~L~~lL~--~~~~~i~~~a~~~L~nl~~~~~~~~~-~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~  228 (405)
                      .+...  .+++.++..+.  ..+..++..++.+++++....+..-. .......++.+...+ .+++++++..++.++..
T Consensus       172 ~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~  250 (861)
T d2bpta1         172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAAAFGCLCK  250 (861)
T ss_dssp             TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh-cCCCHHHHHHHHHHHHH
Confidence            11111  23344444443  35688999999999998865432211 111122445566666 78899999999999999


Q ss_pred             hhcCCCCCChhhhhccHHH-HHhhhcCCChHHHHHHHHHHHHhccCChhHH---------------------H-------
Q 015537          229 FCRGKPQPPFDQVSPALPA-LAHLIHSNDDEVLTDACWALSYLSDGTNDKI---------------------Q-------  279 (405)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~-L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~---------------------~-------  279 (405)
                      ++...+..-...+...+.. +.....+.++.++..++..+..++.......                     .       
T Consensus       251 i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~  330 (861)
T d2bpta1         251 IMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL  330 (861)
T ss_dssp             HHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9876543333333333433 3344556677777777665554432110000                     0       


Q ss_pred             -----------------------------HHHhcCChHH----HHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhc
Q 015537          280 -----------------------------AVIEAGVFPR----LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (405)
Q Consensus       280 -----------------------------~~~~~~~l~~----L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~  326 (405)
                                                   ......+++.    +...+.+.++..+..++.+++.++.+.........-.
T Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~  410 (861)
T d2bpta1         331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH  410 (861)
T ss_dssp             HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Confidence                                         0000112222    2233456667778888888888887654332222223


Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       327 g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      .+++.+...+.++ ++.+|..++|+++.++...+.   .+.....++.++..+......  ++.++..++|++.+++
T Consensus       411 ~~l~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~~~l~  481 (861)
T d2bpta1         411 QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAE---SIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTIINLV  481 (861)
T ss_dssp             HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGG---GSCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhch---hhhhHHhhhhhhHHHHhcccc--ChHHHHHHHHHHHHHH
Confidence            5788999999998 999999999999999742111   111234455555544332222  3578999999988775

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.3e-08  Score=102.25  Aligned_cols=233  Identities=14%  Similarity=0.158  Sum_probs=158.9

Q ss_pred             cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 015537          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (405)
Q Consensus       117 ~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~  196 (405)
                      +++.+...+.....+.++..|+.+|+.+........... ...+++.++..+.++++.++..|+.+|+.++...+.   .
T Consensus       131 l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~---~  206 (1207)
T d1u6gc_         131 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---I  206 (1207)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH---H
Confidence            445555555555557899999999998866322211101 113567788888899999999999999999865442   1


Q ss_pred             HHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChh
Q 015537          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (405)
Q Consensus       197 i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (405)
                      . -...+..++..+..+.+...++.++.++..+++..+.........++|.+...+..++++++..++.++..++...+.
T Consensus       207 ~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         207 V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence            1 123567777777666677777888889999988765444455678899999999999999999999998888755432


Q ss_pred             HHHHHHhcCChHHHHHh-------------------------------------cCCCCcchHHHHHHHHhHhhcCChhh
Q 015537          277 KIQAVIEAGVFPRLAEF-------------------------------------LMHPSPSVLIPALRTVGNIVTGDDMQ  319 (405)
Q Consensus       277 ~~~~~~~~~~l~~L~~l-------------------------------------L~~~~~~v~~~a~~~l~nl~~~~~~~  319 (405)
                      ...... ..+++.+...                                     ..+..+.++..++.+|+.++...++.
T Consensus       286 ~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~  364 (1207)
T d1u6gc_         286 EVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM  364 (1207)
T ss_dssp             CCHHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred             hhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence            211110 0111111111                                     12334678999999999998776655


Q ss_pred             HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       320 ~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      ..... ..+++.++..+.+. ++.+|..+..+++.+..
T Consensus       365 l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         365 LPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLK  400 (1207)
T ss_dssp             HHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHH
Confidence            44333 36889999999888 89999999988888753

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=5.7e-08  Score=97.01  Aligned_cols=310  Identities=10%  Similarity=0.108  Sum_probs=185.8

Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCC
Q 015537           80 AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (405)
Q Consensus        80 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g  159 (405)
                      ..+.+.++..+..++..+..+.... ......-.-..+++.++..+.+++ +.++..++|+++.++......   +....
T Consensus       376 ~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~---~~~~~  450 (861)
T d2bpta1         376 QNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAES---IDPQQ  450 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGG---SCTTT
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhchh---hhhHH
Confidence            3445678888889999888886433 222222222346889999999888 999999999999987642211   11223


Q ss_pred             ChHHHHHhhC---CCCHHHHHHHHHHHHHhhCC----Ch-hhHHHHHhcCChHHHHHhhh-CCCchhHHHHHHHHHHHhh
Q 015537          160 AVPIFVKLLY---SPSDDVREQAVWALGNIAGD----SP-RCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFC  230 (405)
Q Consensus       160 ~i~~L~~lL~---~~~~~i~~~a~~~L~nl~~~----~~-~~~~~i~~~~~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~  230 (405)
                      .++.++..+.   ..++.+...+++++.+++..    .. ......  ...+..++.... ...+..++..+..++..+.
T Consensus       451 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i  528 (861)
T d2bpta1         451 HLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMV  528 (861)
T ss_dssp             THHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHH--hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            3444333331   35778888898988887631    11 111111  113344555443 2346778888888998888


Q ss_pred             cCCCCCChhhhhccHHHHHh----hhcCCC-----------hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC
Q 015537          231 RGKPQPPFDQVSPALPALAH----LIHSND-----------DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (405)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~----ll~~~d-----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~  295 (405)
                      ...+.........+.+.+..    .+....           ..++..++.++..+............ ..+++.+...+.
T Consensus       529 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l~  607 (861)
T d2bpta1         529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLE  607 (861)
T ss_dssp             HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhhcc
Confidence            76544333333333343333    222211           12344444455554432222111111 123456666664


