Citrus Sinensis ID: 015564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
Protein Sequence
MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLPT
Secondary Structure (PSIPRED)
cccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mkngmiecsvchsklvspttksISRAYdrhktrvsskQRVLNVFLVVGDCMLVGLQPILVYMSkvdgrfkfspisVNFLTEMTKVLFAIVMLFFQARHqkvgekplLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVnqlrslpegstamglpvaMGAYIYTLIFITVPSMASVFNeyalksqydtsIYLQNLFLYGYGAIFNFLGILVTAIfkgpdnldilqgHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKakdeqqngthelrdvqenhrskeSFIDIAAGANEeaahrigsderqpllpt
Flexible Loop (DISEMBL)
mkngmiecsvchsklvspttksisraydrhktrvsskqrvLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHelrdvqenhrsKESFIDIAAGANEeaahrigsderqpllpt
Low Complexity Region (SEG)
MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNlkvlviavllkiiMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLPT
Disordered region (IsUnstruct)
*******CSVCHS***********************KQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS*******************************************************
Disordered Region (DISOPRED)
******E********************************VLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR***********PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF*********************************************************
Disordered Region (DISEMBL)
MKNGMIECSVCHSKLVSPTTKSISRA*********SKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL*************LRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLPT
Disordered Region (DISPRO)
****MIECSVCHSKLVSP*****SR*YDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPE*****GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLS****************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSxxxxxxxxxxxxxxxxxxxxxHRSKESFIDIAAGANEEAAHRIGSDERQPLLPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	404	2.2.26 [Sep-21-2011]
Q9C5H6	405	CMP-sialic acid transport	yes	no	0.997	0.995	0.826	0.0
Q8GY97	406	CMP-sialic acid transport	no	no	0.997	0.992	0.824	0.0
Q8LGE9	340	CMP-sialic acid transport	no	no	0.737	0.876	0.299	4e-34
F4JN00	352	CMP-sialic acid transport	no	no	0.705	0.809	0.301	4e-31
A4IHW3	321	Probable UDP-sugar transp	yes	no	0.752	0.947	0.274	5e-24
Q6DCG9	413	Probable UDP-sugar transp	N/A	no	0.784	0.767	0.251	7e-21
Q90X48	440	Probable UDP-sugar transp	yes	no	0.792	0.727	0.25	4e-19
A0JMG9	314	Probable UDP-sugar transp	no	no	0.695	0.894	0.265	4e-19
Q9BS91	424	Probable UDP-sugar transp	yes	no	0.799	0.761	0.251	6e-19
Q5R4D7	424	Probable UDP-sugar transp	yes	no	0.794	0.757	0.244	2e-18

>sp|Q9C5H6|CSTR3_ARATH CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/404 (82%), Positives = 367/404 (90%), Gaps = 1/404 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNG+ EC  CHSKLVSP +K+ISRAYD HK RVSSKQRVLNV LVVGDCMLVGLQP+LV
Sbjct: 1   MKNGIAECPACHSKLVSPGSKTISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+ KV+FAIVML  QARHQKVGEKPLLS+STF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK++M+RRFSIIQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA+G+P+A GAY+ T+IF+TVPSMASVFNEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDE-QQ 359
           AD ILKKYSSTVATIFTGIASA LFGH +TMNFLLGISIVFISMHQFFS L+KA+DE QQ
Sbjct: 301 ADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKARDEQQQ 360

Query: 360 NGTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLP 403
           NG  EL + ++ HR+ ESFI++AAGANEEA+HR  SD+R PLLP
Sbjct: 361 NGNLELGNTKDTHRANESFINMAAGANEEASHRGESDDRTPLLP 404

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY97|CSTR2_ARATH CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/405 (82%), Positives = 368/405 (90%), Gaps = 2/405 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRH--KTRVSSKQRVLNVFLVVGDCMLVGLQPI 58
           MKNGM ECSVC S+LVSP++K+ISRAYD +  K RVSSKQR LNVFLVVGDCMLVGLQP+
Sbjct: 1   MKNGMAECSVCRSRLVSPSSKAISRAYDNYNYKIRVSSKQRALNVFLVVGDCMLVGLQPV 60

Query: 59  LVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARN 118
           LVYMSKVDG+F FSPISVNFLTE+ KV+FA+VML FQARHQKVGEKPLLS+STF+QAARN
Sbjct: 61  LVYMSKVDGKFNFSPISVNFLTEIAKVIFAMVMLLFQARHQKVGEKPLLSLSTFVQAARN 120

Query: 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEA 178
           N+LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK+IM+RRFSIIQWEA
Sbjct: 121 NMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMIMKRRFSIIQWEA 180

Query: 179 LALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTS 238
           LALLLIGIS+NQLRSLPEG+T + +P+A GAYI T IF+TVPS+ASV+NEYALKSQYDTS
Sbjct: 181 LALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSLASVYNEYALKSQYDTS 240

Query: 239 IYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFL 298
           IYLQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF 
Sbjct: 241 IYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFF 300

Query: 299 KYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQ 358
           KYAD ILKKYSSTVATIFTGIASA LFGH LTMNFLLGISIVFISMHQFFS LSKAKDEQ
Sbjct: 301 KYADTILKKYSSTVATIFTGIASAALFGHILTMNFLLGISIVFISMHQFFSPLSKAKDEQ 360

Query: 359 QNGTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLP 403
           QNG  EL D ++ HR+K+SFI++AAGA EEA+HRI SD+R PLLP
Sbjct: 361 QNGNIELVDAKDGHRAKDSFINMAAGATEEASHRIESDDRVPLLP 405

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1

 Score =  145 bits (367), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 171/311 (54%), Gaps = 13/311 (4%)

Query: 44  FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGE 103
           F+ V   +L   Q IL  +S+ DG +K+   +V FL E+ K++ + + L+   R  +   
Sbjct: 8   FVAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLW---REMRTSS 64

Query: 104 KPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLL 163
                I+T  ++ R   L  +P+ +Y I+N ++F    Y + +T +++ NLK++   +L 
Sbjct: 65  STTSRITTDWKSVR---LFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILF 121

Query: 164 KIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMA 223
           ++ ++R+ S +QW A+ LL +G + +Q++   E S        +  Y+  ++   + ++A
Sbjct: 122 RLFLKRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALA 181

Query: 224 SVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIF-----KGPDNLDILQGHSK 278
            ++ E+ +K   DT +Y QNL LY +G++FN +  L+   F     KGP    I  G+S 
Sbjct: 182 GIYTEFLMKRNNDT-LYWQNLQLYTFGSLFN-VARLIADDFRHGFEKGPWWQRIFDGYSI 239

Query: 279 ATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGIS 338
            T L++ N  + G+L  + +KYAD I+K YS+++A + T +AS  LF    T+   LGI 
Sbjct: 240 TTWLVVLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIV 299

Query: 339 IVFISMHQFFS 349
           I  +S+H +F+
Sbjct: 300 ICIMSLHMYFA 310

Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1

 Score =  135 bits (341), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 10/295 (3%)

Query: 51  MLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSIS 110
           +L   Q IL+  SK  G++++S  + NFL    K   +++ L    +++ V +   LS +
Sbjct: 60  ILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS-T 118

Query: 111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRR 170
           TF +      +  +PA LY   N L++ +  Y +    ++L NL ++   VL +II++R+
Sbjct: 119 TFDEVK----VFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRK 174

Query: 171 FSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYA 230
            S IQW    LL  G +  QL S  +      LP     +   ++   +   A V+ E  
Sbjct: 175 LSEIQWAGFILLCCGCTTAQLNSNSDRVLQTSLP----GWTMAIVMALLSGFAGVYTEAI 230

Query: 231 LKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQ 290
           +K +   +I +QN +LY +G  FN + I++   F    N     G+S  T+L+I N+A  
Sbjct: 231 IKKRPSRNINVQNFWLYVFGMAFNAVAIVIQD-FDAVANKGFFHGYSFITLLMILNHALS 289

Query: 291 GILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMH 345
           GI     +KYAD I+K YS++VA + T + S  LF   L++ F LG ++V +S++
Sbjct: 290 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVY 344

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A4IHW3|S35A4_XENTR Probable UDP-sugar transporter protein SLC35A4 OS=Xenopus tropicalis GN=slc35a4 PE=2 SV=1

 Score =  112 bits (280), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 165/324 (50%), Gaps = 20/324 (6%)

Query: 28  DRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLF 87
           +   +R   KQ +  + LV+    + G    L+Y+ KV+G   FS  +V  L E++K  F
Sbjct: 12  NHSPSRKRLKQILWGLMLVL-SVTIYGSHAPLIYLCKVNGEIPFSSSAVVLLIELSK--F 68

Query: 88  AIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPAT 147
            I ++FF  +  K  +    S+S  + A       AVPA LY  NN L   +Q + +P++
Sbjct: 69  VISLVFFLIQDWKSLKA---SVSWHLAAPY-----AVPAVLYGANNNLVVYIQHFMDPSS 120

Query: 148 VKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLL---IGISVNQLRSLPEGSTAMGLP 204
            ++LSNLK++  AVL  + +R+R S+ +W ++ LLL   +  S   ++ L + S+   L 
Sbjct: 121 FQVLSNLKIVSTAVLYSLFLRQRLSVRRWLSVFLLLAAGVFYSYGGIQDLEKVSSDTNLY 180

Query: 205 VAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIF 264
           V +   +  L +  +  +++V+ E  LK+Q    + +QNL+LY +G I N     +TA  
Sbjct: 181 VTLPGLLLMLAYCLISGLSAVYTEMTLKTQ-KIPLNMQNLYLYSFGIIIN-----LTAHL 234

Query: 265 KGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL 324
               N D   G S    ++I + A  G++    +K ++ I + +  + + +  G  S +L
Sbjct: 235 TSSKNSDFFDGFSVWVWVIILSQALNGLIMSLVMKLSNNITRLFIISFSMLANGFLSFIL 294

Query: 325 FGHTLTMNFLLGISIVFISMHQFF 348
           F   LT  F L + ++ ++++ ++
Sbjct: 295 FQLQLTALFFLAVVLIGLAVYMYY 318

Xenopus tropicalis (taxid: 8364)

>sp|Q6DCG9|S35A5_XENLA Probable UDP-sugar transporter protein SLC35A5 OS=Xenopus laevis GN=slc35a5 PE=2 SV=1

 Score =  102 bits (253), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 162/370 (43%), Gaps = 53/370 (14%)

Query: 66  DGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVP 125
           D ++ + P +VN   E  K+LF + M       ++   +   S+  F Q  +     AVP
Sbjct: 44  DNKYDYVPATVNVCAEAVKLLFCMAMSVRIIMTERRSFRCHASLKHFCQYMK----WAVP 99

Query: 126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIG 185
           AFLY ++N + F +  Y  PA   +LSN  ++  AV  ++I++R+ S +QW +L +L + 
Sbjct: 100 AFLYFLDNLIIFYVLAYLQPAMAVLLSNFVIITTAVFFRLILKRQLSCVQWASLVILFLS 159

Query: 186 I----SVNQ--------------LRSLPEGS-TAMGLP-------------------VAM 207
           I    S N                 S P  S T +  P                   + +
Sbjct: 160 IMGLTSRNDTAHHEVSVDVHHHLFHSAPSNSCTYLNKPDTEAHTVSLKAIANFQFLHLGL 219

Query: 208 GAYIYTLIFITVPSMASVFNEYALK--SQYDTSIYLQNLFLYGYGAIFNFLG-ILVTAIF 264
           G ++  L+   + ++A+++NE  LK   Q   SI++QN  LY +G  FN L  +L    F
Sbjct: 220 GHFL-ILLQCVISALANIYNEKILKEGEQMSESIFIQNSKLYVFGVFFNGLTLVLHDEYF 278

Query: 265 KGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL 324
               +     GH+  ++ LIF  A  G+   F LK+ D +    ++ + T+   I S  +
Sbjct: 279 SKIKSCGFFYGHNGFSVALIFTTAFVGLSVAFILKFRDNMFHVLTAQITTVIITIVSYFV 338

Query: 325 FGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHE-LR----DVQENHRSKESFI 379
           F    +++F L   +V +S+  F  + S+  +       E L+    DV E        +
Sbjct: 339 FSFKPSLDFFLEAPVVLLSI--FIYNASRITESSGTTKREKLKIINGDVWERSNGDGQEL 396

Query: 380 DIAAGANEEA 389
           +    ANE++
Sbjct: 397 EKLTAANEDS 406

Xenopus laevis (taxid: 8355)

>sp|Q90X48|S35A5_DANRE Probable UDP-sugar transporter protein SLC35A5 OS=Danio rerio GN=slc35a5 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 172/384 (44%), Gaps = 64/384 (16%)

Query: 29  RHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV--YMSKVDGRFKFSPISVNFLTEMTKVL 86
           R  +R+ S+     + L +G   L G   IL+  +    + ++ + P SVN + E  K++
Sbjct: 24  RPCSRICSRSSAYTLALGLGFVTL-GTSRILLLKFSGNEENKYDYLPASVNLMAEAIKLV 82

Query: 87  FAIVM----LFFQARHQK-VGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQL 141
           F +VM    +  + R  K +G     S  ++++        +VPAFLY ++N + F +  
Sbjct: 83  FCLVMSVRVIIREGRSFKDLGCSSGASFLSYLK-------WSVPAFLYFLDNLIIFYVIA 135

Query: 142 YFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGI-------------SV 188
           Y  PA   + SN+ +   A L +++++RR S +QW +L +L + I             +V
Sbjct: 136 YLQPAMAVLFSNIVIFTTAFLFRVVLKRRLSWVQWASLIILFLSIVSLTTGNGDQHAMAV 195

Query: 189 NQL-------------------------------RSLPEGSTAMGLPVAMGAYIYTLIFI 217
           + L                               R L +      L      Y+  L+  
Sbjct: 196 HGLHPAHISTPSNSCLKYTHLHQVHQSHNESYWSRELWDSQLIHKLNSFGLGYVLLLLQC 255

Query: 218 TVPSMASVFNEYALK--SQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD-NLDILQ 274
            + ++A+++NE  LK   Q   SI++QN  LY +G +FN L +L+ A ++    +  IL 
Sbjct: 256 FISALANIYNEKILKEGEQLVESIFIQNSKLYLFGLVFNSLTLLLHADYRNLTLHCGILY 315

Query: 275 GHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFL 334
           GH+  ++ L F  AA G+   F LK+ D +    +  + T+     S  LF    +M+F 
Sbjct: 316 GHNVFSVALGFVTAALGLSVAFILKFRDNMFHVLTGQITTVVVTALSFFLFDFQPSMDFF 375

Query: 335 LGISIVFISMHQFFSSLSKAKDEQ 358
           +   +V +S+  + S  SK KD +
Sbjct: 376 MQAPVVLLSIFIYHS--SKMKDPE 397

Danio rerio (taxid: 7955)

>sp|A0JMG9|S35A4_DANRE Probable UDP-sugar transporter protein SLC35A4 OS=Danio rerio GN=slc35a4 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 136/297 (45%), Gaps = 16/297 (5%)

Query: 54  GLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFI 113
           G    L+ + K   +  FS  S   L E +K+  +   L         G    L IS  +
Sbjct: 33  GSHAPLLSLCKTQAQIPFSASSCVLLIETSKLFISFASLL------ASGSVSTLRISISM 86

Query: 114 QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSI 173
             A      AVPA LYA NN+L   MQ Y +P++ ++LSNLK+   A+L    + +R   
Sbjct: 87  TTASP---YAVPAVLYAFNNHLVVFMQAYMDPSSFQVLSNLKIASTALLYTSCLGKRLHR 143

Query: 174 IQWEALALLL-IGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALK 232
            QW A+ LL+  G+S +      EG     + +     +  L++  V  +A+V+ E  LK
Sbjct: 144 RQWFAMGLLVSAGVSHSCFSYDLEGKRETAVYITSWGLLLVLVYCFVSGLAAVYTERVLK 203

Query: 233 SQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGI 292
           SQ    + +QNLFLY +G + N    L      G +     +G+S    +++    A G+
Sbjct: 204 SQ-RLPLSMQNLFLYTFGVVVNLASHL-----SGGEQKGFFEGYSAVVWVIVAGQVANGL 257

Query: 293 LSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS 349
           L    +K+   I + +  + A +   + S  + G  LT  FL  + ++  +++ +++
Sbjct: 258 LMSVVMKHGTGITRLFVISSAMLVNAVLSWGILGVQLTGYFLFPVVLIGWAVYLYYT 314

Danio rerio (taxid: 7955)

>sp|Q9BS91|S35A5_HUMAN Probable UDP-sugar transporter protein SLC35A5 OS=Homo sapiens GN=SLC35A5 PE=1 SV=2

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 170/394 (43%), Gaps = 71/394 (18%)

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLF--FQARHQKVGEK--PLLSISTFIQAA 116
           Y +  + ++ + P +VN  +E+ K++F +++ F   +  HQ    K       S F++  
Sbjct: 39  YSANEENKYDYLPTTVNVCSELVKLVFCVLVSFCVIKKDHQSRNLKYASWKEFSDFMK-- 96

Query: 117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQW 176
                 ++PAFLY ++N + F +  Y  PA   + SN  ++  A+L +I+++RR + IQW
Sbjct: 97  -----WSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRRLNWIQW 151

Query: 177 EALALLLIGI-----------------------------SVNQLRS-------------- 193
            +L  L + I                             S    RS              
Sbjct: 152 ASLLTLFLSIVALTAGTKTLQHNLAGRGFHHDAFFSPSNSCLLFRSECPRKDNCTAKEWT 211

Query: 194 LPEG---STAM---GLPVAMGAYIYTLIFITVPSMASVFNEYALK--SQYDTSIYLQNLF 245
            PE    +TA     + + MG ++  ++   + SMA+++NE  LK  +Q   SI++QN  
Sbjct: 212 FPEAKWNTTARVFSHIRLGMG-HVLIIVQCFISSMANIYNEKILKEGNQLTESIFIQNSK 270

Query: 246 LYGYGAIFNFLGI-LVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAI 304
           LY +G +FN L + L  +      N     GHS  ++ LIF  A QG+   F LK+ D +
Sbjct: 271 LYFFGILFNGLTLGLQRSNRDQIKNCGFFYGHSAFSVALIFVTAFQGLSVAFILKFLDNM 330

Query: 305 LKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHE 364
                + V T+     S ++F    ++ F L    V +S+  F  + SK +  +     E
Sbjct: 331 FHVLMAQVTTVIITTVSVLVFDFRPSLEFFLEAPSVLLSI--FIYNASKPQVPEYAPRQE 388

Query: 365 -LRDVQENHRSKESFIDIAAGANEEAAHRIGSDE 397
            +RD+  N   + S      G   E   +  SDE
Sbjct: 389 RIRDLSGNLWERSS----GDGEELERLTKPKSDE 418

Homo sapiens (taxid: 9606)

>sp|Q5R4D7|S35A5_PONAB Probable UDP-sugar transporter protein SLC35A5 OS=Pongo abelii GN=SLC35A5 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 170/396 (42%), Gaps = 75/396 (18%)

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLF------FQARHQKVGEKPLLSISTFIQ 114
           Y +  + ++ + P + N  +E+ K++F +++ F       Q+R+ K       S      
Sbjct: 39  YSANEENKYDYLPTTANVCSELVKLVFCVLVSFCVIKKDHQSRNLKYASWKEFS------ 92

Query: 115 AARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSII 174
              N +  ++PAFLY ++N + F +  Y  PA   + SN  ++  A+L +I+++RR + I
Sbjct: 93  ---NFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRRLNWI 149

Query: 175 QWEALALLLIGI-----------------------------SVNQLRS------------ 193
           QW +L +L + I                             S    RS            
Sbjct: 150 QWASLLILFLSIVALTAGTKTLQHNLAGHGFHHDAFFSPSNSCLLFRSECPRKDNCTAKE 209

Query: 194 --LPEG---STAM---GLPVAMGAYIYTLIFITVPSMASVFNEYALK--SQYDTSIYLQN 243
              PE    +TA     + + MG ++  ++   + SMA+++NE  LK  +Q   SI++QN
Sbjct: 210 WTFPEAKWNTTARVFSHIRLGMG-HVLIIVQCFISSMANIYNEKILKEGNQLAESIFIQN 268

Query: 244 LFLYGYGAIFNFLGI-LVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYAD 302
             LY +G +FN L + L  +      N     GH+  ++ LIF  A QG+   F LK+ D
Sbjct: 269 SKLYFFGILFNGLTLGLQRSNRDQIKNCGFFYGHNAFSVALIFVTAFQGLSVAFILKFLD 328

Query: 303 AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGT 362
            +     + V T+     S ++F    ++ F L    V +S+  F  + SK +  +    
Sbjct: 329 NMFHVLMAQVTTVIITTVSVLVFDFRPSLEFFLEAPSVLLSI--FIYNASKPQGPEYAPR 386

Query: 363 HE-LRDVQENHRSKESFIDIAAGANEEAAHRIGSDE 397
            E +RD+  N   + S      G   E   +  SDE
Sbjct: 387 QERIRDLSGNLWERSS----GDGEELERLTKPKSDE 418

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
356536564	403	PREDICTED: probable UDP-sugar transporte	0.997	1.0	0.858	0.0
363808016	403	uncharacterized protein LOC100815055 [Gl	0.997	1.0	0.856	0.0
359478080	405	PREDICTED: probable UDP-sugar transporte	1.0	0.997	0.837	0.0
449446225	402	PREDICTED: CMP-sialic acid transporter 2	0.995	1.0	0.861	0.0
357445115	432	UDP-galactose transporter [Medicago trun	0.992	0.928	0.803	0.0
255577789	898	conserved hypothetical protein [Ricinus	0.960	0.432	0.873	0.0
297820766	405	UDP-galactose transporter 6 [Arabidopsis	0.997	0.995	0.826	0.0
18411150	405	UDP-galactose transporter 6 [Arabidopsis	0.997	0.995	0.826	0.0
145360939	406	nucleotide-sugar transporter [Arabidopsi	0.997	0.992	0.824	0.0
255547474	400	UDP-galactose/UDP-N-acetylglucosamine tr	0.985	0.995	0.825	0.0

>gi|356536564|ref|XP_003536807.1| PREDICTED: probable UDP-sugar transporter protein SLC35A4-like [Glycine max]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/404 (85%), Positives = 375/404 (92%), Gaps = 1/404 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNG++ECSVCHSKLVSP++K+ISRAYDRHK+R+SSKQR LNVFLVVGDC+LVG QPILV
Sbjct: 1   MKNGVMECSVCHSKLVSPSSKTISRAYDRHKSRISSKQRALNVFLVVGDCVLVGFQPILV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+TKV FAIVML  QARHQKVGEKPLLSISTF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPISVNFLTEITKVFFAIVMLLLQARHQKVGEKPLLSISTFMQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIA+LLK+IM+RRFSIIQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIALLLKVIMKRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA+GLPV MGAY YTLIF+TVPS+ASV+NEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGTTALGLPVTMGAYAYTLIFVTVPSLASVYNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T + KGP + DILQGHSKATMLLI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILGTVVVKGPSSFDILQGHSKATMLLIANNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360
           AD ILKKYSSTVATIFTGIASAVLFGHTLTMNF++GISIVFISMHQFFS LSK KDE QN
Sbjct: 301 ADTILKKYSSTVATIFTGIASAVLFGHTLTMNFVIGISIVFISMHQFFSPLSKVKDE-QN 359

Query: 361 GTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLPT 404
           G  EL DV +  RSKESFI++AAGANEEA HR+G DERQPLLP+
Sbjct: 360 GVLELHDVHDKQRSKESFINMAAGANEEATHRVGHDERQPLLPS 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808016|ref|NP_001242719.1| uncharacterized protein LOC100815055 [Glycine max] gi|255636089|gb|ACU18389.1| unknown [Glycine max]

