Citrus Sinensis ID: 015548

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
MEVKDIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRSSSYRSMETENQDWSDQASTTDVLPYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVSLGILLKKVYCIIPFLINSASQMLIVHFSLSWIVIDNNKVDLFLFQ
cccccccccccccccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEccEEEEEccc
cccHHHcccccccccEEEEEEccccccHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHHccccEEEEEcccccccEEcccccccHHHHHHccccccEEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEcccEEEEEEc
mevkdivelpnspaLSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKllhvrpritsvptptslaighpvgnfipieQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKknnlssrisicvpsfctvygvekgklssvrpsdlgsigstkddssdtgcsnssssshnsssqtdLGSAVAsythssspslptQRLQALSAVNKTLlhlkpssteinhsrcqsfdveeqkdasssclsgpevrqtvsrsssyrsmetenqdwsdqasttdvlpydsssesqvdVNFELEKLRIELRHVRGMYAIAQNEANDASRKVSLGILLKKVYCIIPFLINSASQMLIVHFSLSWIvidnnkvdlflfq
mevkdivelpnspalsvAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEekwktdrlllpfrNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEkgklssvrpsdlgsigstkddssdtGCSNssssshnsssQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTLLHlkpssteinhSRCQSFDVEEQKdasssclsgpevrqtvsrsssyrsmetenqdwsdqastTDVLpydsssesqvdvNFELEKLRIELRHVRGMYAIAqneandasrKVSLGILLKKVYCIIPFLINSASQMLIVHFSLSWIVIDNNKVDLFLFQ
MEVKDIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTKddssdtgcsnssssshnsssQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRSSSYRSMETENQDWSDQASTTDVLPYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVSLGILLKKVYCIIPFLINSASQMLIVHFSLSWIVIDNNKVDLFLFQ
**************LSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEK****************************************************************************************************************************************************DVNFELEKLRIELRHVRGMYAIAQNEANDASRKVSLGILLKKVYCIIPFLINSASQMLIVHFSLSWIVIDNNKVDLFLF*
****************VAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHP*G**I*************KQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIF*******NLSSRISICVPSFCTVYGVEKGKL********************************************************************************************************************************************************KLRIELRHVRGMYAIAQN*****SRKVSLGILLKKVYCIIPFLINSASQMLIVHFSLSWIVIDNNKVDLFLFQ
MEVKDIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVR***************************************************TQRLQALSAVNKTLLHLKPSS********************************************************************VDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVSLGILLKKVYCIIPFLINSASQMLIVHFSLSWIVIDNNKVDLFLFQ
***********SPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPS*****************************************************************************************************************************************QVDVNFELEKLRIELRHVRGMYAIAQNEANDASRKVSLGILLKKVYCIIPFLINSASQMLIVHFSLSWIVIDNNKVDLFLFQ
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MEVKDIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRSSSYRSMETENQDWSDQASTTDVLPYDSSSESQVDVNFExxxxxxxxxxxxxxxxxxxxxANDASRKVSLGILLKKVYCIIPFLINSASQMLIVHFSLSWIVIDNNKVDLFLFQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query405 2.2.26 [Sep-21-2011]
Q9SW11 835 U-box domain-containing p yes no 0.817 0.396 0.422 4e-62
Q9FKG5 796 U-box domain-containing p no no 0.772 0.393 0.387 3e-48
Q9FKG6 845 U-box domain-containing p no no 0.804 0.385 0.361 2e-47
Q9LU47 819 Putative U-box domain-con no no 0.8 0.395 0.317 6e-33
Q8GUH1 834 U-box domain-containing p no no 0.367 0.178 0.245 2e-07
Q8S8S7 801 U-box domain-containing p no no 0.234 0.118 0.348 8e-05
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2 Back     alignment and function desciption
 Score =  239 bits (609), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 158/374 (42%), Positives = 220/374 (58%), Gaps = 43/374 (11%)