Q ss_pred             -CCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHH
Q 015537          296 -HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSI  374 (405)
Q Consensus       296 -~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~  374 (405)
                       ..+..++..++.+++.++..-.......+. .++|.+...+.+. ++.++..|+.+++.++...++...... ..+++.
T Consensus       608 ~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~-~~i~~~  684 (861)
T d2bpta1         608 KKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAMMNV  684 (861)
T ss_dssp             STTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhH-HHHHHH
Confidence             445678889999999998654433332332 5789999999998 889999999999999864443333322 346778


Q ss_pred             HHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          375 IVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       375 L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      |++.+.+...   .+.+|..|..+++.++
T Consensus       685 L~~~l~~~~~---~~~~k~~~~~~l~~i~  710 (861)
T d2bpta1         685 LAQMISNPNA---RRELKPAVLSVFGDIA  710 (861)
T ss_dssp             HHHHHHCTTC---CTTHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCC---CHHHHHHHHHHHHHHH
Confidence            8888865432   2478999999887653

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=1.3e-07  Score=85.38  Aligned_cols=277  Identities=14%  Similarity=0.098  Sum_probs=182.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHh-cCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~-~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      +.+...+.+++.-....+...+..+++.. .......-. ......+-.+...++ ...+.-++.++..+... ++.|..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr~-~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAVI-PEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhcC-ccHHHH
Confidence            44455566667777777887888887654 233221110 112333334445555 78888899999998887 788887


Q ss_pred             HHhC--CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHhhhCC
Q 015537          155 VIDH--GAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQ  213 (405)
Q Consensus       155 ~~~~--g~i~~L~~lL~~-----------------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~L~~~l~~~  213 (405)
                      +...  ..++.|+..|..                 ....++.+++.+++-++-+.. ....+.+.  +.++.++.++..+
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhh
Confidence            7543  346666666632                 134678999999999986554 44555444  3478888888788


Q ss_pred             CchhHHHHHHHHHHHhhcCCCCCCh------hhhhccHHHHHhhhcC--CChHHHHHHHHHHHHh-------cc------
Q 015537          214 PKLSMLRNATWTLSNFCRGKPQPPF------DQVSPALPALAHLIHS--NDDEVLTDACWALSYL-------SD------  272 (405)
Q Consensus       214 ~~~~~~~~a~~~l~~l~~~~~~~~~------~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l-------~~------  272 (405)
                      ..+.+.+.++.++.|++........      ....++++.+..+...  .|+++..+.-..-..|       +.      
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~  360 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA  360 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            8999999999999999986422111      1123455554444332  4777665543221111       10      


Q ss_pred             --------CChhHH-HHH--------Hh--cCChHHHHHhcC----------CCCcchHHHHHHHHhHhhcCChhhHHHH
Q 015537          273 --------GTNDKI-QAV--------IE--AGVFPRLAEFLM----------HPSPSVLIPALRTVGNIVTGDDMQTQCV  323 (405)
Q Consensus       273 --------~~~~~~-~~~--------~~--~~~l~~L~~lL~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~~  323 (405)
                              .++.+. ..+        -+  ..++..|+.+|.          +.++.+..-||.=||.++..-+..+..+
T Consensus       361 Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il  440 (477)
T d1ho8a_         361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVL  440 (477)
T ss_dssp             HHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHH
Confidence                    111111 111        01  134678888885          3366788889999999999999888888


Q ss_pred             HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 015537          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (405)
Q Consensus       324 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~  357 (405)
                      -+.|+=..++.++.++ ++.||.+|..++.-+..
T Consensus       441 ~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         441 DKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            8889999999999999 99999999999987754

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.1e-07  Score=93.04  Aligned_cols=311  Identities=13%  Similarity=0.066  Sum_probs=190.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCchhHHH
Q 015537           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV  154 (405)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~-~~~~~~~a~~~L~ni~~~~~~~~~~  154 (405)
                      ..+++.+.+++. .+..++.++..++..+ -+ ...  -.+++|.+++.+.+++ .+.++..++.+|..++..-......
T Consensus        93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~~-~p-~~~--Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~  167 (876)
T d1qgra_          93 NYVLHTLGTETY-RPSSASQCVAGIACAE-IP-VNQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ  167 (876)
T ss_dssp             HHHHHHTTTCCS-SSCHHHHHHHHHHHHH-GG-GTC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHG
T ss_pred             HHHHHHhcCCcH-HHHHHHHHHHHHHHHH-CC-ccc--cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            456666666553 3444566666665432 11 000  1357899999887644 3678888999999987632211111


Q ss_pred             HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHH-HhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhc
Q 015537          155 VIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLV-LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~--~~~~i~~~a~~~L~nl~~~~~~~~~~i-~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~  231 (405)
                      -.-..+++.++..+.+  ++..++..++.++.+........-... ...-.+..+...+ .++++.++..++.++..++.
T Consensus       168 ~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l~~  246 (876)
T d1qgra_         168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMS  246 (876)
T ss_dssp             GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence            1112467888888865  457899999999998875443221111 1111334445555 77899999999999999988


Q ss_pred             CCCCCChhhh-hccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHH--------------------HHHHhcCChHHH
Q 015537          232 GKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI--------------------QAVIEAGVFPRL  290 (405)
Q Consensus       232 ~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~--------------------~~~~~~~~l~~L  290 (405)
                      ..+......+ ..+.+.+...+.+.++++...++..+..++.......                    .......+++.+
T Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  326 (876)
T d1qgra_         247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  326 (876)
T ss_dssp             HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            7544433333 3344566667777888888887777666654221111                    001112233444


Q ss_pred             HHhcCC-------CCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHH
Q 015537          291 AEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQ  362 (405)
Q Consensus       291 ~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~  362 (405)
                      ...+..       .+..++..|..++..++.......   + ..+++.+...+.++ ++..|+.+++.++.+..+ ....
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~~  401 (876)
T d1qgra_         327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQ  401 (876)
T ss_dssp             HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHH
T ss_pred             HHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---h-hhhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHHH
Confidence            444432       233577778888877764332211   1 12456677777777 899999999999999875 3443


