Citrus Sinensis ID: 015554

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVRAPPQHPPPQHHFQDFTHF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHccccEEEEcccccccccccccccEEEEcccccccccccccccccccccccccccEEEEEEEEccEEEEEEEccccccccccHHHHHHHHHcccccEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccccHcccccccccEEcccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccHHcccEEEEEEcccccccccccEEEEEEEEcccccEEEEccccccccccccccccEEEEEEEEEcccEEEEEEcccccccccHHHHHHHHHHccccEEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mtrvsrdfgntmqkdavpavsadvvfassrfpnykigannqvvdgkddpkvlSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRgrvagrnkDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMlhqpskvmDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLsdsyeldgsealgsylrikpcsnngpelskcsiqwyrvpseggkrelisgatksvyapepfdvGRILQAEITYNGQqitltttgavdpapglgSYVEALVRKHdvefhvrappqhpppqhhfqdfthf
Flexible Loop (DISEMBL)
mtrvsrdfgntmqkdavpavSADVVFASSrfpnykigannqvvdgkddPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALEslrgrvagrnkdDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEheqmsrasgkqdfEELMKEVQEARRIKMlhqpskvmdMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEeklsdsyeldGSEALGSYLRIKPCsnngpelskcSIQWYRVPSEGGKRELIsgatksvyapepFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVRappqhpppqhhFQDFTHF
Low Complexity Region (SEG)
MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFekglaaaaklseeaklreaaslekHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVRAppqhpppqhhfqDFTHF
Disordered region (IsUnstruct)
*******************VSADVVFASSRFPNYKIGANNQVV**************************************************************HVLLKKLRDAL**************VEEAIAMVEALAVQLTQRE**LI**********************************************************************************************ALRIQLAEKSKCSLLLRK***********************LGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHV*******************
Disordered Region (DISOPRED)
**********************************KI************************************************************************************************************************************************************************************************************************************************************LG**LR**P****GPELSKCSIQWYRVPSE*****LISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVRAPPQHPPPQHHFQDFTHF
Disordered Region (DISEMBL)
*********NTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESA************************DFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVRAPPQHPPPQHHFQDFTHF
Disordered Region (DISPRO)
**************DAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSR****QDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVRAPPQH*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNxxxxxxxxxxxxxxxxxxxxxEGELIQEKAEVKKLADFLKKASEDAKKLVDEExxxxxxxxxxxxxxxxxxxxxxxxxxxxSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVRAPPQHPPPQHHFQDFTHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
255564494	494	transcription factor, putative [Ricinus	0.953	0.781	0.865	0.0
224103993	494	predicted protein [Populus trichocarpa]	0.953	0.781	0.862	0.0
224059678	494	predicted protein [Populus trichocarpa]	0.953	0.781	0.854	0.0
356548039	493	PREDICTED: uncharacterized protein LOC10	0.982	0.807	0.798	0.0
297825901	496	hypothetical protein ARALYDRAFT_481549 [	0.953	0.778	0.818	0.0
356554191	494	PREDICTED: uncharacterized protein LOC10	0.953	0.781	0.813	0.0
296083935	529	unnamed protein product [Vitis vinifera]	0.953	0.729	0.824	1e-180
15225786	496	plectin-related protein [Arabidopsis tha	0.953	0.778	0.810	1e-180
225435953	496	PREDICTED: uncharacterized protein LOC10	0.953	0.778	0.824	1e-180
356574113	493	PREDICTED: uncharacterized protein LOC10	0.982	0.807	0.788	1e-180

>gi|255564494|ref|XP_002523243.1| transcription factor, putative [Ricinus communis] gi|223537539|gb|EEF39164.1| transcription factor, putative [Ricinus communis]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/386 (86%), Positives = 366/386 (94%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTR +RDFG+TM+KDAVPAVSADV+FASSRFPNY++GANNQ++D KDDPKV+SMKEVVAR
Sbjct: 1   MTRATRDFGDTMRKDAVPAVSADVIFASSRFPNYRLGANNQILDAKDDPKVMSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETA LLEQQKRLSVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETAMLLEQQKRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRV G+NKDDVEEAIAMVEALAVQLTQREGELIQEKAEVK+LA+FLK+ASEDAKKLVDEE
Sbjct: 121 GRVVGKNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKRLANFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFARAEIESARAAVQRVEE+LQEHE++SRASGKQD EELMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RAFARAEIESARAAVQRVEEALQEHERVSRASGKQDLEELMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHELRALRIQLAEKSK SLLL+KELA S+R E+ +S SYEL+GSE LGSYL+I PC +
Sbjct: 241 DMEHELRALRIQLAEKSKRSLLLQKELARSRRGEQNISQSYELNGSETLGSYLQINPCCD 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N P LSKCSIQWYRV SEGGKRELISGATKSVYAPEPFDVGR++Q EI  +GQQITLTT+
Sbjct: 301 NVPVLSKCSIQWYRVSSEGGKRELISGATKSVYAPEPFDVGRVVQVEIIADGQQITLTTS 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHV 386
           GA+DPA GLGSYVEALVRKHDVEF+V
Sbjct: 361 GAIDPAAGLGSYVEALVRKHDVEFNV 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103993|ref|XP_002313274.1| predicted protein [Populus trichocarpa] gi|222849682|gb|EEE87229.1| predicted protein [Populus trichocarpa]

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/386 (86%), Positives = 361/386 (93%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRV+RDFG+TMQKDAVPAVSADV FASSRFPNYKIGANNQ+VD KD PKVLSMKEVVAR
Sbjct: 1   MTRVTRDFGDTMQKDAVPAVSADVAFASSRFPNYKIGANNQIVDAKDSPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETA LLEQQKRLSVRDLANKFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETALLLEQQKRLSVRDLANKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIAMVEALAVQLT REGELIQEKAEVKKLA+FLK+ASEDAKKLVD E
Sbjct: 121 GRVAGRNKDDVEEAIAMVEALAVQLTHREGELIQEKAEVKKLANFLKQASEDAKKLVDGE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RA+ARAEIESARAAVQRVEE++QEHE+MSRASGKQD EELMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RAYARAEIESARAAVQRVEEAIQEHERMSRASGKQDLEELMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHE+RALRIQLAEKSK SLLL+KELA S+R E+ +   +ELDG+EALGS LRI PCS+
Sbjct: 241 DMEHEIRALRIQLAEKSKRSLLLQKELARSRRAEQSIFQLFELDGTEALGSCLRINPCSD 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N PELSKCSIQWYR+ S+GGK+ELISGATK VYAPEPFDVGR+LQAEI  +GQQ +L+TT
Sbjct: 301 NAPELSKCSIQWYRLSSDGGKKELISGATKPVYAPEPFDVGRVLQAEIISDGQQFSLSTT 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHV 386
             +DPA GLGSYVEALVRKHDVEF+V
Sbjct: 361 CPIDPAAGLGSYVEALVRKHDVEFNV 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059678|ref|XP_002299966.1| predicted protein [Populus trichocarpa] gi|222847224|gb|EEE84771.1| predicted protein [Populus trichocarpa]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/386 (85%), Positives = 356/386 (92%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRV+RDFG+TMQKDAV AVSADV FASSRFPNYKIGA NQ++D KDDPKVLSMKEVVAR
Sbjct: 1   MTRVTRDFGDTMQKDAVLAVSADVAFASSRFPNYKIGATNQILDAKDDPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETA LLEQQKRLSVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETALLLEQQKRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RA+ARAEIESARA VQRVEE+LQEHE+MSRA GKQD EELMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RAYARAEIESARATVQRVEEALQEHERMSRALGKQDLEELMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHELRALR+QLAEKSKCSL L+KELA S+R  + +   +ELDGSEALGS LRI PCS 
Sbjct: 241 DMEHELRALRMQLAEKSKCSLQLQKELARSRRGGQSMFHLFELDGSEALGSCLRINPCSE 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N PELS+CSIQW+R+ SE  K+ LISGATK VYAPEPFDVGR+LQAEI  +GQQ TLTTT
Sbjct: 301 NAPELSECSIQWFRLSSEDVKKALISGATKPVYAPEPFDVGRVLQAEIISDGQQFTLTTT 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHV 386
            A+DPA GLGSYVEALVRKHDVEF+V
Sbjct: 361 CAIDPAAGLGSYVEALVRKHDVEFNV 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548039|ref|XP_003542411.1| PREDICTED: uncharacterized protein LOC100780477 [Glycine max]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/401 (79%), Positives = 360/401 (89%), Gaps = 3/401 (0%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTR++ DFG+TMQKDAVP VSADV+FAS RFPNYKIG NNQ+++ KDDPKVLSMKEVVAR
Sbjct: 1   MTRMTHDFGDTMQKDAVPVVSADVIFASLRFPNYKIGVNNQIMETKDDPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQLL+QQKR+SVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDAL+SL+
Sbjct: 61  ETAQLLDQQKRMSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALQSLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDV EAIAMVEALAVQLTQREGELIQEK+EVKKL +FLK+ASEDAKKLV+EE
Sbjct: 121 GRVAGRNKDDVAEAIAMVEALAVQLTQREGELIQEKSEVKKLTNFLKQASEDAKKLVNEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFAR EIE+ARAAVQRVEE+LQEHE+MS+ASGKQD E+LMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RAFARFEIENARAAVQRVEEALQEHERMSQASGKQDLEQLMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHELRALR QLAEKS+  L L+KELA +K+ EE     YEL+G+E LGSYL+I+PCS+
Sbjct: 241 DMEHELRALRAQLAEKSRLYLRLQKELARTKKGEENAPHLYELEGTETLGSYLQIQPCSD 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           NGPELS+CSIQWYRV SEG K+ELISGATKSVYAPEPFDVGR+LQ +I   GQQITL+TT
Sbjct: 301 NGPELSECSIQWYRVSSEGAKKELISGATKSVYAPEPFDVGRVLQVDIISEGQQITLSTT 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHV---RAPPQHPPPQHH 398
           G +DPA GLG+YVEALVRKHD EF+V   +    HP    H
Sbjct: 361 GPIDPAAGLGTYVEALVRKHDTEFNVVVTQTVSDHPNESIH 401