Query: 16  SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIP 75
           +V VA+ G+ KS+Y V WA+EKF  EG   FKLLH+ P ITSVPTP        +GN IP
Sbjct: 21  TVVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPTP--------MGNAIP 72

Query: 76  IEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCN 135
           I +VRDDV  AY+QE  W+++ +L P+  +  +R+V VEV VIESD+VA AIA+EV   +
Sbjct: 73  ISEVRDDVVTAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDS 132

Query: 136 INKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLGSIGSTK 195
           I+++VIG  S+  F+   +K ++ S IS  +P+FCTVY V KGKLS VRPSD     + +
Sbjct: 133 IDRIVIGGSSRSFFS---RKADICSVISALMPNFCTVYVVSKGKLSCVRPSDSDGNATIR 189

Query: 196 DDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSLPTQRLQALSAV-NKTLLHLKP 254
           +D S+   S+S SS   S S   + SA  S   S   SLP +R+Q   A+  +  + ++ 
Sbjct: 190 EDGSERTNSSSGSSGPTSDSSDVMSSAHDS--QSRPLSLPVRRMQHFPAIAGQASVPMET 247

Query: 255 SSTEINHSRCQSFDVEEQKDASSSCLSG--------------PEVRQTVSRSSSYR---- 296
           SS   + +RC S D EE +D SS   S                E ++ +S SSS R    
Sbjct: 248 SSVGSDETRCMSLDAEEARDVSSINRSSTDTTSRWTPRRRDYEERKEAMSSSSSNREYGN 307

Query: 297 ----------SMETENQDWSDQAST-TDVLPYDSSSESQVDVNFELEKLRIELRHVRGMY 345
                      ++T +   S QAS  +D L   S +++QV++NFE+EKLR ELRHV+ MY
Sbjct: 308 FGTRFSWSGMGVDTTHSRASQQASNMSDALSEQSYTDNQVNLNFEVEKLRAELRHVQEMY 367

Query: 346 AIAQNEANDASRKV 359
           A+AQ E  DASRK+
Sbjct: 368 AVAQTETFDASRKL 381
Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1 Back     alignment and function description
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2 Back     alignment and function description
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
359490160 804 PREDICTED: U-box domain-containing prote 0.856 0.431 0.555 6e-98
147858097 804 hypothetical protein VITISV_021538 [Viti 0.856 0.431 0.555 1e-97
297745064 784 unnamed protein product [Vitis vinifera] 0.807 0.417 0.536 4e-91
255588643364 hypothetical protein RCOM_2090500 [Ricin 0.792 0.881 0.535 2e-89
449451988 836 PREDICTED: U-box domain-containing prote 0.824 0.399 0.527 2e-81
357455815 809 U-box domain-containing protein [Medicag 0.814 0.407 0.517 1e-78
357455813 797 U-box domain-containing protein [Medicag 0.824 0.419 0.481 2e-71
356508200 785 PREDICTED: U-box domain-containing prote 0.777 0.401 0.472 4e-70
449488729 1074 PREDICTED: U-box domain-containing prote 0.728 0.274 0.519 2e-67
297799476 832 kinase family protein [Arabidopsis lyrat 0.809 0.394 0.419 2e-61
>gi|359490160|ref|XP_002266973.2| PREDICTED: U-box domain-containing protein 35-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  363 bits (933), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 204/367 (55%), Positives = 263/367 (71%), Gaps = 20/367 (5%)

Query: 1   MEVKDIVELPNSPAL------SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPR 54
           ME K+I+E     AL      ++AVA+ G +KS+Y V WALEKF+PEG+++FK+LHVRP+
Sbjct: 1   MEAKEIIEEKQELALALPLPSTIAVAINGKKKSKYVVRWALEKFVPEGLHMFKMLHVRPK 60

Query: 55  ITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVE 114
           ITSVPTP        +GN IP+ QVRDDVAAAY +E  W+T  +LLP++ M   ++V+V+
Sbjct: 61  ITSVPTP--------MGNSIPLSQVRDDVAAAYLEEMGWQTSEMLLPYKTMFLHKKVQVD 112