Q ss_pred             HHHHHHhCcHHHHHHHHhcccccchhhhHHHHHHHHHhhhc
Q 015537          363 IQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       363 ~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      .... -..+++.+...+...     ++.||..|.|+++.+|
T Consensus       402 ~~~~-~~~~~~~l~~~l~d~-----~~~vr~~a~~~l~~~~  436 (876)
T d1qgra_         402 LKPL-VIQAMPTLIELMKDP-----SVVVRDTAAWTVGRIC  436 (876)
T ss_dssp             HHHH-HHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhhcCC-----ccHHHHHHHHHHHHHH
Confidence            3332 345678888877543     3579999999999876

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=3.5e-06  Score=75.93  Aligned_cols=317  Identities=11%  Similarity=0.053  Sum_probs=202.4

Q ss_pred             CHHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCCchHHHH----hc-C-cHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVI----RS-G-VVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (405)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~----~~-g-~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~  146 (405)
                      .+..+++.+.. ..+++....+..+..++..+  +....++    +. . .-+.+..++..++ .-....+..++..++.
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d--~~~~~~~~~~~~~~~~~~~~f~~~l~~~d-~~~~~~s~~i~~ll~~  151 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD--KYGDDTVKFFQEDPKQLEQLFDVSLKGDF-QTVLISGFNVVSLLVQ  151 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS--SSSHHHHHHHHHCTTHHHHHHHHCSCSSH-HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcC--cchhHHHHHHhhCccchhHHHHHhccCch-hHHHHHHHHHHHHHHh
Confidence            46788888886 56788888888888888653  3332222    21 2 2345556665555 5667777777788877


Q ss_pred             CCchhHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhhC-----------
Q 015537          147 GTSEHTKVVIDH-GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNG-----------  212 (405)
Q Consensus       147 ~~~~~~~~~~~~-g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~L~~~l~~-----------  212 (405)
                      .........-.. .....+-.+..+.+.+.+..++.++..+....+ +|..+..  ...+.++++.|..           
T Consensus       152 ~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~-~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~  230 (477)
T d1ho8a_         152 NGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  230 (477)
T ss_dssp             TTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             ccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCcc-HHHHHHHcccchHHHHHHHHHHHhcccccchhh
Confidence            544333221111 233444445567888999999999999987654 7777643  3346666666631           


Q ss_pred             -----CCchhHHHHHHHHHHHhhcCCCCCChhhhh---ccHHHHHhhhcC-CChHHHHHHHHHHHHhccCChh-----HH
Q 015537          213 -----QPKLSMLRNATWTLSNFCRGKPQPPFDQVS---PALPALAHLIHS-NDDEVLTDACWALSYLSDGTND-----KI  278 (405)
Q Consensus       213 -----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~---~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~-----~~  278 (405)
                           ....+++..++.+++.|+.... .......   +.++.++.+++. ...+|..-++.++.|++.....     ..
T Consensus       231 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~  309 (477)
T d1ho8a_         231 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  309 (477)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence                 2246889999999999997632 2122222   447777777754 5688888999999999865321     24


Q ss_pred             HHHHhcCChHHHHHhcCC--CCcchHHHHHHHHhHhhc----------------------CChhhH-HHHH---------
Q 015537          279 QAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVT----------------------GDDMQT-QCVI---------  324 (405)
Q Consensus       279 ~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~nl~~----------------------~~~~~~-~~~~---------  324 (405)
                      ..++..++++.+-.+...  .|+++. ..+..|..+..                      -++.++ +.+.         
T Consensus       310 ~~~v~~~~l~~l~~L~~r~~~Dedl~-edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e  388 (477)
T d1ho8a_         310 QLLLLGNALPTVQSLSERKYSDEELR-QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  388 (477)
T ss_dssp             HHHHHHCHHHHHHHHHSSCCSSHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHcchhHHHHHHhcCCCCCHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcc
Confidence            446666766655444322  244432 23333322221                      122222 2222         


Q ss_pred             -hcCchHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcccccchhhhHHHH
Q 015537          325 -EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHFFFGAIIYKL  394 (405)
Q Consensus       325 -~~g~l~~L~~ll~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~vr~~  394 (405)
                       +..++..|+++|.+         +.++.+..-||.=||.++.+.|..+..+-+.|+=..+++++.+.     .++||.+
T Consensus       389 ~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~-----d~~Vr~e  463 (477)
T d1ho8a_         389 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-----DSRVKYE  463 (477)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-----SHHHHHH
T ss_pred             cchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-----CHHHHHH
Confidence             22478899999962         22778888999999999998888777777899999999999665     2479999


Q ss_pred             HHHHHhh
Q 015537          395 AIWLCLV  401 (405)
Q Consensus       395 A~~al~n  401 (405)
                      |..|+.-
T Consensus       464 AL~avQk  470 (477)
T d1ho8a_         464 ALKATQA  470 (477)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.49  E-value=9.8e-09  Score=75.67  Aligned_cols=109  Identities=18%  Similarity=0.245  Sum_probs=88.8

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHH
Q 015537          168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (405)
Q Consensus       168 L~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~  247 (405)
                      |+++++.++..|+++|+.+.            ...+++|+..+ .++++.++..++++|.++..          ...++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l-~d~~~~vR~~a~~~L~~~~~----------~~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESL-SNEDWRIRGAAAWIIGNFQD----------ERAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGG-GCSCHHHHHHHHHHHGGGCS----------HHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcch----------hhhHHH
Confidence            45677888888888887652            12567888888 78899999999999987753          257889


Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHh
Q 015537          248 LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (405)
Q Consensus       248 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~  310 (405)
                      |..+++++++.|+..++++|+.+..  +         +.++.|..++.++++.++..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~~--~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhCc--c---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999999999998842  2         23578889999999999999998874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.44  E-value=1.2e-08  Score=75.14  Aligned_cols=108  Identities=18%  Similarity=0.203  Sum_probs=87.6