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/404 (85%), Positives = 374/404 (92%), Gaps = 1/404 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNG++ECSVCHSKLVSP+ K+ISRAYDRHK+R+SSKQR LNVFLVVGDC+LVG Q ILV
Sbjct: 1   MKNGIMECSVCHSKLVSPSAKTISRAYDRHKSRISSKQRALNVFLVVGDCVLVGFQSILV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+TKV FAIVML  QARHQKVGEKPLLSISTF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPISVNFLTEITKVFFAIVMLLLQARHQKVGEKPLLSISTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIA+LLK+IM+RRFSIIQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIALLLKVIMKRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA+GLPV MGAYIYTLIF+TVPS+ASV+NEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGTTALGLPVTMGAYIYTLIFVTVPSLASVYNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T + KGP + DILQGHSKATMLLI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILGTVVVKGPSSFDILQGHSKATMLLIANNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360
           AD ILKKYSSTVATIFTGIASAVLFGHTLT+NF++GISIVFISMHQFFS LSK KDE QN
Sbjct: 301 ADTILKKYSSTVATIFTGIASAVLFGHTLTLNFVIGISIVFISMHQFFSPLSKVKDE-QN 359

Query: 361 GTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLPT 404
           G  EL DV +  RSKESFI++AAGANEEA HR+G DERQPLLP+
Sbjct: 360 GVLELHDVHDKQRSKESFINMAAGANEEATHRVGHDERQPLLPS 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478080|ref|XP_003632066.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Vitis vinifera] gi|297745192|emb|CBI39184.3| unnamed protein product [Vitis vinifera]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/405 (83%), Positives = 377/405 (93%), Gaps = 1/405 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNGMIECSVCHS+LVSP+ K++SRAYDRH++++SSK R LNVFLVVGDC+LVG QPILV
Sbjct: 1   MKNGMIECSVCHSRLVSPSAKTVSRAYDRHRSKISSKHRALNVFLVVGDCILVGFQPILV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           +MSKVDG+F+FSPISVNFLTE+ KVLFAIVML  QAR QKVGEKPLLS+STF+QAARNNV
Sbjct: 61  FMSKVDGKFEFSPISVNFLTEIAKVLFAIVMLLLQARRQKVGEKPLLSVSTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLK+IMRRRFS IQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKMIMRRRFSTIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQ+RSLPEG+TA+GLPVA GAY+YTLIF+TVPS+ASV+NEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQMRSLPEGTTALGLPVATGAYLYTLIFVTVPSLASVYNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGI+ TA+ KGP + DIL GHSKATMLLIFNNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGIVGTAVVKGPSSFDILHGHSKATMLLIFNNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360
           AD ILKKYSSTVATIFTGIASA +FGHTLT+NF+LGISIVFISMHQFFS LSK KDE+QN
Sbjct: 301 ADTILKKYSSTVATIFTGIASAAMFGHTLTINFILGISIVFISMHQFFSPLSKVKDEEQN 360

Query: 361 GTHELRDVQENHRSKE-SFIDIAAGANEEAAHRIGSDERQPLLPT 404
           G  E+ D+Q +HR K+ SFI++AAGANEEA+HR+GSDERQPLLPT
Sbjct: 361 GKLEVMDIQGDHRLKDSSFINMAAGANEEASHRVGSDERQPLLPT 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446225|ref|XP_004140872.1| PREDICTED: CMP-sialic acid transporter 2-like [Cucumis sativus]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/404 (86%), Positives = 370/404 (91%), Gaps = 2/404 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNGMIECSVCHSKLVSPTTK ISRAYDRHK RVSSKQR LN  LVVGDC+LVGLQPILV
Sbjct: 1   MKNGMIECSVCHSKLVSPTTKGISRAYDRHKIRVSSKQRALNTLLVVGDCILVGLQPILV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+ KV+FAIVML  QARHQKVGEKPLLSISTF+QAARNNV
Sbjct: 61  YMSKVDGKFMFSPISVNFLTEIAKVIFAIVMLILQARHQKVGEKPLLSISTFMQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPAFLYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK+IMRRRFSIIQWEALA
Sbjct: 121 LLAVPAFLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKVIMRRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+  +GL V MGAY+YTLIF+TVPS+ASV+NEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGAPNLGLTVTMGAYVYTLIFVTVPSLASVYNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNF+GIL T I KGP + DILQGHSKATMLLI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFMGILGTVIMKGPSSFDILQGHSKATMLLIANNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360
           AD ILKKYSSTVATIFTGIASA LFGHTLTMNF+LGISIVFISMHQFFS LSK KDE QN
Sbjct: 301 ADTILKKYSSTVATIFTGIASAALFGHTLTMNFVLGISIVFISMHQFFSPLSKVKDE-QN 359

Query: 361 GTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLPT 404
           G  E+ DV +N RSK SFI+IAAGAN+EA+H +GSDER+PLLPT
Sbjct: 360 GMTEMVDV-DNQRSKGSFINIAAGANDEASHLVGSDERKPLLPT 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445115|ref|XP_003592835.1| UDP-galactose transporter [Medicago truncatula] gi|355481883|gb|AES63086.1| UDP-galactose transporter [Medicago truncatula]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/427 (80%), Positives = 375/427 (87%), Gaps = 26/427 (6%)

Query: 3   NGMIECSVCHSKLVSPT-TKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVY 61
           NGMIECSVCHSKLVSP  TK++SRAYDRHK R++SKQRVLN+ LV GDCMLVG QPILVY
Sbjct: 7   NGMIECSVCHSKLVSPAATKTVSRAYDRHKNRITSKQRVLNILLVGGDCMLVGFQPILVY 66

Query: 62  MSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVL 121
           MSKVDG+F FSPISVNFLTE+TKV FAIVML  QAR+QKVG+KPLLSISTF+QAARNNVL
Sbjct: 67  MSKVDGKFNFSPISVNFLTEITKVFFAIVMLLLQARNQKVGDKPLLSISTFMQAARNNVL 126

Query: 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALAL 181
           LAVPAFLYAINNYLKF+MQLYFNPATVKMLSNLKVLVIA+LLK++M+RRFSIIQWEALAL
Sbjct: 127 LAVPAFLYAINNYLKFVMQLYFNPATVKMLSNLKVLVIALLLKVVMKRRFSIIQWEALAL 186

Query: 182 LLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSI-- 239
           LLIGISVNQLRSLPEG+TA+GLPV MGAY+YT IF+TVPSMASV+NEYALKSQYDTSI  
Sbjct: 187 LLIGISVNQLRSLPEGTTALGLPVTMGAYVYTFIFVTVPSMASVYNEYALKSQYDTSIYL 246

Query: 240 ----------------------YLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHS 277
                                 YLQNLFLYGYGA+FNFLGI+VTAIFKGP + DIL+GHS
Sbjct: 247 QVKYDTFNCFNIYIIDANSLFFYLQNLFLYGYGAMFNFLGIVVTAIFKGPSSFDILEGHS 306

Query: 278 KATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGI 337
           KATMLLI NNAAQGILS FF KYAD ILKKYSSTVATIFTGIASAVLFGH LTMNFL+GI
Sbjct: 307 KATMLLIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAVLFGHKLTMNFLIGI 366

Query: 338 SIVFISMHQFFSSLSKAKDEQQNGTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDE 397
           SIVFISMHQFFS LSK +DE QNG  EL DVQE  RSK+SF+++AAGANEEA+HR+G DE
Sbjct: 367 SIVFISMHQFFSPLSKVRDE-QNGALELHDVQEKQRSKDSFLNMAAGANEEASHRVGHDE 425

Query: 398 RQPLLPT 404
           RQPLLPT
Sbjct: 426 RQPLLPT 432

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577789|ref|XP_002529769.1| conserved hypothetical protein [Ricinus communis] gi|223530767|gb|EEF32635.1| conserved hypothetical protein [Ricinus communis]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/388 (87%), Positives = 363/388 (93%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNGMIECSVCHSKLVSP+ K++SRAYDRHK+RVSSK R LNVFLVVGDC+LVGLQPILV
Sbjct: 1   MKNGMIECSVCHSKLVSPSAKTVSRAYDRHKSRVSSKLRALNVFLVVGDCILVGLQPILV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSP+SVNFLTE  KVLFAIVML  QAR QKVGEKPLLSISTF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPVSVNFLTEAAKVLFAIVMLLLQARSQKVGEKPLLSISTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPAFLYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSI+QWEALA
Sbjct: 121 LLAVPAFLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSILQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA G+P+A  AY+YTL+F+TVPS+ASV+NEYALKSQY+TSIY
Sbjct: 181 LLLIGISVNQLRSLPEGATATGIPLATIAYVYTLVFVTVPSLASVYNEYALKSQYETSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T I KGP + DILQGHSKATMLLI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILATVIVKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360
           AD ILKKYSSTVATIFTGIASA LFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN
Sbjct: 301 ADTILKKYSSTVATIFTGIASAALFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQN 360

Query: 361 GTHELRDVQENHRSKESFIDIAAGANEE 388
           GT EL DVQ++HRSK+SFI++AAGANEE
Sbjct: 361 GTVELMDVQDDHRSKDSFINMAAGANEE 388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820766|ref|XP_002878266.1| UDP-galactose transporter 6 [Arabidopsis lyrata subsp. lyrata] gi|297324104|gb|EFH54525.1| UDP-galactose transporter 6 [Arabidopsis lyrata subsp. lyrata]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/404 (82%), Positives = 368/404 (91%), Gaps = 1/404 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNG+ ECSVCHSKLVSP +K+ISRAYD HK RVSSKQRVLNV LVVGDCMLVGLQP+LV
Sbjct: 1   MKNGIAECSVCHSKLVSPGSKTISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+ KV+FAIVML  QARHQKVGEKPLLS+STF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK++M+RRFSIIQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA+G+P+A GAY+ T+IF+TVPSMASVFNEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDE-QQ 359
           AD ILKKYSSTVATIFTGIASA LFGH +TMNFLLGISIVFISMHQFFS L+K +DE QQ
Sbjct: 301 ADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKVRDEQQQ 360

Query: 360 NGTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLP 403
           NG  EL + ++ HR+ +SFI++AAGANEEA+HR  SD+R PLLP
Sbjct: 361 NGNLELVNAKDTHRANDSFINMAAGANEEASHRGESDDRTPLLP 404

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411150|ref|NP_567083.1| UDP-galactose transporter 6 [Arabidopsis thaliana] gi|30694978|ref|NP_850721.1| UDP-galactose transporter 6 [Arabidopsis thaliana] gi|75168953|sp|Q9C5H6.1|CSTR3_ARATH RecName: Full=CMP-sialic acid transporter 3; Short=CMP-SA-Tr 3; Short=CMP-Sia-Tr 3; AltName: Full=UDP-galactose/UDP-glucose transporter 6; Short=AtUTr6 gi|13430658|gb|AAK25951.1|AF360241_1 putative transporter protein [Arabidopsis thaliana] gi|14532830|gb|AAK64097.1| putative transporter protein [Arabidopsis thaliana] gi|332646390|gb|AEE79911.1| UDP-galactose transporter 6 [Arabidopsis thaliana] gi|332646391|gb|AEE79912.1| UDP-galactose transporter 6 [Arabidopsis thaliana]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/404 (82%), Positives = 367/404 (90%), Gaps = 1/404 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
           MKNG+ EC  CHSKLVSP +K+ISRAYD HK RVSSKQRVLNV LVVGDCMLVGLQP+LV
Sbjct: 1   MKNGIAECPACHSKLVSPGSKTISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLV 60

Query: 61  YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
           YMSKVDG+F FSPISVNFLTE+ KV+FAIVML  QARHQKVGEKPLLS+STF+QAARNNV
Sbjct: 61  YMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNV 120

Query: 121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA 180
           LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK++M+RRFSIIQWEALA
Sbjct: 121 LLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALA 180

Query: 181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
           LLLIGISVNQLRSLPEG+TA+G+P+A GAY+ T+IF+TVPSMASVFNEYALKSQYDTSIY
Sbjct: 181 LLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIY 240

Query: 241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
           LQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF KY
Sbjct: 241 LQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFKY 300

Query: 301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDE-QQ 359
           AD ILKKYSSTVATIFTGIASA LFGH +TMNFLLGISIVFISMHQFFS L+KA+DE QQ
Sbjct: 301 ADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKARDEQQQ 360

Query: 360 NGTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLP 403
           NG  EL + ++ HR+ ESFI++AAGANEEA+HR  SD+R PLLP
Sbjct: 361 NGNLELGNTKDTHRANESFINMAAGANEEASHRGESDDRTPLLP 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145360939|ref|NP_181853.3| nucleotide-sugar transporter [Arabidopsis thaliana] gi|75151390|sp|Q8GY97.1|CSTR2_ARATH RecName: Full=CMP-sialic acid transporter 2; Short=CMP-SA-Tr 2; Short=CMP-Sia-Tr 2 gi|26450627|dbj|BAC42425.1| unknown protein [Arabidopsis thaliana] gi|51971655|dbj|BAD44492.1| unnamed protein product [Arabidopsis thaliana] gi|330255141|gb|AEC10235.1| nucleotide-sugar transporter [Arabidopsis thaliana]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/405 (82%), Positives = 368/405 (90%), Gaps = 2/405 (0%)

Query: 1   MKNGMIECSVCHSKLVSPTTKSISRAYDRH--KTRVSSKQRVLNVFLVVGDCMLVGLQPI 58
           MKNGM ECSVC S+LVSP++K+ISRAYD +  K RVSSKQR LNVFLVVGDCMLVGLQP+
Sbjct: 1   MKNGMAECSVCRSRLVSPSSKAISRAYDNYNYKIRVSSKQRALNVFLVVGDCMLVGLQPV 60

Query: 59  LVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARN 118
           LVYMSKVDG+F FSPISVNFLTE+ KV+FA+VML FQARHQKVGEKPLLS+STF+QAARN
Sbjct: 61  LVYMSKVDGKFNFSPISVNFLTEIAKVIFAMVMLLFQARHQKVGEKPLLSLSTFVQAARN 120

Query: 119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEA 178
           N+LLAVPA LYAINNYLKF MQLYFNPATVKMLSNLKVLVIAVLLK+IM+RRFSIIQWEA
Sbjct: 121 NMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMIMKRRFSIIQWEA 180

Query: 179 LALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTS 238
           LALLLIGIS+NQLRSLPEG+T + +P+A GAYI T IF+TVPS+ASV+NEYALKSQYDTS
Sbjct: 181 LALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSLASVYNEYALKSQYDTS 240

Query: 239 IYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFL 298
           IYLQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF 
Sbjct: 241 IYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFF 300

Query: 299 KYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQ 358
           KYAD ILKKYSSTVATIFTGIASA LFGH LTMNFLLGISIVFISMHQFFS LSKAKDEQ
Sbjct: 301 KYADTILKKYSSTVATIFTGIASAALFGHILTMNFLLGISIVFISMHQFFSPLSKAKDEQ 360

Query: 359 QNGTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLP 403
           QNG  EL D ++ HR+K+SFI++AAGA EEA+HRI SD+R PLLP
Sbjct: 361 QNGNIELVDAKDGHRAKDSFINMAAGATEEASHRIESDDRVPLLP 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547474|ref|XP_002514794.1| UDP-galactose/UDP-N-acetylglucosamine transporter, putative [Ricinus communis] gi|223545845|gb|EEF47348.1| UDP-galactose/UDP-N-acetylglucosamine transporter, putative [Ricinus communis]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/400 (82%), Positives = 362/400 (90%), Gaps = 2/400 (0%)

Query: 5   MIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSK 64
           MIECSVCHSK +SPT+K++SRAYDRH++ VSSK R LN+ LVVGDC+LVGLQPILVYMSK
Sbjct: 1   MIECSVCHSK-ISPTSKTVSRAYDRHRSDVSSKTRALNILLVVGDCILVGLQPILVYMSK 59

Query: 65  VDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAV 124
           VDG+FKFSPISVNFLTE  KVLFAI+ML  QARH+K G+KP LS+STF+QAARNNVLLAV
Sbjct: 60  VDGQFKFSPISVNFLTEAAKVLFAILMLCIQARHKKTGDKPPLSVSTFVQAARNNVLLAV 119

Query: 125 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLI 184
           PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIM+RRFSIIQWEALALLLI
Sbjct: 120 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMKRRFSIIQWEALALLLI 179

Query: 185 GISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNL 244
           GISVNQLRSLP G+TAMGLPVA GAY+YTLIF TVPS+ASV+NEYALKSQ+DTSIYLQNL
Sbjct: 180 GISVNQLRSLPGGTTAMGLPVATGAYLYTLIFATVPSLASVYNEYALKSQFDTSIYLQNL 239

Query: 245 FLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAI 304
           FLYGYGAIFNFL ILVTAIFKGP +LDILQGHSKATMLLI NNAAQGILS FF KYAD I
Sbjct: 240 FLYGYGAIFNFLAILVTAIFKGPSSLDILQGHSKATMLLICNNAAQGILSSFFFKYADTI 299

Query: 305 LKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQNGTHE 364
           LKKYSSTVATIFTGIASA LFGHTLTMNF+LGISIVFISMHQFFS LSK KDE  NG  +
Sbjct: 300 LKKYSSTVATIFTGIASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPPNGGVQ 359

Query: 365 LRDVQENHRSKE-SFIDIAAGANEEAAHRIGSDERQPLLP 403
           + D + N RSK+ +FI++ AGANE+A H +  DE+ PLLP
Sbjct: 360 MMDGKNNQRSKDAAFINMTAGANEDANHLVEHDEKAPLLP 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
TAIR|locus:2081292	405	UTR6 "UDP-galactose transporte	0.997	0.995	0.799	2.5e-168
TAIR|locus:2040976	406	AT2G43240 [Arabidopsis thalian	0.997	0.992	0.795	8.5e-168
TAIR|locus:2152955	340	AT5G41760 [Arabidopsis thalian	0.740	0.879	0.287	4.6e-34
TAIR|locus:504955503	352	AT4G35335 [Arabidopsis thalian	0.705	0.809	0.284	2.7e-29
UNIPROTKB|F1NDA7	299	SLC35A4 "Uncharacterized prote	0.710	0.959	0.270	5.2e-26
UNIPROTKB|Q96G79	324	SLC35A4 "Probable UDP-sugar tr	0.735	0.916	0.279	2.9e-23
UNIPROTKB|Q8MIA3	324	SLC35A4 "Probable UDP-sugar tr	0.685	0.854	0.297	3.1e-22
ZFIN|ZDB-GENE-061103-595	314	slc35a4 "solute carrier family	0.772	0.993	0.246	7.1e-22
UNIPROTKB|F1NTH1	432	SLC35A5 "Uncharacterized prote	0.373	0.349	0.256	1.6e-21
RGD|628792	324	Slc35a4 "solute carrier family	0.735	0.916	0.279	6.3e-21

TAIR|locus:2081292 UTR6 "UDP-galactose transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1637 (581.3 bits), Expect = 2.5e-168, P = 2.5e-168
 Identities = 323/404 (79%), Positives = 354/404 (87%)

Query:     1 MKNGMIECSVCHSKLVSPTTKSISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILV 60
             MKNG+ EC  CHSKLVSP +K+ISRAYD HK RVSSKQRVLNV LVVGDCMLVGLQP+LV
Sbjct:     1 MKNGIAECPACHSKLVSPGSKTISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLV 60

Query:    61 YMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNV 120
             YMSKVDG+F FSPISVNFLTE+ KV+FAIVML  QARHQKVGEKPLLS+STF+QAARNNV
Sbjct:    61 YMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNV 120

Query:   121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXXXXXMRRRFSIIQWEALA 180
             LLAVPA LYAINNYLKF MQLYFNPATVKMLSN             M+RRFSIIQWEALA
Sbjct:   121 LLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALA 180

Query:   181 LLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIY 240
             LLLIGISVNQLRSLPEG+TA+G+P+A GAY+ T+IF+TVPSMASVFNEYALKSQYDTSIY
Sbjct:   181 LLLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIY 240

Query:   241 LQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKY 300
             LQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF KY
Sbjct:   241 LQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFKY 300

Query:   301 ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQQ- 359
             AD ILKKYSSTVATIFTGIASA LFGH +TMNFLLGISIVFISMHQFFS L+KA+DEQQ 
Sbjct:   301 ADTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKARDEQQQ 360

Query:   360 NGTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLP 403
             NG  EL + ++ HR+ ESFI++AAGANEEA+HR  SD+R PLLP
Sbjct:   361 NGNLELGNTKDTHRANESFINMAAGANEEASHRGESDDRTPLLP 404

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2040976 AT2G43240 [Arabidopsis thaliana (taxid:3702)]

 Score = 1632 (579.6 bits), Expect = 8.5e-168, P = 8.5e-168
 Identities = 322/405 (79%), Positives = 355/405 (87%)

Query:     1 MKNGMIECSVCHSKLVSPTTKSISRAYDRH--KTRVSSKQRVLNVFLVVGDCMLVGLQPI 58
             MKNGM ECSVC S+LVSP++K+ISRAYD +  K RVSSKQR LNVFLVVGDCMLVGLQP+
Sbjct:     1 MKNGMAECSVCRSRLVSPSSKAISRAYDNYNYKIRVSSKQRALNVFLVVGDCMLVGLQPV 60

Query:    59 LVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARN 118
             LVYMSKVDG+F FSPISVNFLTE+ KV+FA+VML FQARHQKVGEKPLLS+STF+QAARN
Sbjct:    61 LVYMSKVDGKFNFSPISVNFLTEIAKVIFAMVMLLFQARHQKVGEKPLLSLSTFVQAARN 120

Query:   119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXXXXXMRRRFSIIQWEA 178
             N+LLAVPA LYAINNYLKF MQLYFNPATVKMLSN             M+RRFSIIQWEA
Sbjct:   121 NMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMIMKRRFSIIQWEA 180

Query:   179 LALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTS 238
             LALLLIGIS+NQLRSLPEG+T + +P+A GAYI T IF+TVPS+ASV+NEYALKSQYDTS
Sbjct:   181 LALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSLASVYNEYALKSQYDTS 240

Query:   239 IYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFL 298
             IYLQNLFLYGYGAIFNFLGIL T I+KGP + DILQGHS+ATM LI NNAAQGILS FF 
Sbjct:   241 IYLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFF 300

Query:   299 KYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAKDEQ 358
             KYAD ILKKYSSTVATIFTGIASA LFGH LTMNFLLGISIVFISMHQFFS LSKAKDEQ
Sbjct:   301 KYADTILKKYSSTVATIFTGIASAALFGHILTMNFLLGISIVFISMHQFFSPLSKAKDEQ 360

Query:   359 QNGTHELRDVQENHRSKESFIDIAAGANEEAAHRIGSDERQPLLP 403
             QNG  EL D ++ HR+K+SFI++AAGA EEA+HRI SD+R PLLP
Sbjct:   361 QNGNIELVDAKDGHRAKDSFINMAAGATEEASHRIESDDRVPLLP 405

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

TAIR|locus:2152955 AT5G41760 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 89/310 (28%), Positives = 162/310 (52%)

Query:    44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGE 103
             F+ V   +L   Q IL  +S+ DG +K+   +V FL E+ K++ + + L+   R  +   
Sbjct:     8 FVAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLW---REMRTSS 64

Query:   104 KPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXX 163
                  I+T  ++ R   L  +P+ +Y I+N ++F    Y + +T +++ N          
Sbjct:    65 STTSRITTDWKSVR---LFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILF 121

Query:   164 XXXMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMA 223
                ++R+ S +QW A+ LL +G + +Q++   E S        +  Y+  ++   + ++A
Sbjct:   122 RLFLKRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALA 181

Query:   224 SVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAI---F-KGPDNLDILQGHSKA 279
              ++ E+ +K   DT +Y QNL LY +G++FN   ++       F KGP    I  G+S  
Sbjct:   182 GIYTEFLMKRNNDT-LYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSIT 240

Query:   280 TMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISI 339
             T L++ N  + G+L  + +KYAD I+K YS+++A + T +AS  LF    T+   LGI I
Sbjct:   241 TWLVVLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVI 300

Query:   340 VFISMHQFFS 349
               +S+H +F+
Sbjct:   301 CIMSLHMYFA 310

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS;IDA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:504955503 AT4G35335 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 84/295 (28%), Positives = 144/295 (48%)

Query:    51 MLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSIS 110
             +L   Q IL+  SK  G++++S  + NFL    K   +++ L    +++ V +   LS +
Sbjct:    60 ILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS-T 118

Query:   111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXXXXXMRRR 170
             TF +      +  +PA LY   N L++ +  Y +    ++L N             ++R+
Sbjct:   119 TFDEVK----VFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRK 174