Query: 115 VKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYG 174
           V VIESDDVAKAIA+E+A   I+KLVIGA S G+F+ K K  +LS RIS C PSFCTVY 
Sbjct: 113 VVVIESDDVAKAIAEEIAKSTIHKLVIGASSSGMFSRKVKGQSLSLRISECTPSFCTVYT 172

Query: 175 VEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLGSAVASYTHSSSPSL 234
           V KG+LSSVRPSD    GS K+DSSD    +S++SS + +S    GSA ASY+H  SPSL
Sbjct: 173 VSKGQLSSVRPSDSDKNGSIKEDSSDA---SSTTSSSSHTSSPHAGSA-ASYSHFHSPSL 228

Query: 235 PTQRLQALSAVNKTLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSRSSS 294
           P QR QALS +N+TLLH +  S E N SR QS D+ E++   S C S  ++    S+ SS
Sbjct: 229 PMQRFQALSTINRTLLHTRTGSIETNSSRRQSLDIREEESFMSPCPSNSDIGYAPSQVSS 288

Query: 295 YRSMETENQDW-SDQASTTDVLPYDSSSESQVDVNFELEKLRIELRHVRGMYAIAQNEAN 353
            RS  T++Q W SDQAST+D    +SSS SQV++NFELEKLR+ELRHVRG+YA+AQ+E  
Sbjct: 289 ARSFLTDDQSWISDQASTSDAF-TESSSGSQVNINFELEKLRVELRHVRGIYAMAQSENI 347

Query: 354 DASRKVS 360
           DASRK++
Sbjct: 348 DASRKLN 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147858097|emb|CAN78862.1| hypothetical protein VITISV_021538 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745064|emb|CBI38656.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255588643|ref|XP_002534671.1| hypothetical protein RCOM_2090500 [Ricinus communis] gi|223524795|gb|EEF27713.1| hypothetical protein RCOM_2090500 [Ricinus communis] Back     alignment and taxonomy information
>gi|449451988|ref|XP_004143742.1| PREDICTED: U-box domain-containing protein 35-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357455815|ref|XP_003598188.1| U-box domain-containing protein [Medicago truncatula] gi|355487236|gb|AES68439.1| U-box domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357455813|ref|XP_003598187.1| U-box domain-containing protein [Medicago truncatula] gi|355487235|gb|AES68438.1| U-box domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356508200|ref|XP_003522847.1| PREDICTED: U-box domain-containing protein 35-like [Glycine max] Back     alignment and taxonomy information
>gi|449488729|ref|XP_004158155.1| PREDICTED: U-box domain-containing protein 35-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297799476|ref|XP_002867622.1| kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297313458|gb|EFH43881.1| kinase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
TAIR|locus:2117343 835 AT4G25160 [Arabidopsis thalian 0.708 0.343 0.394 2.7e-46
TAIR|locus:2151641 796 AT5G61560 [Arabidopsis thalian 0.777 0.395 0.372 9.6e-46
TAIR|locus:2176177 819 AT5G51270 [Arabidopsis thalian 0.814 0.402 0.301 5.6e-33
TAIR|locus:2128131 764 AT4G31230 [Arabidopsis thalian 0.387 0.205 0.321 1.7e-17
TAIR|locus:2061012 788 AT2G24370 [Arabidopsis thalian 0.390 0.200 0.285 1.7e-15
TAIR|locus:2149244394 AT5G20310 "AT5G20310" [Arabido 0.254 0.261 0.336 1.2e-13
TAIR|locus:2015656 758 AT1G16760 [Arabidopsis thalian 0.271 0.145 0.336 1.6e-13
TAIR|locus:2087610 780 AT3G20200 [Arabidopsis thalian 0.232 0.120 0.368 2.1e-13
TAIR|locus:2063601 700 AT2G07020 [Arabidopsis thalian 0.261 0.151 0.339 3.3e-13
TAIR|locus:2143094 701 AT5G12000 [Arabidopsis thalian 0.219 0.126 0.326 6.5e-13
TAIR|locus:2117343 AT4G25160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 492 (178.3 bits), Expect = 2.7e-46, P = 2.7e-46
 Identities = 121/307 (39%), Positives = 173/307 (56%)