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHH
Q 015537          126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP  205 (405)
Q Consensus       126 ~~~~~~~~~~~a~~~L~ni~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~  205 (405)
                      ++++ +.+|..|+++|+.+..            ..++.|+..|.++++.++..++++|+++..           .+.++.
T Consensus         2 ~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~   57 (111)
T d1te4a_           2 ADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP   57 (111)
T ss_dssp             CSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred             CCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence            4455 6788888888876521            367889999999999999999999998742           124678


Q ss_pred             HHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHH
Q 015537          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS  268 (405)
Q Consensus       206 L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~  268 (405)
                      |..++ .++++.++..++++|..+..          ...++.|..+++++++.++..++.+|.
T Consensus        58 L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88888 68899999999999998743          367888999999999999999988763

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.0011  Score=55.83  Aligned_cols=221  Identities=15%  Similarity=0.169  Sum_probs=156.1

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH----HHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhh
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~----~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~  230 (405)
                      +...+.+..|+..|..-+-+-+..+..+++++.......+    +.+..  -.+.+..++....++++.-.+-..|..++
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCCcchhhhhhHHHHHHH
Confidence            4445778888888888888999999999999985543322    33332  23444444444457777777777888777


Q ss_pred             cCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhc---CChHHHHHhcCCCCcchHHHHHH
Q 015537          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPALR  307 (405)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~a~~  307 (405)
                      ++..-.......+.+..+...++.++-++..+|..++..+...........+..   .++.....+|.+++.-.+..++.
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK  222 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  222 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            774333333345666677788888999999999999999876666555555554   34566778999999999999999


Q ss_pred             HHhHhhcCCh--hh-HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHH---hCcHHHHHHH
Q 015537          308 TVGNIVTGDD--MQ-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG--NREQIQVIMH---VHAFSIIVAF  378 (405)
Q Consensus       308 ~l~nl~~~~~--~~-~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~---~~~i~~L~~l  378 (405)
                      .||.+.....  .. +.++-+..-+..++.+|.+. +..|+-+|..++--+.++  .|..+..++-   ..++..|-+.
T Consensus       223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f  300 (330)
T d1upka_         223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF  300 (330)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhC
Confidence            9999995443  22 23344455899999999999 999999999999988873  3344555542   3444444444

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.007  Score=50.82  Aligned_cols=242  Identities=12%  Similarity=0.125  Sum_probs=166.8

Q ss_pred             HHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH----HHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHH
Q 015537          110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT----KVVIDH-GAVPIFVKLLYSPSDDVREQAVWALG  184 (405)
Q Consensus       110 ~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~----~~~~~~-g~i~~L~~lL~~~~~~i~~~a~~~L~  184 (405)
                      +++...+++..|+..|..=+ -+.+..++.+++++.......+    +.+... .++..|+..-.  ++++.-.+...|.
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~-fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLR  139 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCC-CchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHH
Confidence            34556788999999998877 7889999999999988655443    334332 34455555444  5566666666676


Q ss_pred             HhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCCCCChhhh----hccHHHHHhhhcCCChHHH
Q 015537          185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALAHLIHSNDDEVL  260 (405)
Q Consensus       185 nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~----~~~l~~L~~ll~~~d~~v~  260 (405)
                      ..+.+.. ....++....+..+.+.+ ..++-++...|..++..+-..++.......    ...+.....+|.+++--++
T Consensus       140 Ecik~e~-lak~iL~s~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         140 ECIRHEP-LAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHTSHH-HHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHhhHH-HHHHHHccHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            6666555 556667777788888888 888999999999999987766533222222    4556667789999999999


Q ss_pred             HHHHHHHHHhccCChh---HHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHhhcCCh--hhHHHHH-hc--CchHHH
Q 015537          261 TDACWALSYLSDGTND---KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVI-EY--QALPCL  332 (405)
Q Consensus       261 ~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~-~~--g~l~~L  332 (405)
                      ..++..|+.+......   ...++-+..-+..++.+|++.+..++..|..++--+++...  ..+..++ ..  .++..|
T Consensus       218 RqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl  297 (330)
T d1upka_         218 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFL  297 (330)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHH
Confidence            9999999998744322   22334444668889999999999999999999988887553  2233333 22  366666


Q ss_pred             HHhhcCC-CchhHHHHHHHHHHHHh
Q 015537          333 LNLLSGN-YKKSIKKEACWTVSNIT  356 (405)
Q Consensus       333 ~~ll~~~-~~~~v~~~a~~~L~nl~  356 (405)
                      .++..+. .|.....+=.+.+..|.
T Consensus       298 ~~f~~d~~~DeqF~~EK~~lI~~I~  322 (330)
T d1upka_         298 SKFQNDRTEDEQFNDEKTYLVKQIR  322 (330)
T ss_dssp             HHTTTTC-CCSHHHHHHHHHHHHHH
T ss_pred             HhCCCCCCchhhHHHHHHHHHHHHH
Confidence            7765442 35666666555555553

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.99  E-value=0.027  Score=48.57  Aligned_cols=243  Identities=15%  Similarity=0.118  Sum_probs=144.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcC---cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCch
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g---~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~  150 (405)
                      .+-.+++.+..-+.+........+..- ...+....+.+...|   .+..+.+++.+..-+  ..+|...|..++.... 
T Consensus        44 kF~~Lv~~lR~~~~e~l~~v~~~~~~~-~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls--~~ea~~~l~~l~~~~~-  119 (336)
T d1lsha1          44 KFLRLTAFLRNVDAGVLQSIWHKLHQQ-KDYRRWILDAVPAMATSEALLFLKRTLASEQLT--SAEATQIVASTLSNQQ-  119 (336)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHTTS-HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcC-hhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC--HHHHHHHHHHHhccCC-
Confidence            356777777776655554443332110 000011123333334   455677777665522  1234444444444311 


Q ss_pred             hHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHhhh---CCCchhHH
Q 015537          151 HTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSML  219 (405)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~----~~~~i~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~L~~~l~---~~~~~~~~  219 (405)
                      -..     ..+..+..++.+    .++.++..+.-++|+++.    ..+.+.+     ..++.+...+.   ...+.+-.
T Consensus       120 Pt~-----~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~  189 (336)
T d1lsha1         120 ATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEI  189 (336)
T ss_dssp             CCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCH-----HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccchHHH
Confidence            111     235566677765    478899999999998862    2222222     23444444442   34566667