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825901|ref|XP_002880833.1| hypothetical protein ARALYDRAFT_481549 [Arabidopsis lyrata subsp. lyrata] gi|297326672|gb|EFH57092.1| hypothetical protein ARALYDRAFT_481549 [Arabidopsis lyrata subsp. lyrata]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/386 (81%), Positives = 357/386 (92%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRV+RDF +++Q+D VPAVSADV FASSRFPNY+IGAN+Q+ D KDDPKV+SMKEVVAR
Sbjct: 1   MTRVTRDFRDSLQRDGVPAVSADVKFASSRFPNYRIGANDQIFDVKDDPKVMSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQL++QQKRLSVRDLANKFEKGLAAAAKLSEEAKL+EA SLEKHVLLKKLRDALESLR
Sbjct: 61  ETAQLMDQQKRLSVRDLANKFEKGLAAAAKLSEEAKLKEATSLEKHVLLKKLRDALESLR 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIAMVEALAVQLTQREGEL  EKAEVKKLA FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELFIEKAEVKKLASFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFARAEIESARAAVQRVEE+L+EHEQMSRASGKQD E+LMKEVQEARRIKMLHQPS+VM
Sbjct: 181 RAFARAEIESARAAVQRVEEALREHEQMSRASGKQDMEDLMKEVQEARRIKMLHQPSRVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DME+ELRALR QLAEKSK  L L+K+LAM ++ EE +S  YE+DG+EALGS LR++PCSN
Sbjct: 241 DMEYELRALRNQLAEKSKHFLQLQKKLAMCRKSEENISLIYEIDGTEALGSCLRVRPCSN 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           + P+LSKC+IQWYR  S+G KRELISGATKSVYAPEPFDVGR+L A+ITY+G+ ++L+T 
Sbjct: 301 DAPDLSKCTIQWYRSSSDGSKRELISGATKSVYAPEPFDVGRVLHADITYDGRLLSLSTV 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHV 386
           G +DPA GLGSYVEALVRKHDV+F+V
Sbjct: 361 GKIDPAAGLGSYVEALVRKHDVDFNV 386

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554191|ref|XP_003545432.1| PREDICTED: uncharacterized protein LOC100800672 [Glycine max]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/386 (81%), Positives = 355/386 (91%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTR++RDFG+TMQ+DAVPAVS+DVVFASSRFPNY+IGANNQ+++ KDDPKVLSMKEVVAR
Sbjct: 1   MTRLTRDFGDTMQRDAVPAVSSDVVFASSRFPNYRIGANNQIIETKDDPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQLLEQ  RLSVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETAQLLEQHNRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIA+VEALAVQLTQREGELIQEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEEAIAIVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFARAEIE ARAAVQRVEE+LQEHE+MS+ASGKQD E+LM+EVQEARRIKMLHQPSKVM
Sbjct: 181 RAFARAEIEDARAAVQRVEEALQEHERMSQASGKQDLEQLMREVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHELRALR QLAEK++  L L+KEL  +K+  E +   YEL+G+E LGSYL+I+PCS+
Sbjct: 241 DMEHELRALRSQLAEKTRQYLRLQKELTRTKKGGENVPHLYELEGNETLGSYLQIQPCSD 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N PE+SKCSIQWYRV S+G K+ELISGATKSVYAPEPFDVGRILQ +I    + +TL+T 
Sbjct: 301 NAPEVSKCSIQWYRVSSDGAKKELISGATKSVYAPEPFDVGRILQVDIISESEHVTLSTA 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHV 386
           G +DPA GLG+YVEALVRKHD EF+V
Sbjct: 361 GPIDPAAGLGTYVEALVRKHDTEFNV 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083935|emb|CBI24323.3| unnamed protein product [Vitis vinifera]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 320/388 (82%), Positives = 355/388 (91%), Gaps = 2/388 (0%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRVSRDF NTMQK+AVPAVSADV F SSRFPNYK+G  NQ+++ K+DPKVLSMKEVVAR
Sbjct: 34  MTRVSRDFSNTMQKEAVPAVSADVTFTSSRFPNYKLGPYNQIMEAKEDPKVLSMKEVVAR 93

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLS+EA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 94  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSDEARLREAASLEKHVLLKKLRDALESLK 153

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVE+AIAMVEALAVQLTQREGELIQEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 154 GRVAGRNKDDVEDAIAMVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEE 213

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           R+FARAEIE+AR AV+RVEE+L+E E+++RASGKQD +ELMKEVQEARRIKMLHQPSKVM
Sbjct: 214 RSFARAEIENAREAVRRVEEALEEQERIARASGKQDMDELMKEVQEARRIKMLHQPSKVM 273

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSK--RIEEKLSDSYELDGSEALGSYLRIKPC 298
           DMEHEL ALR+QLAEKSK SL L+KEL +SK  R EE +SD YELDG EALGS+L+I+ C
Sbjct: 274 DMEHELLALRLQLAEKSKHSLQLQKELLISKSRRGEENMSDMYELDGPEALGSFLQIQAC 333

Query: 299 SNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLT 358
           S+  P+LS CSIQWYRV SEGGKRELISGA KSVYAPEPFDVGR+LQA+I  +G QITL 
Sbjct: 334 SDKAPDLSHCSIQWYRVSSEGGKRELISGAIKSVYAPEPFDVGRVLQADIVLDGYQITLA 393

Query: 359 TTGAVDPAPGLGSYVEALVRKHDVEFHV 386
           T G +DPA GLGSYVEALVRKHD EF+V
Sbjct: 394 TAGPIDPAAGLGSYVEALVRKHDTEFNV 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225786|ref|NP_180245.1| plectin-related protein [Arabidopsis thaliana] gi|30683247|ref|NP_850085.1| plectin-related protein [Arabidopsis thaliana] gi|2760844|gb|AAB95312.1| hypothetical protein [Arabidopsis thaliana] gi|22531022|gb|AAM97015.1| unknown protein [Arabidopsis thaliana] gi|23197970|gb|AAN15512.1| unknown protein [Arabidopsis thaliana] gi|26452697|dbj|BAC43431.1| unknown protein [Arabidopsis thaliana] gi|330252790|gb|AEC07884.1| plectin-related protein [Arabidopsis thaliana] gi|330252791|gb|AEC07885.1| plectin-related protein [Arabidopsis thaliana]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 313/386 (81%), Positives = 355/386 (91%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRV+RDF +++Q+D VPAVSADV FASSRFPNY+IGAN+Q+ D KDDPKV+SMKEVVAR
Sbjct: 1   MTRVTRDFRDSLQRDGVPAVSADVKFASSRFPNYRIGANDQIFDVKDDPKVMSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQL++QQKRLSVRDLA+KFEKGLAAAAKLSEEAKL+EA SLEKHVLLKKLRDALESLR
Sbjct: 61  ETAQLMDQQKRLSVRDLAHKFEKGLAAAAKLSEEAKLKEATSLEKHVLLKKLRDALESLR 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVEEAIAMVEALAVQLTQREGEL  EKAEVKKLA FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELFIEKAEVKKLASFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFARAEIESARAAVQRVEE+L+EHEQMSRASGKQD E+LMKEVQEARRIKMLHQPS+VM
Sbjct: 181 RAFARAEIESARAAVQRVEEALREHEQMSRASGKQDMEDLMKEVQEARRIKMLHQPSRVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DME+ELRALR QLAEKSK  L L+K+LAM ++ EE +S  YE+DG+EALGS LR++PCSN
Sbjct: 241 DMEYELRALRNQLAEKSKHFLQLQKKLAMCRKSEENISLVYEIDGTEALGSCLRVRPCSN 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           + P+LSKC+IQWYR  S+G K+ELISGATKSVYAPEPFDVGR+L A+I Y+G  ++L+T 
Sbjct: 301 DAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIYDGHSLSLSTV 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHV 386
           G +DPA GLGSYVEALVRKHDV+F+V
Sbjct: 361 GKIDPAAGLGSYVEALVRKHDVDFNV 386

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435953|ref|XP_002269709.1| PREDICTED: uncharacterized protein LOC100242766 [Vitis vinifera]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 320/388 (82%), Positives = 355/388 (91%), Gaps = 2/388 (0%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTRVSRDF NTMQK+AVPAVSADV F SSRFPNYK+G  NQ+++ K+DPKVLSMKEVVAR
Sbjct: 1   MTRVSRDFSNTMQKEAVPAVSADVTFTSSRFPNYKLGPYNQIMEAKEDPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLS+EA+LREAASLEKHVLLKKLRDALESL+
Sbjct: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSDEARLREAASLEKHVLLKKLRDALESLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDVE+AIAMVEALAVQLTQREGELIQEKAEVKKLA+FLK+ASEDAKKLVDEE
Sbjct: 121 GRVAGRNKDDVEDAIAMVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           R+FARAEIE+AR AV+RVEE+L+E E+++RASGKQD +ELMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RSFARAEIENAREAVRRVEEALEEQERIARASGKQDMDELMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSK--RIEEKLSDSYELDGSEALGSYLRIKPC 298
           DMEHEL ALR+QLAEKSK SL L+KEL +SK  R EE +SD YELDG EALGS+L+I+ C
Sbjct: 241 DMEHELLALRLQLAEKSKHSLQLQKELLISKSRRGEENMSDMYELDGPEALGSFLQIQAC 300

Query: 299 SNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLT 358
           S+  P+LS CSIQWYRV SEGGKRELISGA KSVYAPEPFDVGR+LQA+I  +G QITL 
Sbjct: 301 SDKAPDLSHCSIQWYRVSSEGGKRELISGAIKSVYAPEPFDVGRVLQADIVLDGYQITLA 360

Query: 359 TTGAVDPAPGLGSYVEALVRKHDVEFHV 386
           T G +DPA GLGSYVEALVRKHD EF+V
Sbjct: 361 TAGPIDPAAGLGSYVEALVRKHDTEFNV 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574113|ref|XP_003555196.1| PREDICTED: uncharacterized protein LOC100798334 [Glycine max]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 316/401 (78%), Positives = 357/401 (89%), Gaps = 3/401 (0%)

Query: 1   MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
           MTR++RDFG+TMQKDAVPAVSAD++FAS RFPNYKIG NNQ+++ KD PKVLSMKEVVAR
Sbjct: 1   MTRMTRDFGDTMQKDAVPAVSADIIFASLRFPNYKIGVNNQIMETKDSPKVLSMKEVVAR 60