Query:    10 PNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHP 69
             P  P+ +V VA+ G+ KS+Y V WA+EKF  EG   FKLLH+ P ITSVPTP        
Sbjct:    15 PPPPSRTVVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPTP-------- 66

Query:    70 VGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIAD 129
             +GN IPI +VRDDV  AY+QE  W+++ +L P+  +  +R+V VEV VIESD+VA AIA+
Sbjct:    67 MGNAIPISEVRDDVVTAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAE 126

Query:   130 EVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKGKLSSVRPSDLG 189
             EV   +I+++VIG  S+  F+   +K ++ S IS  +P+FCTVY V KGKLS VRPSD  
Sbjct:   127 EVTRDSIDRIVIGGSSRSFFS---RKADICSVISALMPNFCTVYVVSKGKLSCVRPSDSD 183

Query:   190 SIGSTKXXXXXXXXXXXXXXXXXXXXQTDLGSAVASYTHSSSP-SLPTQRLQALSAV-NK 247
                +T                      +D+ S+  ++   S P SLP +R+Q   A+  +
Sbjct:   184 G-NATIREDGSERTNSSSGSSGPTSDSSDVMSS--AHDSQSRPLSLPVRRMQHFPAIAGQ 240

Query:   248 TLLHLKPSSTEINHSRCQSFDVEEQKDASSSCLSGPEVRQTVSR-SSSYRSMETENQDWS 306
               + ++ SS   + +RC S D EE +D SS   S  +   T SR +   R  E   +  S
Sbjct:   241 ASVPMETSSVGSDETRCMSLDAEEARDVSSINRSSTD---TTSRWTPRRRDYEERKEAMS 297

Query:   307 DQASTTD 313
               +S  +
Sbjct:   298 SSSSNRE 304
GO:0000151 "ubiquitin ligase complex" evidence=IEA
GO:0004672 "protein kinase activity" evidence=IEA
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016567 "protein ubiquitination" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0002238 "response to molecule of fungal origin" evidence=RCA
TAIR|locus:2151641 AT5G61560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176177 AT5G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128131 AT4G31230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061012 AT2G24370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149244 AT5G20310 "AT5G20310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015656 AT1G16760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087610 AT3G20200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063601 AT2G07020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143094 AT5G12000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 3e-47
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 4e-08
pfam00582139 pfam00582, Usp, Universal stress protein family 3e-04
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
 Score =  158 bits (401), Expect = 3e-47
 Identities = 70/163 (42%), Positives = 98/163 (60%), Gaps = 17/163 (10%)

Query: 16  SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIP 75
           SVAVAV  ++KS+ A+ WAL+    +G     L+HV P ITS+P+ +             
Sbjct: 1   SVAVAVDKDKKSKNALKWALDNLATKGQT-IVLVHVHPPITSIPSSSG------------ 47

Query: 76  IEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCN 135
               + +VA+AYKQEE  +   LLLP+R  C+++ V+ E  V+E DDVAKAI + VA   
Sbjct: 48  ----KLEVASAYKQEEDKEAKELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHG 103

Query: 136 INKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGVEKG 178
           I KLV+GA S   F+ KFKK++++S +    P FCTVY V KG
Sbjct: 104 ITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSKG 146