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcC-------CChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHH
Q 015537          220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (405)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~  292 (405)
                      ..++.+|.|+-..          ..++.+..++..       ....++..|+|++..++...+..+.        +.+.+
T Consensus       190 ~~~LkaLGN~g~p----------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~  251 (336)
T d1lsha1         190 VLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLP  251 (336)
T ss_dssp             HHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHH
T ss_pred             HHHHHHHhccCCH----------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHH
Confidence            7789999998532          567888887743       2467999999999999877665443        44445


Q ss_pred             hc--CCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 015537          293 FL--MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (405)
Q Consensus       293 lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  358 (405)
                      +.  ...+.++|..|+..|-.  +... .       ..+..+...+..+++..|...+.-.|.|++..
T Consensus       252 i~~n~~e~~EvRiaA~~~lm~--t~P~-~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         252 IFLNVAIKSELRIRSCIVFFE--SKPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHCTTSCHHHHHHHHHHHHH--TCCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCCChHHHHHHHHHHHh--cCCC-H-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            54  33467899888887733  2222 1       23556777787776888988888889999873

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.014  Score=57.93  Aligned_cols=296  Identities=8%  Similarity=0.024  Sum_probs=146.6

Q ss_pred             CChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchhH-------HHHHh
Q 015537           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT-------KVVID  157 (405)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~~-------~~~~~  157 (405)
                      ..+.++..+++.+....... .  ...  -..+++.++.+|.+++ +.++..|++++..++.......       ...+.
T Consensus       470 ~~~~lr~~~~~~i~~~~~~~-~--~~~--~~~~~~~l~~~L~~~~-~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~  543 (959)
T d1wa5c_         470 PHIILRVDAIKYIYTFRNQL-T--KAQ--LIELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS  543 (959)
T ss_dssp             SCHHHHHHHHHHHHHTGGGS-C--HHH--HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT
T ss_pred             chHHHHHHHHHHHHHHHhhc-c--HHH--HHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHHhhcccccchhhccHHHHH
Confidence            34678888888888875432 1  111  1346899999999887 8999999999999986422110       00000


Q ss_pred             C---CChHHHHHhhCCCCH---H--HHHHHHHHHHHhh---CCC-hhhHHHHHhcCChHHHHHhh----hCCCchhHHHH
Q 015537          158 H---GAVPIFVKLLYSPSD---D--VREQAVWALGNIA---GDS-PRCRDLVLSQGGLVPLLAQL----NGQPKLSMLRN  221 (405)
Q Consensus       158 ~---g~i~~L~~lL~~~~~---~--i~~~a~~~L~nl~---~~~-~~~~~~i~~~~~i~~L~~~l----~~~~~~~~~~~  221 (405)
                      .   .++..++..+.....   .  ..+.++.++..+.   .+. .++...+     ++.+...+    .+..++.....
T Consensus       544 p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~~~~~~~~  618 (959)
T d1wa5c_         544 NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQL-----LAQFIEIVTIMAKNPSNPRFTHY  618 (959)
T ss_dssp             TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHH-----HHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCccchHHHHH
Confidence            0   223444444433211   1  1233455555543   221 2222222     23333332    23346677777


Q ss_pred             HHHHHHHhhcCC-CCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcc
Q 015537          222 ATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS  300 (405)
Q Consensus       222 a~~~l~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  300 (405)
                      +..++..+.... +.........++|.+...++....+....++..+..+..........+.  ..++.++.........
T Consensus       619 ~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~  696 (959)
T d1wa5c_         619 TFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK--PLAQPLLAPNVWELKG  696 (959)
T ss_dssp             HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG--GGHHHHTSGGGGCCTT
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHH--HHHHHHhhHHHHHHhh
Confidence            778888877654 2222333466778888887766655556666555554432211000000  1223333222222233


Q ss_pred             hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhCcHHHHHHHH
Q 015537          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQVIMHVHAFSIIVAFF  379 (405)
Q Consensus       301 v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~lL  379 (405)
                      ....+..++.++....+.....  ..+++..+..++.+. .  ....+...+..+....+ +.....+ ..++..++..|
T Consensus       697 ~~~~~~~~l~~~~~~~~~~~~~--~~~~l~~~~~~l~~~-~--~~~~~~~ll~~ii~~~~~~~~~~~l-~~i~~~~~~~l  770 (959)
T d1wa5c_         697 NIPAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASK-A--YEVHGFDLLEHIMLLIDMNRLRPYI-KQIAVLLLQRL  770 (959)
T ss_dssp             THHHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCT-T--THHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHGG
T ss_pred             hHHHHHHHHHHHHHhCHHhhcc--hHHHHHHHHHHHCCC-c--chHHHHHHHHHHHHHCchhhhHhHH-HHHHHHHHHHH
Confidence            3445555665555332211100  012455566666655 2  23556666766654322 2222111 12333444444


Q ss_pred             hcccccchhhhHHHHHHHHHhhhc
Q 015537          380 FMFLHFFFGAIIYKLAIWLCLVTC  403 (405)
Q Consensus       380 ~~~~~~~~~~~vr~~A~~al~n~~  403 (405)
                      ....    .+.+.+..+|.++.+|
T Consensus       771 ~~~~----~~~~~~~~~~~~~~~~  790 (959)
T d1wa5c_         771 QNSK----TERYVKKLTVFFGLIS  790 (959)
T ss_dssp             GSSC----CHHHHHHHHHHHHHHH
T ss_pred             Hhcc----cHHHHHHHHHHHHHHH
Confidence            3332    3456777788877665

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.68  E-value=0.0016  Score=53.27  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=17.8

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHH
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWAL  183 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L  183 (405)
                      .+..|..+++++++.|+..++..|
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHc
Confidence            356777788888888888877543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.58  E-value=0.00073  Score=55.39  Aligned_cols=22  Identities=14%  Similarity=0.230  Sum_probs=13.9