Query:   171 FSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYA 230
              S IQW    LL  G +  QL S  +      LP     +   ++   +   A V+ E  
Sbjct:   175 LSEIQWAGFILLCCGCTTAQLNSNSDRVLQTSLP----GWTMAIVMALLSGFAGVYTEAI 230

Query:   231 LKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQ 290
             +K +   +I +QN +LY +G  FN + I++   F    N     G+S  T+L+I N+A  
Sbjct:   231 IKKRPSRNINVQNFWLYVFGMAFNAVAIVIQD-FDAVANKGFFHGYSFITLLMILNHALS 289

Query:   291 GILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMH 345
             GI     +KYAD I+K YS++VA + T + S  LF   L++ F LG ++V +S++
Sbjct:   290 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVY 344

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|F1NDA7 SLC35A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 84/310 (27%), Positives = 157/310 (50%)

Query:    45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEK 104
             +++    + G    L+ + KVDG   FS  SV  L E+TK++ +++ L    R Q +G  
Sbjct:     4 MLLSSVAIYGSHAPLLTLCKVDGTIPFSSSSVVVLIELTKLVLSLLFLLTWDR-QLLGA- 61

Query:   105 PLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXXX 164
                ++S    A       A+ A LYA NN L   MQL+ +P+T ++LSN           
Sbjct:    62 ---AVSWHHVAP-----FALSALLYAANNNLVVHMQLFMDPSTYQILSNLKIVSTALLYS 113

Query:   165 XXMRRRFSIIQWEALALLLI-GISVN--QLRSLPEGS---TAMGLPVAMGAYIYTLIFIT 218
               +R+R  + QW AL LL+  G+S +   LR  P GS   +AM L + +   +   ++  
Sbjct:   114 LFLRQRLRVRQWLALCLLMAAGVSYSCGGLRD-PRGSGSPSAMQLHITLVGLLLISVYCL 172

Query:   219 VPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSK 278
             +  +++V+ E  LK+Q    + LQN+FLY +G + N +G   ++  +G      L+G S 
Sbjct:   173 ISGLSAVYTEAILKTQA-LPLNLQNIFLYFFGVLVNLVGHFWSSTERG-----FLEGFSF 226

Query:   279 ATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGIS 338
               ++++ + A  G++    +K++  I + +  + + +   + S  LF   LT+ F + +S
Sbjct:   227 WVLVIVVSQALNGLIMSVVMKHSSNITRLFVISCSILVNALLSVALFNLQLTLLFFIAVS 286

Query:   339 IVFISMHQFF 348
              + +++H ++
Sbjct:   287 CIGLAVHLYY 296

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96G79 SLC35A4 "Probable UDP-sugar transporter protein SLC35A4" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 91/326 (27%), Positives = 149/326 (45%)

Query:    37 KQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQA 96
             +Q    + L++   M     P+L  +  VDGR  F P S   LTE+TK+L     L    
Sbjct:    15 RQARWTLMLLLSTAMYGAHAPLLA-LCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGW 73

Query:    97 RHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXX 156
             +    G  P      + QAA      A+ A LY  NN L   +Q Y +P+T ++LSN   
Sbjct:    74 QAWPQGPPP------WRQAAP----FALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKI 123

Query:   157 XXXXXXXXXXMRRRFSIIQWEALALLLI--------GISV--NQLRSLPEGSTAMGLPVA 206
                       +R R S+ Q  AL LL+         G+ V  N L S P  + A  +P+ 
Sbjct:   124 GSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLH 183

Query:   207 MG--AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIF 264
             +     +  +++  +  ++SV+ E  +K Q    + LQNLFLY +G + N LG+      
Sbjct:   184 ITPLGLLLLILYCLISGLSSVYTELLMKRQR-LPLALQNLFLYTFGVLLN-LGLHAGG-G 240

Query:   265 KGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL 324
              GP    +L+G S    L++ + A  G+L    +K+  +I + +  + + +   + SAVL
Sbjct:   241 SGPG---LLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVL 297

Query:   325 FGHTLTMNFLLGISIVFISMHQFFSS 350
                 LT  F L   ++ ++M  ++ S
Sbjct:   298 LRLQLTAAFFLATLLIGLAMRLYYGS 323

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8MIA3 SLC35A4 "Probable UDP-sugar transporter protein SLC35A4" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 91/306 (29%), Positives = 141/306 (46%)

Query:    57 PILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAA 116
             P+L  +  VDGR  F P S   LTE+TK+L   + L    +       P      + QAA
Sbjct:    35 PLLA-LCHVDGRVPFRPSSAVLLTELTKLLLCALSLLVGWQAWPPRTPP------WRQAA 87

Query:   117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXXXXXXXXXXXXMRRRFSIIQW 176
                   A+ A LY  NN L   +Q Y +P+T ++LSN             +RRR S  Q 
Sbjct:    88 P----FALSALLYGANNNLVIHLQHYMDPSTYQVLSNLKIGSTALFYCLCLRRRLSARQG 143

Query:   177 EALALLLIG---ISVNQLRS----LPEG-STAMGLPVAMGA----YIYTLIFITVPSMAS 224
              AL LL+      +   LR     LPE  STA   PV +       +  L++  +  ++S
Sbjct:   144 LALLLLMAAGACYAAGGLRDPGSPLPESPSTAASGPVPLHVTAPGLLLLLLYCLISGLSS 203

Query:   225 VFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI 284
             V+ E  LK Q    + LQNLFLY +G + N LG+       GP    +L+G S    L++
Sbjct:   204 VYTELLLKRQR-LPLALQNLFLYTFGVLLN-LGLHAGG---GPGP-GLLEGFSGWAALVV 257

Query:   285 FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISM 344
              + A  G+L    +K+  +I + +  + + +   + SA L    LT  F L   ++ +++
Sbjct:   258 LSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAALLRLQLTAAFFLAALLIGLAV 317

Query:   345 HQFFSS 350
             H ++ S
Sbjct:   318 HLYYGS 323

GO:0016021 "integral to membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

ZFIN|ZDB-GENE-061103-595 slc35a4 "solute carrier family 35, member A4" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 7.1e-22, P = 7.1e-22
 Identities = 81/328 (24%), Positives = 144/328 (43%)

Query:    23 ISRAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEM 82
             I+ + D      S   R+  +FL++   ++ G    L+ + K   +  FS  S   L E 
Sbjct:     2 IAISADESPESSSPALRLRWLFLLLLLVLIYGSHAPLLSLCKTQAQIPFSASSCVLLIET 61

Query:    83 TKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLY 142
             +K+  +   L         G    L IS  +  A      AVPA LYA NN+L   MQ Y
Sbjct:    62 SKLFISFASLLAS------GSVSTLRISISMTTASP---YAVPAVLYAFNNHLVVFMQAY 112

Query:   143 FNPATVKMLSNXXXXXXXXXXXXXMRRRFSIIQWEALALLL-IGISVNQLRSLPEGSTAM 201
              +P++ ++LSN             + +R    QW A+ LL+  G+S +      EG    
Sbjct:   113 MDPSSFQVLSNLKIASTALLYTSCLGKRLHRRQWFAMGLLVSAGVSHSCFSYDLEGKQET 172

Query:   202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT 261
              + +     +  L++  V  +A+V+ E  LKSQ    + +QNLFLY +G + N    L  
Sbjct:   173 AVYITSWGLLLVLVYCFVSGLAAVYTERVLKSQR-LPLSMQNLFLYAFGVVVNLASHL-- 229

Query:   262 AIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIAS 321
                 G +     +G+S    +++    A G+L    +K+   I + +  + A +   + S
Sbjct:   230 ---SGGEQKGFFEGYSAVVWVIVAGQVANGLLMSVVMKHGTGITRLFVISSAMLVNAVLS 286

Query:   322 AVLFGHTLTMNFLLGISIVFISMHQFFS 349
               + G  LT  FL  + ++  +++ +++
Sbjct:   287 WGILGVQLTGYFLFPVVLIGWAVYLYYT 314

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1NTH1 SLC35A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 41/160 (25%), Positives = 79/160 (49%)

Query:    31 KTRVSSKQRVLNVFLVVGDCMLVGLQPILV--YMSKVDGRFKFSPISVNFLTEMTKVLFA 88
             ++ V SK  +   FL+ G  + +G   IL+  Y +  D ++ + P +VN  +E+ K+   
Sbjct:     9 RSAVCSKTTIYT-FLLGGVFITLGSSRILLMKYSANEDNKYDYLPTTVNICSEVVKLFLC 67

Query:    89 IVMLFFQARHQKVGEKP--LLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPA 146
             +V+  +  + +   ++P   LS   F     N++  ++PAFLY ++N + F +  Y  PA
Sbjct:    68 VVLALWVKKKEGCLDRPSGCLSWKNFC----NSMKWSIPAFLYFLDNLIVFYVLSYLQPA 123

Query:   147 TVKMLSNXXXXXXXXXXXXXMRRRFSIIQWEALALLLIGI 186
                + SN             ++R+ S +QW +L +L + I
Sbjct:   124 MAVLFSNFVIITTALLFRIVLKRKLSWVQWASLVILFLSI 163

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|628792 Slc35a4 "solute carrier family 35, member A4" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 91/326 (27%), Positives = 142/326 (43%)

Query:    37 KQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQA 96
             KQ    + L +   M     P L  +  VDGR  F P S   LTE+TK+L     L    
Sbjct:    15 KQARWTLMLFLSTAMYGAHAPFLA-LCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGW 73

Query:    97 RHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNXXX 156
             +    G  P      + QAA      A+ A LY  NN L   +Q Y +P+T ++LSN   
Sbjct:    74 QTWPQGTPP------WRQAAP----FALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKI 123

Query:   157 XXXXXXXXXXMRRRFSIIQWEALALLLIGISVNQLRSLPE-GSTAMGLPVAMGA------ 209
                       +  R S  Q  AL LL+   +        E G+T  G   A GA      
Sbjct:   124 GSTALLYCLCLGHRLSARQGLALLLLMAAGACYASGGFQEPGNTLPGPRSAAGARPMPLH 183

Query:   210 -----YIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIF 264
                   +  +++  +  ++SV+ E  +K Q    + LQNLFLY +G I N LG+   +  
Sbjct:   184 ITPLGLLLLILYCLISGLSSVYTELIMKRQR-LPLALQNLFLYTFGVILN-LGLYAGS-- 239

Query:   265 KGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL 324
              GP     L+G S   +L++ N A  G+L    +K+  +I + +  + + +   + SAVL
Sbjct:   240 -GPGP-GFLEGFSGWAVLVVLNQAVNGLLMSAVMKHGSSITRLFIVSCSLVVNAVLSAVL 297

Query:   325 FGHTLTMNFLLGISIVFISMHQFFSS 350
                 LT  F L   ++ +++  ++ S
Sbjct:   298 LQLQLTATFFLAALLIGLAVCLYYGS 323

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GY97	CSTR2_ARATH	No assigned EC number	0.8246	0.9975	0.9926	no	no
Q9C5H6	CSTR3_ARATH	No assigned EC number	0.8267	0.9975	0.9950	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	404
pfam04142	238	pfam04142, Nuc_sug_transp, Nucleotide-sugar transp	3e-34
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	1e-13

>gnl|CDD|217924 pfam04142, Nuc_sug_transp, Nucleotide-sugar transporter

 Score =  127 bits (320), Expect = 3e-34
 Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 16/238 (6%)

Query: 111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRR 170
                  + + +AVPAF+Y + N L ++     + AT ++   LK+L  A+   +++ R+
Sbjct: 9   AIFNNPSDTLKVAVPAFIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVLMLGRK 68

Query: 171 FSIIQWEALALLLIGISVNQLRSL-PEGSTAMGLPVAMGAYIYTLIFITV----PSMASV 225
            S  QW +L LL +G+++ QL     E ++  G           L  +         A V
Sbjct: 69  LSWYQWASLLLLFLGVAIVQLDQKSSETNSKRGAE---QNPGLGLSAVLAACFTSGFAGV 125

Query: 226 FNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT---AIFKGPDNLDILQGHSKATML 282
           + E  LK   +TSI+++N+ LY +G  F  L   +    AI +         G++     
Sbjct: 126 YFEKILKGS-NTSIWIRNIQLYFFGIFFALLTCWLYDGSAISEK----GFFFGYTAFVWA 180

Query: 283 LIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV 340
           ++   A  G++    +KYAD ILK +++++A I + +AS +LF    T+ FLLG  +V
Sbjct: 181 VVLLQAVGGLVVAVVVKYADNILKGFATSLAIILSTVASVLLFDFRPTLTFLLGAILV 238

This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid, SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc. Length = 238

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALAL 181
           L+VP  +    N L  I  L    A  K ++ LK+L  A++    +       QW +L L
Sbjct: 2   LSVPIHIIFKQNNLVLIA-LGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKL 60

Query: 182 LLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYL 241
           L +G+++ Q+      +   G PV   + + + +  +    A V+ E  LK   DT  + 
Sbjct: 61  LKLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSG--FAGVYFEKILKD-GDTMFWS 117

Query: 242 QNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYA 301
           +NL L  +G    F  +L +       N     G+  A  ++   N   G+     ++YA
Sbjct: 118 RNLQLPLFGLFSTFSVLLWSD-GTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGVVRYA 176

Query: 302 DAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFIS 343
           D   K + + ++ I + +AS  LF   ++  F LG  +VF++
Sbjct: 177 DNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLA 218

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	404
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	100.0
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	100.0
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.94
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.93
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.92
KOG1581	327	consensus UDP-galactose transporter related protei	99.91
PLN00411	358	nodulin MtN21 family protein; Provisional	99.89
PRK15430	296	putative chloramphenical resistance permease RarD;	99.86
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.86
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.84
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.84
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.83
PRK11272	292	putative DMT superfamily transporter inner membran	99.82
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.79
PRK11689	295	aromatic amino acid exporter; Provisional	99.76
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.76
KOG1580	337	consensus UDP-galactose transporter related protei	99.75
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.73
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.69
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.63
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.52
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.5
KOG1582	367	consensus UDP-galactose transporter related protei	99.45
COG2962	293	RarD Predicted permeases [General function predict	99.42
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.41
KOG2765	416	consensus Predicted membrane protein [Function unk	99.33
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.32
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.31
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.25
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.19
KOG2766	336	consensus Predicted membrane protein [Function unk	99.13
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.91
COG2510	140	Predicted membrane protein [Function unknown]	98.71
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.71
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.67
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.58
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.55
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.51
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.5
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.41
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.29
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.16
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.16
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.14
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.1
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.02
COG2510	140	Predicted membrane protein [Function unknown]	97.92
PLN00411	358	nodulin MtN21 family protein; Provisional	97.83
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.77
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.77
PRK11689	295	aromatic amino acid exporter; Provisional	97.77
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.73
PRK11272	292	putative DMT superfamily transporter inner membran	97.7
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.67
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.6
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.59
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.59
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.55
PRK11431	105	multidrug efflux system protein; Provisional	97.49
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.45
COG2076	106	EmrE Membrane transporters of cations and cationic	97.44
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.33
PRK15430	296	putative chloramphenical resistance permease RarD;	97.16
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.16
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.13
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.08
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.0
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.0
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.98
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.9
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.84
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.83
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.68
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.56
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.51
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.5
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.37
COG2076	106	EmrE Membrane transporters of cations and cationic	96.3
PRK13499	345	rhamnose-proton symporter; Provisional	96.28
PRK11431	105	multidrug efflux system protein; Provisional	96.26
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	95.78
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	95.5
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	95.25
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.07
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	94.9
COG2962	293	RarD Predicted permeases [General function predict	94.4
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.33
KOG1580	337	consensus UDP-galactose transporter related protei	94.3
PRK13499	345	rhamnose-proton symporter; Provisional	94.3
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	93.91
KOG1581	327	consensus UDP-galactose transporter related protei	93.84
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	91.79
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	90.58
KOG2922	335	consensus Uncharacterized conserved protein [Funct	88.52
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	86.65
KOG4510	346	consensus Permease of the drug/metabolite transpor	84.24
KOG4831	125	consensus Unnamed protein [Function unknown]	83.23

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.7e-58  Score=444.55  Aligned_cols=324  Identities=30%  Similarity=0.470  Sum_probs=269.3

Q ss_pred             hhhccCCcccchhhHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 015564           25 RAYDRHKTRVSSKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEK  104 (404)
Q Consensus        25 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~  104 (404)
                      |++|+|....+.++ ...+.++..++ +.+.+++++|+++.+++.+|.|+++||++|++|+++|..+++++.+..  .++
T Consensus         1 ~~~~~~~~~~~~~~-~k~~~l~~~t~-~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~--~~~   76 (345)
T KOG2234|consen    1 MAVKSMPIISSLSQ-MKYLSLIVLTA-QNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKY--AKK   76 (345)
T ss_pred             CCcccccccccHHH-HHHHHHHHHHH-HHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHH--hhh
Confidence            45666666666665 33344444444 555566677777765588899999999999999999999999986441  112


Q ss_pred             CcchH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 015564          105 PLLSI-STFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLL  183 (404)
Q Consensus       105 ~~~~~-~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~  183 (404)
                      +...+ +.++..+|+++++++||++|++|||++|++++|+|++|||+++|+|+++||+|++++|+||++++||.|+++++
T Consensus        77 ~~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~  156 (345)
T KOG2234|consen   77 SLKSLSKEILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLF  156 (345)
T ss_pred             hhhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            22222 34556678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCCCCCC--CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015564          184 IGISVNQLRSLPEGSTA--MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT  261 (404)
Q Consensus       184 ~Gv~lv~~~~~~~~~~~--~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~  261 (404)
                      +|++++|.+...+.+..  ........|..+++.+|++||+||+|+||++|+. +.|.|+||+|||++|+++++..+...
T Consensus       157 ~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~NiqL~~~g~~f~~l~~~~~  235 (345)
T KOG2234|consen  157 AGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRNIQLYFFGILFNLLTILLQ  235 (345)
T ss_pred             HHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999995443221111  1122345799999999999999999999999986 68999999999999999999887653


Q ss_pred             HHhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 015564          262 AIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVF  341 (404)
Q Consensus       262 ~~~~g~~~~~~f~g~~~~~~~~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi  341 (404)
                      ...++. +.|+|+||++.+|++++++|+||+++++++||+|||.|+|++++++++++++|+.+||.+||..+++|+.+|+
T Consensus       236 d~~~i~-~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi  314 (345)
T KOG2234|consen  236 DGEAIN-EYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVI  314 (345)
T ss_pred             cccccc-cCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence            222222 5789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccccc
Q 015564          342 ISMHQFFSSLSKA  354 (404)
Q Consensus       342 ~gv~ly~~~~~~~  354 (404)
                      .++++|+.++.+.
T Consensus       315 ~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  315 LSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHhhcCCccc
Confidence            9999999765544

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=100.00  E-value=6.8e-44  Score=338.55  Aligned_cols=228  Identities=33%  Similarity=0.559  Sum_probs=201.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564          111 TFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (404)
Q Consensus       111 ~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~  190 (404)
                      +.++.+|+.+++++||++|++||++.|++++++||++||+++|+|+++||++++++||||++++||+|++++++|+++++
T Consensus         9 ~~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~   88 (244)
T PF04142_consen    9 EVWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQ   88 (244)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheee
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCCC--CCC------CccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 015564          191 LRSLPEGST--AMG------LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTA  262 (404)
Q Consensus       191 ~~~~~~~~~--~~~------~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~  262 (404)
                      .++....+.  ...      ......|++++++++++||+++||+||++|++ +.|+|.||+|+|++|++++++......
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~~~~  167 (244)
T PF04142_consen   89 LSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALLLSD  167 (244)
T ss_pred             cCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            876433111  111      12245799999999999999999999999997 589999999999999999987754311


Q ss_pred             HhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 015564          263 IFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV  340 (404)
Q Consensus       263 ~~~g~~~~~~f~g~~~~~~~~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lV  340 (404)
                       .+...+.++|+||++++|.+++.+++||+++++++||+|||.|+|++++++++++++|+++||.++|..+++|..+|
T Consensus       168 -~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  168 -GSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             -ccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence             11223457999999999999999999999999999999999999999999999999999999999999999998765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00803 nst UDP-galactose transporter

Probab=99.94  E-value=6.8e-26  Score=212.44  Aligned_cols=218  Identities=23%  Similarity=0.314  Sum_probs=189.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 015564          122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM  201 (404)
Q Consensus       122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~  201 (404)
                      +++|+..|+.+|++.++++.+.++...+.. |.|++.++++++..++++++..||.++.++..|+..++.++..+..  .
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~--~   78 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKT--L   78 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccc--c
Confidence            578999999999999999999999999999 9999999999999999999999999999999999988765432111  1


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccccccCChH
Q 015564          202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGP---DNLDILQGHSK  278 (404)
Q Consensus       202 ~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~---~~~~~f~g~~~  278 (404)
                      .......|..+.+.++++++++++|.|+..|++ +.++|.+|+++++++.+.+......    .+.   ...+++++++.
T Consensus        79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  153 (222)
T TIGR00803        79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG-DTMFWSRNLQLPLFGLFSTFSVLLW----SDGTLISNFGFFIGYPT  153 (222)
T ss_pred             ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC-CCchHHHHHHHHHHHHHHHHHHHhh----cccchhhccCcccCCch
Confidence            112335688888889999999999999998875 5789999999999998876544332    221   13457889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564          279 ATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (404)
Q Consensus       279 ~~~~~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly  347 (404)
                      ..|..++.++++|+++++++||+|+++|+++++++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus       154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999887

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.93  E-value=2e-23  Score=204.81  Aligned_cols=265  Identities=18%  Similarity=0.290  Sum_probs=204.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 015564           73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS  152 (404)
Q Consensus        73 ~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~  152 (404)
                      +..+.+++.+.-.+++.......+++ .....|             ...+.++++++.+.+.+.+.|++|+|.+++++++
T Consensus        32 ~~~lt~~q~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~k   97 (303)
T PF08449_consen   32 PLFLTFVQFAFNALFSFILLSLFKFP-KSRKIP-------------LKKYAILSFLFFLASVLSNAALKYISYPTQIVFK   97 (303)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcccc-CCCcCh-------------HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHh
Confidence            56688888888888888776554411 111111             1268899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 015564          153 NLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL-PVAMGAYIYTLIFITVPSMASVFNEYAL  231 (404)
Q Consensus       153 q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~-~~~~~G~ll~L~a~~~sala~Vy~ekll  231 (404)
                      ++|++++++++++++|||++++||+++++.++|+++....+..+....... .....|+++.+++.+++|+.++|.||++
T Consensus        98 s~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~  177 (303)
T PF08449_consen   98 SSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLF  177 (303)
T ss_pred             hhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999877654322211111 1112399999999999999999999999


Q ss_pred             hhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CccccccCChHHHH---HHHHHHHHHHHHHHHHHHHhhhHHH
Q 015564          232 KSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGP--DNLDILQGHSKATM---LLIFNNAAQGILSCFFLKYADAILK  306 (404)
Q Consensus       232 k~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~--~~~~~f~g~~~~~~---~~i~~~a~ggl~vs~v~kya~~i~k  306 (404)
                      +++ +.+.+...++..+++.++.++..+.-  ..++  +...+...++...+   ...+.+++|...+...+|..++...
T Consensus       178 ~~~-~~~~~~~mfy~n~~~~~~~~~~~~~l--~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~  254 (303)
T PF08449_consen  178 KKY-GKSPWELMFYTNLFSLPFLLILLFLL--PTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTT  254 (303)
T ss_pred             HHh-CCcHHHHHHHHHHHHHHHHHHHHHHH--HhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence            987 55667777788888888776655430  0111  11223333332222   2234556777788888899999999


Q ss_pred             HHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccccc
Q 015564          307 KYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKA  354 (404)
Q Consensus       307 ~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~  354 (404)
                      +..++++.+++.++|+++||+++++.+++|+++|+.|+.+|+.+.+|+
T Consensus       255 t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  255 TIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            999999999999999999999999999999999999999999865554

; GO: 0055085 transmembrane transport

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.92  E-value=1.5e-22  Score=199.52  Aligned_cols=230  Identities=15%  Similarity=0.177  Sum_probs=182.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCC
Q 015564          117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPE  196 (404)
Q Consensus       117 r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~  196 (404)
                      +..|+|.+.|++++..|.+...|++|++.+.+|++.++.+++++++|+++||+|+++.||+++++.++|+.++...+...
T Consensus        77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~  156 (334)
T PF06027_consen   77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS  156 (334)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999987765433