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 405
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.94
PRK15456142 universal stress protein UspG; Provisional 99.88
PRK15005144 universal stress protein F; Provisional 99.87
PRK09982142 universal stress protein UspD; Provisional 99.83
PRK15118144 universal stress global response regulator UspA; P 99.83
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.82
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.81
cd01987124 USP_OKCHK USP domain is located between the N-term 99.81
PRK10116142 universal stress protein UspC; Provisional 99.79
PRK11175305 universal stress protein UspE; Provisional 99.78
PRK11175305 universal stress protein UspE; Provisional 99.72
cd00293130 USP_Like Usp: Universal stress protein family. The 99.68
COG0589154 UspA Universal stress protein UspA and related nuc 99.65
PRK12652357 putative monovalent cation/H+ antiporter subunit E 99.39
PRK10490 895 sensor protein KdpD; Provisional 99.16
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.02
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 97.46
PLN03159832 cation/H(+) antiporter 15; Provisional 96.95
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 96.55
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 95.36
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 95.14
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 92.73
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 92.32
PLN03159832 cation/H(+) antiporter 15; Provisional 91.78
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 89.88
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 86.96
PRK13820394 argininosuccinate synthase; Provisional 84.56
PRK12342254 hypothetical protein; Provisional 83.86
PRK05253301 sulfate adenylyltransferase subunit 2; Provisional 83.18
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 81.86
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
Probab=99.94  E-value=6.1e-26  Score=198.47  Aligned_cols=146  Identities=49%  Similarity=0.768  Sum_probs=122.6

Q ss_pred             eEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 015548           16 SVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT   95 (405)
Q Consensus        16 kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~~~~   95 (405)
                      +||||+|+|+.|++|++||++++...+.. +++|||.++....++.        .+.        .+..+.+.++.+++.
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~-l~ll~v~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~   63 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQT-IVLVHVHPPITSIPSS--------SGK--------LEVASAYKQEEDKEA   63 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCc-EEEEEeccCcccCCCC--------ccc--------hHHHHHHHHHHHHHH
Confidence            59999999999999999999988777665 9999999875322110        010        112334555666778


Q ss_pred             HHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceEEEE
Q 015548           96 DRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTVYGV  175 (405)
Q Consensus        96 ~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~VlVV  175 (405)
                      +++|+++.+.|...|++++..++++|+|++.|+++|+++++|+||||+||++++.++++|++|+.+|++++|.+|||+||
T Consensus        64 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv  143 (146)
T cd01989          64 KELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVV  143 (146)
T ss_pred             HHHHHHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEE
Confidence            89999999999888999999988867999999999999999999999999999999999866999999999999999999


Q ss_pred             eCC
Q 015548          176 EKG  178 (405)
Q Consensus       176 ~kg  178 (405)
                      ++|
T Consensus       144 ~~~  146 (146)
T cd01989         144 SKG  146 (146)
T ss_pred             eCc
Confidence            987

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 3e-06
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 60/446 (13%), Positives = 117/446 (26%), Gaps = 167/446 (37%)

Query: 2   EVKDIVELPNSPALSVAVAVKGNRKSR-YAVLWAL--------EKFIPEGIN-----LFK 47
           E+  I+                +  S    + W L        +KF+ E +      L  
Sbjct: 50  EIDHIIMSK-------------DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 48  LLHVRPRITSVPTPTSLAIGHPVGN----FIP--------IEQVRD-------------- 81
            +    R  S+ T   +     + N    F            ++R               
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 82  ------------DVAAAYKQEEK------W-------KTDRLLLPFRNMCAQRRVEVEVK 116
                       DV  +YK + K      W         + +L   + +  Q    ++  
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ----IDPN 212

Query: 117 VIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNL-------SSRISICVPSF 169
                D +  I   + S       I A+ + +   K  +N L       +++      +F
Sbjct: 213 WTSRSDHSSNIKLRIHS-------IQAELRRLLKSKPYENCLLVLLNVQNAKA---WNAF 262