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHH
Q 015537          118 VPRFVEFLLREDYPQLQFEAAWA  140 (405)
Q Consensus       118 l~~Li~lL~~~~~~~~~~~a~~~  140 (405)
                      +..|..++++++ +.++..|++.
T Consensus        68 ~~~L~~Ll~D~d-~~VR~~AA~~   89 (233)
T d1lrva_          68 VEALTPLIRDSD-EVVRRAVAYR   89 (233)
T ss_dssp             GGGGGGGTTCSS-HHHHHHHHTT
T ss_pred             HHHHHHHhcCCC-HHHHHHHHHH
Confidence            345556666666 7777777654

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.012  Score=58.49  Aligned_cols=319  Identities=11%  Similarity=0.090  Sum_probs=155.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCch------HHHHh---cCcHHHHHHHhcCCCCHHH----HHHHHHH
Q 015537           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI------EEVIR---SGVVPRFVEFLLREDYPQL----QFEAAWA  140 (405)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~------~~~~~---~g~l~~Li~lL~~~~~~~~----~~~a~~~  140 (405)
                      .++.+++.|.+++..++..|+.++..++........      ...+.   ..++..++..+........    ...++.+
T Consensus       497 ~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~  576 (959)
T d1wa5c_         497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS  576 (959)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            367788888888999999999999998754311110      00010   1234555555544331111    1235555


Q ss_pred             HHHHhcCCchhHHHHHhCCChHHHHHhh----CC-CCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhhCCC
Q 015537          141 LTNIASGTSEHTKVVIDHGAVPIFVKLL----YS-PSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQP  214 (405)
Q Consensus       141 L~ni~~~~~~~~~~~~~~g~i~~L~~lL----~~-~~~~i~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~L~~~l~~~~  214 (405)
                      +..+.....+....... .+++.|...+    ++ .++.....+..+|+.+... ++.....+ ....++.+...+ ...
T Consensus       577 l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~~-~~~  653 (959)
T d1wa5c_         577 IFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVF-SED  653 (959)
T ss_dssp             HHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHH-HTT
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHH-hcc
Confidence            55544321111111110 1233444333    22 3567777788888887643 23232222 233566666666 444


Q ss_pred             chhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhc
Q 015537          215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (405)
Q Consensus       215 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL  294 (405)
                      .......+...+..+....+... ......++.+..............+...+.++....++.....  .+++..+..++
T Consensus       654 ~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~l~~~~~~l  730 (959)
T d1wa5c_         654 IQEFIPYVFQIIAFVVEQSATIP-ESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDL--VPVLGIFQRLI  730 (959)
T ss_dssp             CTTTHHHHHHHHHHHHHHCSSCC-TTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCS--HHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHhhcch--HHHHHHHHHHH
Confidence            44555566666666655443222 2223455554432222222223333333333322111110000  12344455556


Q ss_pred             CCCCcchHHHHHHHHhHhhcCChh-hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHh---
Q 015537          295 MHPSPSVLIPALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHV---  369 (405)
Q Consensus       295 ~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~---  369 (405)
                      .....  ...++..++.+...-+. .....+ ..++..+...+.+...+.+....+|.++.++. .++.....+++.   
T Consensus       731 ~~~~~--~~~~~~ll~~ii~~~~~~~~~~~l-~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  807 (959)
T d1wa5c_         731 ASKAY--EVHGFDLLEHIMLLIDMNRLRPYI-KQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQD  807 (959)
T ss_dssp             TCTTT--HHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTST
T ss_pred             CCCcc--hHHHHHHHHHHHHHCchhhhHhHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhch
Confidence            54433  34567777777654432 112112 13566666677766567788889999999975 456655555543   


Q ss_pred             CcHHHHH-HH-HhcccccchhhhHHHHHHHHHhhh
Q 015537          370 HAFSIIV-AF-FFMFLHFFFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       370 ~~i~~L~-~l-L~~~~~~~~~~~vr~~A~~al~n~  402 (405)
                      +.+..++ .. +...+ ...++.-||-.+.+++..
T Consensus       808 ~~~~~~~~~~~~~~~~-~~~~~~~~k~~~l~l~~l  841 (959)
T d1wa5c_         808 GLFQQIWGNFIITTLP-TIGNLLDRKIALIGVLNM  841 (959)
T ss_dssp             THHHHHHHHTHHHHGG-GCCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccc-ccCCHHHHHHHHHHHHHH
Confidence            4443332 22 22222 212334566666666654

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.098  Score=45.04  Aligned_cols=184  Identities=11%  Similarity=0.109  Sum_probs=117.5

Q ss_pred             HHHHHhhcCCC-hHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC----C------CCHHHHHHHHHHHHHH
Q 015537           76 PVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNI  144 (405)
Q Consensus        76 ~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~----~------~~~~~~~~a~~~L~ni  144 (405)
                      ..++..|++.- .+.....+..|+--+..++...++.+ ..+++..|+.+|..    .      .+...+.+++.||..+
T Consensus         5 ~~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkal   83 (343)
T d2bnxa1           5 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   83 (343)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHH
Confidence            35566666543 23344455666555555423345666 45567777777631    1      1256889999999999


Q ss_pred             hcCCchhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhhHHHHH----------hcCChHHHHHhhhC
Q 015537          145 ASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS--PRCRDLVL----------SQGGLVPLLAQLNG  212 (405)
Q Consensus       145 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~--~~~~~~i~----------~~~~i~~L~~~l~~  212 (405)
                      ..........+-..+++..++..|.++.+.++..++..|..+|...  +.....++          +.+-+.++++.+..
T Consensus        84 mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          84 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             hccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            8864434444455588999999999999999999999999998532  22233322          34557888888866


Q ss_pred             CCchhHHHHHHHHHHHhhcCCCCCChh------hh-hccHHHHHhhhcCCChHHH
Q 015537          213 QPKLSMLRNATWTLSNFCRGKPQPPFD------QV-SPALPALAHLIHSNDDEVL  260 (405)
Q Consensus       213 ~~~~~~~~~a~~~l~~l~~~~~~~~~~------~~-~~~l~~L~~ll~~~d~~v~  260 (405)
                      ..+.+....++..+..+..+.+.....      .. .|+.+.+-.+=..+++.+.
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~  218 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK  218 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred             cccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHHH
Confidence            667888888888888888775443221      11 4555555444444444433