Query: 61  ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
           ETAQLL+QQKRLSVRDLA+KFEKGLAAAAKLSEEA+LREAASLEKHVLLKKLRDAL+SL+
Sbjct: 61  ETAQLLDQQKRLSVRDLASKFEKGLAAAAKLSEEARLREAASLEKHVLLKKLRDALQSLK 120

Query: 121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
           GRVAGRNKDDV EAIAMVEALAVQLTQREGELIQEK+EVKKL +FLK+ASEDAKKLV+EE
Sbjct: 121 GRVAGRNKDDVAEAIAMVEALAVQLTQREGELIQEKSEVKKLTNFLKQASEDAKKLVNEE 180

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
           RAFAR EIE+ARAAVQRVEE+LQEHE+MS+ASGKQD E+LMKEVQEARRIKMLHQPSKVM
Sbjct: 181 RAFARFEIENARAAVQRVEEALQEHERMSQASGKQDLEQLMKEVQEARRIKMLHQPSKVM 240

Query: 241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
           DMEHELRALR QLAEKS+  L L+KELA +K+ EE     YEL+G+E LGSYL+I+PCS+
Sbjct: 241 DMEHELRALRAQLAEKSRLYLRLQKELARAKKGEENAPHLYELEGTEMLGSYLQIQPCSD 300

Query: 301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
           N PELS+CSIQWYRV +EG  +ELISGA KSVYAPEPFDVGR+LQ +I   G QITL+TT
Sbjct: 301 NVPELSECSIQWYRVSTEGANKELISGANKSVYAPEPFDVGRVLQVDIILEGHQITLSTT 360

Query: 361 GAVDPAPGLGSYVEALVRKHDVEFHV---RAPPQHPPPQHH 398
           G +DPA GLG+YVEALVRKHD EF+V   +    HP    H
Sbjct: 361 GPIDPAAGLGTYVEALVRKHDTEFNVVVTQTGSDHPNESIH 401

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2043828	496	SCAB1 "stomatal closure-relate	0.953	0.778	0.753	6.2e-149
TAIR|locus:2102534	490	AT3G56480 "AT3G56480" [Arabido	0.950	0.785	0.543	1.9e-99
TAIR|locus:2058455	492	AT2G40820 "AT2G40820" [Arabido	0.953	0.784	0.529	1.7e-98
UNIPROTKB|Q15149	4684	PLEC "Plectin" [Homo sapiens (	0.444	0.038	0.271	7.4e-06
UNIPROTKB|F1PHS5	4691	PLEC "Uncharacterized protein"	0.422	0.036	0.265	7.4e-06
UNIPROTKB|O01395	275	mst101(3) "Axoneme-associated	0.404	0.596	0.289	4.5e-05
RGD|628597	1212	Filip1 "filamin A interacting	0.456	0.152	0.271	7.4e-05
UNIPROTKB|F1PJ01	1972	MYH11 "Uncharacterized protein	0.469	0.096	0.262	7.8e-05
UNIPROTKB|Q8EH53	592	SO_1377 "Putative negative reg	0.604	0.413	0.244	8.2e-05
TIGR_CMR|SO_1377	592	SO_1377 "conserved hypothetica	0.604	0.413	0.244	8.2e-05

TAIR|locus:2043828 SCAB1 "stomatal closure-related actin binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1454 (516.9 bits), Expect = 6.2e-149, P = 6.2e-149
 Identities = 291/386 (75%), Positives = 332/386 (86%)

Query:     1 MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVAR 60
             MTRV+RDF +++Q+D VPAVSADV FASSRFPNY+IGAN+Q+ D KDDPKV+SMKEVVAR
Sbjct:     1 MTRVTRDFRDSLQRDGVPAVSADVKFASSRFPNYRIGANDQIFDVKDDPKVMSMKEVVAR 60

Query:    61 ETAQLLEQQKRLSVRDLANKFXXXXXXXXXXXXXXXXXXXXXXXXHVLLKKLRDALESLR 120
             ETAQL++QQKRLSVRDLA+KF                        HVLLKKLRDALESLR
Sbjct:    61 ETAQLMDQQKRLSVRDLAHKFEKGLAAAAKLSEEAKLKEATSLEKHVLLKKLRDALESLR 120

Query:   121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
             GRVAGRNKDDVEEAIAMVEALAVQLTQREGEL  EKAEVKKLA FLK+ASEDAKKLVDEE
Sbjct:   121 GRVAGRNKDDVEEAIAMVEALAVQLTQREGELFIEKAEVKKLASFLKQASEDAKKLVDEE 180

Query:   181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
             RAFARAEIESARAAVQRVEE+L+EHEQMSRASGKQD E+LMKEVQEARRIKMLHQPS+VM
Sbjct:   181 RAFARAEIESARAAVQRVEEALREHEQMSRASGKQDMEDLMKEVQEARRIKMLHQPSRVM 240

Query:   241 DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKPCSN 300
             DME+ELRALR QLAEKSK  L L+K+LAM ++ EE +S  YE+DG+EALGS LR++PCSN
Sbjct:   241 DMEYELRALRNQLAEKSKHFLQLQKKLAMCRKSEENISLVYEIDGTEALGSCLRVRPCSN 300

Query:   301 NGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTT 360
             + P+LSKC+IQWYR  S+G K+ELISGATKSVYAPEPFDVGR+L A+I Y+G  ++L+T 
Sbjct:   301 DAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIYDGHSLSLSTV 360

Query:   361 GAVDPAPGLGSYVEALVRKHDVEFHV 386
             G +DPA GLGSYVEALVRKHDV+F+V
Sbjct:   361 GKIDPAAGLGSYVEALVRKHDVDFNV 386

GO:0005634 "nucleus" evidence=ISM

GO:0003779 "actin binding" evidence=IDA

GO:0007015 "actin filament organization" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2102534 AT3G56480 "AT3G56480" [Arabidopsis thaliana (taxid:3702)]

 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 212/390 (54%), Positives = 272/390 (69%)

Query:     1 MTRVSRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDG-KDDPKVLSMKEVVA 59
             MT+V  +   T+    VP VS DV FAS  FP YK+G +NQ+V+  K+D K  S+KE V 
Sbjct:     1 MTKVCPEIEGTLSLSVVP-VSVDVSFASDHFPTYKLGPDNQIVEEPKEDEKGPSVKETVE 59

Query:    60 RETAQLLEQQKRLSVRDLANKFXXXXXXXXXXXXXXXXXXXXXXXXHVLLKKLRDALESL 119
             +E+  L +Q KRLSVRDLA+KF                        HV+LKKLRDALE +
Sbjct:    60 KESELLSDQHKRLSVRDLASKFDKNLAAAVSLANEAKLREVASLEGHVMLKKLRDALEYM 119

Query:   120 RGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDE 179
             RGR  G+NK DVE AI+MVEALAV+LTQ EGELIQEK EVKKL +FLK+ SEDAKKLV++
Sbjct:   120 RGRTDGQNKQDVETAISMVEALAVKLTQNEGELIQEKFEVKKLGNFLKQTSEDAKKLVNQ 179

Query:   180 ERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQ--DFEELMKEVQEARRIKMLHQPS 237
             E++F+ AEIE+ARA V R+ E+ +E E++S AS  Q  D E+L++EVQEAR+IK +H P+
Sbjct:   180 EKSFSCAEIETARAVVLRLGEAFEEQERISEASRAQGPDVEKLVEEVQEARQIKRMHHPT 239

Query:   238 KVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRIKP 297
             KVM M+HEL  LR ++ EK   S+ L KE+A+ KR+EE  S  + L+G ++LGS LRI+ 
Sbjct:   240 KVMGMQHELHGLRNRIQEKYMNSVKLHKEIAIIKRVEESKSCPFVLEGKQSLGSCLRIRV 299

Query:   298 -CSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQIT 356
                +N P+LS CSIQWYR   E  +RE ISGA +S+YAPEPFDVGRILQA+I  NGQ+ T
Sbjct:   300 NAQDNAPDLSNCSIQWYRAACETSRREAISGAIQSMYAPEPFDVGRILQADILSNGQKFT 359

Query:   357 LTTTGAVDPAPGLGSYVEALVRKHDVEFHV 386
             +TT   VDP  GL S VE+L+RK + EF V
Sbjct:   360 VTTDDPVDPDSGLPSRVESLMRKSNSEFSV 389

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2058455 AT2G40820 "AT2G40820" [Arabidopsis thaliana (taxid:3702)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 207/391 (52%), Positives = 279/391 (71%)

Query:     1 MTRV--SRDFGNTMQKDAVPAVSADVVFASSRFPNYKIGANNQVVDGKD-DPKVLSMKEV 57
             MT+V    +    + +  V  +SADV FAS+ FP YK+G ++Q+VD  D D KV S+K+V
Sbjct:     1 MTKVCPKTEEKRVVSEAVVEPISADVSFASNHFPTYKLGPDDQIVDEPDEDDKVPSVKDV 60

Query:    58 VARETAQLLEQQKRLSVRDLANKFXXXXXXXXXXXXXXXXXXXXXXXXHVLLKKLRDALE 117
             V +ET  L +Q K+LSVRDLA KF                        HV+LKKLRDALE
Sbjct:    61 VGKETGDLSDQHKKLSVRDLACKFDKNLAAASKLVDEAKLNDVTSLEGHVMLKKLRDALE 120

Query:   118 SLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLV 177
             ++RGR+ GRN++ VE+AI+MVEALAV+LTQ EGELI +K EVKKLA FLKKAS+DAKKLV
Sbjct:   121 TMRGRMDGRNREAVEKAISMVEALAVKLTQNEGELIHDKFEVKKLASFLKKASDDAKKLV 180

Query:   178 DEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQ--DFEELMKEVQEARRIKMLHQ 235
             ++E++FA AEIESARA V ++  + +E E  S+AS  Q  + E+L++EVQEARRI+ LH+
Sbjct:   181 NQEKSFACAEIESARALVMKLGGAFEEQELCSKASRDQGPNVEKLVEEVQEARRIRRLHK 240

Query:   236 PSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDGSEALGSYLRI 295
             P+ V+ M+HELR L+ Q+ EKS  S+ L++E+A+ K+ E   S  Y LDG+++LGS LRI
Sbjct:   241 PTMVIGMQHELRDLKSQIQEKSAYSVKLQREIAIIKKAEGSKSCPYVLDGAQSLGSCLRI 300