Query: 170 ---CTVYGVEKGKLSSVRPSDLGSIGSTKDDSSDTGCSNSSSSSHNSSSQTDLG------ 220
              C +       L + R                T   ++++++H S     +       
Sbjct: 263 NLSCKI-------LLTTR------------FKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 221 -SAVASYTHSSSPSLPTQRLQALSAVNKTLLHLKPSSTEINHSRCQSF---DVEEQKDAS 276
            S +  Y       LP + L      N   L +   S     +   ++   + ++     
Sbjct: 304 KSLLLKYLDCRPQDLPREVLT----TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 277 SSC---LSGPEVRQTVSRSSSYRSMETENQD-----------WSDQASTTDVLPYDSSSE 322
            S    L   E R+       +  +                 W D             S+
Sbjct: 360 ESSLNVLEPAEYRK------MFDRLSVFPPSAHIPTILLSLIWFD----------VIKSD 403

Query: 323 SQVDVNFELEKLR-IELRHVRGMYAI 347
             V VN +L K   +E +      +I
Sbjct: 404 VMVVVN-KLHKYSLVEKQPKESTISI 428
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.9
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.9
3fg9_A156 Protein of universal stress protein USPA family; A 99.88
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.88
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.87
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.87
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.87
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.87
3dlo_A155 Universal stress protein; unknown function, struct 99.86
3tnj_A150 Universal stress protein (USP); structural genomic 99.86
2z08_A137 Universal stress protein family; uncharacterized c 99.85
3fdx_A143 Putative filament protein / universal stress PROT; 99.83
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.79
3olq_A319 Universal stress protein E; structural genomics, P 99.79
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.77
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.76
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.75
3loq_A294 Universal stress protein; structural genomics, PSI 99.75
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.74
3olq_A319 Universal stress protein E; structural genomics, P 99.73
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.72
3loq_A294 Universal stress protein; structural genomics, PSI 99.71
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.71
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.6
3a2k_A464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 92.34
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 90.96
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 83.44
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
Probab=99.90  E-value=1.1e-22  Score=178.15  Aligned_cols=149  Identities=7%  Similarity=0.006  Sum_probs=119.0

Q ss_pred             CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCC-----CCCCCCCccccCCCCC-Cc--c-cccccchHH
Q 015548           13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRI-----TSVPTPTSLAIGHPVG-NF--I-PIEQVRDDV   83 (405)
Q Consensus        13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~-----~~~ptp~~~~~~~~~G-~~--v-p~s~~~~d~   83 (405)
                      .+++||||+|+|+.+..|++||++++...+. ++++|||.++.     ....          .+ ..  + |.   ..+.
T Consensus         4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a-~l~ll~v~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~   69 (162)
T 1mjh_A            4 MYKKILYPTDFSETAEIALKHVKAFKTLKAE-EVILLHVIDEREIKKRDIFS----------LLLGVAGLNKS---VEEF   69 (162)
T ss_dssp             CCCEEEEECCSCHHHHHHHHHHHHTCCSSCC-EEEEEEEEEGGGTC------------------------------CHHH
T ss_pred             ccceEEEEeCCCHHHHHHHHHHHHHHhhcCC-eEEEEEEecCcccccccccc----------ccccccccccc---hhhh
Confidence            5799999999999999999999998876666 59999999864     1100          11 00  1 11   0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHh
Q 015548           84 AAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRIS  163 (405)
Q Consensus        84 ~~~~~~e~~~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vv  163 (405)
                      .+.+.++.++..++.|+.+.+.+...|++++..+.. |+++++|+++|+++++|+||||++|++++.++++|| ++.+|+
T Consensus        70 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~-G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GS-v~~~vl  147 (162)
T 1mjh_A           70 ENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVV-GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGS-VTENVI  147 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEcC-CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecc-hHHHHH
Confidence            234555666778888999998898899999888766 899999999999999999999999999999999997 999999


Q ss_pred             hhCCCCceEEEEeCCc
Q 015548          164 ICVPSFCTVYGVEKGK  179 (405)
Q Consensus       164 k~ap~~C~VlVV~kgk  179 (405)
                      ++++  |||+||+.+.
T Consensus       148 ~~~~--~pVlvv~~~~  161 (162)
T 1mjh_A          148 KKSN--KPVLVVKRKN  161 (162)
T ss_dssp             HHCC--SCEEEECCCC
T ss_pred             HhCC--CCEEEEeCCC
Confidence            9998  9999997653
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 405
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 3e-04
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 11/127 (8%)