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.25  E-value=0.053  Score=46.68  Aligned_cols=132  Identities=16%  Similarity=0.206  Sum_probs=84.4

Q ss_pred             cHHHHHhhhcC----CChHHHHHHHHHHHHhccC----ChhHHHHHHhcCChHHHH----HhcCCCCcchHHHHHHHHhH
Q 015537          244 ALPALAHLIHS----NDDEVLTDACWALSYLSDG----TNDKIQAVIEAGVFPRLA----EFLMHPSPSVLIPALRTVGN  311 (405)
Q Consensus       244 ~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~----~~~~~~~~~~~~~l~~L~----~lL~~~~~~v~~~a~~~l~n  311 (405)
                      .+..+..++++    .++.+...+..+++.+...    .+...     ..+++.+.    ......+.+-...++++|||
T Consensus       124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  198 (336)
T d1lsha1         124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGN  198 (336)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhc
Confidence            44455556554    4677888888888877632    11110     12233333    33455666667788999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHhhcCC------CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhccccc
Q 015537          312 IVTGDDMQTQCVIEYQALPCLLNLLSGN------YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIVAFFFMFLHF  385 (405)
Q Consensus       312 l~~~~~~~~~~~~~~g~l~~L~~ll~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~  385 (405)
                      +.  .+         +.++.|..++...      .+..+|..|.|++.+++...+..++.        .++.++.+... 
T Consensus       199 ~g--~p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~--------~l~~i~~n~~e-  258 (336)
T d1lsha1         199 AG--QP---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQE--------IVLPIFLNVAI-  258 (336)
T ss_dssp             HT--CG---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHH--------HHHHHHHCTTS-
T ss_pred             cC--CH---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHH--------HHHHHHcCCCC-
Confidence            85  33         3466677777532      25689999999999998877765443        44555544332 


Q ss_pred             chhhhHHHHHHHHHhhh
Q 015537          386 FFGAIIYKLAIWLCLVT  402 (405)
Q Consensus       386 ~~~~~vr~~A~~al~n~  402 (405)
                        ++++|-.|..+|..|
T Consensus       259 --~~EvRiaA~~~lm~t  273 (336)
T d1lsha1         259 --KSELRIRSCIVFFES  273 (336)
T ss_dssp             --CHHHHHHHHHHHHHT
T ss_pred             --ChHHHHHHHHHHHhc
Confidence              468999999998765

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.47  Score=40.27  Aligned_cols=190  Identities=12%  Similarity=0.050  Sum_probs=115.4

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCCC
Q 015537          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (405)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~  234 (405)
                      .++...+..|+.++.++|+.=|+....+|..+-+.-...|..+.. .+...+.+.+.......-...+++.+..+..+..
T Consensus       129 ~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~  207 (343)
T d2jaka1         129 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFA  207 (343)
T ss_dssp             TSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC
T ss_pred             hCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhcc
Confidence            344455788899999999999999999999988777667665544 2455666766555566667778888888888763


Q ss_pred             CC-ChhhhhccHHHHHhhhcCCC-hHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcCCCCcchHHHHHHHHhHh
Q 015537          235 QP-PFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (405)
Q Consensus       235 ~~-~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl  312 (405)
                      .+ ......-....++.|.++.. ...-..-..++..+...++.....++     ..++..-=..+..=...-+.-|..+
T Consensus       208 ~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~i-----~~llk~WP~t~~~Kev~FL~el~~i  282 (343)
T d2jaka1         208 LPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNELEEI  282 (343)
T ss_dssp             SSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHSSCSSCCTTHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHHH-----HHHHHhCCCCCchHHHHHHHHHHHH
Confidence            33 33333444456666665543 33344444555555555555444222     3444444223333344455556666


Q ss_pred             hcCCh-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 015537          313 VTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (405)
Q Consensus       313 ~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L  352 (405)
                      ...-+ ...+.+. ..+...+...+.++ +.+|.+.|...+
T Consensus       283 l~~~~~~~f~~~~-~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         283 LDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHhCCHHHHHHHH-HHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            54333 2222222 24677788888888 888888876555

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.95  E-value=1.6  Score=37.10  Aligned_cols=167  Identities=12%  Similarity=0.133  Sum_probs=104.1

Q ss_pred             CCchhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCc
Q 015537          147 GTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (405)
Q Consensus       147 ~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~  215 (405)
                      ....+.+.+ ..+|+..|+.+|..           .+......++.||..+..........+-..+++..+...+ .+++
T Consensus        34 ~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~  111 (343)
T d2bnxa1          34 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAV  111 (343)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTS
T ss_pred             CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHcc-CCCc
Confidence            334455555 34456666666631           1356788899999999877776666666677788888888 7889


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCCChHHHHHHHHHHHHhccCChhHHHHHHhcCChHHHHHhcC
Q 015537          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (405)
Q Consensus       216 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~L~~lL~  295 (405)
                      +.++..++..|..+|.......      +.+               .++.++.+..        ..-+.+-+..++..|.
T Consensus       112 ~~tr~~a~elL~~lc~~~~~~~------g~~---------------~vL~Al~~~~--------~~~e~~RF~~lv~~l~  162 (343)
T d2bnxa1         112 PNMMIDAAKLLSALCILPQPED------MNE---------------RVLEAMTERA--------EMDEVERFQPLLDGLK  162 (343)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTT------HHH---------------HHHHHHHHHH--------HHHTSCTTHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHHhccCCCc------hHH---------------HHHHHHHHHH--------HhcCCCcHHHHHHHHh
Confidence            9999999999999987532111      111               1111121111        1223345566777675


Q ss_pred             CC-CcchHHHHHHHHhHhhcCChh------hHHHHHhcCchHHHHHhhcCCCchhHH
Q 015537          296 HP-SPSVLIPALRTVGNIVTGDDM------QTQCVIEYQALPCLLNLLSGNYKKSIK  345 (405)
Q Consensus       296 ~~-~~~v~~~a~~~l~nl~~~~~~------~~~~~~~~g~l~~L~~ll~~~~~~~v~  345 (405)
                      .. +.+.+..++..|..++.+.+.      .+..+...|+.+.+-.+=... ++.+.
T Consensus       163 ~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~-~~~L~  218 (343)
T d2bnxa1         163 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK  218 (343)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC-CHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccC-ChHHH
Confidence            44 457777788888777776552      334556788887766665554 55444