Query:   296 KPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITYNGQQI 355
             +  S++G ++SKCSI WYR  SE  +RE ISGA +SVYAPEPFDVGR++QA+I  NGQ+ 
Sbjct:   301 RASSDSGIDISKCSIHWYRAASESSRREAISGANRSVYAPEPFDVGRVIQADIVSNGQKF 360

Query:   356 TLTTTGAVDPAPGLGSYVEALVRKHDVEFHV 386
             T+TT G ++ A GL S VE+L+RK + EF V
Sbjct:   361 TVTTDGPINTAAGLQSRVESLLRKSNSEFTV 391

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q15149 PLEC "Plectin" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 51/188 (27%), Positives = 93/188 (49%)

Query:   109 LKKLRDA-LESLRGRVAG--RNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADF 165
             L+K  D+ LE  +G V    R +  VEE I  ++A   +    + EL  E   ++  A+ 
Sbjct:  2035 LRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAED 2094

Query:   166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRA--SGKQDFEELMKE 223
               ++ E A+     +R  A  E    R A +RV++SL   E+ +R   +  ++ E L  +
Sbjct:  2095 TLRSKEQAELEAARQRQLAAEEERRRREAEERVQKSLAAEEEAARQRKAALEEVERLKAK 2154

Query:   224 VQEARRIK-MLHQPS-KVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSY 281
             V+EARR++    Q S + + +  E    R+Q  EK+    + +KE  + + ++++ S   
Sbjct:  2155 VEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQSVLD 2214

Query:   282 ELDG-SEA 288
             +L G +EA
Sbjct:  2215 QLRGEAEA 2222

GO:0003779 "actin binding" evidence=IEA

GO:0042383 "sarcolemma" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030056 "hemidesmosome" evidence=IDA

GO:0031581 "hemidesmosome assembly" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006921 "cellular component disassembly involved in execution phase of apoptosis" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0030506 "ankyrin binding" evidence=IPI

GO:0016528 "sarcoplasm" evidence=ISS

GO:0043034 "costamere" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

UNIPROTKB|F1PHS5 PLEC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 145 (56.1 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 47/177 (26%), Positives = 86/177 (48%)

Query:   108 LLKKLRDALESLRGRVAG--RNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADF 165
             L K   + LE  +G V    R +  VEE I  ++A   +    + EL  E   ++  A+ 
Sbjct:  2042 LRKASENELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIRSNAED 2101

Query:   166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRA--SGKQDFEELMKE 223
               ++ E A+     +R  A  E +  R A +RV++SL   E+ +R   S  ++ E L  +
Sbjct:  2102 TLRSKEQAELEATRQRQLAAEEEQRRREAEERVQKSLAAEEEAARQRKSALEEVERLKAK 2161

Query:   224 VQEARRIK-MLHQPS-KVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLS 278
             V+EARR++    Q S + + +  E    R+Q  EK+    + +KE  + + ++++ S
Sbjct:  2162 VEEARRLRERAEQESARQLQLAQEAAQKRLQAEEKAHAFAVQQKEQELQQTLQQEQS 2218

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0031581 "hemidesmosome assembly" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0030056 "hemidesmosome" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|O01395 mst101(3) "Axoneme-associated protein mst101(3)" [Drosophila hydei (taxid:7224)]

 Score = 123 (48.4 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 51/176 (28%), Positives = 83/176 (47%)

Query:   110 KKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQ--LTQRE--GELIQ---EKAEVKKL 162
             KK ++A E  +   A + + +  E     EA   +    Q++   EL +   E AE KK 
Sbjct:    72 KKEKEAAEKKKCAEAAKKEKEAAEKKKCAEAAKKEQEAAQKKKCAELAKKEKEAAEKKKC 131

Query:   163 ADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFE-ELM 221
             A+  KK  E A++   EE AF + + E A A  ++  +   E +Q   A  K++ E E+M
Sbjct:   132 AEAAKKEKEAAERKKCEEAAF-KQKCEEA-AKKKKEAKKAAELQQKCAALAKKEKEAEMM 189

Query:   222 KEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRK--ELAMSKRIEE 275
             K+ +EA + K   + +K    E   +    + A K KC+   +K  E A+ K  EE
Sbjct:   190 KKCEEAAKKKAAEEAAKKKAEEVAAKKKADEAAAKKKCAEAKKKAEEAALKKMCEE 245

GO:0007291 "sperm individualization" evidence=IEP

RGD|628597 Filip1 "filamin A interacting protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 54/199 (27%), Positives = 94/199 (47%)

Query:   108 LLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVK-KLADFL 166
             L +KLR+  E L+  V  ++K+D ++ +     L V    +     QE  E+  KLA+  
Sbjct:   270 LTQKLREEEEKLKA-VTYKSKEDRQKLLK----LEVDFEHKASRFSQEHEEMNAKLANQE 324

Query:   167 KKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQE 226
                 +   KLV   +     E+E    ++Q+ EE LQE  +   A G+     LM EV+ 
Sbjct:   325 SHNRQLRLKLVGLSQRIE--ELEETNKSLQKAEEELQELREKI-AKGECGNSSLMAEVES 381

Query:   227 ARR--IKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELA-MSKRIEE--KLSDSY 281
              R+  ++M  +  ++   E + R L+ +L E+   S  LR E+  + KR+ E  KL +++
Sbjct:   382 LRKRVLEMEGKDEEITKTEAQCRELKKKLQEEEHHSKELRLEVEKLQKRMSELEKLEEAF 441

Query:   282 ELDGSEALGSYLRIKPCSN 300
                 SE    +L ++   N
Sbjct:   442 SRSKSECTQLHLNLEKEKN 460

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|F1PJ01 MYH11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 7.8e-05, P = 7.8e-05
 Identities = 53/202 (26%), Positives = 99/202 (49%)

Query:   112 LRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE 171
             + D  E L    A RNK + ++   + E L    T+ E + +   A  ++L    ++   
Sbjct:  1120 ISDLQEDLDSERAARNKAEKQKR-DLGEELEALKTELE-DTLDSTATQQELRAKREQEVT 1177

Query:   172 DAKKLVDEERAFARAEIESARAA-VQRVEESLQEHEQMSRASGKQDFEE--LMKEVQE-A 227
               KK +DEE     A+++  R    Q VEE  ++ EQ  RA    D  +  L KE  + A
Sbjct:  1178 VLKKALDEETRSHEAQVQEMRQKHTQAVEELTEQLEQFKRAKANLDKNKQTLEKENADLA 1237

Query:   228 RRIKMLHQPSKVMDMEHELRALRIQLAE-KSKCSLLLRKELAMSKRIEEKLSDSYELDG- 285
               +++L+Q  +  ++EH+ + L +QL E +SKCS   R    ++ ++ +  ++   + G 
Sbjct:  1238 GELRVLNQAKQ--EVEHKKKKLEVQLQELQSKCSDGERARAELNDKVHKLQNEVESVTGM 1295

Query:   286 -SEALGSYLRI-KPCSNNGPEL 305
              +EA G  +++ K  ++ G +L
Sbjct:  1296 LNEAEGKAIKLAKDVASLGSQL 1317

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0048251 "elastic fiber assembly" evidence=IEA

GO:0030485 "smooth muscle contractile fiber" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|Q8EH53 SO_1377 "Putative negative regulator of univalent cation permeability" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 126 (49.4 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 63/258 (24%), Positives = 112/258 (43%)

Query:   110 KKLRDALESLRGRVAGRN----KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADF 165
             K+  D  +  R ++  RN    K+ +E   A  EA  +Q    E +   +KAE+ K  + 
Sbjct:   221 KETNDIQQENRIKIEQRNLEAEKESLEIEKAEEEARLIQQQSLEFKRADQKAEIIKQKE- 279

Query:   166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQ 225
               KA E+ +  + +ERA   AEIE  +    R  E  +  EQ SR   ++D E   +E +
Sbjct:   280 -NKAREEREAEIAKERAIETAEIEKTKDIETREIEKHKSIEQ-SRIQQQRDIEVAEQEKR 337

Query:   226 EARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDG 285
              A   K   + S       E   L++   EK +  +  R+    ++R E ++ D+ +   
Sbjct:   338 IAVAAKS-EEESAARARAAEAEKLKV---EKEEAVITARQVAEANRRKEIEVIDARKEAE 393

Query:   286 SEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQ 345
              +A+G  ++ +       + S   +   R  ++  K  L + A + VYA E      + +
Sbjct:   394 RDAVGVTVQAEAEKRAAEDRSSAILIEARASADAKK--LQAEADEKVYAVEAAGKQALYE 451

Query:   346 AEITYNGQQITLTTTGAV 363
             AE     +QI L  + A+
Sbjct:   452 AENVLRDEQIALQKSLAI 469

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1377 SO_1377 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 126 (49.4 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 63/258 (24%), Positives = 112/258 (43%)

Query:   110 KKLRDALESLRGRVAGRN----KDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADF 165
             K+  D  +  R ++  RN    K+ +E   A  EA  +Q    E +   +KAE+ K  + 
Sbjct:   221 KETNDIQQENRIKIEQRNLEAEKESLEIEKAEEEARLIQQQSLEFKRADQKAEIIKQKE- 279

Query:   166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQ 225
               KA E+ +  + +ERA   AEIE  +    R  E  +  EQ SR   ++D E   +E +
Sbjct:   280 -NKAREEREAEIAKERAIETAEIEKTKDIETREIEKHKSIEQ-SRIQQQRDIEVAEQEKR 337

Query:   226 EARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDG 285
              A   K   + S       E   L++   EK +  +  R+    ++R E ++ D+ +   
Sbjct:   338 IAVAAKS-EEESAARARAAEAEKLKV---EKEEAVITARQVAEANRRKEIEVIDARKEAE 393

Query:   286 SEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQ 345
              +A+G  ++ +       + S   +   R  ++  K  L + A + VYA E      + +
Sbjct:   394 RDAVGVTVQAEAEKRAAEDRSSAILIEARASADAKK--LQAEADEKVYAVEAAGKQALYE 451

Query:   346 AEITYNGQQITLTTTGAV 363
             AE     +QI L  + A+
Sbjct:   452 AENVLRDEQIALQKSLAI 469

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
cd11675	85	cd11675, SCAB1_middle, middle domain of the stomat	2e-45
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-07
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	4e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	5e-04
cd13232	119	cd13232, Ig-PH_SCAB1, Stomatal Closure Related Act	6e-04
pfam07227	446	pfam07227, DUF1423, Protein of unknown function (D	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003

>gnl|CDD|212565 cd11675, SCAB1_middle, middle domain of the stomatal closure-related actin binding protein1

 Score =  151 bits (383), Expect = 2e-45
 Identities = 55/84 (65%), Positives = 68/84 (80%)

Query: 281 YELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDV 340
           YELDG E LGS LRI P  ++ P+LSKCSIQW+R+ S+G K+ELISGATK  YAPEPFDV
Sbjct: 2   YELDGEERLGSCLRIVPRDDDSPDLSKCSIQWHRIASDGSKKELISGATKPQYAPEPFDV 61

Query: 341 GRILQAEITYNGQQITLTTTGAVD 364
           GR+LQA+I   GQ+ +L+TTG +D
Sbjct: 62  GRLLQADIVLPGQKESLSTTGPID 85

SCAB1 is a dimeric actin crosslinker conserved in plants. The three-dimensional structure of this domain resembles that of fibronectin type III repeat units and immunoglobulins. It is situated between a coiled-coil dimerization domain and a C-terminal pleckstrin homology-like module. SCAB1 appears to be required for normal actin dynamics in guard cells stomatal movement. The function of the middle domain is not clear. Length = 85

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 51.7 bits (123), Expect = 6e-07
 Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 12/194 (6%)

Query: 83   KGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALA 142
            K  AAA K ++EAK +     +     KK  +A      + A   K   EEA    EA  
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA------KKADEAKKKAEEAKKAEEAKK 1464

Query: 143  VQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESL 202
                 ++ +  ++KAE  K AD  KK +E+AKK  DE +   +A     +A   +  E  
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAK---KAAEAKKKADEAKKAEEA 1521

Query: 203  QEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLL 262
            ++ ++  +A   +  +E  K+ +E ++   L +  ++   E + +A   + AE+ K   L
Sbjct: 1522 KKADEAKKAEEAKKADEA-KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580

Query: 263  LRKELAMSKRIEEK 276
             + E A  K+ EE 
Sbjct: 1581 RKAEEA--KKAEEA 1592

Length = 2084

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 34/208 (16%), Positives = 84/208 (40%), Gaps = 18/208 (8%)

Query: 12  MQKDAV--PAVSADVVFASSRFPNYKIGANNQVVDGKDDPKVLSMKEVVARETAQLLEQQ 69
           + ++ +   A    V    S F +         +    +  + S KE + + + +L E +
Sbjct: 124 LLEELLKETASDPVVQELVSIFNDLIDSIKEDNLKDDLESLIASAKEELDQLSKKLAELK 183

Query: 70  KRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHV--LLKKLRDALESLRGRVAGRN 127
                 +L    ++      +L  + +    A LE     L K+LR   E  +  +  + 
Sbjct: 184 AEEE-EELERALKE---KREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKY 239

Query: 128 KDDVEEAIAMVEALAVQLTQR-EGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARA 186
           ++ + + +   E  A    Q+ + EL  +  E+++      + +++ K+ V+EER    A
Sbjct: 240 EEKLRQEL---ERQAEAHEQKLKNELALQAIELQR------EFNKEIKEKVEEERNGRLA 290

Query: 187 EIESARAAVQRVEESLQEHEQMSRASGK 214
           ++    + ++ +E++L    +    + K
Sbjct: 291 KLAELNSRLKGLEKALDSRSEAEDENHK 318

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 15/230 (6%)

Query: 56  EVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDA 115
           E +  E  +L E+ + L  R L    E+  +    L++  +  E    ++  L ++L + 
Sbjct: 740 EELEEELEELEEELEELQER-LEELEEELESLEEALAKLKEEIEELEEKRQALQEELEEL 798

Query: 116 LESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKK 175
            E L    A R  D +E  +  +E    +L Q   EL +E  E+++  D L++  E+ +K
Sbjct: 799 EEELEE--AERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856

Query: 176 LVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQ 235
            ++E     + E+E   A  + +E+ L+E E+  +   +++  EL  E+ E +  ++   
Sbjct: 857 ELEE----LKEELEELEAEKEELEDELKELEEE-KEELEEELRELESELAELKE-EIEKL 910

Query: 236 PSKVMDMEHELRALRIQLAE-----KSKCSLLLRKEL-AMSKRIEEKLSD 279
             ++ ++E +L  L ++L E     + +    L  EL    +R+EE++  
Sbjct: 911 RERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEA 960

Length = 1163

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 125 GRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAK----KLVDEE 180
           G +K+ + E IA +E L  +L Q+  E      E +KL + L++  E  +    KL++E 
Sbjct: 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571

Query: 181 RAFARAEIESARAAVQRVEESLQEHEQMSRASGK-QDFEELMKEVQEARRIKMLHQPSKV 239
              A+  I+ A+     + + L++ ++   AS K  +  E  K + +A   K   +  + 
Sbjct: 572 EKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQK 631

Length = 782

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 48/242 (19%), Positives = 96/242 (39%), Gaps = 17/242 (7%)

Query: 59  ARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALES 118
           A + A+L  Q+ +   + L +K E  +A   + +E   LR+  + +   LL++ +  LE+
Sbjct: 650 ALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQ-LRQLDA-QLKQLLEQQQAFLEA 707

Query: 119 LRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKA--SEDAKKL 176
           L+        + + +   +   L  QL Q    +   + + K     LKK    E A   
Sbjct: 708 LKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLD 767

Query: 177 VDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQP 236
           VD         ++  +  ++ +E +++      R    +++   M+E    R      +P
Sbjct: 768 VDPNT------VKELKRQIEELETTIERIAV--RRPEVREYRAFMQETWLHRDSLREERP 819

Query: 237 ---SKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSD--SYELDGSEALGS 291
               ++ ++E     L+ +L    K + L RK+L   ++  EK  D     L G      
Sbjct: 820 NLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMR 879

Query: 292 YL 293
            L
Sbjct: 880 QL 881

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|241386 cd13232, Ig-PH_SCAB1, Stomatal Closure Related Actin-Binding Protein 1 Pleckstrin homology-like domain

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 366 APGLGSYVEALVRKHDVEFHVR 387
           A GLG+YVEAL++K   EF+V 
Sbjct: 1   AAGLGNYVEALLKKGGPEFNVV 22

SCAB1 is an actin-binding protein that interacts with actin filaments and regulates stomatal movement. SCAB1 is composed of an actin-binding domain, two coiled-coil (CC) domains, and a fused immunoglobulin (Ig) and PH (Ig-PH) domain. SCAB1 homologs are widely present, often in multiple copies (three in Arabidopsis), in plants including eudicots, monocots, ferns and mosses, but are not found in algae and non-plant species. The C-terminal PH domain binds weakly with inositol phosphates via an atypical basic surface patch. SCAB1 forms a dimeric structure via its coiled-coil domains. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 119

>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423)

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 21/142 (14%)

Query: 87  AAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAG-------------RNKDDVEE 133
            A  + E  +  E+ + EK  +LKK R AL++    +               R K  ++E
Sbjct: 295 IAEVVQEAVRKMESVAEEKMRMLKKARSALDACDRELEEKAREVSELKMERQRKKPQIDE 354

Query: 134 AIAMVEALAVQLTQREGELIQEKA-EVKKLADFLKKASEDAKKLVDEERA--FARAEIES 190
               +E++ V+L Q E ++ Q KA E ++ A+ L++ +    +  +EE A  + +  +  
Sbjct: 355 ----LESI-VRLKQAEADMFQLKADEARREAERLQRIALAKTEKSEEEYASKYLKLRLSE 409

Query: 191 ARAAVQRVEESLQEHEQMSRAS 212
           A    Q + E L+  E+  R S
Sbjct: 410 AEEERQYLFEELKLQEESHRDS 431

This family represents a conserved region approximately 500 residues long within a number of Arabidopsis thaliana proteins of unknown function. Length = 446

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 23/216 (10%)

Query: 61   ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
            E A+  E+ +   V  L  + +K  A  AK +EEAK++ A  L+K           E  +
Sbjct: 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK-AEELKKA----------EEEK 1632

Query: 121  GRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEE 180
             +V    K + EE     +  A +L + E E   + AE  K A+  KK +E+AKK  ++E
Sbjct: 1633 KKVEQLKKKEAEE-----KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687

Query: 181  RAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVM 240
            +  A A  + A  A +  E   +E E+  +A      EEL K  +E  +IK      +  
Sbjct: 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKA------EELKKA-EEENKIKAEEAKKEAE 1740

Query: 241  DMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEK 276
            + + +    +    EK K + L ++E   ++ I ++
Sbjct: 1741 EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 47/218 (21%), Positives = 99/218 (45%), Gaps = 22/218 (10%)

Query: 60   RETAQLLEQQKRLSVRDLANKFEKGLAA--AAKLSEEAKLREAASLEKHVLLKKLRDALE 117
            ++  +  + +++    +   K E+   A  A K +EEAK ++A + +K     K      
Sbjct: 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KKADAAKKKAEEAKKAAEAA 1348

Query: 118  SLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLV 177
                  A    +  EE  A       +  +++ +  ++KAE KK AD  KK +E+ KK  
Sbjct: 1349 KAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407

Query: 178  DEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPS 237
            DE        ++ A AA ++ +E+ ++ E+  +A      +E  K+ +EA++     + +
Sbjct: 1408 DE--------LKKAAAAKKKADEAKKKAEEKKKA------DEAKKKAEEAKKADEAKKKA 1453

Query: 238  KVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEE 275
            +      E +    + AE++K +   +K+   +K+ +E
Sbjct: 1454 EEAKKAEEAK----KKAEEAKKADEAKKKAEEAKKADE 1487

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 19/232 (8%)

Query: 70  KRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKD 129
           +   + +   + +K L A A      + ++    E+   L++  + LE+    +  +  +
Sbjct: 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334

Query: 130 DVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFA----- 184
             EE   + E L     + E    + +    +L +   +  E  ++L       A     
Sbjct: 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394

Query: 185 ----RAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQE--ARRIKMLHQ-PS 237
                 EIE   A ++R+E+  +  +Q      K+  E  +KE+Q       + L +   
Sbjct: 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454

Query: 238 KVMDMEHELRALRIQLAEKSKCSLLLRKELA-------MSKRIEEKLSDSYE 282
           ++  +E  L  LR +L E  +      +ELA         +R++E L    E
Sbjct: 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 18/187 (9%)

Query: 110 KKLRDALESLRGRVAGRNKDDVEEAIAMVEA----LAVQLTQREGELIQEKAEVKKLADF 165
           + L        G    + K+ +E     +E     L  +L +   E+ + +  ++++   
Sbjct: 214 QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273

Query: 166 LKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHE-QMSRASGKQ--------- 215
           L++ ++  K L +EE+   + +I    A +  +E S+ E E ++  A  +          
Sbjct: 274 LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK 333

Query: 216 ---DFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKR 272
              + EEL +E++E R+ +      +  +++ EL  LR +L E  K     R EL   + 
Sbjct: 334 LLAEIEELEREIEEERKRRDKLT-EEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392

Query: 273 IEEKLSD 279
             EKL  
Sbjct: 393 KLEKLKR 399

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 46/234 (19%), Positives = 98/234 (41%), Gaps = 19/234 (8%)

Query: 55  KEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRD 114
           K  +     +L E Q+ L   +L  + E+     + L E  +  E    E    L++L++
Sbjct: 273 KSELEELREELEELQEEL--LELKEEIEELEGEISLLRERLEELENELEELEERLEELKE 330

Query: 115 ALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAK 174
            +E+L+  +  R     E     +E L  +L + + EL ++ + + +  + L +A  +  
Sbjct: 331 KIEALKEELEERETLLEE-----LEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385

Query: 175 KLVDEERAFARAEIESARAAVQRVEESLQEHEQM------SRASGKQDFEELMKEVQEAR 228
             ++ E A  R E+E  +  ++ +EE L+   +            + + EEL  E++E  
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELN 445

Query: 229 -RIKMLHQP-----SKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEK 276
             ++ L +       ++ ++E EL  L+ +L    K    L   L   +  +  
Sbjct: 446 EELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
PRK00409	782	recombination and DNA strand exchange inhibitor pr	91.12
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.11
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	84.68
PRK04863	1486	mukB cell division protein MukB; Provisional	84.36
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	83.61
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	83.52
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	83.23
PRK09039	343	hypothetical protein; Validated	82.37
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	82.0
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	81.42
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	80.51

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=91.12  E-value=3.1  Score=45.71  Aligned_cols=81  Identities=27%  Similarity=0.382  Sum_probs=62.2

Q ss_pred             CCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015554          125 GRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASED----AKKLVDEERAFARAEIESARAAVQRVEE  200 (405)
Q Consensus       125 GrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeD----AkkiV~eERa~A~aEIE~ArAaV~Rve~  200 (405)
                      |....++++.|.=.+..-.++-++..++.+.+.|++++-+-++..-+.    -+++.++.+..|+..|+.||..+..+-.
T Consensus       512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~  591 (782)
T PRK00409        512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIK  591 (782)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456668888888888888888888888888888888877777665443    5567788888888888888887777777


Q ss_pred             HHHHH
Q 015554          201 SLQEH  205 (405)
Q Consensus       201 al~Eq  205 (405)
                      -|++.
T Consensus       592 ~lk~~  596 (782)
T PRK00409        592 ELRQL  596 (782)
T ss_pred             HHHHh
Confidence            77654

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=86.11  E-value=37  Score=33.46  Aligned_cols=102  Identities=23%  Similarity=0.391  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015554          130 DVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMS  209 (405)
Q Consensus       130 dveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eqe~~s  209 (405)
                      .+.+.+..+.-+--++..+-.+|..+-...+.++.-+....-+-=.-..++=+...++|+.=|.-+..++.-+++-+...
T Consensus       167 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i  246 (325)
T PF08317_consen  167 KLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI  246 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666665555555555444444443322222211112222233333344444444444444444433332


Q ss_pred             hhcCcccHHHHHHHHHHHHhhhh
Q 015554          210 RASGKQDFEELMKEVQEARRIKM  232 (405)
Q Consensus       210 ~~s~kqd~e~L~~EVqEARRIKm  232 (405)
                       ...+....++..+|++|.|+..
T Consensus       247 -~~~~~~k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  247 -EELEEQKQELLAEIAEAEKIRE  268 (325)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHH
Confidence             2233466777778888887765

>smart00787 Spc7 Spc7 kinetochore protein

Probab=84.68  E-value=31  Score=34.49  Aligned_cols=140  Identities=21%  Similarity=0.248  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhHH
Q 015554          107 VLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKAS-EDAKKLVDEERAFAR  185 (405)
Q Consensus       107 vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqAS-eDAkkiV~eERa~A~  185 (405)
                      -|++.|+..|+.=.+.+-. .+.-+.+-+..+.-+--+|..+-.+|..|=..++.+..-+..-. ++.+++- ++=+...
T Consensus       140 kllegLk~~L~~~~~~l~~-D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l~~~~  217 (312)
T smart00787      140 KLLEGLKEGLDENLEGLKE-DYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKLKKLL  217 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHHHHHH
Confidence            3455555555543333321 12225566666666666777777777666666666666554422 2333443 5556667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHH
Q 015554          186 AEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQL  253 (405)
Q Consensus       186 aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql  253 (405)
                      .+|+..+.-+.-+++-|++-+..-... ++...++..+|++|+++.-=+..   ++ -+|+..|+.++
T Consensus       218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~-~~~k~e~~~~I~~ae~~~~~~r~---~t-~~Ei~~Lk~~~  280 (312)
T smart00787      218 QEIMIKVKKLEELEEELQELESKIEDL-TNKKSELNTEIAEAEKKLEQCRG---FT-FKEIEKLKEQL  280 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC---CC-HHHHHHHHHHH
Confidence            777777777777777776666554433 44788899999999997533222   22 25666666554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=84.36  E-value=1e+02  Score=37.10  Aligned_cols=91  Identities=19%  Similarity=0.187  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccC--CccccccHHHHHHHHHHHHHHhHHH
Q 015554          183 FARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQ--PSKVMDMEHELRALRIQLAEKSKCS  260 (405)
Q Consensus       183 ~A~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~--PSKvMDME~El~~LR~ql~eKs~~~  260 (405)
                      ...++++.+...+..++..+.+........ .+++..+...++...++++|-+  |--.-+++..+.....++.++....
T Consensus       380 eleeEleelEeeLeeLqeqLaelqqel~el-Q~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL  458 (1486)
T PRK04863        380 ENEARAEAAEEEVDELKSQLADYQQALDVQ-QTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEEL  458 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555544444332222211 2367788888999999999987  3344567888888888888888888


Q ss_pred             HHHHHHHHHhhhhh
Q 015554          261 LLLRKELAMSKRIE  274 (405)
Q Consensus       261 v~L~KEL~~~kr~~  274 (405)
                      ..+..+|.+++..-
T Consensus       459 ~elE~kL~~lea~l  472 (1486)
T PRK04863        459 LSLEQKLSVAQAAH  472 (1486)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888887655433

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=83.61  E-value=25  Score=30.78  Aligned_cols=21  Identities=14%  Similarity=0.150  Sum_probs=15.3

Q ss_pred             chHHHHHHHHHHHHHhhcccC
Q 015554          104 EKHVLLKKLRDALESLRGRVA  124 (405)
Q Consensus       104 er~vLLKkLR~~LesLrGRva  124 (405)
                      =+++|.|.++.+|+.=+.++.
T Consensus        24 l~kfl~kPi~~~l~~R~~~I~   44 (141)
T PRK08476         24 LNSWLYKPLLKFMDNRNASIK   44 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            356788888888887665554

>TIGR01069 mutS2 MutS2 family protein

Probab=83.52  E-value=17  Score=40.28  Aligned_cols=80  Identities=23%  Similarity=0.271  Sum_probs=48.3

Q ss_pred             CCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015554          125 GRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKAS----EDAKKLVDEERAFARAEIESARAAVQRVEE  200 (405)
Q Consensus       125 GrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqAS----eDAkkiV~eERa~A~aEIE~ArAaV~Rve~  200 (405)
                      |..+.++++-|.=.+..-.++-+...++.+.+.|++++-.-|++..    +.-+++.++.|..|+..|+.||.-+..+-.
T Consensus       507 ~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~  586 (771)
T TIGR01069       507 GEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIR  586 (771)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666666666666666665555444433    334556666677777777777766655555


Q ss_pred             HHHH
Q 015554          201 SLQE  204 (405)
Q Consensus       201 al~E  204 (405)
                      -|++
T Consensus       587 ~lk~  590 (771)
T TIGR01069       587 ELKE  590 (771)
T ss_pred             HHHh
Confidence            5543

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=83.23  E-value=75  Score=34.68  Aligned_cols=6  Identities=17%  Similarity=0.479  Sum_probs=2.8

Q ss_pred             cCCeEE
Q 015554          350 YNGQQI  355 (405)
Q Consensus       350 ~~g~k~  355 (405)
                      +||+.+
T Consensus       644 ldG~~~  649 (1164)
T TIGR02169       644 LEGELF  649 (1164)
T ss_pred             eCceeE
Confidence            445444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK09039 hypothetical protein; Validated

Probab=82.37  E-value=58  Score=32.73  Aligned_cols=119  Identities=21%  Similarity=0.268  Sum_probs=57.9

Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHHHH---hhHHHHHHHHH----------HHHhHHHHHH-------HHHHHHHHHHH
Q 015554          141 LAVQLTQREGELIQEKAEVKKLADFLKK---ASEDAKKLVDE----------ERAFARAEIE-------SARAAVQRVEE  200 (405)
Q Consensus       141 LavqltqrE~ELiQeK~EVkKlA~~lKq---ASeDAkkiV~e----------ERa~A~aEIE-------~ArAaV~Rve~  200 (405)
                      |..++|.++.||-+-..++.-|+..|..   .+.|....+.+          +|+....-..       .+.+.....++
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~  123 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ  123 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence            4556666777776666666666644432   23333222221          2221111111       11222333344


Q ss_pred             HHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015554          201 SLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELA  268 (405)
Q Consensus       201 al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~~~v~L~KEL~  268 (405)
                      .|.+....+..... ++..|+.+|..-|+=        .-.+|.+|.++..+.++.....-.|..+|.
T Consensus       124 ~L~~~k~~~se~~~-~V~~L~~qI~aLr~Q--------la~le~~L~~ae~~~~~~~~~i~~L~~~L~  182 (343)
T PRK09039        124 ELDSEKQVSARALA-QVELLNQQIAALRRQ--------LAALEAALDASEKRDRESQAKIADLGRRLN  182 (343)
T ss_pred             HHHHHHHHHHHhhH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444333333 455555555554442        445566666666666666666667777775

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=82.00  E-value=28  Score=38.40  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=25.2

Q ss_pred             ccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 015554          237 SKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKR  272 (405)
Q Consensus       237 SKvMDME~El~~LR~ql~eKs~~~v~L~KEL~~~kr  272 (405)
                      .+.=|||.||+.||..|..|-..+..|.+|+.-...
T Consensus       545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334477888888888888888777777777753333

; GO: 0016021 integral to membrane

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=81.42  E-value=33  Score=30.09  Aligned_cols=50  Identities=22%  Similarity=0.304  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 015554          105 KHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAE  158 (405)
Q Consensus       105 r~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~E  158 (405)
                      ..++.|.+.+.|+.=+.++.|    ++++|-..-+-..-.+.+-+..|.+-+.|
T Consensus        23 ~~f~~kpi~~~l~~R~~~I~~----~l~~A~~~~~eA~~~~~e~~~~l~~a~~e   72 (159)
T PRK13461         23 KHFFFDKIKAVIDSRQSEIDN----KIEKADEDQKKARELKLKNERELKNAKEE   72 (159)
T ss_pred             HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888888887777654    44444444333344444444444444433

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=80.51  E-value=47  Score=31.17  Aligned_cols=77  Identities=27%  Similarity=0.387  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 015554          104 EKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAF  183 (405)
Q Consensus       104 er~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~  183 (405)
                      =..++++.++.+|+.=+.++.+    ++++|-.+-+-..-.+.+-|.+|.+-+.|...+   +..|-++|++..+++|..
T Consensus        70 L~k~~~~pI~~vLe~R~~~I~~----~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I---i~~Ar~ea~~~~e~~~~~  142 (204)
T PRK09174         70 MSRVILPRIGGIIETRRDRIAQ----DLDQAARLKQEADAAVAAYEQELAQARAKAHSI---AQAAREAAKAKAEAERAA  142 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            3567888899999988777754    555555554444444444555554444443333   223333444444444433


Q ss_pred             HHHH
Q 015554          184 ARAE  187 (405)
Q Consensus       184 A~aE  187 (405)
                      |++|
T Consensus       143 a~~e  146 (204)
T PRK09174        143 IEAS  146 (204)
T ss_pred             HHHH
Confidence            3333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	405
4dix_A	230	Crystal Structure Of The Ig-Ph Domain Of Actin-Bind		8e-47
4djg_A	52	Crystal Structure Of The Coiled-Coil 1 Domain Of Ac		5e-19

>pdb|4DIX|A Chain A, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding Protein Scab1 Length = 230

Iteration: 1
 Score =  184 bits (467), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 80/117 (68%), Positives = 100/117 (85%)
Query: 270 SKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGAT 329
           S + EE +S  YE+DG+EALGS LR++PCSN+ P+LSKC+IQWYR  S+G K+ELISGAT
Sbjct: 4   SSKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGAT 63
Query: 330 KSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHV 386
           KSVYAPEPFDVGR+L A+I Y+G  ++L+T G +DPA GLGSYVEALVRKHDV+F+V
Sbjct: 64  KSVYAPEPFDVGRVLHADIIYDGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNV 120

>pdb|4DJG|A Chain A, Crystal Structure Of The Coiled-Coil 1 Domain Of Actin-Binding Protein Scab1 Length = 52

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/46 (100%), Positives = 46/46 (100%)
Query: 106 HVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 151
           HVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE
Sbjct: 7   HVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
4dix_A	230	Plectin-related protein; PH domain, IG domain, mal	8e-53
4djg_A	52	Plectin-related protein; coiled-coil, four helix b	6e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	8e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-04

>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana} Length = 230

 Score =  174 bits (443), Expect = 8e-53
 Identities = 80/118 (67%), Positives = 100/118 (84%)

Query: 270 SKRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGAT 329
           S + EE +S  YE+DG+EALGS LR++PCSN+ P+LSKC+IQWYR  S+G K+ELISGAT
Sbjct: 4   SSKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGAT 63

Query: 330 KSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVR 387
           KSVYAPEPFDVGR+L A+I Y+G  ++L+T G +DPA GLGSYVEALVRKHDV+F+V 
Sbjct: 64  KSVYAPEPFDVGRVLHADIIYDGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNVV 121

>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana} Length = 52

 Score = 76.3 bits (187), Expect = 6e-18
 Identities = 51/52 (98%), Positives = 51/52 (98%)

Query: 100 AASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 151
           A SLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE
Sbjct: 1   ATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 52

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 3e-11
 Identities = 66/448 (14%), Positives = 130/448 (29%), Gaps = 147/448 (32%)

Query: 38  ANNQVVDGKDDPKV--LSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEA 95
             +  V  K D K+  L++K         +LE  ++L  +      +    + +  S   
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNC--NSPETVLEMLQKLLYQ-----IDPNWTSRSDHSSNI 223

Query: 96  KLR-EAASLEKHVLL--KKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQ----LTQR 148
           KLR  +   E   LL  K   + L  L          +V+ A     A  +     LT R
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVL---------LNVQNA-KAWNAFNLSCKILLTTR 273

Query: 149 EGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARAEIES--ARAAVQRVE------- 199
                      K++ DFL  A+     L          E++S   +    R +       
Sbjct: 274 F----------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 200 -----------ESLQEH------------EQMSRASGKQDFEELMKEVQEARRI-KML-- 233
                      ES+++             ++++    +     L  E  E R++   L  
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVL--EPAEYRKMFDRLSV 380

Query: 234 -----HQPSKVMDM---EHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYELDG 285
                H P+ ++ +   +     + + + +  K SL+ ++    +  I         +  
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-------PSI-- 431

Query: 286 SEALGSYLRIKPCSNNGPELSKCSIQWYRVP-------------------------SEGG 320
                 YL +K    N   L +  +  Y +P                             
Sbjct: 432 ------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 321 KRELISGATKSVYAPEPFDVGRILQAEITYNGQQITLTTTGAVDPAPGLGSYVEALVRKH 380
             E ++     V+     D  R L+ +I ++                  GS +  L    
Sbjct: 486 HPERMTLFRM-VF----LDF-RFLEQKIRHDST-----------AWNASGSILNTL---Q 525

Query: 381 DVEF---HVRAPPQHPPPQHHFQDFTHF 405
            ++F   ++      P  +        F
Sbjct: 526 QLKFYKPYIC--DNDPKYERLVNAILDF 551

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 76/436 (17%), Positives = 125/436 (28%), Gaps = 165/436 (37%)

Query: 7   DFG-NTMQ---KDAVPAVSADVVFASSRFPNYKIGANNQVVDGKDDPK-VLSMKEV---V 58
           DF     Q   KD +       VF       +    N    D +D PK +LS +E+   +
Sbjct: 8   DFETGEHQYQYKDILS------VFE----DAFV--DNFDCKDVQDMPKSILSKEEIDHII 55

Query: 59  ARETAQ---------LLEQQKRLSVRDLANKF-EKGLAA-----AAKLSEEAKLREAA-- 101
             + A          LL +Q+ +       KF E+ L        + +  E +       
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 102 --------------SLEK-HV----LLKKLRDALESLR--------GRVAG--------- 125
                            K +V       KLR AL  LR        G V G         
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-VLGSGKTWVALD 169

Query: 126 --------------------RNKDDVEEAIAMVEALAVQLTQ-------REGELIQEKAE 158
                               +N +  E  + M++ L  Q+             +      
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 159 VK-KLADFLKKASEDAKK--LV-----DEE--RAFA---------R-AEIESARAAVQRV 198
           ++ +L   LK  S+  +   LV     + +   AF          R  ++    +A    
Sbjct: 230 IQAELRRLLK--SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 199 EESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDME-HELR--ALRIQLAE 255
             SL  H                 EV+      +L    K +D    +L    L      
Sbjct: 288 HISLDHHSMT--------LTP--DEVKS-----LL---LKYLDCRPQDLPREVLTTNPRR 329

Query: 256 KSKCSLLLRKELAM--------SKRIEEKLSDSYE-LDGSEALGSY--LRIKPCSNNGPE 304
            S  +  +R  LA           ++   +  S   L+ +E    +  L + P S + P 
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 305 --LSKCSIQWYRVPSE 318
             L   S+ W+ V   
Sbjct: 390 ILL---SLIWFDVIKS 402

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 41/233 (17%), Positives = 93/233 (39%), Gaps = 31/233 (13%)

Query: 50   KVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLL 109
            K + +++ V    A++   +   ++  L   + + +A      E  KL+  A   +    
Sbjct: 866  KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR----ELKKLKIEARSVER--Y 919

Query: 110  KKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKA 169
            KKL   LE+   ++  +    ++E     ++L  ++   E     E  +++   + L+ +
Sbjct: 920  KKLHIGLENKIMQLQRK----IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975

Query: 170  SEDAKKL------VDEERAFARAEIESARAAVQRVEESLQEHEQMSR---ASGKQDFEEL 220
             E+AK        + EE A  R E+   +   + +EE   +++  +    +  K+    L
Sbjct: 976  EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035

Query: 221  MKEVQEARRIKMLHQPSKVMDMEHELR-ALRIQLAEKSKCSLLLRKELAMSKR 272
              E +E  R        ++ D   E+   +  +L E++K    L  +L   + 
Sbjct: 1036 KTEKEELNR--------RIHDQAKEITETMEKKLVEETK---QLELDLNDERL 1077

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 38/248 (15%), Positives = 88/248 (35%), Gaps = 14/248 (5%)

Query: 50   KVLSMKEVVARETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEK---- 105
            +    ++  A    + LEQ+    + +  N  ++ L A  +L  EA+        K    
Sbjct: 867  QRTKERQQKAEAELKELEQKHT-QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925

Query: 106  ----HVLLKKLRDALESLRGRVAGRNK--DDVEEAIAMVEALAVQLTQREGELIQEKAEV 159
                H +  ++ +  E  +   A + K    + +    +E       + + E +    ++
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985

Query: 160  KKLADFLKKASEDAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEE 219
            KK+ D +    +   KL  E +      +      +   EE  +   ++ +   +    E
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKL-LEERVSDLTTNLAEEEEKAKNLTKL-KNKHESMISE 1043

Query: 220  LMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEKLSD 279
            L   +++  + +   +      +E E   L  Q+AE       L+ +LA  +   +    
Sbjct: 1044 LEVRLKKEEKSRQELE-KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 280  SYELDGSE 287
              E + S+
Sbjct: 1103 RLEDETSQ 1110

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 35/225 (15%), Positives = 84/225 (37%), Gaps = 16/225 (7%)

Query: 53   SMKEVVARETAQLLEQQKRL-SVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKK 111
             ++        ++ + +  +  + D  NK  K      +   +     A   EK   L K
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 112  LRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE 171
            L++  ES+   +    +  +++     + L     + EGE      ++ +L   + +   
Sbjct: 1033 LKNKHESMISEL----EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088

Query: 172  DAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIK 231
               K  +EE   A A +E   +      + ++E E            +L ++++  +  +
Sbjct: 1089 QLAKK-EEELQAALARLEDETSQKNNALKKIRELES--------HISDLQEDLESEKAAR 1139

Query: 232  MLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMSKRIEEK 276
               +  +  D+  EL AL+ +L +    +   ++EL  S   ++ 
Sbjct: 1140 NKAE-KQKRDLSEELEALKTELEDTLD-TTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 38/216 (17%), Positives = 85/216 (39%), Gaps = 22/216 (10%)

Query: 67   EQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLRGRVAGR 126
            E++ +    +L    E+   A A+L E  +       EK++L +KL+   E         
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA------ 909

Query: 127  NKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVDEERAFARA 186
                  EA  M   LA +  + E  L + +A +++  +  ++   + KK+  +       
Sbjct: 910  ------EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD-LEE 962

Query: 187  EIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHEL 246
            ++E   AA Q+++      +        +  E+ +  +++  +   L +  K   +E  +
Sbjct: 963  QLEEEEAARQKLQLEKVTADGK-----IKKMEDDILIMED--QNNKLTKERK--LLEERV 1013

Query: 247  RALRIQLAEKSKCSLLLRKELAMSKRIEEKLSDSYE 282
              L   LAE+ + +  L K     + +  +L    +
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 18/173 (10%)

Query: 61   ETAQLLEQQKRLSVRDLANKFEKGLAAAAKLSEEAKLREAASLEKHVLLKKLRDALESLR 120
                LL  +KR  + +       GL          KLR+  +      +K L+ +L    
Sbjct: 1902 NQVVLLINEKRDQLEEEQLHLNIGL---------KKLRDTEA-----QVKDLQVSLAQKN 1947

Query: 121  GRVAGRNKDDVEEAIAMV--EALAVQLTQREGELIQEKAEVKKLADFLKKASEDAKKLVD 178
              +  +N+    + +  +  +  A ++ Q++   +Q + +V+     ++K    A     
Sbjct: 1948 RELDVKNE-QANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006

Query: 179  EERAFARAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIK 231
            E     R E+E    A   ++    E      A  K       +E     R  
Sbjct: 2007 EPTGPLREEVEQLENAANELKLKQDEIVATITALEKS-IATYKEEYATLIRET 2058

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 38   ANNQVVDGKDDPKVLSMKEVVA-RETAQLL-----EQQKRLSVRDLANKFEKGLAAAAKL 91
               QV D +      + +  V   +  Q L     +QQ     +  A + +  L    K 
Sbjct: 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKE 1991

Query: 92   SEEAKLREAASLEKHVLLKKLRDALESLRGRVAGRNKDDVEE--AIAMVEALAVQLTQRE 149
                K++  A LEK      LR+ +E L            E    I  +E       +  
Sbjct: 1992 IAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY 2051

Query: 150  GELIQEKAEVKKLADFLKKASEDAKKLVD 178
              LI+E  ++K  +  +K   + +  L+D
Sbjct: 2052 ATLIRETEQIKTESSKVKNKVDRSIALLD 2080

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 7/36 (19%)

Query: 155 EKAEVKKLADFLKKASEDAKKLVDEERAFA-RAEIE 189
           EK  +KKL   LK  ++D+        A A +A +E
Sbjct: 18  EKQALKKLQASLKLYADDSAP------ALAIKATME 47

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/156 (12%), Positives = 54/156 (34%), Gaps = 14/156 (8%)

Query: 56   EVVARETAQLLEQQKRL--SVRDLANKFEKGLAAAAKLSEEAKLREAASL--EKHVLLKK 111
            E   +E A+ L  + +    +  L  K+ + L      +    +   ++   +    ++ 
Sbjct: 864  EKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQA 923

Query: 112  LRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASE 171
                LE+  G      +    ++ + + ++  QLT+     + E  E  +   F  +   
Sbjct: 924  KLKNLEAFDGEC----QSLEGQSNSDLLSILAQLTELNYNGVPELTE--RKDTFFAQQWT 977

Query: 172  DAKKLVDEERAFARAEIESARAAVQRVEESLQEHEQ 207
              K   +  +      + +    +Q++E+    H  
Sbjct: 978  GVKSSAETYKN----TLLAELERLQKIEDLHHHHHH 1009

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
4dix_A	230	Plectin-related protein; PH domain, IG domain, mal	100.0
4djg_A	52	Plectin-related protein; coiled-coil, four helix b	99.95
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.78
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	88.62
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	85.97

>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=1.7e-63  Score=459.79  Aligned_cols=133  Identities=61%  Similarity=1.069  Sum_probs=123.8

Q ss_pred             hhhhcccCCceeeccccccCcceeEeeCCCCCCCCCCcceeEEEecCCCCccccccccccccccCCCCcccceeeeEeec
Q 015554          271 KRIEEKLSDSYELDGSEALGSYLRIKPCSNNGPELSKCSIQWYRVPSEGGKRELISGATKSVYAPEPFDVGRILQAEITY  350 (405)
Q Consensus       271 kr~~en~~~~yeLeG~e~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~LqadI~~  350 (405)
                      .+.++|.+++|+|+|+|+|||+|+|+||+|++||||+|+|||||+++||||+|+|||||||+||||||||||+|||||++
T Consensus         5 ~~~e~n~~~~y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~   84 (230)
T 4dix_A            5 SKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY   84 (230)
T ss_dssp             --------CCEEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE
T ss_pred             cccccCCCcceeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCCCCCCCchhHHHHHhhcCCceeeEeecCC----CCCCcccccccc
Q 015554          351 NGQQITLTTTGAVDPAPGLGSYVEALVRKHDVEFHVRAPPQ----HPPPQHHFQDFT  403 (405)
Q Consensus       351 ~g~k~~~~T~GPidpaaGL~~yVEaL~rk~~tEFNVvi~Q~----~~~~s~hv~~~~  403 (405)
                      ||++++++|+|||||||||++|||+|+||+++||||||+||    |+++|+||+|..
T Consensus        85 ~G~k~t~~T~gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vg  141 (230)
T 4dix_A           85 DGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVG  141 (230)
T ss_dssp             TTEEEEEEEEEEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEE
T ss_pred             CCcEEEEEecCCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEec
Confidence            99999999999999999999999999999999999999999    999999999865

>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana}

Probab=99.95  E-value=4.9e-29  Score=187.32  Aligned_cols=52  Identities=98%  Similarity=1.230  Sum_probs=48.6

Q ss_pred             hhhhchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHHHHHHhhhhhhh
Q 015554          100 AASLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE  151 (405)
Q Consensus       100 va~Ler~vLLKkLR~~LesLrGRvaGrnKddveeaismVeaLavqltqrE~E  151 (405)
                      +|+||||+||||||++||+|||||||||||||||||||||||||||||||+|
T Consensus         1 ~a~Ler~vLlKkLr~~Le~L~GRvaGrnkddveeaismVealavqltqrE~E   52 (52)
T 4djg_A            1 ATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE   52 (52)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred             CcchhHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5899999999999999999999999999999999999999999999999997

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.78  E-value=0.55  Score=56.91  Aligned_cols=139  Identities=14%  Similarity=0.152  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 015554          129 DDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLADFLKKASED---AKKLVDEERAFARAEIESARAAVQRVEESLQEH  205 (405)
Q Consensus       129 ddveeaismVeaLavqltqrE~ELiQeK~EVkKlA~~lKqASeD---AkkiV~eERa~A~aEIE~ArAaV~Rve~al~Eq  205 (405)
                      +-+.+|-.-|+.|-.+|+..+-+|.+.+.|..++-.-+...+.+   -|+.|+++.+.+..+-+.+.+--..+++-|.+-
T Consensus      1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A 2006 (3245)
T 3vkg_A         1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34678899999999999999999999988888765555443333   344555444443332222222222233333322


Q ss_pred             HHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 015554          206 EQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLRKELAMS  270 (405)
Q Consensus       206 e~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~~~v~L~KEL~~~  270 (405)
                      +-.  .-.+++++++.++..+|.. ++-..=.++-+.|.+|..|+.++.+...+.-.|+.|++.+
T Consensus      2007 ~Pa--~Pkr~~l~~ae~~l~~~~~-~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A         2007 EPT--GPLREEVEQLENAANELKL-KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp             ------CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC--ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211  2223355555555544432 1111123455678899999999999988888888887643

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=88.62  E-value=2.6  Score=46.18  Aligned_cols=77  Identities=12%  Similarity=0.110  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHHHhhhhccCCccccccHHHHHHHHHHHHHHhHHHHHHH
Q 015554          185 RAEIESARAAVQRVEESLQEHEQMSRASGKQDFEELMKEVQEARRIKMLHQPSKVMDMEHELRALRIQLAEKSKCSLLLR  264 (405)
Q Consensus       185 ~aEIE~ArAaV~Rve~al~Eqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~eKs~~~v~L~  264 (405)
                      ..|.+++.+-|..+++-+++.+...+...+ +.+.|.++.++..  .-|+  .||-.|+.|...||+|+.+-........
T Consensus       976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~k-e~~~lee~~~~~~--~~L~--~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A          976 EEEAKNATNRVLSLQEEIAKLRKELHQTQT-EKKTIEEWADKYK--HETE--QLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555544433332 2333333322222  1333  8899999999999999988776555555


Q ss_pred             HH
Q 015554          265 KE  266 (405)
Q Consensus       265 KE  266 (405)
                      ++
T Consensus      1051 ~~ 1052 (1080)
T 2dfs_A         1051 KE 1052 (1080)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00