Q ss_pred             CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCC
Q 015564          197 GSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGH  276 (404)
Q Consensus       197 ~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~  276 (404)
                      +++..+.+....|++++++++++.|++.|+.|+..|+.   +......++.++|.+++.+...+   +|..+-.. + .|
T Consensus       157 ~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~i---le~~~i~~-~-~w  228 (334)
T PF06027_consen  157 GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAI---LERSGIES-I-HW  228 (334)
T ss_pred             cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHh---eehhhhhc-c-CC
Confidence            22222234456799999999999999999999999874   44555677888998887765432   33322111 1 23


Q ss_pred             hHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccc
Q 015564          277 SKATMLLIF----NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLS  352 (404)
Q Consensus       277 ~~~~~~~i~----~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~  352 (404)
                      ++..+...+    .......++..++++.++..-+....++.+++.++++++||+++++.+++|.++|++|..+|+..++
T Consensus       229 ~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  229 TSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            433332221    1222334667888889888888888888999999999999999999999999999999999998544


Q ss_pred             cc
Q 015564          353 KA  354 (404)
Q Consensus       353 ~~  354 (404)
                      +.
T Consensus       309 ~~  310 (334)
T PF06027_consen  309 PE  310 (334)
T ss_pred             cc
Confidence            43

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.91  E-value=4.2e-22  Score=188.68  Aligned_cols=300  Identities=15%  Similarity=0.214  Sum_probs=235.5

Q ss_pred             CcccchhhHHHHHHHHHHHHHHHhhhhhhhh--hcc---cCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 015564           31 KTRVSSKQRVLNVFLVVGDCMLVGLQPILVY--MSK---VDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKP  105 (404)
Q Consensus        31 ~~~~~~k~~~l~~ll~~~~~~~~~~~~il~~--~s~---~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~  105 (404)
                      ..+...+....+++++.+....|..++++.+  +.+   +++++.=++.-.+|.+.++.++++..++..++.. ..+..|
T Consensus         4 ~~~~~~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~ap   82 (327)
T KOG1581|consen    4 NSGGMANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAP   82 (327)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCc
Confidence            3333344455667777777777777777765  222   2333333556678899999999997776554432 222223


Q ss_pred             cchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 015564          106 LLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIG  185 (404)
Q Consensus       106 ~~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~G  185 (404)
                      +             +.+...++...+...|+|.||+|++.+|..+.+++|.+.++++..++.|+|++.+.+++.++...|
T Consensus        83 l-------------~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~G  149 (327)
T KOG1581|consen   83 L-------------YKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLG  149 (327)
T ss_pred             h-------------hHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhh
Confidence            2             367888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015564          186 ISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFK  265 (404)
Q Consensus       186 v~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~  265 (404)
                      |.+..+.+..++....+.+...+|++++...-++.|+.+...+++.|+. +.+.+..++.+.+|+.+.+...++    .+
T Consensus       150 vsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li----~q  224 (327)
T KOG1581|consen  150 VSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLI----LQ  224 (327)
T ss_pred             eeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhh----cC
Confidence            9998776543333344556677899999999999999999999999975 788888889999999999887744    23


Q ss_pred             CC--CccccccCChHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 015564          266 GP--DNLDILQGHSKATMLLI---FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV  340 (404)
Q Consensus       266 g~--~~~~~f~g~~~~~~~~i---~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lV  340 (404)
                      |.  .+..|...++...|.+.   ...++|+.++.+.+...++++-...++++-++++++|.++||+++++.+++|..+|
T Consensus       225 g~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iV  304 (327)
T KOG1581|consen  225 GHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIV  304 (327)
T ss_pred             CCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeee
Confidence            32  12345555554444443   45678899999999999999988888899999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 015564          341 FISMHQFFS  349 (404)
Q Consensus       341 i~gv~ly~~  349 (404)
                      +.|+++=..
T Consensus       305 Fg~i~l~~~  313 (327)
T KOG1581|consen  305 FGGIFLEIL  313 (327)
T ss_pred             hHHHHHHHH
Confidence            999875444

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.89  E-value=7.1e-20  Score=183.34  Aligned_cols=289  Identities=14%  Similarity=0.143  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhh
Q 015564           39 RVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARN  118 (404)
Q Consensus        39 ~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~  118 (404)
                      +...++..++.+  |+.+.++.|.+-++|   .++...+++|-.+..++.+.+.+..+++..   .|..+       +|+
T Consensus        13 ~~~~~~~~~q~~--~~~~~~~~k~a~~~G---~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~---~~~~~-------~~~   77 (358)
T PLN00411         13 VFLTAMLATETS--VVGISTLFKVATSKG---LNIYPFLGYSYLLASLLLLPSLFFTNRSRS---LPPLS-------VSI   77 (358)
T ss_pred             chHHHHHHHHHH--HHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcch-------HHH
Confidence            345555555555  666666777666544   445567788877776555544433322111   11111       222


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHH------hCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564          119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKII------MRRRFSIIQWEALALLLIGISVNQLR  192 (404)
Q Consensus       119 ~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~------L~ekls~~qwlal~Ll~~Gv~lv~~~  192 (404)
                      ...+++.+++-++.+.+.|.+++|++++...++.++.|++|+++++++      +|||++++||+++++.++|+.++...
T Consensus        78 ~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         78 LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            335666666656777899999999999999999999999999999999      69999999999999999999987643


Q ss_pred             CCCCC--------------C--CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH-HHHHH
Q 015564          193 SLPEG--------------S--TAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYG-AIFNF  255 (404)
Q Consensus       193 ~~~~~--------------~--~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g-~l~~~  255 (404)
                      +.+..              .  ...+......|.++.++++++++++.+..++..+++  ++....+.+...++ ..+..
T Consensus       158 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~--~~~~~~t~~~~~~~~~~~~~  235 (358)
T PLN00411        158 HGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY--PAAFTVSFLYTVCVSIVTSM  235 (358)
T ss_pred             cCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CcHhHHHHHHHHHHHHHHHH
Confidence            22100              0  000111124588999999999999999999988775  23322233322222 22222


Q ss_pred             HHHHHHHHhcCCCccccccCChHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccH
Q 015564          256 LGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQ----GILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTM  331 (404)
Q Consensus       256 ~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~a~g----gl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~  331 (404)
                      +..    ..++.........++...+. +++.++.    ..+-.+.+|+.++...+....+.|++++++|++++||++++
T Consensus       236 ~~l----~~~~~~~~~~~~~~~~~~~~-i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~  310 (358)
T PLN00411        236 IGL----VVEKNNPSVWIIHFDITLIT-IVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYL  310 (358)
T ss_pred             HHH----HHccCCcccceeccchHHHH-HHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcH
Confidence            222    22322111112233333222 3333332    22333466788888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 015564          332 NFLLGISIVFISMHQFFS  349 (404)
Q Consensus       332 ~~~lG~~lVi~gv~ly~~  349 (404)
                      .+++|+++|+.|+++...
T Consensus       311 ~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        311 GCLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999999876

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.86  E-value=1.7e-18  Score=169.38  Aligned_cols=271  Identities=16%  Similarity=0.203  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhH
Q 015564           42 NVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVL  121 (404)
Q Consensus        42 ~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  121 (404)
                      ..+++...++.++.+++..|...     .++|.+.++.|-++..++-..++..+++..        ..++..+.+++...
T Consensus         9 g~~~~l~a~~~wg~~~~~~k~~~-----~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~   75 (296)
T PRK15430          9 GVLLALAAYFIWGIAPAYFKLIY-----YVPADEILTHRVIWSFFFMVVLMSICRQWS--------YLKTLIQTPQKIFM   75 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHccHH--------HHHHHHcCHHHHHH
Confidence            44556666777999998888652     267899999999998764444433222110        00000011222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 015564          122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM  201 (404)
Q Consensus       122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~  201 (404)
                      ....++.+.+++.+.|+|++++|+++..++.++.|+++++++++++|||++++||.++++.++|+.++..++   ++   
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~---~~---  149 (296)
T PRK15430         76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF---GS---  149 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc---CC---
Confidence            345567788999999999999999999999999999999999999999999999999999999999875331   11   


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHH
Q 015564          202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATM  281 (404)
Q Consensus       202 ~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~  281 (404)
                       .      .+++++++++++++.++.|+..++. .......+.+...++.+.    .+.  ....+..  .....++..|
T Consensus       150 -~------~~~~l~aa~~~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~--~~~~~~~~~~  213 (296)
T PRK15430        150 -L------PIIALGLAFSFAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIY----LFA--IADSSTS--HMGQNPMSLN  213 (296)
T ss_pred             -c------cHHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHH----HHH--HccCCcc--cccCCcHHHH
Confidence             0      1346778889999888888864321 112222233322222221    111  1111100  0111111112


Q ss_pred             HHH----HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564          282 LLI----FNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (404)
Q Consensus       282 ~~i----~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly  347 (404)
                      ..+    +..+++..+....+|+.++...+...+..++++.+++++++||+++..+++|+++|+.++-+.
T Consensus       214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~  283 (296)
T PRK15430        214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF  283 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            211    133355567778889999999999999999999999999999999999999999997765433

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.86  E-value=1.6e-18  Score=173.41  Aligned_cols=256  Identities=13%  Similarity=0.195  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 015564           73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS  152 (404)
Q Consensus        73 ~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~  152 (404)
                      |.+...++-++..+++.++.. .+.+    .+|...  .....+   ......++++...+...+.|+++.+++.+++++
T Consensus        78 P~~l~~~~~~~~~l~~~~~~~-~~~~----~~~~~~--~~~~~~---~~llp~gl~~~~~~~~~~~sl~~~svs~~~iik  147 (350)
T PTZ00343         78 PWTISSLQLFVGWLFALLYWA-TGFR----KIPRIK--SLKLFL---KNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVK  147 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH-hCCC----CCCCCC--CHHHHH---HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            677888888888766554421 1111    111111  001112   256677788887788888999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015564          153 NLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALK  232 (404)
Q Consensus       153 q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk  232 (404)
                      .+.|++|++++++++|||+++++|+++++.++|+.+....+.         ..+..|+++++++++++++.+++.||+++
T Consensus       148 a~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~  218 (350)
T PTZ00343        148 AAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL---------HFTWLAFWCAMLSNLGSSLRSIFAKKTMK  218 (350)
T ss_pred             HhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999764221         12356999999999999999999999987


Q ss_pred             hcCC--cchHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCccc-------cccCChH-HHHHHHHHHHHHHHHHH----H
Q 015564          233 SQYD--TSIYLQNLFL--YGYGAIFNFLGILVTAIFKGPDNLD-------ILQGHSK-ATMLLIFNNAAQGILSC----F  296 (404)
Q Consensus       233 ~~~~--~s~~~~n~~l--~~~g~l~~~~~~l~~~~~~g~~~~~-------~f~g~~~-~~~~~i~~~a~ggl~vs----~  296 (404)
                      +...  .+....+.+.  ..+|.++.+|..+.   .++.....       .+..+.+ ..+..++..++.+.+..    +
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~  295 (350)
T PTZ00343        219 NKSEIGENLTASNIYMLLTLIASLISLPLVLF---FEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFY  295 (350)
T ss_pred             ccccccccCCHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6410  0122233333  45666666665432   22211000       1112211 11222333333333333    4


Q ss_pred             HHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          297 FLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       297 v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      .+++.+++..+.+.++.+++++++|+++|||++|..+++|.++++.|+++|+..
T Consensus       296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            778889999999999999999999999999999999999999999999999874

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.84  E-value=3.8e-18  Score=167.08  Aligned_cols=217  Identities=12%  Similarity=0.163  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (404)
Q Consensus       121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~  200 (404)
                      .....+++.++++.+.+++++|+++++++++.++.|+++++++++++|||+++++|+++++.++|+++....+       
T Consensus        67 ~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-------  139 (302)
T TIGR00817        67 LLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-------  139 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-------
Confidence            5666778888999999999999999999999999999999999999999999999999999999998763211       


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--ccccc---C
Q 015564          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN--LDILQ---G  275 (404)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~--~~~f~---g  275 (404)
                        .+....|+++++++++++++..++.||..+++ +.+.+..+.+....+.++.+|....   .++...  .+..+   .
T Consensus       140 --~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~~---~~~~~~~~~~~~~~~~~  213 (302)
T TIGR00817       140 --LSFNWAGFLSAMISNITFVSRNIFSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAFI---TEGPPFLPHGFMQAISG  213 (302)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHHHhhcc
Confidence              11234699999999999999999999988732 2233444445555666555554332   232110  00000   0


Q ss_pred             Ch-HHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          276 HS-KATMLLIFNNAAQG-----ILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       276 ~~-~~~~~~i~~~a~gg-----l~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                      .+ ...|..++..+++.     ......+|+.++...+....+.+++++++|++++||++|..+++|+++++.|+++|++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       214 VNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            11 11222222222211     1222467888999888989999999999999999999999999999999999999997


Q ss_pred             c
Q 015564          350 S  350 (404)
Q Consensus       350 ~  350 (404)
                      .
T Consensus       294 ~  294 (302)
T TIGR00817       294 V  294 (302)
T ss_pred             H
Confidence            4

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.84  E-value=1.2e-17  Score=163.49  Aligned_cols=272  Identities=16%  Similarity=0.138  Sum_probs=179.6

Q ss_pred             HHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHH
Q 015564           46 VVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVP  125 (404)
Q Consensus        46 ~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vp  125 (404)
                      ....++.+++..+.+|..-++    .+|...+++|-.+-.++.+.+.  .+++     .+.   +          ....-
T Consensus         9 ~l~~~~~Wg~~~~~~k~~~~~----~~p~~~~~~R~~~a~~~l~~~~--~~~~-----~~~---~----------~~~~~   64 (299)
T PRK11453          9 ALLVVVVWGLNFVVIKVGLHN----MPPLMLAGLRFMLVAFPAIFFV--ARPK-----VPL---N----------LLLGY   64 (299)
T ss_pred             HHHHHHHHhhhHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHh--cCCC-----Cch---H----------HHHHH
Confidence            444567788888888865443    6788888888877543322221  1110     110   0          01111


Q ss_pred             HH-HHHHHHHHHHHHHhc-cChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 015564          126 AF-LYAINNYLKFIMQLY-FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGL  203 (404)
Q Consensus       126 A~-ly~~~n~L~f~al~~-l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~  203 (404)
                      ++ .+..+..+.|.++++ ++++...++.++.|+++++++++++|||++++||+++++.++|+.++..++..      +.
T Consensus        65 g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~------~~  138 (299)
T PRK11453         65 GLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN------GQ  138 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC------Cc
Confidence            22 234566677889987 78899999999999999999999999999999999999999999987643211      11


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccCChHHHHH
Q 015564          204 PVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN-LDILQGHSKATML  282 (404)
Q Consensus       204 ~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~-~~~f~g~~~~~~~  282 (404)
                      +....|+++.++++++++.+.++.||..++..+......+......+.   .+........+++.. ...+..+++..|.
T Consensus       139 ~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (299)
T PRK11453        139 HVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPI---IPFFVASLILDGSATMIHSLVTIDMTTIL  215 (299)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHH---HHHHHHHHHhcCchhhhhhhccCCHHHHH
Confidence            122359999999999999999999997664311111111111111111   122111112233211 0112334555666


Q ss_pred             HHHHHHHHHHHHHHH-----HHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          283 LIFNNAAQGILSCFF-----LKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       283 ~i~~~a~ggl~vs~v-----~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      .+++.++.+..+++.     +++.++...+...++.|+++.+++++++||+++..+++|+++|+.|+++-..+
T Consensus       216 ~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        216 SLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            666666555544443     45667777778888999999999999999999999999999999999876654

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.83  E-value=2.1e-18  Score=161.67  Aligned_cols=286  Identities=14%  Similarity=0.165  Sum_probs=194.9

Q ss_pred             hhhhhcc---cCC----cccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCcchHHHHHHH--hhhhhHHHHHHH
Q 015564           58 ILVYMSK---VDG----RFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGE-KPLLSISTFIQA--ARNNVLLAVPAF  127 (404)
Q Consensus        58 il~~~s~---~~~----~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~-~~~~~~~~~~~~--~r~~~~~~vpA~  127 (404)
                      ++.|++.   .+|    .-++-.+...|+.|+..+.+-..+-.+..++....+ ....+     |.  +-+...+..||+
T Consensus        20 l~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ils-----q~~~pf~p~lfl~Pal   94 (372)
T KOG3912|consen   20 LVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILS-----QDSSPFNPVLFLPPAL   94 (372)
T ss_pred             HHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccc-----cccCCCCcceecChHH
Confidence            4667654   222    124555677899999887665444333322211110 00010     11  112235667999


Q ss_pred             HHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCC-CCCCccc
Q 015564          128 LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGST-AMGLPVA  206 (404)
Q Consensus       128 ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~-~~~~~~~  206 (404)
                      +......+.|+++.+.+++.||+++...++||++|+..+|||+++.+||+++....+|++++...+....+. .......
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~i  174 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSI  174 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999987653211111 1112223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH-HHHHHHHHHHHHHhcCCC----ccccccCChHHHH
Q 015564          207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYG-AIFNFLGILVTAIFKGPD----NLDILQGHSKATM  281 (404)
Q Consensus       207 ~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g-~l~~~~~~l~~~~~~g~~----~~~~f~g~~~~~~  281 (404)
                      ..|+++.+.+.+.-|...|+.||.+|++ +.++..-.-+-.+|| .++++.++.+..+..+..    +.+.++.|.. +|
T Consensus       175 itGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~-~~  252 (372)
T KOG3912|consen  175 ITGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGD-AF  252 (372)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHH-HH
Confidence            4699999999999999999999999987 455544444557778 344444443332222311    1222332221 11


Q ss_pred             H-----HHHHHHHHHHHHH---------HHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564          282 L-----LIFNNAAQGILSC---------FFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (404)
Q Consensus       282 ~-----~i~~~a~ggl~vs---------~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly  347 (404)
                      .     ..+..+.+|.+++         .+.|+.++..+-...++...+.++++..++.|.+...++.|.++.+.|+++|
T Consensus       253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY  332 (372)
T KOG3912|consen  253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY  332 (372)
T ss_pred             HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0     0112223333322         5668888888889999999999999999999999999999999999999999


Q ss_pred             ccc
Q 015564          348 FSS  350 (404)
Q Consensus       348 ~~~  350 (404)
                      +.-
T Consensus       333 ~~i  335 (372)
T KOG3912|consen  333 NQI  335 (372)
T ss_pred             HHH
Confidence            863

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.82  E-value=4.9e-17  Score=158.66  Aligned_cols=275  Identities=12%  Similarity=0.125  Sum_probs=189.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHh
Q 015564           37 KQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAA  116 (404)
Q Consensus        37 k~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~  116 (404)
                      +|..-.++.+....+.+++..+.+|...++    .+|.+.+++|-++..++-+.++..++++     .+  +.+.+    
T Consensus         4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~~~----~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~--~~~~~----   68 (292)
T PRK11272          4 RQLLPLFGALFALYIIWGSTYLVIRIGVES----WPPLMMAGVRFLIAGILLLAFLLLRGHP-----LP--TLRQW----   68 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CC--cHHHH----
Confidence            455555666777778899999899876553    6688899999998876655554433221     11  11111    


Q ss_pred             hhhhHHHHHHHH-HHHHHHHHHHHH-hccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCC
Q 015564          117 RNNVLLAVPAFL-YAINNYLKFIMQ-LYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSL  194 (404)
Q Consensus       117 r~~~~~~vpA~l-y~~~n~L~f~al-~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~  194 (404)
                         ....+.+.+ ...++.+.|.+. ++.+++...++..+.|+++++++.+ +|||++++||.++++.++|+.++..++.
T Consensus        69 ---~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~  144 (292)
T PRK11272         69 ---LNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN  144 (292)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc
Confidence               123344443 456788889998 9999999999999999999999985 7999999999999999999988754321


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 015564          195 PEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQ  274 (404)
Q Consensus       195 ~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~  274 (404)
                      .        +....|+++++++++++++.+++.||..++   .+......++ ..+.+...+...    ..+..   ...
T Consensus       145 ~--------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~----~~~~~---~~~  205 (292)
T PRK11272        145 L--------SGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEM-LAAGVVLLIASL----LSGER---LTA  205 (292)
T ss_pred             c--------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHH-HHHHHHHHHHHH----HcCCc---ccc
Confidence            1        112358999999999999999999886543   2333333333 233332222211    12211   011


Q ss_pred             CChHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          275 GHSKATMLLIFNNAAQG-----ILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       275 g~~~~~~~~i~~~a~gg-----l~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                      ..+...|..+++.++.+     .+....+|+.++...+...+..++++.+++++++||++|..+++|+++|+.|+++.+.
T Consensus       206 ~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        206 LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            12334455544444443     3444556778887788888899999999999999999999999999999999987655

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.79  E-value=2.3e-16  Score=150.39  Aligned_cols=205  Identities=14%  Similarity=0.117  Sum_probs=152.1

Q ss_pred             HHHHH-HHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564          122 LAVPA-FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (404)
Q Consensus       122 ~~vpA-~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~  200 (404)
                      +.+.+ +...+++.+.|.|++|+++++..++.++.|+++++++.+++|||++++||.++++.++|+.++..++.  .   
T Consensus        49 ~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~--~---  123 (260)
T TIGR00950        49 LLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN--L---  123 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--c---
Confidence            34444 55679999999999999999999999999999999999999999999999999999999998764321  1   


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHH
Q 015564          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKAT  280 (404)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~  280 (404)
                         .....|+++.++++++++...++.++..++. +.+....+.+.+..+.++..+...    ..++..     ..+...
T Consensus       124 ---~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~-----~~~~~~  190 (260)
T TIGR00950       124 ---SINPAGLLLGLGSGISFALGTVLYKRLVKKE-GPELLQFTGWVLLLGALLLLPFAW----FLGPNP-----QALSLQ  190 (260)
T ss_pred             ---cccHHHHHHHHHHHHHHHHHHHHHhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHH----hcCCCC-----CcchHH
Confidence               1224589999999999999999999987654 222222222233444444333322    222211     112223


Q ss_pred             HHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Q 015564          281 MLLIF-----NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISM  344 (404)
Q Consensus       281 ~~~i~-----~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv  344 (404)
                      |..++     ...++..+....+|+.++...+...++.++++.+++++++||+++..+++|..+++.|+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       191 WGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            32222     23344455666778888888889999999999999999999999999999999999885

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.76  E-value=7.7e-16  Score=150.48  Aligned_cols=270  Identities=11%  Similarity=0.059  Sum_probs=175.7

Q ss_pred             HHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHH
Q 015564           45 LVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAV  124 (404)
Q Consensus        45 l~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v  124 (404)
                      +....++.++..-+..|..-++    ++|....++|-.+..++-..+  . +++..   +. .       .++   ....
T Consensus         8 ~~l~a~~~Wg~~~~~~k~~~~~----~~P~~~~~~R~~~a~l~l~~~--~-~~~~~---~~-~-------~~~---~~~~   66 (295)
T PRK11689          8 IGLIAILLWSTMVGLIRGVSES----LGPVGGAAMIYSVSGLLLLLT--V-GFPRL---RQ-F-------PKR---YLLA   66 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHHHHHHHHHHHHH--c-ccccc---cc-c-------cHH---HHHH
Confidence            3444556688877777765443    678888888866654443322  1 11100   00 0       011   1122


Q ss_pred             HHHHHHHHHHHHHHHHh----ccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCC-CC
Q 015564          125 PAFLYAINNYLKFIMQL----YFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEG-ST  199 (404)
Q Consensus       125 pA~ly~~~n~L~f~al~----~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~-~~  199 (404)
                      -++.+++++.+.|.+++    ++++.+..++.++.|+++++++++++|||++++||.++++.++|+.++..++.+.+ .+
T Consensus        67 ~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~  146 (295)
T PRK11689         67 GGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAE  146 (295)
T ss_pred             HhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhh
Confidence            24456677777787775    46888899999999999999999999999999999999999999988865432100 00


Q ss_pred             -CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChH
Q 015564          200 -AMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSK  278 (404)
Q Consensus       200 -~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~  278 (404)
                       ..+......|++++++++++++++.++.||..++. + +. .  ......+..+ .+..    ..++..    ...+++
T Consensus       147 ~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~-~~-~--~~~~~~~~~l-~~~~----~~~~~~----~~~~~~  212 (295)
T PRK11689        147 LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-N-GI-T--LFFILTALAL-WIKY----FLSPQP----AMVFSL  212 (295)
T ss_pred             hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-C-ch-h--HHHHHHHHHH-HHHH----HHhcCc----cccCCH
Confidence             00111123589999999999999999999986553 2 22 1  1111122221 1111    122211    122333


Q ss_pred             HHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          279 ATMLLIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       279 ~~~~~i~~~a~----ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                      ..|..+++.++    +..+-...+|+.++...+...++.|+++.+++++++||+++..+++|+++|+.|+++...
T Consensus       213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            34444333332    233445677888888889999999999999999999999999999999999999876654

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.76  E-value=2.4e-15  Score=146.84  Aligned_cols=267  Identities=12%  Similarity=-0.008  Sum_probs=176.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhh
Q 015564           38 QRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAAR  117 (404)
Q Consensus        38 ~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r  117 (404)
                      +++..  ++...++.++....+.|+.-++    +++...++.|-++-.++-+.+..+.+.+        .+.+       
T Consensus        11 ~~~~~--~~~la~~~~~~~~~~~K~~~~~----~~~~~~~~~R~~~a~l~l~~~~~~~~~~--------~~~~-------   69 (293)
T PRK10532         11 WLPIL--LLLIAMASIQSGASLAKSLFPL----VGAPGVTALRLALGTLILIAIFKPWRLR--------FAKE-------   69 (293)
T ss_pred             chHHH--HHHHHHHHHHhhHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHhHHhcc--------CCHH-------
Confidence            44543  4444455577777788765442    6788888999888866554433221110        0111       


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCC
Q 015564          118 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEG  197 (404)
Q Consensus       118 ~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~  197 (404)
                      +.......++++.+.+.+.|++++|+|++...++..+.|+++++++.    ||.+..+|  +.+.++|+.++..++.+.+
T Consensus        70 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~~~~~~~  143 (293)
T PRK10532         70 QRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLPLGQDVS  143 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHHH--HHHHHHHHheeeecCCCcc
Confidence            11123445566788889999999999999999999999999998873    55555555  5567899887653322111


Q ss_pred             CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCh
Q 015564          198 STAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHS  277 (404)
Q Consensus       198 ~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~  277 (404)
                          +  ....|+++++++++++++..++.||..+++   +......+ .+++.++..+...    .++..     ..++
T Consensus       144 ----~--~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~---~~~~~~~~-~~~~~~~l~~~~~----~~~~~-----~~~~  204 (293)
T PRK10532        144 ----H--VDLTGAALALGAGACWAIYILSGQRAGAEH---GPATVAIG-SLIAALIFVPIGA----LQAGE-----ALWH  204 (293)
T ss_pred             ----c--CChHHHHHHHHHHHHHHHHHHHHHHHhccC---CchHHHHH-HHHHHHHHHHHHH----HccCc-----ccCC
Confidence                1  123599999999999999999999987653   22223333 3344433333222    22211     1123


Q ss_pred             HHHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          278 KATMLL-----IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       278 ~~~~~~-----i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      +..|..     ++...++..+....+++.++...+...++.++++.+++++++||+++..+++|+++|+.|+..+...
T Consensus       205 ~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        205 WSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            333322     2233333345567778889888899999999999999999999999999999999999998887654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.75  E-value=2.5e-17  Score=151.04  Aligned_cols=282  Identities=13%  Similarity=0.143  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHhhhhhhhh-hcc---c-CC----cccchHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCCCcchHHHHH
Q 015564           44 FLVVGDCMLVGLQPILVY-MSK---V-DG----RFKFSPISVNFLTEMTKVLFAIVML-FFQARHQKVGEKPLLSISTFI  113 (404)
Q Consensus        44 ll~~~~~~~~~~~~il~~-~s~---~-~~----~~~~~~~~~V~l~E~~Kl~is~~~l-~~~~~~~~~~~~~~~~~~~~~  113 (404)
                      +|..+..++|-..+|..+ ..+   . +|    ++.|. -+.||++....-+++=+++ ++.+.+.   ++.        
T Consensus        16 ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfa-laLVf~qC~~N~vfAkvl~~ir~~~~~---D~t--------   83 (337)
T KOG1580|consen   16 ICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFA-LALVFFQCTANTVFAKVLFLIRKKTEI---DNT--------   83 (337)
T ss_pred             EEecchhheehhhhhHHHHhhccccCCCCcchheehHH-HHHHHHHHHHHHHHHHhheeecccccc---cCC--------
Confidence            344455555666665544 222   1 11    22333 3678889888888875443 3322211   110        


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564          114 QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (404)
Q Consensus       114 ~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~  193 (404)
                          ..+.|+-.++.|.+...-...|++++|.+|..+-+++||+.++++.+++.+++++++++.++++..+||++..+.+
T Consensus        84 ----~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~  159 (337)
T KOG1580|consen   84 ----PTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKE  159 (337)
T ss_pred             ----cchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccc
Confidence                1236778888999999999999999999999999999999999999999999999999999999999999998764


Q ss_pred             CCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cc
Q 015564          194 LPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN--LD  271 (404)
Q Consensus       194 ~~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~--~~  271 (404)
                      ..-++.+  ......|-++.+++-.+.|+.++..|++.+.+. ++-...+..+.+|+.+....+++    +.|+.+  .-
T Consensus       160 ~Kv~g~e--~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq-~~g~~MM~~~NlwStL~Lg~g~l----fTGElweF~y  232 (337)
T KOG1580|consen  160 NKVGGAE--DKTFGFGELLLILSLAMDGLTGSIQDRIRASYQ-RTGTSMMFYTNLWSTLYLGAGLL----FTGELWEFFY  232 (337)
T ss_pred             cccCCCc--ccccchHHHHHHHHHHhcccchhHHHHHHHhhc-cCchhhHHHHHHHHHHHhhhhhe----ehhhHHHHHH
Confidence            3211110  011234778889999999999999999987663 23333455667888887666554    445421  12


Q ss_pred             cccCChHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015564          272 ILQGHSKATMLL---IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (404)
Q Consensus       272 ~f~g~~~~~~~~---i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~  348 (404)
                      |-+.++...|-+   -+...+|+.++...+-+.++...+..++....|+++.|+++|+++++..+|+|..+|+.+...=.
T Consensus       233 F~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  233 FVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            334455444433   23456788888888889999999999999999999999999999999999999999999876433

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.73  E-value=1.6e-15  Score=147.19  Aligned_cols=211  Identities=12%  Similarity=0.101  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 015564          123 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMG  202 (404)
Q Consensus       123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~  202 (404)
                      ..-+.....++.+.+.++++.|++....+.++.|+++++++++++|||++++||.++++.++|+.++..++.. .     
T Consensus        67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-~-----  140 (281)
T TIGR03340        67 AISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-Q-----  140 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc-c-----
Confidence            3445667889999999999999999999999999999999999999999999999999999999987654321 1     


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccCChHH--
Q 015564          203 LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFN-FLGILVTAIFKGPDNLDILQGHSKA--  279 (404)
Q Consensus       203 ~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~-~~~~l~~~~~~g~~~~~~f~g~~~~--  279 (404)
                        ....|+.++++++++++++.++.|+..++.+  +. ....+...++.++. .+..... ...+.... .......+  
T Consensus       141 --~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~  213 (281)
T TIGR03340       141 --HRRKAYAWALAAALGTAIYSLSDKAAALGVP--AF-YSALGYLGIGFLAMGWPFLLLY-LKRHGRSM-FPYARQILPS  213 (281)
T ss_pred             --cchhHHHHHHHHHHHHHHhhhhccccccchh--cc-cccHHHHHHHHHHHHHHHHHHH-HHHhccch-hhhHHHHHHH
Confidence              1123667788888999998887776543321  11 11111112222221 2221111 11111100 00111111  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015564          280 TMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ  346 (404)
Q Consensus       280 ~~~~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~l  346 (404)
                      .+...+..+++..+....+++.++...+...+++++++.+++++++||+++..+++|+++|+.|+++
T Consensus       214 ~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       214 ATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            1111222233344445566777766666667789999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.69  E-value=1.8e-13  Score=131.28  Aligned_cols=210  Identities=19%  Similarity=0.228  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 015564          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLK-IIMRRRFSIIQWEALALLLIGISVNQLRSLPEGST  199 (404)
Q Consensus       121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~-l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~  199 (404)
                      ......+.....+.+.|.++++++++...++.++.|++++++++ +++|||+++++|.++++.++|+.++..++..+.. 
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~-  150 (292)
T COG0697          72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI-  150 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-
Confidence            34555677889999999999999999999999999999999997 7779999999999999999999999766532111 


Q ss_pred             CCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccccCChH
Q 015564          200 AMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQN-LFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSK  278 (404)
Q Consensus       200 ~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n-~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~  278 (404)
                          + ...|.+++++++++.+++.++.|++. +.  .+....- .++  .+...    ..........   +  ...+.
T Consensus       151 ----~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~--~~~~~----~~~~~~~~~~---~--~~~~~  211 (292)
T COG0697         151 ----L-SLLGLLLALAAALLWALYTALVKRLS-RL--GPVTLALLLQL--LLALL----LLLLFFLSGF---G--APILS  211 (292)
T ss_pred             ----H-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHH--HHHHH----HHHHHHhccc---c--ccCCH
Confidence                0 34689999999999999999999987 32  2221111 111  11111    1110011111   0  11122


Q ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          279 ATMLLIFN-----NAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       279 ~~~~~i~~-----~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      ..|..+..     .+++..+....++..++...+......++++.+++++++||+++..+++|.++++.|+.+.+..
T Consensus       212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            22333222     2234445556667777777777778899999999999999999999999999999999888764

>TIGR00688 rarD rarD protein

Probab=99.63  E-value=2.7e-13  Score=129.61  Aligned_cols=248  Identities=11%  Similarity=0.034  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHH-Hhh-hhh
Q 015564           43 VFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQ-AAR-NNV  120 (404)
Q Consensus        43 ~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~-~~r-~~~  120 (404)
                      .+++...++.++..+++.|... +    .+|.+.++.|.++..++-..++...+++..  .     .+++.. ..+ ...
T Consensus         4 ~~~~i~a~~~wg~~~~~~k~~~-~----~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~   71 (256)
T TIGR00688         4 IIVSLLASFLFGYMYYYSKLLK-P----LPATDILGHRMIWSFPFMLLSVTLFRQWAA--L-----IERLKRIQKRPLIL   71 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-c----CCHHHHHHHHHHHHHHHHHHHHHHHcchHH--H-----HHHHhCcccchHHH
Confidence            3456666777999999998632 2    679999999999876543333222221100  0     000000 001 112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (404)
Q Consensus       121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~  200 (404)
                      ...+.+++..+++.+.|+|++++++++..++.++.|+++++++++++|||++++||+++++.++|++++..++   ++  
T Consensus        72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~---~~--  146 (256)
T TIGR00688        72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK---GS--  146 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc---CC--
Confidence            4566777888999999999999999999999999999999999999999999999999999999999875331   11  


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHH
Q 015564          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKAT  280 (404)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~  280 (404)
                          .   . +++++++++.++..++.|+..+++   ..  +.....+...++..+..+    ..+............+.
T Consensus       147 ----~---~-~~~l~aa~~~a~~~i~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  209 (256)
T TIGR00688       147 ----L---P-WEALVLAFSFTAYGLIRKALKNTD---LA--GFCLETLSLMPVAIYYLL----QTDFATVQQTNPFPIWL  209 (256)
T ss_pred             ----c---h-HHHHHHHHHHHHHHHHHhhcCCCC---cc--hHHHHHHHHHHHHHHHHH----HhccCcccccCchhHHH
Confidence                0   1 345778888999888888864421   11  111101111122111111    11110000001111122


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Q 015564          281 MLL--IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVL  324 (404)
Q Consensus       281 ~~~--i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~ll  324 (404)
                      ++.  .+..+++..+....+|+.++...+...++.|+++.++++++
T Consensus       210 ~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       210 LLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            221  12234555677788899999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1.3e-14  Score=136.05  Aligned_cols=231  Identities=15%  Similarity=0.188  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 015564          121 LLAVPAFLYAINNYLKFIMQLY-FNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGST  199 (404)
Q Consensus       121 ~~~vpA~ly~~~n~L~f~al~~-l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~  199 (404)
                      .|++.-.++.+.|.+..+|+.+ ++.+...++++..++.+++++++++|||+|.+|+.+++++++|+++..+.+..+...
T Consensus        66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~  145 (330)
T KOG1583|consen   66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS  145 (330)
T ss_pred             hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence            4677777888889999999987 888999999999999999999999999999999999999999999876654332211


Q ss_pred             --------CCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH--H-----
Q 015564          200 --------AMGLPV--AMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT--A-----  262 (404)
Q Consensus       200 --------~~~~~~--~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~--~-----  262 (404)
                              +...+.  -.+|+.+..++.+.||..|+|+|..+|++.  .-|..+++   +.-.+++|+.+..  .     
T Consensus       146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG--Kh~~EalF---ytH~LsLP~Flf~~~div~~~  220 (330)
T KOG1583|consen  146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG--KHWKEALF---YTHFLSLPLFLFMGDDIVSHW  220 (330)
T ss_pred             hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHH---HHHHhccchHHHhcchHHHHH
Confidence                    001111  245888888899999999999999999973  34445544   4556666665421  0     


Q ss_pred             --HhcCCCc-cccccCChHHHHHHHHHHHHHH-HHHHHHHHH---hhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHH
Q 015564          263 --IFKGPDN-LDILQGHSKATMLLIFNNAAQG-ILSCFFLKY---ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLL  335 (404)
Q Consensus       263 --~~~g~~~-~~~f~g~~~~~~~~i~~~a~gg-l~vs~v~ky---a~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~l  335 (404)
                        .+.++.- .+.+...-+..|..++.+.+.+ .++..++-.   .++.+.+...+++..++.++|++.|.+++|++.++
T Consensus       221 ~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~l  300 (330)
T KOG1583|consen  221 RLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWL  300 (330)
T ss_pred             HHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHH
Confidence              1112110 0011111133444444443333 333333321   23333344455777899999999999999999999


Q ss_pred             HHHHHHHHHHHhccccccccc
Q 015564          336 GISIVFISMHQFFSSLSKAKD  356 (404)
Q Consensus       336 G~~lVi~gv~ly~~~~~~~~~  356 (404)
                      |+.+|+.|..+|....+++|.
T Consensus       301 Ga~lVF~Gt~~fa~~~~~~~~  321 (330)
T KOG1583|consen  301 GAALVFFGTLLFANVWNHPKA  321 (330)
T ss_pred             HHHHHHHHHHHHHHHHcCccc
Confidence            999999999999887666663

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.50  E-value=1.1e-14  Score=136.10  Aligned_cols=209  Identities=11%  Similarity=0.108  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCC-----CCCCCcc
Q 015564          131 INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGS-----TAMGLPV  205 (404)
Q Consensus       131 ~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~-----~~~~~~~  205 (404)
                      ..-.+.|||++||+.+.+.++..+.|.+|++|++.+|||++|+..-++..+.+.||+++..|++--++     +..+...
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~  188 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEY  188 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccc
Confidence            33478899999999999999999999999999999999999999999999999999999877642111     1111111


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHH
Q 015564          206 AMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIF  285 (404)
Q Consensus       206 ~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~  285 (404)
                      ...|.+..+.+++..+-..+..|++.|+- +-.  +...+....+.+.++++.....-++-|.     -|-+++....+.
T Consensus       189 ~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~--msvsyf~~i~lV~s~I~~~~ig~~~lP~-----cgkdr~l~~~lG  260 (346)
T KOG4510|consen  189 DIPGTVAAISSVLFGASVYIILRYIGKNA-HAI--MSVSYFSLITLVVSLIGCASIGAVQLPH-----CGKDRWLFVNLG  260 (346)
T ss_pred             cCCchHHHHHhHhhhhhHHHHHHHhhccc-cEE--EEehHHHHHHHHHHHHHHhhccceecCc-----cccceEEEEEeh
Confidence            23466666777776666667779988864 211  1122334445555544432111111110     111222111121


Q ss_pred             -HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564          286 -NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (404)
Q Consensus       286 -~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly  347 (404)
                       ..-+|+++++..++.-.+--.+.++++.++++.+..+++|||.||++.++|+++|+.++...
T Consensus       261 vfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  261 VFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV  323 (346)
T ss_pred             hhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence             23346677777776544445568888999999999999999999999999999999986543

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.45  E-value=3.8e-12  Score=119.38  Aligned_cols=220  Identities=15%  Similarity=0.114  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (404)
Q Consensus       121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~  200 (404)
                      .|.+.|.+-.....|..-++.|++.++..+.+++|.+.+.+.+.++=|+|+....+.|..++.+|.++..+.+....+  
T Consensus       108 tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP--  185 (367)
T KOG1582|consen  108 TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP--  185 (367)
T ss_pred             HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC--
Confidence            577888888888899999999999999999999999999999999999999999999999999999999876543221  


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccccCChH
Q 015564          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD--NLDILQGHSK  278 (404)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~--~~~~f~g~~~  278 (404)
                         ..+..|+.+.-++-++.|+-|-.+||.+|..+..+     .++-+++..+.++.++......|+-  .+.++..+++
T Consensus       186 ---NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss-----~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~  257 (367)
T KOG1582|consen  186 ---NFNLIGVMMISGALLADAVIGNVQEKAMKMNPASS-----SEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPV  257 (367)
T ss_pred             ---CcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCc-----ceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcH
Confidence               13446888877788889998989999999864333     2222333333333333222345542  2334444555


Q ss_pred             HHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          279 ATMLLIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       279 ~~~~~i~~~a~----ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      .++...+.-+.    |...+-..+|..++.+....++....+++++|+++|..|+|....-|..+|+.|+++-..+
T Consensus       258 ~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys  333 (367)
T KOG1582|consen  258 RTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS  333 (367)
T ss_pred             hHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence            45443333222    3334444567788888888888999999999999999999999999999999999975553

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.42  E-value=5.5e-10  Score=106.50  Aligned_cols=273  Identities=16%  Similarity=0.250  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhH
Q 015564           42 NVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVL  121 (404)
Q Consensus        42 ~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  121 (404)
                      .+++.....+.+|..|...|+-+.     .++.++.--|-+-.+.+.+.++...++..        ..+...+.+|....
T Consensus         8 Gil~~l~Ay~lwG~lp~y~kll~~-----~~~~eIlahRviwS~~~~l~ll~~~r~~~--------~~~~~~~~p~~~~~   74 (293)
T COG2962           8 GILLALLAYLLWGLLPLYFKLLEP-----LPATEILAHRVIWSFPFMLALLFLLRQWR--------ELKQLLKQPKTLLM   74 (293)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHhCcHHHHH
Confidence            344555566778888877776543     34556655566666655555544333211        11233445555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 015564          122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM  201 (404)
Q Consensus       122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~  201 (404)
                      +.+-+++-..|-.++-+|..+=..-..++-+...|++..++..++||||+++.||+|+++..+||..-.....       
T Consensus        75 ~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g-------  147 (293)
T COG2962          75 LALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG-------  147 (293)
T ss_pred             HHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-------
Confidence            7777788888888888899998889999999999999999999999999999999999999999988644321       


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-CChHHH
Q 015564          202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQ-GHSKAT  280 (404)
Q Consensus       202 ~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~-g~~~~~  280 (404)
                      +.|.  ..    +.-++..++++. .||.+|-+.-.+.....+.+...+    +..++   ..++...  +.. +.+...
T Consensus       148 ~lpw--va----l~la~sf~~Ygl-~RK~~~v~a~~g~~lE~l~l~p~a----l~yl~---~l~~~~~--~~~~~~~~~~  211 (293)
T COG2962         148 SLPW--VA----LALALSFGLYGL-LRKKLKVDALTGLTLETLLLLPVA----LIYLL---FLADSGQ--FLQQNANSLW  211 (293)
T ss_pred             CCcH--HH----HHHHHHHHHHHH-HHHhcCCchHHhHHHHHHHHhHHH----HHHHH---HHhcCch--hhhcCCchHH
Confidence            1222  22    222344566653 567666532233333333332222    11111   1122111  222 222222


Q ss_pred             HHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          281 MLLIFNNAAQGI---LSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       281 ~~~i~~~a~ggl---~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      ++++....+..+   +.+..-|..+=.+-++.++.++..-.+++++++||+++..++++.+.+-.|..+|...
T Consensus       212 ~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         212 LLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            233322222222   2223335566667789999999999999999999999999999999999999888764

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.41  E-value=4.7e-13  Score=130.90  Aligned_cols=221  Identities=15%  Similarity=0.252  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (404)
Q Consensus       121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~  200 (404)
                      .....++.+++...+...++++.+.+.+|+++.+.|++|.++++++.+|++++.-|++++....||.+....+.      
T Consensus        85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~------  158 (316)
T KOG1441|consen   85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL------  158 (316)
T ss_pred             HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc------
Confidence            46677899999999999999999999999999999999999999999999999999999999999998765321      


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCccc-cccCCh
Q 015564          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVT--AIFKGPDNLD-ILQGHS  277 (404)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~--~~~~g~~~~~-~f~g~~  277 (404)
                         ..+..|....+.+.+..++..++.+++++++ +.+..-.|  +.-+-.++++..++..  ...+++...+ ....|+
T Consensus       159 ---~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~-~~~~~~~~--ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~  232 (316)
T KOG1441|consen  159 ---SFNLFGFISAMISNLAFALRNILSKKLLTSK-GESLNSMN--LLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWF  232 (316)
T ss_pred             ---cccHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccccCchH--HHHHhhhHHHHHHhcchHhhhcccceeeeeccccc
Confidence               2456799999999999999999999999743 22332223  3223333333322211  0123321100 112343


Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015564          278 KATMLLIFNNA---AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK  353 (404)
Q Consensus       278 ~~~~~~i~~~a---~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~  353 (404)
                      ...+..+++..   ..++....++...++++-..+..+.-++.++.|+++|++++|+...+|+++-+.|+++|++...+
T Consensus       233 ~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~  311 (316)
T KOG1441|consen  233 VTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK  311 (316)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence            33333333321   12345556677777887777777777888899999999999999999999999999999995433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.33  E-value=8.7e-11  Score=114.90  Aligned_cols=224  Identities=13%  Similarity=0.179  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 015564          122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAM  201 (404)
Q Consensus       122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~  201 (404)
                      ...-+.+.++.|.....||.+.+.+..++++++.=+||-.++.++.+||++..+.+++++.+.||+++...+..++++..
T Consensus       162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~  241 (416)
T KOG2765|consen  162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP  241 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence            44556788899999999999999999999999999999999999999999999999999999999999877643332211


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCccccccCCh
Q 015564          202 GLPVAMGAYIYTLIFITVPSMASVFNEYALKSQ-YDTSIYLQNLFLYGYG---AIFNFLGILVTAIFKGPDNLDILQGHS  277 (404)
Q Consensus       202 ~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~-~~~s~~~~n~~l~~~g---~l~~~~~~l~~~~~~g~~~~~~f~g~~  277 (404)
                      . .....|.++.+++++..|.+.+..++-..++ .+.++   ++++.+.|   .++.-|.+++-..+ +.+   -|+-++
T Consensus       242 a-~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi---~lffGfvGLfnllllwP~l~iL~~~-~~e---~F~lP~  313 (416)
T KOG2765|consen  242 A-SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDI---QLFFGFVGLFNLLLLWPPLIILDFF-GEE---RFELPS  313 (416)
T ss_pred             c-cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccH---HHHHHHHHHHHHHHHhHHHHHHHHh-ccC---cccCCC
Confidence            1 1235799999999998888877776655444 23333   23334444   33333333222223 321   233333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccccc
Q 015564          278 KATMLLIFNNAAQGILSCFFLK-----YADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLS  352 (404)
Q Consensus       278 ~~~~~~i~~~a~ggl~vs~v~k-----ya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~  352 (404)
                      ......++..++-|.+++=.+|     ..++.+.+.+-++++.++.+...++=|.++|+.+++|...|+.|-++.+.+.+
T Consensus       314 ~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  314 STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            3333334444455656663333     24566666777788899999999999999999999999999999888776543


Q ss_pred             c
Q 015564          353 K  353 (404)
Q Consensus       353 ~  353 (404)
                      .
T Consensus       394 ~  394 (416)
T KOG2765|consen  394 N  394 (416)
T ss_pred             c
Confidence            3

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.32  E-value=3.3e-10  Score=108.25  Aligned_cols=263  Identities=17%  Similarity=0.199  Sum_probs=174.3

Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccCh
Q 015564           66 DGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNP  145 (404)
Q Consensus        66 ~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~  145 (404)
                      ++.++|+ .-++-+..++|+.++.......+.+.. ..+...+   |....|   +++..|+.-++.-.+..++++|++.
T Consensus        39 ~~~f~fP-Lf~ts~h~~v~flfa~~~~~l~~~~~~-r~r~~~s---w~~~Lr---~~aPtalata~DIGLSN~sl~yVtl  110 (349)
T KOG1443|consen   39 TKNFHFP-LFVTSLHLAVKFLFAALSRRLYQCSVP-RARVVLS---WRDYLR---RLAPTALATALDIGLSNWSLEYVTL  110 (349)
T ss_pred             hcCcCCc-hHHHHHHHHHHHHHHHHHHHHHhccCC-ccccCCc---HHHHHH---Hhhhhhhhhhcccccccceeeeeee
Confidence            4446665 346678899999888665332222111 1122222   223333   5666777777888999999999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHH
Q 015564          146 ATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASV  225 (404)
Q Consensus       146 ~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~V  225 (404)
                      +.|.+.++..++|+-+|+.++-=||.++.=.+-+++..+|+.+..+++.+         .+..|.++++++++++|+...
T Consensus       111 SlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq---------f~i~Gf~lv~~aS~~sGlRW~  181 (349)
T KOG1443|consen  111 SLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ---------FNIEGFFLVLAASLLSGLRWA  181 (349)
T ss_pred             eeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc---------eeehhHHHHHHHHHhhhhhHH
Confidence            99999999999999999999988999999889999999999998776531         344699999999999999999


Q ss_pred             HHHHHhhhcC--CcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cccccCChH-HHHHHHHHHHHHHHHHHHHHH
Q 015564          226 FNEYALKSQY--DTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN---LDILQGHSK-ATMLLIFNNAAQGILSCFFLK  299 (404)
Q Consensus       226 y~ekllk~~~--~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~---~~~f~g~~~-~~~~~i~~~a~ggl~vs~v~k  299 (404)
                      +.++++++++  .+++.....++.-+-.+..+   .....+||+..   ...|+.++. ..+-.+...+.||.+ ++++-
T Consensus       182 ~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll---~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~l-aF~l~  257 (349)
T KOG1443|consen  182 FTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLL---PLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLL-AFLLE  257 (349)
T ss_pred             HHHHHHhcCccccCCCeeeHHHhhhHHHHHHH---HHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHH-HHHHH
Confidence            9999999852  12222222222222222212   22334677631   122322222 233344445555543 33333


Q ss_pred             Hh--------hhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          300 YA--------DAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       300 ya--------~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                      ..        +.++-+.+--..-+.+.+++..+.+++++..-++|..+...|+..|..
T Consensus       258 ~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  258 FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence            22        333333444345578889999999999999999999999999988844

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.31  E-value=1.6e-09  Score=105.93  Aligned_cols=208  Identities=16%  Similarity=0.162  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHh-hHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHHhhccCCCCCC
Q 015564          123 AVPAFLYAINNYLKFIMQLYFNPATVKMLSN-LKVLVIAVLLKIIMRRRFSIIQ----WEALALLLIGISVNQLRSLPEG  197 (404)
Q Consensus       123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q-~k~l~tal~s~l~L~ekls~~q----wlal~Ll~~Gv~lv~~~~~~~~  197 (404)
                      .+.+++..+.|.++|.+.+++..++...+.+ +.+++.++++.+++|||.++++    +.|+++.++|+.++...+..+.
T Consensus        63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~  142 (290)
T TIGR00776        63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA  142 (290)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc
Confidence            3345678999999999999999999999999 9999999999999999999999    9999999999988765432111


Q ss_pred             CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 015564          198 STAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYL---QNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQ  274 (404)
Q Consensus       198 ~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~---~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~  274 (404)
                      . .........|++++++++++.++..+..|+. + .  ++...   +..-+.+.+++++.+.     ....+     +.
T Consensus       143 ~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~--~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~-----~~  207 (290)
T TIGR00776       143 G-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V--DGLSVLLPQAIGMVIGGIIFNLGH-----ILAKP-----LK  207 (290)
T ss_pred             c-cccccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C--CcceehhHHHHHHHHHHHHHHHHH-----hcccc-----hH
Confidence            0 0000111349999999999999988888865 2 2  22222   2222222333322211     00011     11


Q ss_pred             CChHHHHHHHHH---HHHHHHHHHHHHH-HhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHH----HHHHHHHHHHHH
Q 015564          275 GHSKATMLLIFN---NAAQGILSCFFLK-YADAILKKYSSTVATIFTGIASAVLFGHTLTMNFL----LGISIVFISMHQ  346 (404)
Q Consensus       275 g~~~~~~~~i~~---~a~ggl~vs~v~k-ya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~----lG~~lVi~gv~l  346 (404)
                        +...|..++.   .+++..+.....+ +.+.......++..++.+++.++++++|..+..++    +|.++++.|+.+
T Consensus       208 --~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l  285 (290)
T TIGR00776       208 --KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANI  285 (290)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHH
Confidence              1122222221   1222222222334 56666666677788999999999999999999999    999999999866


Q ss_pred             h
Q 015564          347 F  347 (404)
Q Consensus       347 y  347 (404)
                      -
T Consensus       286 ~  286 (290)
T TIGR00776       286 L  286 (290)
T ss_pred             H
Confidence            4

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.6e-09  Score=104.55  Aligned_cols=223  Identities=12%  Similarity=0.180  Sum_probs=148.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCC
Q 015564          119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGS  198 (404)
Q Consensus       119 ~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~  198 (404)
                      ..++..++++|.+.-.-.-.+++|++.+++.++++..|+.||+.-.+++|.|.+..-|.++++..+|......++..   
T Consensus        77 ~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s---  153 (314)
T KOG1444|consen   77 AKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS---  153 (314)
T ss_pred             HHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce---
Confidence            34677888888888888888999999999999999999999999999999999999999999999998876554321   


Q ss_pred             CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccC--C
Q 015564          199 TAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQG--H  276 (404)
Q Consensus       199 ~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g--~  276 (404)
                            ....|+...+..+++.+...+|.|+..+.. +-+-|....    +-.++++|...+.....|+...-.++.  +
T Consensus       154 ------f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-~l~~~~lv~----yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~  222 (314)
T KOG1444|consen  154 ------FNLRGYSWALANCLTTAAFVVYVKKSVDSA-NLNKFGLVF----YNNLLSLPPLLILSFITGELDALSLNFDNW  222 (314)
T ss_pred             ------ecchhHHHHHHHHHHHHHHHHHHHHhhccc-cccceeEEe----ehhHHHHHHHHHHHHHhcchHHHHhhcccc
Confidence                  122488999999999999999999988864 222221111    222222222222222223210000111  1


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccc
Q 015564          277 -SKATMLLIFNNAAQGILSCFF----LKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL  351 (404)
Q Consensus       277 -~~~~~~~i~~~a~ggl~vs~v----~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~  351 (404)
                       ....|..+....+.|..+++.    .++.++..-..........+.+...+++|.+.++.-++|..+-+.|..+|+...
T Consensus       223 ~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~  302 (314)
T KOG1444|consen  223 SDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT  302 (314)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence             123455555555555544433    333333332222234455667777778889999999999999999988888754


Q ss_pred             cccc
Q 015564          352 SKAK  355 (404)
Q Consensus       352 ~~~~  355 (404)
                      .++|
T Consensus       303 ~~~k  306 (314)
T KOG1444|consen  303 FRKK  306 (314)
T ss_pred             hhhc
Confidence            3333

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=1.2e-11  Score=116.24  Aligned_cols=263  Identities=11%  Similarity=0.164  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc--chHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Q 015564           73 PISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPL--LSISTFIQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKM  150 (404)
Q Consensus        73 ~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~v  150 (404)
                      |.-..+.+.++-..+|..+-....+-...-..|-  ++.+    ..|+.+++.+   .|.+.-....+.++|++.+-|++
T Consensus        61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~----t~r~vlplsv---Vfi~mI~fnnlcL~yVgVaFYyv  133 (347)
T KOG1442|consen   61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLA----TARQVLPLSV---VFILMISFNNLCLKYVGVAFYYV  133 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHH----HHHhhcchhh---eeeeehhccceehhhcceEEEEe
Confidence            3445577888888777765332221100001111  2222    2344334333   33322233344799999999999


Q ss_pred             HHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 015564          151 LSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYA  230 (404)
Q Consensus       151 l~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekl  230 (404)
                      -+++-.+|+.++++++||+|-+..-..+..+.++|--+   +.+.|+.   ..+..+.|.++++.++++-|+-++|.+|.
T Consensus       134 gRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l---GvdqE~~---~~~ls~~GvifGVlaSl~vAlnaiytkk~  207 (347)
T KOG1442|consen  134 GRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL---GVDQEGS---TGTLSWIGVIFGVLASLAVALNAIYTKKV  207 (347)
T ss_pred             ccchhhhHHHHhHHhhcccccccccceeehhheehhee---ccccccc---cCccchhhhHHHHHHHHHHHHHHHhhhee
Confidence            99999999999999999999998877777666666433   1122222   12345679999999999999999999988


Q ss_pred             hhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHH----HHhhhHHH
Q 015564          231 LKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQGILSCFFL----KYADAILK  306 (404)
Q Consensus       231 lk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~a~ggl~vs~v~----kya~~i~k  306 (404)
                      +-.- ++.+|...++...++.++.+|.+++.+-++.  -.++-+-+.++.|.+....++.|..++++.    |..++++.
T Consensus       208 l~~v-~~~iw~lt~ynnv~a~lLflpll~lnge~~~--v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplTh  284 (347)
T KOG1442|consen  208 LPPV-GDCIWRLTAYNNVNALLLFLPLLILNGEFQA--VVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTH  284 (347)
T ss_pred             cccc-cCeehhhHHHHHHHHHHHHHHHHHHcchHHH--HcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEeccccee
Confidence            7654 5789999999999999988887664321111  122334456778888888888888777665    55677777


Q ss_pred             HHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccc
Q 015564          307 KYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL  351 (404)
Q Consensus       307 ~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~  351 (404)
                      +...+..-..-.++++.+++|..+..-|-|-.+|+.|..+|....
T Consensus       285 nISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk  329 (347)
T KOG1442|consen  285 NISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK  329 (347)
T ss_pred             eecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence            766666677778889999999999999999999999999999853

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.13  E-value=1.6e-11  Score=114.27  Aligned_cols=213  Identities=14%  Similarity=0.222  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (404)
Q Consensus       121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~  200 (404)
                      .|.+.|+...-.|.+.-.|.+|.+....+++-.-.++.+.+++|++||.|+...|..+++....||.++...+...++..
T Consensus        80 hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~a  159 (336)
T KOG2766|consen   80 HYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRA  159 (336)
T ss_pred             HhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccccc
Confidence            38888888899999999999999999999999999999999999999999999999999999999999877654333322


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHH
Q 015564          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKAT  280 (404)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~  280 (404)
                      .| ..+..|+.+++.++.+.|.+++..|.+.|+-   +.....-++.+||.+++.+-++    ++...  ----+|++..
T Consensus       160 gg-snp~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i----~~~~~--~~tl~w~~~i  229 (336)
T KOG2766|consen  160 GG-SNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFI----FERHH--VSTLHWDSAI  229 (336)
T ss_pred             CC-CCCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHh----hhccc--eeeEeehHHH
Confidence            12 2334689999999999999999999999974   4555666889999998876533    22210  0012333222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          281 MLLIFNNAAQGILSCFFLKYADAILK-------KYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       281 ~~~i~~~a~ggl~vs~v~kya~~i~k-------~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                         ..+.. +.+.+...+...+-+.|       +...-.+-.++.++  ..||-+.+|..++..+.+..|.++|..
T Consensus       230 ---~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~  299 (336)
T KOG2766|consen  230 ---FLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST  299 (336)
T ss_pred             ---HHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence               11211 22333333333333333       22222333444444  678999999999999999999999943

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.91  E-value=5.6e-08  Score=85.17  Aligned_cols=138  Identities=14%  Similarity=0.204  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc----CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----cccc-CC--h
Q 015564          209 AYIYTLIFITVPSMASVFNEYALKSQ----YDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNL----DILQ-GH--S  277 (404)
Q Consensus       209 G~ll~L~a~~~sala~Vy~ekllk~~----~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~----~~f~-g~--~  277 (404)
                      |.++++.++++.++..++.|+.+++.    .+.+.+....++...+.++.++..+.   .+++...    .... ..  +
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~---~e~~~~~~~~~~~~~~~~~~~   77 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFL---LEGPQLSSFFSEIFGEELSSD   77 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhhHHHHhhhhhhcch
Confidence            56788999999999999999999983    24455545555566666666555443   3333211    1111 11  2


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          278 KATMLLIFNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       278 ~~~~~~i~~~a~----ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                      ...+..++..++    .......++++.+++..+....+..++.+++|+++|||++|...++|+++.+.|+++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            223333333333    234555778999999999999999999999999999999999999999999999999974

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.71  E-value=1.4e-07  Score=79.62  Aligned_cols=130  Identities=18%  Similarity=0.312  Sum_probs=99.4

Q ss_pred             HHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHH
Q 015564           48 GDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAF  127 (404)
Q Consensus        48 ~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~  127 (404)
                      .+++++++-+++-|.--++    -+|...-+.+.++-++++..+++..++.+..++..          .|......+-++
T Consensus        10 LsA~fa~L~~iF~KIGl~~----vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~----------~k~~lflilSGl   75 (140)
T COG2510          10 LSALFAGLTPIFAKIGLEG----VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG----------PKSWLFLILSGL   75 (140)
T ss_pred             HHHHHHHHHHHHHHHhccc----cCccHHHHHHHHHHHHHHHHHHHhcCceecccccC----------cceehhhhHHHH
Confidence            3556677777777654332    44666778899999988888888776655432211          122223444456


Q ss_pred             HHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Q 015564          128 LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (404)
Q Consensus       128 ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~  191 (404)
                      .-.+.-.++|.|++.=+++-..=+.++.+++++++++++||||++..||+++++..+|++++..
T Consensus        76 a~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          76 AGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            6668889999999999999999999999999999999999999999999999999999988753

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.71  E-value=4.7e-07  Score=75.92  Aligned_cols=68  Identities=26%  Similarity=0.381  Sum_probs=61.7

Q ss_pred             HHHH-HHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCC
Q 015564          126 AFLY-AINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSL  194 (404)
Q Consensus       126 A~ly-~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~  194 (404)
                      +++. ..++.+.++|+++.| +...++.++.|+++++++++++|||+++++|.++++.++|++++..++.
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            4444 488999999999999 5888999999999999999999999999999999999999999977653

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.67  E-value=2.5e-07  Score=77.29  Aligned_cols=122  Identities=21%  Similarity=0.281  Sum_probs=88.4

Q ss_pred             HhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHHHH-HHH
Q 015564           53 VGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPAFL-YAI  131 (404)
Q Consensus        53 ~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA~l-y~~  131 (404)
                      ++...++.|..-++    +++...++.+.+...+ ...+.....+...    +..+       .++.....+.+++ ..+
T Consensus         3 ~a~~~~~~k~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~   66 (126)
T PF00892_consen    3 WAIYSVFSKKLLKK----ISPLSITFWRFLIAGI-LLILLLILGRKPF----KNLS-------PRQWLWLLFLGLLGTAL   66 (126)
T ss_pred             eeeHHHHHHHHhcc----CCHHHHHHHHHHHHHH-HHHHHHhhccccc----cCCC-------hhhhhhhhHhhccceeh
Confidence            44445555543332    6688888889988876 4433333222110    0011       1122245556666 579


Q ss_pred             HHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564          132 NNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (404)
Q Consensus       132 ~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~  190 (404)
                      .+.+.+.++++.+++..+++.++.|+++++++++++||+++++||.++++.++|+.++.
T Consensus        67 ~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   67 AYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998763

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.58  E-value=3.9e-07  Score=83.83  Aligned_cols=228  Identities=12%  Similarity=0.153  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 015564          121 LLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTA  200 (404)
Q Consensus       121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~  200 (404)
                      ++.+|+++-++--+-.--+++|++.+.|.+.+++.++.+|..-++++|.|++.....+.++..+.-....+.+....+  
T Consensus        70 ~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~--  147 (309)
T COG5070          70 KWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA--  147 (309)
T ss_pred             hhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHH--
Confidence            455666655544444455789999999999999999999999999999999999999999988877666554421111  


Q ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCccccccCChHH
Q 015564          201 MGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILV-TAIFKGPDNLDILQGHSKA  279 (404)
Q Consensus       201 ~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~-~~~~~g~~~~~~f~g~~~~  279 (404)
                      .....--.|++.+...|+.++..-...||..|-....+     +...+|.-++++|.++. +..+++.++.+.-.+++.-
T Consensus       148 ~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d-----~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d  222 (309)
T COG5070         148 FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKD-----FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVD  222 (309)
T ss_pred             HHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccch-----hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChH
Confidence            00001113788888888877765555666655321111     12223445555555443 2234443333333444433


Q ss_pred             H--HHHHHHHHHHH--HHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccccc
Q 015564          280 T--MLLIFNNAAQG--ILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSKAK  355 (404)
Q Consensus       280 ~--~~~i~~~a~gg--l~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~  355 (404)
                      .  |..|....-.|  ...+++.+..++..-...-++...-.++.|.++||++.+...+..+.+=+++..+|.....+++
T Consensus       223 ~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~  302 (309)
T COG5070         223 SLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ  302 (309)
T ss_pred             HHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3  44432222122  2334555555544444444555567788999999999999999999998888778876444433

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.55  E-value=1.5e-06  Score=78.61  Aligned_cols=216  Identities=14%  Similarity=0.104  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcc
Q 015564          126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMGLPV  205 (404)
Q Consensus       126 A~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~~~~  205 (404)
                      +++.+..|+++..|+..++++..+.+..+.-.++=+++++.||.|+...+.++.++...|++++.+.+.. .      ..
T Consensus        60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~-~------a~  132 (290)
T KOG4314|consen   60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE-H------AD  132 (290)
T ss_pred             EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch-h------hh
Confidence            4667788999999999999999999999999999999999999999999999999999999998765431 1      12


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccCChHHHHHHH
Q 015564          206 AMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFN-FLGILVTAIFKGPDNLDILQGHSKATMLLI  284 (404)
Q Consensus       206 ~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~-~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i  284 (404)
                      .+.|+.+.+.++++++++-|.+++...+..-.+.-...-.+.++-.++. +|.++.  .+.|.+.   ++.+....|...
T Consensus       133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL--~~T~VE~---~qsFA~~PWG~l  207 (290)
T KOG4314|consen  133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALIL--AFTGVEH---LQSFAAAPWGCL  207 (290)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHH--HHhchHH---HHHHhhCCchhh
Confidence            4569999999999999999888887765311122222223344444432 333222  1344321   111111123222


Q ss_pred             HHHHH----HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015564          285 FNNAA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK  353 (404)
Q Consensus       285 ~~~a~----ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~  353 (404)
                      +..|.    ..+.+.+-+-...+++.+.....++...+....++-+-..+..++.|.+++++|-.+--.|.+|
T Consensus       208 ~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~  280 (290)
T KOG4314|consen  208 CGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK  280 (290)
T ss_pred             hhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence            21111    1122222222234445445555566677778887777788999999999999997776665333

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.51  E-value=4.3e-06  Score=73.11  Aligned_cols=145  Identities=16%  Similarity=0.262  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhc-cc--CCcccchHHHHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCcchHHHHHHHhhhh
Q 015564           44 FLVVGDCMLVGLQPILVYMS-KV--DGRFKFSPISVNFLTEMTKVLFAIVMLFF-QARHQKVGEKPLLSISTFIQAARNN  119 (404)
Q Consensus        44 ll~~~~~~~~~~~~il~~~s-~~--~~~~~~~~~~~V~l~E~~Kl~is~~~l~~-~~~~~~~~~~~~~~~~~~~~~~r~~  119 (404)
                      ++...+.+..+.+.++++.. ++  .++.+.++....+.......++.....+. |..+... ........+..+..+..
T Consensus         3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~   81 (153)
T PF03151_consen    3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSS-FFSEIFGEELSSDPNFI   81 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-HHHHhhhhhhcchHHHH
Confidence            34445555667766665532 22  12345778888888888888877765443 3322110 00000000000012233


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 015564          120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN  189 (404)
Q Consensus       120 ~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv  189 (404)
                      ......+++..+.|...|..+++.+|.+++++.+.|.+.+.++++++++|+++..|+.++++.++|+.+-
T Consensus        82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            4566678889999999999999999999999999999999999999999999999999999999998763

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.50  E-value=6.8e-05  Score=70.59  Aligned_cols=205  Identities=16%  Similarity=0.055  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 015564          123 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRSLPEGSTAMG  202 (404)
Q Consensus       123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~~~~~~~~~~  202 (404)
                      .+=++.-..-|.++|.+++.+|.++...+-.+-|+..+++    ..||..-.-|+++.++=++..+...++        .
T Consensus        75 ~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~----~sRr~~d~vwvaLAvlGi~lL~p~~~~--------~  142 (292)
T COG5006          75 LAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALL----SSRRLRDFVWVALAVLGIWLLLPLGQS--------V  142 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHH----hccchhhHHHHHHHHHHHHhheeccCC--------c
Confidence            3334555678999999999999999999999999988865    467777777887766555544432211        1


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHH
Q 015564          203 LPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATML  282 (404)
Q Consensus       203 ~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~  282 (404)
                      .+....|..+.+.+..||+.+=+..+|.-+..  ....-...-+ ..+.++.+|.-..   ..++   . +..++.....
T Consensus       143 ~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm-~vAaviv~Pig~~---~ag~---~-l~~p~ll~la  212 (292)
T COG5006         143 WSLDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGM-LVAALIVLPIGAA---QAGP---A-LFSPSLLPLA  212 (292)
T ss_pred             CcCCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHH-HHHHHHHhhhhhh---hcch---h-hcChHHHHHH
Confidence            22345699999999999999877778877543  1221111121 2223333332111   1111   1 1112211100


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          283 ---LIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       283 ---~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                         .++..++-..+=-..++..+.-.-+...++.+.+.++.+++++||.+|..+|+|+..|+.+..-...
T Consensus       213 LgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l  282 (292)
T COG5006         213 LGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL  282 (292)
T ss_pred             HHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence               0111112122222344555544445556678899999999999999999999999999997654333

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.41  E-value=1.5e-05  Score=78.25  Aligned_cols=66  Identities=18%  Similarity=0.294  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564          127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (404)
Q Consensus       127 ~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~  192 (404)
                      +++.+.+.+.+.|+.+.|++..+=+..+.+++.++++..+||||++++.|++.++.++|++++..-
T Consensus        58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            567889999999999999999999999999999999999999999999999999999999876543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.29  E-value=9.7e-05  Score=71.02  Aligned_cols=211  Identities=12%  Similarity=0.122  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHH-HHHhhHHHHHHHHHHHHhCCCCCHHHHH----HHHHHHHHHHhhccCCCC
Q 015564          121 LLAVPAFLYAINNYLKFIMQLYFNPATVK-MLSNLKVLVIAVLLKIIMRRRFSIIQWE----ALALLLIGISVNQLRSLP  195 (404)
Q Consensus       121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~~-vl~q~k~l~tal~s~l~L~ekls~~qwl----al~Ll~~Gv~lv~~~~~~  195 (404)
                      .-.+-+++..+.+.++|.+.+++..+... +-..++++.++++.+++++|.-+..+|.    |++++.+|+.+...++..
T Consensus        47 ~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~  126 (269)
T PF06800_consen   47 VAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK  126 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence            44556689999999999999998876554 4457889999999999999999999987    899999999998776643


Q ss_pred             CCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccC
Q 015564          196 EGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQG  275 (404)
Q Consensus       196 ~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g  275 (404)
                      ++..+ +.....-|++..+++.+...++.+..+. .+    .+.+..-+-. ..|+++....+.   ....   ..+++.
T Consensus       127 ~~~~~-~~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~----~~~~~~~lPq-aiGm~i~a~i~~---~~~~---~~~~~k  193 (269)
T PF06800_consen  127 SDKSS-SKSNMKKGILALLISTIGYWIYSVIPKA-FH----VSGWSAFLPQ-AIGMLIGAFIFN---LFSK---KPFFEK  193 (269)
T ss_pred             ccccc-cccchhhHHHHHHHHHHHHHHHHHHHHh-cC----CChhHhHHHH-HHHHHHHHHHHh---hccc---cccccc
Confidence            32110 0111123666666666655554444333 22    2332211111 123322211111   1111   122333


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHhCCCccH----HHHHHHHHHHHHHH
Q 015564          276 HSKATMLLIFNNAAQGILSCFFLKYADAILKKYS-STVATIFTGIASAVLFGHTLTM----NFLLGISIVFISMH  345 (404)
Q Consensus       276 ~~~~~~~~i~~~a~ggl~vs~v~kya~~i~k~~a-~~~~iv~s~lls~llfge~lt~----~~~lG~~lVi~gv~  345 (404)
                      .++.-.+.=+.-+++.+..-...+..+. ..+|. +-++++++++.++++++|.=+.    ..++|.++|+.|..
T Consensus       194 ~~~~nil~G~~w~ignl~~~is~~~~G~-a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  194 KSWKNILTGLIWGIGNLFYLISAQKNGV-ATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             chHHhhHHHHHHHHHHHHHHHhHHhccc-hhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence            2222222212223444433333332222 22222 2377899999999999998664    46788888887754

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.16  E-value=2.3e-05  Score=65.71  Aligned_cols=68  Identities=10%  Similarity=0.128  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564          123 AVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (404)
Q Consensus       123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~  190 (404)
                      ++-.++|.+...+.-.+++.+|.+.+..+.++.++.+++++++++|||++++||+++.+..+|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            33347789999999999999999999999999999999999999999999999999999999998874

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.16  E-value=5.2e-05  Score=72.08  Aligned_cols=131  Identities=15%  Similarity=0.083  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhH
Q 015564           42 NVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVL  121 (404)
Q Consensus        42 ~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  121 (404)
                      ..++....++.++...+..|...++  ++.++.+....+.++-.++.........+.     .+. +.       ++...
T Consensus       129 G~~~~l~a~~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~-~~-------~~~~~  193 (260)
T TIGR00950       129 GLLLGLGSGISFALGTVLYKRLVKK--EGPELLQFTGWVLLLGALLLLPFAWFLGPN-----PQA-LS-------LQWGA  193 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhc--CCchHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCc-ch-------HHHHH
Confidence            3444455566688887777654432  121122222223444444433333322211     111 11       11112


Q ss_pred             HHHHHH-HHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 015564          122 LAVPAF-LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGIS  187 (404)
Q Consensus       122 ~~vpA~-ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~  187 (404)
                      ....++ ...+...+.+.++++.++++..++..+.|+++++++++++||++++.||.+..+.++|++
T Consensus       194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            333443 356788899999999999999999999999999999999999999999999999999863

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.14  E-value=3.3e-05  Score=64.28  Aligned_cols=118  Identities=19%  Similarity=0.264  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHH-----HHHHHHHHHHHH
Q 015564          219 VPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATM-----LLIFNNAAQGIL  293 (404)
Q Consensus       219 ~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~-----~~i~~~a~ggl~  293 (404)
                      ++|...++.++..++.   ++...+.+-+..+.+ .++....   .+...    ...++...+     ..++..+++..+
T Consensus         2 ~~a~~~~~~k~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
T PF00892_consen    2 SWAIYSVFSKKLLKKI---SPLSITFWRFLIAGI-LLILLLI---LGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL   70 (126)
T ss_pred             eeeeHHHHHHHHhccC---CHHHHHHHHHHHHHH-HHHHHHh---hcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence            4677888899988863   343344444444443 2222221   11110    112222211     112223455566


Q ss_pred             HHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564          294 SCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (404)
Q Consensus       294 vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly  347 (404)
                      ....+|+.+.........+.++++.++++++++|+++..+++|+.+++.|+++.
T Consensus        71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            777889998888888889999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.10  E-value=5.3e-05  Score=76.08  Aligned_cols=145  Identities=14%  Similarity=0.161  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcccC-C--cccchHHHHHHHHHHHHHHHHHHHHH-HHhhcccCC--C--CCcchHHHHH
Q 015564           42 NVFLVVGDCMLVGLQPILVYMSKVD-G--RFKFSPISVNFLTEMTKVLFAIVMLF-FQARHQKVG--E--KPLLSISTFI  113 (404)
Q Consensus        42 ~~ll~~~~~~~~~~~~il~~~s~~~-~--~~~~~~~~~V~l~E~~Kl~is~~~l~-~~~~~~~~~--~--~~~~~~~~~~  113 (404)
                      .+++...+.+.++.+.++.|...++ +  ..++++...-...-++..++++.+.. .|.......  .  .++. ...+.
T Consensus       195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~-~~~~~  273 (350)
T PTZ00343        195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMT-NYTKG  273 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc-ccchH
Confidence            4445555566688888877643222 1  11345554444344555555554433 332110000  0  0000 00000


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564          114 QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (404)
Q Consensus       114 ~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~  190 (404)
                      .   -......-++.|.++|.+.|++++++++.++++...+||+++.++++++++|+++..|+++.++.++|+.+.+
T Consensus       274 ~---~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        274 I---IIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            0   0112334568999999999999999999999999999999999999999999999999999999999998764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.02  E-value=9.5e-05  Score=72.36  Aligned_cols=142  Identities=11%  Similarity=0.107  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHH-----Hh
Q 015564           42 NVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQ-----AA  116 (404)
Q Consensus        42 ~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~  116 (404)
                      ..++....++.++.+.+..|....+  .++++.+..+.+.....+..+.+........      ... ..+.+     ..
T Consensus       146 G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~------~~~-~~~~~~~~~~~~  216 (302)
T TIGR00817       146 GFLSAMISNITFVSRNIFSKKAMTI--KSLDKTNLYAYISIMSLFLLSPPAFITEGPP------FLP-HGFMQAISGVNV  216 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHHHHHHcchH------HHH-HHHHHhhcccCc
Confidence            4455555666788887776533221  1356666666666666555444433221100      000 00000     00


Q ss_pred             hhhhH-HHHHHH-HHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564          117 RNNVL-LAVPAF-LYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (404)
Q Consensus       117 r~~~~-~~vpA~-ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~  192 (404)
                      ...+. ..+.+. .|...|.+.|.+++++++.++++...++|+++++++++++||+++..|+++.++.++|+.+.+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       217 TKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            01111 223333 67777888899999999999999999999999999999999999999999999999999988654

specificities overlap.

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.92  E-value=5.9e-05  Score=63.92  Aligned_cols=127  Identities=16%  Similarity=0.251  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCcch--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHH
Q 015564          210 YIYTLIFITVPSMASVFNEYALKSQYDTSI--YLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNN  287 (404)
Q Consensus       210 ~ll~L~a~~~sala~Vy~ekllk~~~~~s~--~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~  287 (404)
                      .+..+++++++|+..++.+--+++. |++.  .+|+.-+.    ++.....    ...|+...  -...+...|..+...
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~----~~l~~v~----~~~g~~~~--~~~~~~k~~lflilS   73 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVIL----IFLLIVL----LVTGNWQA--GGEIGPKSWLFLILS   73 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHH----HHHHHHH----HhcCceec--ccccCcceehhhhHH
Confidence            3567888899999877555545543 2222  23333221    1111111    12333110  011233344443333


Q ss_pred             HH----HHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564          288 AA----QGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (404)
Q Consensus       288 a~----ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly  347 (404)
                      ++    +-++-...+|..++.........++++++++|++++||++|..+++|..+|.+|..+.
T Consensus        74 Gla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv  137 (140)
T COG2510          74 GLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV  137 (140)
T ss_pred             HHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence            32    2234445556566666667777899999999999999999999999999999987553

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.83  E-value=0.00073  Score=68.13  Aligned_cols=63  Identities=11%  Similarity=0.097  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564          131 INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (404)
Q Consensus       131 ~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~  193 (404)
                      +...++++++++++|+...+...+.|++++++++++|+|++++.|+++.++.+.|+.+++.+.
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence            456678889999999999999999999999999999999999999999999999999987643

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.77  E-value=0.0017  Score=55.85  Aligned_cols=119  Identities=14%  Similarity=0.104  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHH
Q 015564          209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNA  288 (404)
Q Consensus       209 G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~a  288 (404)
                      |+++.++++++.+.+.+..++-+++..+.+....       . +. ....+     .        . +..+.+..+...+
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-------~-~~-~~~~~-----~--------~-p~~~i~lgl~~~~   59 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-------F-IA-ALLAF-----G--------L-ALRAVLLGLAGYA   59 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-------H-HH-HHHHH-----h--------c-cHHHHHHHHHHHH
Confidence            6788888888888888888877766422121110       0 00 00000     0        0 0113344444444


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH--HhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAV--LFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       289 ~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~l--lfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      +.-.+-.+++|..|........+...++..+.++.  +|||++|+.+++|+++|+.|+++-++.
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            44455556677776555444444555666667764  899999999999999999999997764

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.77  E-value=0.0011  Score=64.96  Aligned_cols=141  Identities=19%  Similarity=0.331  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHH--HhhcccCCCCCcchHHHHH-HHhhh
Q 015564           42 NVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFF--QARHQKVGEKPLLSISTFI-QAARN  118 (404)
Q Consensus        42 ~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~--~~~~~~~~~~~~~~~~~~~-~~~r~  118 (404)
                      .++++..+.++.+.+++..+....+  ++-++...++..++..+++.......  .....        +...+. +.+..
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~--~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~--------~~~~f~~~~p~~  224 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKK--YGKSPWELMFYTNLFSLPFLLILLFLLPTGEFR--------SAIRFISAHPSV  224 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhh--------HHHHHHHHhHHH
Confidence            4455555555677777766633322  33456789999999999988777655  22111        001121 22222


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564          119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (404)
Q Consensus       119 ~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~  192 (404)
                      ......-++.-++.....|.-.+..++.+..++..++-+.+.++|.+++++++++.||.++++.+.|..+-...
T Consensus       225 ~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~  298 (303)
T PF08449_consen  225 LLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA  298 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence            22344445555555666677789999999999999999999999999999999999999999999999886543

; GO: 0055085 transmembrane transport

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.77  E-value=0.00092  Score=65.34  Aligned_cols=66  Identities=15%  Similarity=0.121  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564          127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (404)
Q Consensus       127 ~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~  192 (404)
                      +.-.+...+++.++++++++..+++..+.|++.+++++++++|+++..||++.++.+.|+.+....
T Consensus       223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            344567888999999999999999999999999999999999999999999999999999887543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.73  E-value=0.001  Score=64.98  Aligned_cols=64  Identities=22%  Similarity=0.262  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564          129 YAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (404)
Q Consensus       129 y~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~  192 (404)
                      -.++..++++++++.++...+++..+.|++++++++++++|+++..||++.++.++|++.....
T Consensus       219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            3477778899999999999999999999999999999999999999999999999999887554

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.70  E-value=0.002  Score=62.80  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564          129 YAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (404)
Q Consensus       129 y~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~  192 (404)
                      -.+.+.+.+++++++++++..++..+.|+++++++++++||+++..||.+.++.+.|+.+.+..
T Consensus       223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            3467789999999999999999999999999999999999999999999999999999887653

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.67  E-value=0.0014  Score=63.47  Aligned_cols=129  Identities=12%  Similarity=0.003  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH----H
Q 015564          210 YIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI----F  285 (404)
Q Consensus       210 ~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i----~  285 (404)
                      +++.++++++.+...+..|+..+++   +.. + .+.+..+.++..|....  ...+..    +...+...|..+    +
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~-~-~~~~~~~~~~l~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~   71 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE---PDF-L-WWALLAHSVLLTPYGLW--YLAQVG----WSRLPATFWLLLAISAV   71 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch---hHH-H-HHHHHHHHHHHHHHHHH--hcccCC----CCCcchhhHHHHHHHHH
Confidence            4677888899999999998777653   221 1 22223333333332221  000110    111111122222    2


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          286 NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       286 ~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                      ..+.+..+....+++.+........+..++++.++++++++|+++...++|.++++.|+.+-..
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            2333445556667888877777778889999999999999999999999999999999876544

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.60  E-value=0.0006  Score=57.90  Aligned_cols=72  Identities=11%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564          122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (404)
Q Consensus       122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~  193 (404)
                      ..+..++|.+...+...+++++|.+.+.-+ ...-.+.+++.+++++||+++..||+++.+.++|++.+...+
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            455678899999999999999999877666 579999999999999999999999999999999999886543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.59  E-value=0.0039  Score=61.04  Aligned_cols=63  Identities=16%  Similarity=0.148  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564          131 INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (404)
Q Consensus       131 ~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~  193 (404)
                      +...+.+.+++++++.+..++..+.|++.+++++++++|+++..||.+.++.++|+.+...+.
T Consensus       227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            567788889999999999999999999999999999999999999999999999998876543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.59  E-value=0.0013  Score=64.35  Aligned_cols=133  Identities=16%  Similarity=0.186  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhh
Q 015564           38 QRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAAR  117 (404)
Q Consensus        38 ~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r  117 (404)
                      ++++...++.  .+.|+.+.+..|...      +++.+.+|..-.-=++.+..+....+ +    .+|..        .+
T Consensus       151 ~~Gi~~~l~s--g~~y~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~-~----~~~~~--------~~  209 (290)
T TIGR00776       151 KKGILLLLMS--TIGYLVYVVVAKAFG------VDGLSVLLPQAIGMVIGGIIFNLGHI-L----AKPLK--------KY  209 (290)
T ss_pred             hhHHHHHHHH--HHHHHHHHHHHHHcC------CCcceehhHHHHHHHHHHHHHHHHHh-c----ccchH--------HH
Confidence            3455555555  555888777776442      34444433333322223333322221 1    12221        11


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHh-ccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHhhcc
Q 015564          118 NNVLLAVPAFLYAINNYLKFIMQL-YFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQW----EALALLLIGISVNQL  191 (404)
Q Consensus       118 ~~~~~~vpA~ly~~~n~L~f~al~-~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qw----lal~Ll~~Gv~lv~~  191 (404)
                      ..+...+.+++..+.|.+++.+++ +++++++.++.+..|+..++++++++||+.+++|+    .+.++...|+.++..
T Consensus       210 ~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       210 AILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            223445577778899999999999 99999999999999999999999999999999999    999999999888643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.55  E-value=0.00065  Score=58.47  Aligned_cols=68  Identities=15%  Similarity=0.164  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564          126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKI--IMRRRFSIIQWEALALLLIGISVNQLRS  193 (404)
Q Consensus       126 A~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l--~L~ekls~~qwlal~Ll~~Gv~lv~~~~  193 (404)
                      -++|.+...+..++++.+|++.+.-+....+..+++.++.  ++||+++++||+++++.++|+.++..++
T Consensus        55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            3688899999999999999999998888888888888885  8999999999999999999999987543

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.49  E-value=0.0013  Score=54.59  Aligned_cols=70  Identities=14%  Similarity=0.076  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Q 015564          122 LAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (404)
Q Consensus       122 ~~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~  191 (404)
                      ..+..++|.+...+.-.+++.+|.++. .+-...-.+.+++.+++++||++++.|++++.+..+|++....
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            345578899999999999999998665 5556699999999999999999999999999999999988754

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.45  E-value=0.0014  Score=54.81  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564          122 LAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (404)
Q Consensus       122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~  192 (404)
                      ....-++|.+...+...+++.+|.+++.-+ .....+.+++.+++++||+++..|++++.+.++|++.+...
T Consensus        33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            344567888999999999999999877655 66899999999999999999999999999999999998654

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.44  E-value=0.0017  Score=53.62  Aligned_cols=71  Identities=17%  Similarity=0.225  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Q 015564          121 LLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (404)
Q Consensus       121 ~~~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~  191 (404)
                      ...+..+.|.+...+.-.|++++|.+++ .+-...-++.|++.+++++||+++..|++++.++.+|++....
T Consensus        32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            3455677888999999999999998665 6778899999999999999999999999999999999988754

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.33  E-value=0.0025  Score=53.20  Aligned_cols=69  Identities=12%  Similarity=0.056  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564          122 LAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (404)
Q Consensus       122 ~~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~  190 (404)
                      ..+..++|.+...+.-.+++++|.++. .+-...-.+.+++.+++++||++++.||+++.+.++|++...
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            455567888999999999999999665 666779999999999999999999999999999999998763

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.16  E-value=0.015  Score=56.82  Aligned_cols=133  Identities=8%  Similarity=-0.000  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-c-cccccCChHHHHH--H
Q 015564          208 GAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPD-N-LDILQGHSKATML--L  283 (404)
Q Consensus       208 ~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~-~-~~~f~g~~~~~~~--~  283 (404)
                      .|+++.+++++++|..+++.+.. .+   .++.....+=.+++.++.++...    .+++. . ...++.+....+.  .
T Consensus         8 ~g~~~~l~a~~~wg~~~~~~k~~-~~---~~~~~~~~~R~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   79 (296)
T PRK15430          8 QGVLLALAAYFIWGIAPAYFKLI-YY---VPADEILTHRVIWSFFFMVVLMS----ICRQWSYLKTLIQTPQKIFMLAVS   79 (296)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh-cC---CCHHHHHHHHHHHHHHHHHHHHH----HHccHHHHHHHHcCHHHHHHHHHH
Confidence            48889999999999999999653 32   34443333334445443333221    12110 0 0001111111111  1


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015564          284 IFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (404)
Q Consensus       284 i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~  348 (404)
                      .+..++...+..+.+++.+........++.++++.++++++++|+++..+++|.++.+.|+.+..
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            22233344455566788887777888889999999999999999999999999999999987654

>TIGR00688 rarD rarD protein

Probab=97.16  E-value=0.016  Score=55.20  Aligned_cols=132  Identities=10%  Similarity=0.059  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccCChHH-HHHHHH-
Q 015564          209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDN-LDILQGHSKA-TMLLIF-  285 (404)
Q Consensus       209 G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~-~~~f~g~~~~-~~~~i~-  285 (404)
                      |.++++++++++|..++..|. ..+   .++....+.=.+++.++.++....   ...... ..-+...+.. .+..+. 
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   75 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVTL---FRQWAALIERLKRIQKRPLILSLLL   75 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHHH---HcchHHHHHHHhCcccchHHHHHHH
Confidence            678889999999999999887 332   344433333334444432222211   111000 0001111111 111111 


Q ss_pred             ---HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564          286 ---NNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (404)
Q Consensus       286 ---~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly  347 (404)
                         ..+....+....++|.+........++.|+++.+++.++++|+++..+++|..+.+.|+.+-
T Consensus        76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li  140 (256)
T TIGR00688        76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN  140 (256)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence               12233345556678877777777788999999999999999999999999999999997643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.13  E-value=0.0082  Score=57.88  Aligned_cols=121  Identities=15%  Similarity=0.166  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHh
Q 015564           37 KQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAA  116 (404)
Q Consensus        37 k~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~  116 (404)
                      ..+++..+++.  .+.|..+..+.++...      ++. .+++-+.+.++++..++..-.+      ++...        
T Consensus       136 ~~kgi~~Ll~s--tigy~~Y~~~~~~~~~------~~~-~~~lPqaiGm~i~a~i~~~~~~------~~~~~--------  192 (269)
T PF06800_consen  136 MKKGILALLIS--TIGYWIYSVIPKAFHV------SGW-SAFLPQAIGMLIGAFIFNLFSK------KPFFE--------  192 (269)
T ss_pred             hhhHHHHHHHH--HHHHHHHHHHHHhcCC------Chh-HhHHHHHHHHHHHHHHHhhccc------ccccc--------
Confidence            34456555554  4457777777776543      343 3466778888877665443221      11111        


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 015564          117 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALA  180 (404)
Q Consensus       117 r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~  180 (404)
                      |..++=.++++++.+.|.+.+++.+.+-.++.-.+.|+.++...+-+.++|||+=+++++....
T Consensus       193 k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~  256 (269)
T PF06800_consen  193 KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL  256 (269)
T ss_pred             cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence            1233457889999999999999999999999999999999999999999999999999886543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.08  E-value=0.005  Score=51.54  Aligned_cols=60  Identities=8%  Similarity=0.092  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015564          289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (404)
Q Consensus       289 ~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~  348 (404)
                      +...+...++|..+-...-...+++++++.++|+++|||++|..+++|.++++.|+.+-.
T Consensus        49 l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         49 LAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            344556677777664444444448899999999999999999999999999999987543

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.00  E-value=0.0091  Score=49.93  Aligned_cols=62  Identities=19%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          289 AQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       289 ~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      +.-.+.+.++|+.+ ++.-...+....+.+++.|+++|||++|+..++|+++++.|+.+-+..
T Consensus        42 ~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            33345566777655 222233455688999999999999999999999999999999877653

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.00  E-value=0.0081  Score=51.00  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          286 NNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       286 ~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      ..++.-.+.+.++|+.+ ++.-...+...++.+.+.|+++|||++|+..++|+++++.|+..-+..
T Consensus        39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            33444456667777765 333344456788999999999999999999999999999998876553

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.98  E-value=0.0019  Score=54.20  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 015564          119 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN  189 (404)
Q Consensus       119 ~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv  189 (404)
                      +++|.+|=++|.....++|+.++..|.+...-+ +++..++|++.++++.+|..+++.|+++.+.++|+.+.
T Consensus        41 n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   41 NPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            357999999999999999999999999877665 69999999999999999999999999999999998763

Many members are annotated as potential transmembrane proteins.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.0067  Score=59.25  Aligned_cols=68  Identities=13%  Similarity=0.289  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564          126 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (404)
Q Consensus       126 A~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~  193 (404)
                      -+.+.+.+.+.|.|+.+-|++...-+..+.++..|+++..+||||++..-.++.++.++|-.++....
T Consensus        71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence            35677899999999999999999999999999999999999999999999999999999987765543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.84  E-value=0.0026  Score=62.84  Aligned_cols=144  Identities=13%  Similarity=0.139  Sum_probs=94.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHH-HHHHHHhhcccC--CCCCcchHHHH
Q 015564           36 SKQRVLNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAI-VMLFFQARHQKV--GEKPLLSISTF  112 (404)
Q Consensus        36 ~k~~~l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~-~~l~~~~~~~~~--~~~~~~~~~~~  112 (404)
                      -.+.++..-+  ...+.++.|.++.+....+.+++.++.......--+.+++.+ .+...+.+....  ...+. +   +
T Consensus       160 fn~~G~i~a~--~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~-~---~  233 (316)
T KOG1441|consen  160 FNLFGFISAM--ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPW-F---V  233 (316)
T ss_pred             ccHHHHHHHH--HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecccc-c---h
Confidence            3444444333  334447778887775444333556665544333333333333 332222211110  00111 1   0


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Q 015564          113 IQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQ  190 (404)
Q Consensus       113 ~~~~r~~~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~  190 (404)
                           +.+.+..-++++.++|...|..+.+++|-|+++....|-+.+.+.+++++++++++.|.++..+.++|+.+-.
T Consensus       234 -----~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  234 -----TFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence                 1234455559999999999999999999999999999999999999999999999999999999999998853

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.83  E-value=0.017  Score=48.17  Aligned_cols=60  Identities=25%  Similarity=0.296  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          289 AQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       289 ~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                      .+.....+..+|.+. .......+.++++.+++.++|+|+++...++|..+++.|+.+-..
T Consensus        47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            344555677788885 555777789999999999999999999999999999999876554

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0056  Score=57.94  Aligned_cols=59  Identities=20%  Similarity=0.258  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Q 015564          131 INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVN  189 (404)
Q Consensus       131 ~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv  189 (404)
                      +-..|-.++++.+|..+|.++.++.|.+.|+..+++|+|++|..||+++.+...+++=.
T Consensus       222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            55677888999999999999999999999999999999999999999999988876533

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.56  E-value=0.01  Score=48.04  Aligned_cols=59  Identities=10%  Similarity=0.271  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 015564          124 VPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALL  182 (404)
Q Consensus       124 vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll  182 (404)
                      ..-.+|.+...+.-.+++++|.++. .+...+..+.+++.+.+++||+++..||.++.+.
T Consensus        34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3345899999999999999999777 5556799999999999999999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.51  E-value=0.13  Score=48.80  Aligned_cols=71  Identities=21%  Similarity=0.271  Sum_probs=62.3

Q ss_pred             HHHHHHHHH-HHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccC
Q 015564          122 LAVPAFLYA-INNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLR  192 (404)
Q Consensus       122 ~~vpA~ly~-~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~  192 (404)
                      ....+++-. +...+.+.+++..++.....+..+.|++.+++++++++|+++..||.+.++.+.|+.+...+
T Consensus       217 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            344444444 68889999999999999999999999999999999999999999999999999999988654

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.50  E-value=0.16  Score=42.46  Aligned_cols=62  Identities=18%  Similarity=0.095  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564          286 NNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (404)
Q Consensus       286 ~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly  347 (404)
                      ..++.-.+.+.++|+.+ ++.-...+....+.+++.++++|||++|+..++|+++++.|+..-
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            33444556777788765 333345566778999999999999999999999999999998764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.37  E-value=0.037  Score=54.52  Aligned_cols=115  Identities=11%  Similarity=0.083  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHH
Q 015564          207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFN  286 (404)
Q Consensus       207 ~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~  286 (404)
                      .+|.++.+.++++.+.+.++.|+-.++.++.+..... .      .   ..              .+.  ++..|.-++.
T Consensus         6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-~------~---~~--------------~l~--~~~W~~G~~~   59 (300)
T PF05653_consen    6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-G------G---RS--------------YLR--RPLWWIGLLL   59 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-h------h---hH--------------HHh--hHHHHHHHHH
Confidence            4699999999999999888888877664221111000 0      0   00              001  1222333344


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh
Q 015564          287 NAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQF  347 (404)
Q Consensus       287 ~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly  347 (404)
                      .++|.+.....+.+++..+..+..+++++++.+++.++++|+++...++|.++++.|..+-
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~li  120 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLI  120 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheee
Confidence            4556665566778889888888888999999999999999999999999999999987543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.30  E-value=0.044  Score=45.36  Aligned_cols=61  Identities=18%  Similarity=0.257  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          289 AQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       289 ~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                      +.-.+.+..+|+.+ .+.-+..+...++.+++.++++|||++|...++|..+++.|+..-+.
T Consensus        42 ~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          42 LSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            33446677788766 33335556788899999999999999999999999999999876554

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.28  E-value=1.4  Score=44.12  Aligned_cols=102  Identities=12%  Similarity=0.050  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCC---CH----HHHHHHHHHHHHHHhhcc---
Q 015564          123 AVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRF---SI----IQWEALALLLIGISVNQL---  191 (404)
Q Consensus       123 ~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekl---s~----~qwlal~Ll~~Gv~lv~~---  191 (404)
                      .+-+++..+.|.+++.+++++..+.. -+-..+..+..+++..++++|--   +.    .-..++++..+|+++...   
T Consensus        77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~  156 (345)
T PRK13499         77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ  156 (345)
T ss_pred             HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33457888999999999999988665 45566889999999999998643   33    345678888889999877   


Q ss_pred             -CCCCCCCCCCCCccchHHHHHHHHHHHHHHHHH
Q 015564          192 -RSLPEGSTAMGLPVAMGAYIYTLIFITVPSMAS  224 (404)
Q Consensus       192 -~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~  224 (404)
                       ++..++.++.+.....-|+++.+++.+.+++.+
T Consensus       157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             hcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence             433211100011112348888888877777666

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.26  E-value=0.052  Score=44.99  Aligned_cols=61  Identities=13%  Similarity=0.160  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhc
Q 015564          288 AAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFF  348 (404)
Q Consensus       288 a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~  348 (404)
                      ++.-.+.+.++|+.+ .+.-+..+...++.+.+.|+++|||++|+..++|+.+++.|+..-+
T Consensus        40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            344456667777665 3433555667889999999999999999999999999999987654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=95.78  E-value=0.41  Score=47.83  Aligned_cols=62  Identities=13%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcc
Q 015564          288 AAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       288 a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                      ..+..++...++|.+-.......+.+++++.++|++++++++++.+++|+.++++|+.+-..
T Consensus        90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~  151 (334)
T PF06027_consen   90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV  151 (334)
T ss_pred             HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence            34566777888888876667788899999999999999999999999999999999776544

Some of the sequences in this family are annotated as putative membrane proteins.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=95.50  E-value=1.1  Score=38.85  Aligned_cols=130  Identities=15%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHHHH
Q 015564          211 IYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNAAQ  290 (404)
Q Consensus       211 ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~a~g  290 (404)
                      ++.+.+..+-++.+..+-++.++-  .+++.-.+.-+..|.+...+..+.   .+++ ....+.+.+||.|.-=+..++.
T Consensus         4 lla~~aG~~i~~q~~~N~~L~~~~--gs~~~as~i~~~~G~i~~~i~~~~---~~~~-~~~~~~~~p~w~~lGG~lG~~~   77 (138)
T PF04657_consen    4 LLALLAGALIALQAAFNGQLGKAL--GSPLVASFISFGVGFILLLIILLI---TGRP-SLASLSSVPWWAYLGGLLGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHH---hccc-ccchhccCChHHhccHHHHHHH
Confidence            455666666777888888877764  345555555555666655443332   2322 2222344455555421122222


Q ss_pred             HHHHHHHHHHhhhHH-HHHHHhhHHHHHHHHHHH-Hh---CCCccHHHHHHHHHHHHHHHH
Q 015564          291 GILSCFFLKYADAIL-KKYSSTVATIFTGIASAV-LF---GHTLTMNFLLGISIVFISMHQ  346 (404)
Q Consensus       291 gl~vs~v~kya~~i~-k~~a~~~~iv~s~lls~l-lf---ge~lt~~~~lG~~lVi~gv~l  346 (404)
                      -....+.+...+... .......+++.+.+++.+ +|   .++++...++|..+++.|+++
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            222333333333222 233344556677777765 44   468999999999999999864

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=95.25  E-value=0.17  Score=48.63  Aligned_cols=65  Identities=18%  Similarity=0.112  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHH-HhCCCc-----cHHHHHHHHHHHHHHHHhcccc
Q 015564          287 NAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAV-LFGHTL-----TMNFLLGISIVFISMHQFFSSL  351 (404)
Q Consensus       287 ~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~l-lfge~l-----t~~~~lG~~lVi~gv~ly~~~~  351 (404)
                      -+.|++++-.++|..+ ++--....+.+.+.....|-+ +||.++     .+.-.+|++++++|..+|...+
T Consensus        65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik  136 (254)
T PF07857_consen   65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK  136 (254)
T ss_pred             hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence            3456665556666554 333345555666666666644 776543     3456899999999998887643

The region concerned is approximately 280 residues long.

>TIGR00803 nst UDP-galactose transporter

Probab=95.07  E-value=0.03  Score=52.23  Aligned_cols=66  Identities=9%  Similarity=0.080  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 015564          122 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGIS  187 (404)
Q Consensus       122 ~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~  187 (404)
                      ...+.++.+++..+....+++.|+.+..+...+.++++++++.++++++++..||++..+.+.|+.
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            445556777888899999999999999999999999999999999999999999999999998864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=94.90  E-value=0.13  Score=41.59  Aligned_cols=50  Identities=16%  Similarity=0.234  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhhhHH-HHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 015564          291 GILSCFFLKYADAIL-KKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIV  340 (404)
Q Consensus       291 gl~vs~v~kya~~i~-k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lV  340 (404)
                      -.+.+.++|+.+-.. -...+...++.+.+.|+++|||++|..+++|+.+|
T Consensus        43 ~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   43 FYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            345666777765322 24445678899999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=94.40  E-value=2  Score=41.81  Aligned_cols=128  Identities=19%  Similarity=0.227  Sum_probs=84.4

Q ss_pred             HHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHH-HHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHHHHH
Q 015564           48 GDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTK-VLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLAVPA  126 (404)
Q Consensus        48 ~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~K-l~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~vpA  126 (404)
                      ..|+.|+.++.++|..+.|      +.+- ++-|.+= +.+|++.++.......     ...    ....+.++.+..-+
T Consensus       155 ~la~sf~~Ygl~RK~~~v~------a~~g-~~lE~l~l~p~al~yl~~l~~~~~-----~~~----~~~~~~~~LLv~aG  218 (293)
T COG2962         155 ALALSFGLYGLLRKKLKVD------ALTG-LTLETLLLLPVALIYLLFLADSGQ-----FLQ----QNANSLWLLLVLAG  218 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCc------hHHh-HHHHHHHHhHHHHHHHHHHhcCch-----hhh----cCCchHHHHHHHhh
Confidence            3466788888888776654      3333 5555555 4456555544332110     000    00111222223333


Q ss_pred             HHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcc
Q 015564          127 FLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQL  191 (404)
Q Consensus       127 ~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~  191 (404)
                      ..-++--.++-.|-+.+|.++.-++....|...-+++++++||.++.-|+.+-++.-+|+++...
T Consensus       219 ~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         219 LVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI  283 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            33444445656678889999999999999999999999999999999999999999999888754

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.33  E-value=0.11  Score=43.72  Aligned_cols=66  Identities=17%  Similarity=0.316  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Q 015564          281 MLLIFNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQ  346 (404)
Q Consensus       281 ~~~i~~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~l  346 (404)
                      +...+.+..|.+.-.+.+..+| ++....+++++.++|.+.++++.+|..+...++|+.+|+.|+.+
T Consensus        45 ~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   45 IIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            3344445456655556666676 44445667899999999999999888899999999999999764

Many members are annotated as potential transmembrane proteins.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.30  E-value=0.32  Score=45.82  Aligned_cols=69  Identities=14%  Similarity=0.272  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 015564          120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV  188 (404)
Q Consensus       120 ~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~l  188 (404)
                      |-+...|+.-.+...+.|....+..|-+-++...+.-+||.+.|+++++..++.+||++-++.+.|...
T Consensus       242 ~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  242 WDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence            445667777788889999999999999999999999999999999999999999999999999998765

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.30  E-value=0.76  Score=46.10  Aligned_cols=136  Identities=15%  Similarity=0.102  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHH--
Q 015564          207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLI--  284 (404)
Q Consensus       207 ~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i--  284 (404)
                      ..|++..+++++|+|--++-++| .|+-   + | +++|. ..+....++..+....+.-+...+.++..+...+...  
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w---~-w-E~~W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-VKKW---S-W-ETMWS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-cCCC---c-h-hHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence            45889999999998876766655 4432   1 2 22233 2232211111110011111111122333444433322  


Q ss_pred             --HHHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhCCCc---c----HHHHHHHHHHHHHHHHhcc
Q 015564          285 --FNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFGHTL---T----MNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       285 --~~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfge~l---t----~~~~lG~~lVi~gv~ly~~  349 (404)
                        +.-++|++.....+||.+ +..-...+.++.+++++++.+++||-.   +    ...++|.+++++|+.+-..
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence              234678888888999987 344456677888999999999998643   2    3468899999999887665

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=93.91  E-value=0.44  Score=45.51  Aligned_cols=67  Identities=22%  Similarity=0.196  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccccc
Q 015564          287 NAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSLSK  353 (404)
Q Consensus       287 ~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~  353 (404)
                      -++...+....+++.|+.+-.......+++|+++++++++.+++..+|++..+...|+.+.......
T Consensus        27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            3455666677889999888777777899999999999999999999999999999999887664433

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.84  E-value=0.65  Score=45.39  Aligned_cols=134  Identities=18%  Similarity=0.225  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhh-h
Q 015564           41 LNVFLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARN-N  119 (404)
Q Consensus        41 l~~ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~  119 (404)
                      +.+.-+..+.+....|.-+-+      ++.-++....+-.++...+.+..-++-++..     .+-.   .|...-++ .
T Consensus       176 Ll~~~L~fDgfTn~tQd~lf~------~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~-----~~av---~F~~~hp~~~  241 (327)
T KOG1581|consen  176 LLFGYLLFDGFTNATQDSLFK------KYKVSSLHMMFGVNLFSAILNGTYLILQGHL-----LPAV---SFIKEHPDVA  241 (327)
T ss_pred             HHHHHHHHHhhHHhHHHHHhc------cCCccHhHHHHHHHHHHHHHHHHhhhcCCCC-----chHH---HHHHcChhHH
Confidence            333444445555666654443      3456677788889999988887765433221     1111   12211111 1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 015564          120 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV  188 (404)
Q Consensus       120 ~~~~vpA~ly~~~n~L~f~al~~l~~~t~~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~l  188 (404)
                      +-+.+-+.+-++..++.|+-++...+-++.++.-++=+++.++|.+..+++++..||.++.+.+.|+.+
T Consensus       242 ~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  242 FDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            235556677778888889999999999999999999999999999999999999999999998888766

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=91.79  E-value=0.039  Score=52.20  Aligned_cols=130  Identities=15%  Similarity=0.288  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHhhhhhHHH
Q 015564           44 FLVVGDCMLVGLQPILVYMSKVDGRFKFSPISVNFLTEMTKVLFAIVMLFFQARHQKVGEKPLLSISTFIQAARNNVLLA  123 (404)
Q Consensus        44 ll~~~~~~~~~~~~il~~~s~~~~~~~~~~~~~V~l~E~~Kl~is~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  123 (404)
                      ++-..-.+.++++|...  .|.+|+ ++..+   .=+-+-.+++++.+++.. +       |......       ...-.
T Consensus         5 liaL~P~l~WGsip~v~--~k~GG~-p~qQ~---lGtT~GALifaiiv~~~~-~-------p~~T~~~-------~iv~~   63 (288)
T COG4975           5 LIALLPALGWGSIPLVA--NKFGGK-PYQQT---LGTTLGALIFAIIVFLFV-S-------PELTLTI-------FIVGF   63 (288)
T ss_pred             HHHHHHHHHhcccceee--eecCCC-hhHhh---hhccHHHHHHHHHHheee-c-------Cccchhh-------HHHHH
Confidence            33344566788888554  454443 33332   345556677777665541 1       1111111       11334


Q ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHhhccCCC
Q 015564          124 VPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQW----EALALLLIGISVNQLRSL  194 (404)
Q Consensus       124 vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qw----lal~Ll~~Gv~lv~~~~~  194 (404)
                      +-+++..+....+|-|.+++..+.+.=+ ..++++-+.+++++.++|--+..|.    .|++++.+|+.+..+++.
T Consensus        64 isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          64 ISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             HhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            4567888889999999999887766544 5578899999999999999998885    588899999988877654

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.58  E-value=12  Score=33.13  Aligned_cols=133  Identities=14%  Similarity=0.147  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHHHHHHH
Q 015564          209 AYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLLIFNNA  288 (404)
Q Consensus       209 G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~i~~~a  288 (404)
                      ..+..+.+..+..+.+..+-++.+.- + ++..-...-+..|++......+   ..++..........+||.|.-   ..
T Consensus         6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~-~-spl~As~isf~vGt~~L~~l~l---~~~~~~~~a~~~~~pwW~~~G---G~   77 (150)
T COG3238           6 YLLFAILAGALLPLQAAINGRLARYL-G-SPLLASLISFLVGTVLLLILLL---IKQGHPGLAAVASAPWWAWIG---GL   77 (150)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHHHHHH---HhcCCCchhhccCCchHHHHc---cc
Confidence            34555666667777777787777654 2 3322222222334433222221   223332222223445555542   12


Q ss_pred             HHHHHHHHHHH----HhhhHHHHHHHhhHHHHHHHHHHH-HhC---CCccHHHHHHHHHHHHHHHHhcc
Q 015564          289 AQGILSCFFLK----YADAILKKYSSTVATIFTGIASAV-LFG---HTLTMNFLLGISIVFISMHQFFS  349 (404)
Q Consensus       289 ~ggl~vs~v~k----ya~~i~k~~a~~~~iv~s~lls~l-lfg---e~lt~~~~lG~~lVi~gv~ly~~  349 (404)
                      +|.+++..-+.    ...........+.+++.+.++.-+ +||   .+++..-++|+++++.|+++...
T Consensus        78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            33343333332    222333344445566666666655 443   57999999999999999776554

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.52  E-value=0.23  Score=48.78  Aligned_cols=68  Identities=13%  Similarity=0.127  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Q 015564          278 KATMLLIFNNAAQGILSCFFLKYADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMH  345 (404)
Q Consensus       278 ~~~~~~i~~~a~ggl~vs~v~kya~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~  345 (404)
                      +..|.-++..++|-+.....|-++++++.+...+++++.+++++..+++|.+++.-.+|.++.+.|..
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst  132 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGST  132 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccE
Confidence            45567788888898888888999999999999999999999999999999999999999999999854

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=86.65  E-value=15  Score=36.70  Aligned_cols=136  Identities=13%  Similarity=0.139  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCccccccCChHHHHHH-
Q 015564          207 MGAYIYTLIFITVPSMASVFNEYALKSQYDTSIYLQNLFL--YGYGAIFNFLGILVTAIFKGPDNLDILQGHSKATMLL-  283 (404)
Q Consensus       207 ~~G~ll~L~a~~~sala~Vy~ekllk~~~~~s~~~~n~~l--~~~g~l~~~~~~l~~~~~~g~~~~~~f~g~~~~~~~~-  283 (404)
                      ..|++...++++++|..++=.+|+ |+     --.+++|+  .+++.++ +|.+..  ...-|+..+.+...+..++.. 
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkv-k~-----WsWEs~Wlv~gi~swli-~P~~~a--~l~ip~~~~i~~~~~~~~l~~~   76 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKV-KG-----WSWESYWLVQGIFSWLI-VPWLWA--LLAIPDFFSIYSATPASTLFWT   76 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhc-CC-----ccHHHHHHHHHHHHHHH-HHHHHH--HHhCCcHHHHHHhCChhHHHHH
Confidence            458888888888888777766664 22     11233332  2334333 222211  122222222333343333222 


Q ss_pred             H---HHHHHHHHHHHHHHHHhh-hHHHHHHHhhHHHHHHHHHHHHhC-------CCccHHHHHHHHHHHHHHHHhcccc
Q 015564          284 I---FNNAAQGILSCFFLKYAD-AILKKYSSTVATIFTGIASAVLFG-------HTLTMNFLLGISIVFISMHQFFSSL  351 (404)
Q Consensus       284 i---~~~a~ggl~vs~v~kya~-~i~k~~a~~~~iv~s~lls~llfg-------e~lt~~~~lG~~lVi~gv~ly~~~~  351 (404)
                      .   ++-++||+.-+..+||.+ +.--+.+..+..++.+++--++.|       .+-....++|.+++++|+.+..+.-
T Consensus        77 ~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG  155 (344)
T PF06379_consen   77 FLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG  155 (344)
T ss_pred             HHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence            2   344679999999999987 333344444455666666555433       2234477999999999988877643

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=84.24  E-value=0.73  Score=44.35  Aligned_cols=57  Identities=23%  Similarity=0.318  Sum_probs=45.3

Q ss_pred             HHHHHHHHH---hhhHHHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhcccc
Q 015564          292 ILSCFFLKY---ADAILKKYSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSSL  351 (404)
Q Consensus       292 l~vs~v~ky---a~~i~k~~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~~  351 (404)
                      ..+.+.+.|   +|+++..|   .++++++++++++++|+.|..-.+|..+-+.|+.+-.+|+
T Consensus       112 mlmyya~~~mslaDA~vItF---ssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  112 MLMYYALMYMSLADAVVITF---SSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             HHHHHHHhhcchhheEEEEe---cChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            344555555   45554444   7899999999999999999999999999999987766654

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=83.23  E-value=3.1  Score=34.40  Aligned_cols=70  Identities=14%  Similarity=0.132  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccChHHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 015564          119 NVLLAVPAFLYAINNYLKFIMQLYFNPATV-KMLSNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISV  188 (404)
Q Consensus       119 ~~~~~vpA~ly~~~n~L~f~al~~l~~~t~-~vl~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~l  188 (404)
                      +|.|.+|-+++--...++|.-+++.|.+.+ -+.+++...+|+++...+-.|....+-.++..+..+|+.+
T Consensus        52 ~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L  122 (125)
T KOG4831|consen   52 NWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL  122 (125)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence            367999999999999999999999887654 5778889999999999876666666677777777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	404
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.25
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.11
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.94
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.61
3b9w_A	407	Ammonium transporter family; membrane protein, amm	83.65

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.25  E-value=7.3e-06  Score=67.37  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564          123 AVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (404)
Q Consensus       123 ~vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~  193 (404)
                      ..-.++|.+...+...+++++|.+....+ ..+.|+.+++++++++||++++.||+++.+..+|+..+...+
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44456888999999999999999999887 899999999999999999999999999999999999986643

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.11  E-value=3.6e-06  Score=71.95  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccCC
Q 015564          124 VPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVLVIAVLLKIIMRRRFSIIQWEALALLLIGISVNQLRS  193 (404)
Q Consensus       124 vpA~ly~~~n~L~f~al~~l~~~t~~vl-~q~k~l~tal~s~l~L~ekls~~qwlal~Ll~~Gv~lv~~~~  193 (404)
                      +-.++|.+...+.+.+++++|++....+ ..+.|+++++++++++||++++.||+++++.++|+.++...+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3456788999999999999999977777 899999999999999999999999999999999999987643

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.94  E-value=1.1e-05  Score=69.00  Aligned_cols=65  Identities=17%  Similarity=0.141  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHH-HHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          286 NNAAQGILSCFFLKYADAILKKY-SSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       286 ~~a~ggl~vs~v~kya~~i~k~~-a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      ..++.-.+....+|+.+...... .+.+.+++++++|+++|||++|+.+++|+++|+.|+++.+..
T Consensus        39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            33444456667778777554433 378999999999999999999999999999999999988764

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.61  E-value=0.00038  Score=56.97  Aligned_cols=63  Identities=17%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHH-HHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhccc
Q 015564          288 AAQGILSCFFLKYADAILKK-YSSTVATIFTGIASAVLFGHTLTMNFLLGISIVFISMHQFFSS  350 (404)
Q Consensus       288 a~ggl~vs~v~kya~~i~k~-~a~~~~iv~s~lls~llfge~lt~~~~lG~~lVi~gv~ly~~~  350 (404)
                      ++.-.+....+|+.|..... ....+.+++++++++++|||++|..+++|+++|+.|+.+.+..
T Consensus        41 ~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            33445566778887755443 3367899999999999999999999999999999999887664

>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*

Probab=83.65  E-value=6.2  Score=39.16  Aligned_cols=72  Identities=11%  Similarity=0.023  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhCCCCCH-----HHHHHHHHHHHHHHhh--ccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 015564          158 VIAVLLKIIMRRRFSI-----IQWEALALLLIGISVN--QLRSLPEGSTAMGLPVAMGAYIYTLIFITVPSMASVFNEYA  230 (404)
Q Consensus       158 ~tal~s~l~L~ekls~-----~qwlal~Ll~~Gv~lv--~~~~~~~~~~~~~~~~~~~G~ll~L~a~~~sala~Vy~ekl  230 (404)
                      ..++...++|+||...     .+--.+.+.++|..+.  .+.+...+. ..+ .......+=+.+++..++++....+++
T Consensus       151 ~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~Gl-~~~-~~~~~a~~NT~lAaaag~l~~~~~~~~  228 (407)
T 3b9w_A          151 YFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAI-VPF-EQMPQTIVNTLLALCGATLATYFLSAL  228 (407)
T ss_dssp             HHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTT-SCG-GGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhhh-ccc-hhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            5677778888876422     1233455555665543  222211110 000 011112333445556666776667766


Q ss_pred             h
Q 015564          231 L  231 (404)
Q Consensus       231 l  231 (404)
                      .
T Consensus       229 ~  229 (407)
T 3b9w_A          229 F  229 (407)
T ss_dssp             H
T ss_pred             H
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00