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.24  E-value=0.91  Score=33.20  Aligned_cols=74  Identities=12%  Similarity=0.129  Sum_probs=60.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHhhcCC
Q 015537          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (405)
Q Consensus       160 ~i~~L~~lL~~~~~~i~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~  233 (405)
                      ++..|..-|+++++.++..|+..|-.+...+ +.++..+...+.+..|..++...++..|+..++..+...+...
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  117 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF  117 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            4667777888899999999999999888764 6677888888888889888866678889988888888777654

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=0.99  Score=32.98  Aligned_cols=76  Identities=8%  Similarity=-0.011  Sum_probs=56.7

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcC
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-----EDYPQLQFEAAWALTNIASG  147 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~-----~~~~~~~~~a~~~L~ni~~~  147 (405)
                      +.+..+.+.|++.++.++..|+..|-.+..........++.+.+++..|+.++..     .....++..++..|...+..
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            4577888888999999999999999877654323334567778899999999963     12268888888888776654


Q ss_pred             C
Q 015537          148 T  148 (405)
Q Consensus       148 ~  148 (405)
                      .
T Consensus       125 f  125 (145)
T d1ujka_         125 L  125 (145)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.79  E-value=7.1  Score=30.16  Aligned_cols=136  Identities=8%  Similarity=-0.045  Sum_probs=80.8

Q ss_pred             CCCchhHHHHHHHHHHHhhcCCCCCChhhhhccHHHHHhhhcCC-ChHHHHHHHHHHH-HhccCChhHHHHHHhcCChHH
Q 015537          212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPR  289 (405)
Q Consensus       212 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~l~~  289 (405)
                      .++.-+.+..++..+........       ...++.+..++.+. +-++....+..++ .+....++         ..+.
T Consensus        60 ~~~~~E~r~~a~~ll~~~~~~~~-------~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~~~---------~~~~  123 (213)
T d2b6ca1          60 QKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---------LPTI  123 (213)
T ss_dssp             TSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG---------HHHH
T ss_pred             cCchHHHHHHHHHHHHHHHhccC-------HHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhhhh---------HHHH
Confidence            55555666666665554443211       23345555666554 4555555555443 34333322         2356


Q ss_pred             HHHhcCCCCcchHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 015537          290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV  369 (405)
Q Consensus       290 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  369 (405)
                      +.....+++.-++..|+.+.-...  .....+.     ++..+..++.++ +.-|++.+.|+|..++..+|+.+...++.
T Consensus       124 l~~w~~s~~~w~rR~aiv~~l~~~--~~~~~~~-----~~~~~~~~~~d~-e~~i~kAigW~Lre~~k~~p~~v~~fl~~  195 (213)
T d2b6ca1         124 FALFYGAENFWNRRVALNLQLMLK--EKTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMKE  195 (213)
T ss_dssp             HHHHTTCSSHHHHHHHHHTTTTCG--GGCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHH--HcccHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHCHHHHHHHHHh
Confidence            667778888777776654432222  2222221     345566677777 88999999999999999999988877765


Q ss_pred             Cc
Q 015537          370 HA  371 (405)
Q Consensus       370 ~~  371 (405)
                      +.
T Consensus       196 ~~  197 (213)
T d2b6ca1         196 LV  197 (213)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.79  E-value=1.8  Score=36.48  Aligned_cols=179  Identities=15%  Similarity=0.105  Sum_probs=94.1

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCchh---
Q 015537           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH---  151 (405)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~~~~~~---  151 (405)
                      +..++..+.|.|+..+......++.+...  -...+.++...+...+.+++.......-..+.+++++.+..+-...   
T Consensus       135 i~~Ll~lf~S~D~rER~~lk~~l~~iy~k--f~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plke  212 (343)
T d2jaka1         135 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  212 (343)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCH
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchH
Confidence            46677778888888888888888877543  3555566666667777887765443445677788888877753221   


Q ss_pred             -HHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhhCCCchhHHHHHHHHHHHh
Q 015537          152 -TKVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (405)
Q Consensus       152 -~~~~~~~g~i~~L~~lL~~~~-~~i~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L~~~l~~~~~~~~~~~a~~~l~~l  229 (405)
                       -..+.    ...|+.+.+.+. ...-.+...++..+...++.....+     +..+++.- -.++..=....+.-+..+
T Consensus       213 eh~~f~----~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~-----i~~llk~W-P~t~~~Kev~FL~el~~i  282 (343)
T d2jaka1         213 EHKIFL----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEEI  282 (343)
T ss_dssp             HHHHHH----HHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSS-CSSCCTTHHHHHHHHHHH
T ss_pred             HHHHHH----HHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhC-CCCCchHHHHHHHHHHHH
Confidence             11122    223333444432 2233444455555544444332222     22333332 122222223333334444


Q ss_pred             hcCCCCCCh-hhhhccHHHHHhhhcCCChHHHHHHHH
Q 015537          230 CRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACW  265 (405)
Q Consensus       230 ~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~  265 (405)
                      ...-+.... .....+...+..++.+++-.|.+.|+.
T Consensus       283 l~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl~  319 (343)
T d2jaka1         283 LDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALY  319 (343)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHG
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            443322222 222456666777777777777776653

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.96  E-value=0.6  Score=34.23  Aligned_cols=74  Identities=12%  Similarity=0.061  Sum_probs=54.8

Q ss_pred             cCHHHHHHhhcCCChHHHHHHHHHHHHhhccCCCCchHHHHhcCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015537           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (405)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~l~~Li~lL~~~~~~~~~~~a~~~L~ni~~  146 (405)
                      +.+..+.+.+++.++.++..|+..|-.+...........+...+++..|..++++.....++..++..+...+.
T Consensus        42 ~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            35677888888899999999999988876543122334455677888888888765447888888888877655