Query: 27  SRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAA 86
            + A  W LEK +    + FK+L +      V              +   E  RD     
Sbjct: 23  CKRAFEWTLEKIVRSNTSDFKILLL-----HVQVVDEDGFDDVDSIYASPEDFRD----- 72

Query: 87  YKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQ 146
            +Q  K K   LL  F N C +  V  E   I++ D    I  EV     + LV+G++  
Sbjct: 73  MRQSNKAKGLHLLEFFVNKCHEIGVGCEA-WIKTGDPKDVICQEVKRVRPDFLVVGSRGL 131

Query: 147 GIFTWKF 153
           G F   F
Sbjct: 132 GRFQKVF 138

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.93
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.92
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.89
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.87
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.81
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.81
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 95.1
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 88.39
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=3.8e-25  Score=192.34  Aligned_cols=157  Identities=8%  Similarity=0.010  Sum_probs=123.8

Q ss_pred             CCCeEEEeecCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCCCCCCCccccCCCCCCcccccccchHHHHHHHHHHH
Q 015548           13 PALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEK   92 (405)
Q Consensus        13 ~~~kILVAVDgS~~S~~AL~wAl~~a~~~g~~~l~LLHV~~~~~~~ptp~~~~~~~~~G~~vp~s~~~~d~~~~~~~e~~   92 (405)
                      -+++||||||+|+.|++|++||++++...++ +|+||||.++......+.   .....+. .......++....+.+...
T Consensus         2 m~~~ILvavD~s~~s~~al~~a~~la~~~~a-~l~llhV~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~   76 (160)
T d1mjha_           2 MYKKILYPTDFSETAEIALKHVKAFKTLKAE-EVILLHVIDEREIKKRDI---FSLLLGV-AGLNKSVEEFENELKNKLT   76 (160)
T ss_dssp             CCCEEEEECCSCHHHHHHHHHHHHTCCSSCC-EEEEEEEEEGGGTC---------------------CHHHHHHHHHHHH
T ss_pred             CcCeEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEEEeccccccccccc---ccccccc-cccchhHHHHHHHHHHHHH
Confidence            3699999999999999999999998877766 599999997753222110   0000000 0011222344555666777


Q ss_pred             HHHHHHHHHHHHHhhhcCCcEEEEEEecCCHHHHHHHHHHhCCCCEEEEccCCCCCcccccccchhhHHHhhhCCCCceE
Q 015548           93 WKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCNINKLVIGAQSQGIFTWKFKKNNLSSRISICVPSFCTV  172 (405)
Q Consensus        93 ~~~~~~L~~~~~~~~~~gV~ve~vvle~Gd~aeaIvd~A~e~~aDlIVmGs~g~s~l~r~~lGSsVs~~Vvk~ap~~C~V  172 (405)
                      +++++.|+.+.+.|...|++++..+.. |+|++.|+++|+++++|+||||+||++++.++|+|| ++.+|+++++  |||
T Consensus        77 ~~~~~~l~~~~~~~~~~gv~~~~~~~~-G~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS-~a~~vl~~s~--~pV  152 (160)
T d1mjha_          77 EEAKNKMENIKKELEDVGFKVKDIIVV-GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGS-VTENVIKKSN--KPV  152 (160)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCH-HHHHHHHHCC--SCE
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEEEe-ccHHHHHhhhhhccccceEEeccCCCCcccccccCc-HHHHHHhcCC--CCE
Confidence            888899999999999999999998876 899999999999999999999999999999999997 9999999998  999


Q ss_pred             EEEeCC
Q 015548          173 YGVEKG  178 (405)
Q Consensus       173 lVV~kg  178 (405)
                      |||++.
T Consensus       153 lvV~~~  158 (160)
T d1mjha_         153 LVVKRK  158 (160)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            999875
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure