Citrus Sinensis ID: 015565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
Protein Sequence
MGNFTVSLSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSIDDESELLSSRNGPILSLSNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEPELETEPEASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV
Secondary Structure (PSIPRED)
cccEEEEccccccccccccccccccccEEccccccccccccccccEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccccccccEEEEcccccccccccEEEEEEccEEEccccEEEEEEcccccccccccccHHccccccccccccccccccccccccHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccEEccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHccHHHHHHHHHHcccccccHccHHHHHHHHccccc
Coil and Loop (DISEMBL)
mgnftvslssygpsegrclpcmgvsgrAVAVSscssrgdfrilSQVKIGavkysskgasfacrassgsyrrnpdfsrqnrngyrgrnrqneerdsiddesellssrngpilslsnspkfqatstpgpreKEIVELFRKVQVQLRERAAARedkktesmqgqrkesETVDSLLKLLRKHSveqgkrksssgssndfsleqdepngshiedkstsffdsssrartesrepnvssftrpasnfrrrspvtqfkyqpvysseetensisrldssgkgkkssleihtdpkresesepeletepeasfadgevydeasdvesnvitdgslydevlenepniiddsvyrvseegessdndedenkqeeiengdlsalklPELRALAKSRGVKGFSKMKKAVLLELLAGSSV
Flexible Loop (DISEMBL)
MGNFTVSlssygpsegRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIgavkysskgasfacrassgsyrrnpdfsrqnrngyrgrnrqneerdsiDDESELLSsrngpilslsnspkfqatstpgprekEIVELFRKVQVQLRERaaaredkktesmqgqrkesetvDSLLKLLRKhsveqgkrksssgssndfsleqdepngshiedkstsffdsssrartesrepnvssftrpasnfrrrspvtqfkyqpvysseetensisrldssgkgkkssleihtdpkresesepeletepeasfadgevYDEASDVESNVITdgslydevlenepniiddsvyrVSEEgessdndedenkqeeiengdlsalklpELRALAksrgvkgfskmKKAVLLellagssv
Low Complexity Region (SEG)
MGNFTVSLSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYRRNPDFSrqnrngyrgrnrqneerdsiddesellssrNGPILSLSNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDssgkgkkssLEIHTDPKResesepeletepeASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVseegessdndedenkqeeienGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV
Disordered region (IsUnstruct)
****************RCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSK******************************************************************************LF*************************************************************************************************************************************************************************************VITDGSLYDEVLE***NII********************************************************AVLL********
Disordered Region (DISOPRED)
***FTVSLSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGAS*************************************************************************************************************************************************************************************************************************************************************************************************************************PELRALAKSRGVKGFSKMKKAVLLELLAG***
Disordered Region (DISEMBL)
MGNFTVSLSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYRRNPDFSRQNRNGYRGR*****************SSRNGPILSLSNSP**********REKEIVELFRKVQVQLRE**********************VDSLLKLLRK****************************HIEDKSTSF*********************PASNFRRRSPVTQFKYQP***********************************************SFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRV******************IENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV
Disordered Region (DISPRO)
*GNFTVSLSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRAS************************************************************GPREKEIVELFRKVQVQLRERAAA*******************DS*****RKH**********************************************************************FK*********************************************************************************************************************SALKLPELRALAKSRGVKGFSKMKKAVLLELLAG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNFTVSLSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSIDDESELLSSRNGPILSLSNSPKFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEPELETEPEASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	404	2.2.26 [Sep-21-2011]
Q94K75	401	Rho-N domain-containing p	yes	no	0.940	0.947	0.466	1e-66
Q8L4E7	375	SAP-like protein BP-73 OS	yes	no	0.883	0.952	0.370	1e-44

>sp|Q94K75|RHON1_ARATH Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=RHON1 PE=1 SV=1

 Score =  253 bits (647), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 195/418 (46%), Positives = 251/418 (60%), Gaps = 38/418 (9%)

Query: 2   GNFTVS---LSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGA 58
           G F ++   +  Y  S+ RC     VS R +A+  CSS  D       K G +K     +
Sbjct: 5   GTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDH------KNGRLKSVPNRS 58

Query: 59  SFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSIDDE-SELLSSRNGPILSLSNSP 117
           SF CRASSG YRRNPDFSR N++GYRG NRQ+  R+  D E S++LSSRNGP+ +LS+SP
Sbjct: 59  SFVCRASSGGYRRNPDFSRLNKHGYRGNNRQSGGREDFDIENSDMLSSRNGPLFNLSSSP 118

Query: 118 KFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESM--QGQRKESETVDSLLKLL 175
           KFQATS+PGPREKEIVELFRKVQ QLR RAAA++++K      +GQ KESETVDSLLKLL
Sbjct: 119 KFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSLLKLL 178

Query: 176 RKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHI--EDKSTSFFDSSSRARTESREPNVSSF 233
           RKHS EQ KR+ S  SS      Q E  G  +  +D++ +   S       +++ N SSF
Sbjct: 179 RKHSGEQSKRQVSKFSS------QGEVQGDTVDKQDRTGNLVTSG------NKDNNASSF 226

Query: 234 TRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKR----ESE 289
           TRP S+FRR+SPV + +  P YSSE T +  S    +   KK ++E+H +P+     E E
Sbjct: 227 TRPTSSFRRKSPVPRSQSPPAYSSEATFDQSSSYSVTWTQKKDTVELHDEPEHEPAYEHE 286

Query: 290 SEPELETEPEASFA----DGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSE 345
            EPE E+EP         D E+  E+S        D   +D VL  +  I+D       +
Sbjct: 287 HEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFD-VLSQDDGILD---VLSDD 342

Query: 346 EGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSS 403
           +    D DED ++ EE    DLS LKL ELR +AKSRG+KG SKMKKA L+ELL   S
Sbjct: 343 DESLDDADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGSDS 400

Binds to and supports processing of specific plastid RNAs. Associates via its C-terminal Rho-N domain to single stranded regions of 16S and 23S rRNAs or to rbcL mRNAs. May be involved in targeting transcripts to RNases such as RNE or RNase J.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4E7|BP73_ORYSJ SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73 PE=1 SV=1

 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 148/399 (37%), Positives = 223/399 (55%), Gaps = 42/399 (10%)

Query: 13  PSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYR-R 71
           P  GR LP      R +  +   S+    +L  +K+          S  C A+  ++R R
Sbjct: 5   PHPGRTLPAYHGDNRFLLGACFLSK--LPMLRPMKL----------SLVCSANPNNHRSR 52

Query: 72  NPDFSRQNRNG-YRGRNRQNEERD---SIDD-ESELLSSRNGPILSLSNSPKFQATSTPG 126
           + D +R  + G  R +++  +E+D   +ID+ +++++SS+NGP +SL+++ + QATS PG
Sbjct: 53  SSDITRHQKGGSARRKSKPYQEKDDSENIDEFDTDIMSSKNGPPISLTSNSRPQATSVPG 112

Query: 127 PREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRK 186
            REKEIVELF++VQ QLR R   +E+KK E  + Q  E  +VDSLL LLRKHSV+Q ++ 
Sbjct: 113 EREKEIVELFKRVQAQLRARGKGKEEKKPEQAKAQ-GERGSVDSLLNLLRKHSVDQRRK- 170

Query: 187 SSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSPV 246
             SG   + S++Q + +      +++S F  +   + E ++P+ ++F RPASNFRRRSPV
Sbjct: 171 --SGDEKEQSVDQTKRSNESGNKQNSSIFIKND-TQEEQKKPHPAAFKRPASNFRRRSPV 227

Query: 247 TQFKYQPVYSSEETENSISRLDSSGKGKKSSLE--IHTD-PKRESESEPELETEPEASFA 303
              K+QPV ++ + E  I+ ++ + +  K +LE    TD P   S  EP    EPE    
Sbjct: 228 PNVKFQPV-TNVDAERVINNINDAVQEAKPTLENKAATDEPDSVSTFEPNSVIEPENLSL 286

Query: 304 DGEVYDEASDVESNVITDGSLYDEVL--ENEPNIIDDSVYRVSEEGESSDNDEDENKQEE 361
           D    D  SD E     D S  DE     +EP++   SV  +       D   D   +  
Sbjct: 287 DD--LDHISDDE----PDASDTDEPSGEYDEPSLQIPSVPII-------DESHDTTLKSS 333

Query: 362 IENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 400
           +   DLS LK+ ELR LAKSRG+KG+SKMKK  L+ELL+
Sbjct: 334 LGGPDLSTLKVTELRELAKSRGIKGYSKMKKNDLVELLS 372

May regulate cell proliferation and plant growth.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
224066243	389	predicted protein [Populus trichocarpa]	0.898	0.933	0.566	1e-113
255582495	385	conserved hypothetical protein [Ricinus	0.903	0.948	0.559	1e-109
297744156	351	unnamed protein product [Vitis vinifera]	0.841	0.968	0.566	1e-104
225438113	377	PREDICTED: SAP-like protein BP-73-like [	0.891	0.954	0.580	1e-103
449468556	405	PREDICTED: SAP-like protein BP-73-like i	0.918	0.916	0.476	1e-83
224082822	389	predicted protein [Populus trichocarpa]	0.858	0.892	0.480	2e-83
449468554	410	PREDICTED: SAP-like protein BP-73-like i	0.900	0.887	0.479	6e-83
356537005	374	PREDICTED: SAP-like protein BP-73-like [	0.868	0.938	0.455	4e-76
449525124	330	PREDICTED: SAP-like protein BP-73-like,	0.710	0.869	0.510	9e-71
18390623	401	Rho termination factor [Arabidopsis thal	0.940	0.947	0.466	9e-65

>gi|224066243|ref|XP_002302043.1| predicted protein [Populus trichocarpa] gi|222843769|gb|EEE81316.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/418 (56%), Positives = 291/418 (69%), Gaps = 55/418 (13%)

Query: 5   TVSLSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRA 64
           T +L  YG SEGRCLPC G+SGRAVAVS CSSRG   + SQ + G +K SS+ +S  C+ 
Sbjct: 9   TKNLPGYGSSEGRCLPCSGISGRAVAVSPCSSRGVHYVHSQAQFGKMKCSSRASSIVCK- 67

Query: 65  SSGSYRRNPDFSRQNRNGY-RGRNRQNEERDSID--DESELLSSRNGPILSLSNSPKFQA 121
           SSG +RRNPDFSRQN+ G+ R RNRQNEE +  +  DES+LL+S+NGP+LSLS +PKFQA
Sbjct: 68  SSGGHRRNPDFSRQNKQGFSRNRNRQNEEGNGFENLDESDLLTSKNGPLLSLSGTPKFQA 127

Query: 122 TSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVE 181
           T+ PGPREKEIVELFRKVQ QLRERAA +E+KK E+ QG+ +E+ETVDSLLKLLRKHSVE
Sbjct: 128 TAAPGPREKEIVELFRKVQAQLRERAAVKEEKKVEASQGKGRENETVDSLLKLLRKHSVE 187

Query: 182 QGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFR 241
           QGK+K+S+ SS D SL+Q E NG++ + K TSFFDSS + R +  EP ++SFTRP SNFR
Sbjct: 188 QGKKKTSNISSGDLSLDQPE-NGTYKKAKGTSFFDSSKKERNDVLEP-ITSFTRPPSNFR 245

Query: 242 RRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEPELETEPE-- 299
           R+SPV Q K+QP+YSSE+  NS S L+ +G+ KK   EI  D  +E E +PEL+ E E  
Sbjct: 246 RKSPVPQVKFQPIYSSEDPVNSTSHLNLNGE-KKQQFEILPDTTQELELDPELDAEEEHE 304

Query: 300 ----------ASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGES 349
                      SFA G+V+DE S                                 EGES
Sbjct: 305 LDSEPEPEPEPSFAGGDVFDELS---------------------------------EGES 331

Query: 350 SDNDE---DENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV 404
           SD D    D  KQ+ IE+ DLS+LKLPELRALAKSRGVKGFSKMKK  L+ELL+GSS+
Sbjct: 332 SDMDNVDGDGEKQQLIEHEDLSSLKLPELRALAKSRGVKGFSKMKKGELVELLSGSSM 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582495|ref|XP_002532033.1| conserved hypothetical protein [Ricinus communis] gi|223528303|gb|EEF30349.1| conserved hypothetical protein [Ricinus communis]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/406 (55%), Positives = 284/406 (69%), Gaps = 41/406 (10%)

Query: 8   LSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSG 67
           +  YG SE RCLP  G+SG+AVA+  C S G+    SQ+K+G++K +S  ASF CRASSG
Sbjct: 12  IPGYGSSESRCLPSSGISGKAVAIPLCPSHGNHITYSQIKVGSIKCASGAASFLCRASSG 71

Query: 68  SYRRNPDFSRQNRNGY-RGRNRQNEERDSID--DESELLSSRNGPILSLSNSPKFQATST 124
             RRN DFS+Q+R G+ R RNRQNEERDS +  D+S+LL+SR+GP+LSLSN+ KFQAT+ 
Sbjct: 72  GPRRNSDFSKQSRQGFSRNRNRQNEERDSFENLDDSDLLTSRSGPLLSLSNTSKFQATAG 131

Query: 125 PGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGK 184
           PGPREKEIVELFRKVQ QLRERAA +EDKK E+ +G+ KESETVDSLLKLLRKHS+EQGK
Sbjct: 132 PGPREKEIVELFRKVQAQLRERAAVKEDKKVEASKGKVKESETVDSLLKLLRKHSIEQGK 191

Query: 185 RKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRS 244
           +K SS  + DF+++  E NGS   D+ST FF+ +++AR+E  E N +SF+RP SNFRR+S
Sbjct: 192 KKVSSVGTGDFAVDSPEHNGSLSGDRSTGFFNPNNKARSEVPEHNSTSFSRPPSNFRRKS 251

Query: 245 PVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTD----PKRESESEPELET--EP 298
           PV Q KYQP+YS+E+  NS S  D +G  KK   E   D    PK E++ EPELE   EP
Sbjct: 252 PVPQVKYQPIYSNEDPSNSTSYFDLTGD-KKKRFEALPDTAQQPKLETQ-EPELEVALEP 309

Query: 299 EASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDNDEDENK 358
           E+SF DG   DE S+ ES+ I                               D +E  N+
Sbjct: 310 ESSFLDGNAVDELSEEESSDI------------------------------DDINEFSNQ 339

Query: 359 QEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV 404
           Q+E E+ DLS+LKLPELRALAKSRG+KGFSKMKK  L+ELL+G SV
Sbjct: 340 QKENEHEDLSSLKLPELRALAKSRGLKGFSKMKKGDLVELLSGDSV 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744156|emb|CBI37126.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/399 (56%), Positives = 274/399 (68%), Gaps = 59/399 (14%)

Query: 9   SSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGS 68
           + YGPS+GRCLPC GVS RAVA+S C+SR D++ LSQVKI  +K  S+GASF C ASS  
Sbjct: 9   AGYGPSDGRCLPCSGVSRRAVALSPCTSRCDYKTLSQVKIVPLKCISRGASFMCNASSSG 68

Query: 69  YRRNPDFSRQNRNGY-RGRNRQNEERDSIDDESE--LLSSRNGPILSLSNSPKFQATSTP 125
            RRNPDFSRQ+R+G+ RGRNR NEE ++ ++  E   LSS+NGP+LSLS SPKFQAT+TP
Sbjct: 69  NRRNPDFSRQSRHGFSRGRNRHNEENNNSENLEESEFLSSKNGPLLSLSGSPKFQATATP 128

Query: 126 GPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKR 185
           GPREKEIVELFRKVQ QLR+RAA +E++K+E+ Q Q KESE VDSLLKLLRKHSVEQGKR
Sbjct: 129 GPREKEIVELFRKVQAQLRDRAAMKEERKSEASQRQAKESENVDSLLKLLRKHSVEQGKR 188

Query: 186 KSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSP 245
           +S   SS DF+L Q + NG   E+KSTSFFD SS  R E+REPN +SFTRPASNF+R+SP
Sbjct: 189 RS---SSRDFNLSQPDQNGPFDEEKSTSFFDLSSSMRDEAREPN-ASFTRPASNFQRKSP 244

Query: 246 VTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEPELETEPEASFADG 305
           V + KY   Y   +T NS+S  +  GK KKS                     PE +F DG
Sbjct: 245 VPRVKY---YPGRDTVNSVSYPNMGGKKKKSL--------------------PETTFPDG 281

Query: 306 EVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQEEIENG 365
           +V+DE SD ES   +D  +YD                          DED  +QE  ++ 
Sbjct: 282 DVFDELSDAES---SDTEVYD--------------------------DEDAEEQESAQHR 312

Query: 366 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV 404
           DLSALKLPELRALAKSRG+KGFSK+KK  L+ELL G S+
Sbjct: 313 DLSALKLPELRALAKSRGMKGFSKLKKGELMELLIGRSI 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438113|ref|XP_002277984.1| PREDICTED: SAP-like protein BP-73-like [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 235/405 (58%), Positives = 287/405 (70%), Gaps = 45/405 (11%)

Query: 9   SSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGS 68
           + YGPS+GRCLPC GVS RAVA+S C+SR D++ LSQVKI  +K  S+GASF C ASS  
Sbjct: 9   AGYGPSDGRCLPCSGVSRRAVALSPCTSRCDYKTLSQVKIVPLKCISRGASFMCNASSSG 68

Query: 69  YRRNPDFSRQNRNGY-RGRNRQNEERDSIDDESE--LLSSRNGPILSLSNSPKFQATSTP 125
            RRNPDFSRQ+R+G+ RGRNR NEE ++ ++  E   LSS+NGP+LSLS SPKFQAT+TP
Sbjct: 69  NRRNPDFSRQSRHGFSRGRNRHNEENNNSENLEESEFLSSKNGPLLSLSGSPKFQATATP 128

Query: 126 GPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKR 185
           GPREKEIVELFRKVQ QLR+RAA +E++K+E+ Q Q KESE VDSLLKLLRKHSVEQGKR
Sbjct: 129 GPREKEIVELFRKVQAQLRDRAAMKEERKSEASQRQAKESENVDSLLKLLRKHSVEQGKR 188

Query: 186 KSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSP 245
           +S   SS DF+L Q + NG   E+KSTSFFD SS  R E+REPN +SFTRPASNF+R+SP
Sbjct: 189 RS---SSRDFNLSQPDQNGPFDEEKSTSFFDLSSSMRDEAREPN-ASFTRPASNFQRKSP 244

Query: 246 VTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTD------PKRESESEPELETEPE 299
           V + KY   Y   +T NS+S  +  GK KKS +E ++       P+ E E EPE E EPE
Sbjct: 245 VPRVKY---YPGRDTVNSVSYPNMGGKKKKSLVETYSQPEPEPEPEPEPEPEPEPELEPE 301

Query: 300 ASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQ 359
            +F DG+V+DE SD ES   +D  +YD                          DED  +Q
Sbjct: 302 TTFPDGDVFDELSDAES---SDTEVYD--------------------------DEDAEEQ 332

Query: 360 EEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV 404
           E  ++ DLSALKLPELRALAKSRG+KGFSK+KK  L+ELL G S+
Sbjct: 333 ESAQHRDLSALKLPELRALAKSRGMKGFSKLKKGELMELLIGRSI 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468556|ref|XP_004151987.1| PREDICTED: SAP-like protein BP-73-like isoform 2 [Cucumis sativus]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 202/424 (47%), Positives = 265/424 (62%), Gaps = 53/424 (12%)

Query: 5   TVSLSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRA 64
            + L  + P++ RC+PC GVSGRA + S  S   + RI   VK   +  +S G SF C+A
Sbjct: 4   AIHLLPHNPTDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSLGESFTCKA 63

Query: 65  SSGSYRRNPDFSRQNRNGY-RGRNRQNEERDSID--DESELLSSRNGPILSLSNSPKFQA 121
           SSG +RRNPDF +QNR+G+ R RNRQNEER+S+D  DES+LL S+NGP+LS+S++PK QA
Sbjct: 64  SSGGHRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSISSTPKSQA 123

Query: 122 TSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVE 181
           T+TPGPREKEIVELFRKVQ QLRERAA +E+KK E+ QGQ K SETVDSLLKLLRKHSVE
Sbjct: 124 TATPGPREKEIVELFRKVQAQLRERAAMKEEKKVEA-QGQTKGSETVDSLLKLLRKHSVE 182

Query: 182 QGKR--KSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASN 239
           QGKR       S+ D S    + NG + E + +SFF  S   R +++        RP SN
Sbjct: 183 QGKRSSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQ--------RPVSN 234

Query: 240 FRRRSPVTQFKYQPVYSSEETENSISRLDSSG------------KGK----KSSLEIHTD 283
           F+RRSPV + KYQP+Y  E   NS + ++S G            KGK    + S   H +
Sbjct: 235 FQRRSPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEREHWE 294

Query: 284 ---PKRESESEP----ELETEPEASFADGEVYDEASDVESNVITDGSLYDEVLENEPNII 336
               +RE+E EP    E E EPEA   D E   E  ++E  ++    +  +V        
Sbjct: 295 ELQSQREAEQEPEPDQEFELEPEAETYDLE--HEGDEMEPELVNLLGVSSDV-------- 344

Query: 337 DDSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLL 396
           DD+      E +  DN+E   K  E E+ DL++LKL ELRA+AKSR ++GFSKMKK+ L+
Sbjct: 345 DDTF-----EDDVKDNEEFA-KHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELV 398

Query: 397 ELLA 400
           +LL+
Sbjct: 399 QLLS 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082822|ref|XP_002306853.1| predicted protein [Populus trichocarpa] gi|222856302|gb|EEE93849.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 197/410 (48%), Positives = 259/410 (63%), Gaps = 63/410 (15%)

Query: 7   SLSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASS 66
           +L  YG SEGRCL C G+ GRAV VS CSS       SQ + G +K S + +   C+ SS
Sbjct: 31  ALQGYGSSEGRCLLCSGIYGRAVLVSPCSSHCVRYNHSQAQFGKMKCSFRASYIVCK-SS 89

Query: 67  GSYRRNPDFSRQNRNGYRGRNRQNEERDSID--DESELLSSRNGPILSLSNSPKFQATST 124
           G +RRNPD SRQN+   R RNRQNE+R   +  DES+LL+S+NG +LS S +PKFQAT+ 
Sbjct: 90  GGHRRNPDVSRQNKQVSRNRNRQNEKRSGFENLDESDLLTSKNGSLLSFSGTPKFQATAA 149

Query: 125 PGPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGK 184
           PGPRE                 AAA+EDKK E+ QG+ +ESETVDSLLKLLR+HS EQGK
Sbjct: 150 PGPRE-----------------AAAKEDKKFEASQGKGRESETVDSLLKLLRQHSTEQGK 192

Query: 185 RKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRS 244
           +K+S+ SS +F+L+Q E NG++ + K TS F+SS + R ++ EPN +SFT+P + FRR+S
Sbjct: 193 KKTSNVSSGNFNLDQPE-NGAYKKAKGTSSFNSSKKERNDALEPN-TSFTKPPAKFRRKS 250

Query: 245 PVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEP----------EL 294
           PV Q K+QP+YSSE+  NS S L+ +G+ K++  EI  D   E E +P          + 
Sbjct: 251 PVPQVKFQPIYSSEDLVNSTSHLNLNGE-KRNQFEILPDTTEELELDPEIKPEEEPELDS 309

Query: 295 ETEPEASFADGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDNDE 354
           E EPE++F  G+++DE S  ES+ I +                     V E GE      
Sbjct: 310 EQEPESAFPGGDMFDELSVGESSDIEN---------------------VDEGGE------ 342

Query: 355 DENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSSV 404
              K ++IE   LS+LKLPELR LAKS+GVKGFSKMKK  L+ELL+GSSV
Sbjct: 343 ---KHQQIEYEVLSSLKLPELRVLAKSQGVKGFSKMKKGELVELLSGSSV 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468554|ref|XP_004151986.1| PREDICTED: SAP-like protein BP-73-like isoform 1 [Cucumis sativus]

 Score =  314 bits (804), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 203/423 (47%), Positives = 265/423 (62%), Gaps = 59/423 (13%)

Query: 9   SSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGS 68
           + +G S+ RC+PC GVSGRA + S  S   + RI   VK   +  +S G SF C+ASSG 
Sbjct: 13  TGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSLGESFTCKASSGG 72

Query: 69  YRRNPDFSRQNRNGY-RGRNRQNEERDSID--DESELLSSRNGPILSLSNSPKFQATSTP 125
           +RRNPDF +QNR+G+ R RNRQNEER+S+D  DES+LL S+NGP+LS+S++PK QAT+TP
Sbjct: 73  HRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSISSTPKSQATATP 132

Query: 126 GPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKR 185
           GPREKEIVELFRKVQ QLRERAA +E+KK E+ QGQ K SETVDSLLKLLRKHSVEQGKR
Sbjct: 133 GPREKEIVELFRKVQAQLRERAAMKEEKKVEA-QGQTKGSETVDSLLKLLRKHSVEQGKR 191

Query: 186 --KSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRR 243
                  S+ D S    + NG + E + +SFF  S   R +++        RP SNF+RR
Sbjct: 192 SSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQ--------RPVSNFQRR 243

Query: 244 SPVTQFKYQPVYSSEETENSISRLDSSG------------KGK----KSSLEIHTD---P 284
           SPV + KYQP+Y  E   NS + ++S G            KGK    + S   H +    
Sbjct: 244 SPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEREHWEELQS 303

Query: 285 KRESESEP----ELETEPEASFADGEVYD---EASDVESNVITDGSLYDEVLENEPNIID 337
           +RE+E EP    E E EPEA     E YD   E  ++E  ++    +  +V        D
Sbjct: 304 QREAEQEPEPDQEFELEPEA-----ETYDLEHEGDEMEPELVNLLGVSSDV--------D 350

Query: 338 DSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLE 397
           D+      E +  DN+E   K  E E+ DL++LKL ELRA+AKSR ++GFSKMKK+ L++
Sbjct: 351 DTF-----EDDVKDNEEFA-KHGEQEHEDLNSLKLAELRAIAKSRSLRGFSKMKKSELVQ 404

Query: 398 LLA 400
           LL+
Sbjct: 405 LLS 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537005|ref|XP_003537022.1| PREDICTED: SAP-like protein BP-73-like [Glycine max]

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 180/395 (45%), Positives = 243/395 (61%), Gaps = 44/395 (11%)

Query: 12  GPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGSYRR 71
           G +EG+CLPC GVSGR  AV S SS G  RI S+V++  +K   +GASF C A     +R
Sbjct: 16  GMAEGKCLPCSGVSGRTAAVYSYSSLGHHRIHSRVQVRGLKCGFRGASFVCEA-----KR 70

Query: 72  NPDFSRQNRNGY-RGRNRQNEERDSIDD-ESELLSSRNGPILSLSNSPKFQATSTPGPRE 129
           NPDFSRQN++G  R RNR ++ RDS +  + ++ S +NGP +SLS S KFQATS PGPRE
Sbjct: 71  NPDFSRQNKHGSSRSRNRNSDGRDSFESFDDDMFSLKNGPPVSLSTSGKFQATSAPGPRE 130

Query: 130 KEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKRKSSS 189
           KEIVELFRKVQ +LRERAA++E+KK E+ + Q KE+ TVDSLLKLL+KHSVEQ KR S  
Sbjct: 131 KEIVELFRKVQARLRERAASKEEKKVEASRAQSKENSTVDSLLKLLKKHSVEQVKRSSGG 190

Query: 190 GSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNV--SSFTRPASNFRRRSPVT 247
           G   DFS +Q + +  +   ++    D  S  + E +E NV  SS  RP SNF+RRSPV 
Sbjct: 191 GRGKDFSSDQMQESNQYDGGRNAKISDLDSTPKDEPQEDNVFSSSVARPRSNFQRRSPVP 250

Query: 248 QFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKRESESEPELETEPEASFADGEV 307
           + KYQPV + E+  + +       +  +  +++  D + ES+SE +++++ E  F     
Sbjct: 251 RVKYQPVSNDEDDTDVVPVGSEDTENNQDQIDLKLDDEAESDSESDVDSKDELFF----- 305

Query: 308 YDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSD--NDEDENKQEEIENG 365
                                    PNI    +  +SE+ +S    NDE   +Q   ++ 
Sbjct: 306 -------------------------PNI---GMAELSEDDDSEQTYNDESVEEQPVAQHE 337

Query: 366 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA 400
           D SALKL ELRALAK+RG+KGFSKMKK+ L+ELL 
Sbjct: 338 DFSALKLSELRALAKTRGLKGFSKMKKSDLMELLT 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525124|ref|XP_004169569.1| PREDICTED: SAP-like protein BP-73-like, partial [Cucumis sativus]

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 168/329 (51%), Positives = 211/329 (64%), Gaps = 42/329 (12%)

Query: 9   SSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGASFACRASSGS 68
           + +G S+ RC+PC GVSGRA + S  S   + RI   VK   +  +S G SF C+ASSG 
Sbjct: 13  TGFGLSDSRCIPCSGVSGRAASFSFHSLCAEHRINVPVKFRPLNCTSLGESFTCKASSGG 72

Query: 69  YRRNPDFSRQNRNGY-RGRNRQNEERDSID--DESELLSSRNGPILSLSNSPKFQATSTP 125
           +RRNPDF +QNR+G+ R RNRQNEER+S+D  DES+LL S+NGP+LS+S++PK QAT+TP
Sbjct: 73  HRRNPDFPKQNRHGFSRSRNRQNEERESLDNVDESDLLLSKNGPLLSISSTPKSQATATP 132

Query: 126 GPREKEIVELFRKVQVQLRERAAAREDKKTESMQGQRKESETVDSLLKLLRKHSVEQGKR 185
           GPREKEIVELFRKVQ QLRERAA +E+KK E+ QGQ K SETVDSLLKLLRKHSVEQGKR
Sbjct: 133 GPREKEIVELFRKVQAQLRERAAMKEEKKVEA-QGQTKGSETVDSLLKLLRKHSVEQGKR 191

Query: 186 --KSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRR 243
                  S+ D S    + NG + E + +SFF  S   R +++        RP SNF+RR
Sbjct: 192 SSGGGGSSNKDISFNHVKENGPYDEGRGSSFFGLSPNLREKAQ--------RPVSNFQRR 243

Query: 244 SPVTQFKYQPVYSSEETENSISRLDSSG------------KGK----KSSLEIHTD---P 284
           SPV + KYQP+Y  E   NS + ++S G            KGK    + S   H +    
Sbjct: 244 SPVPRVKYQPIYPGESIVNSTNGMNSKGVKPNGTDTGSQLKGKVWTRQESEREHWEELQS 303

Query: 285 KRESESEP----ELETEPEASFADGEVYD 309
           +RE+E EP    E E EPEA     E YD
Sbjct: 304 QREAEQEPEPDQEFELEPEA-----ETYD 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390623|ref|NP_563761.1| Rho termination factor [Arabidopsis thaliana] gi|13877951|gb|AAK44053.1|AF370238_1 unknown protein [Arabidopsis thaliana] gi|17065622|gb|AAL33805.1| unknown protein [Arabidopsis thaliana] gi|332189835|gb|AEE27956.1| Rho termination factor [Arabidopsis thaliana]

 Score =  253 bits (647), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 195/418 (46%), Positives = 251/418 (60%), Gaps = 38/418 (9%)

Query: 2   GNFTVS---LSSYGPSEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKGA 58
           G F ++   +  Y  S+ RC     VS R +A+  CSS  D       K G +K     +
Sbjct: 5   GTFHLTSDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDH------KNGRLKSVPNRS 58

Query: 59  SFACRASSGSYRRNPDFSRQNRNGYRGRNRQNEERDSIDDE-SELLSSRNGPILSLSNSP 117
           SF CRASSG YRRNPDFSR N++GYRG NRQ+  R+  D E S++LSSRNGP+ +LS+SP
Sbjct: 59  SFVCRASSGGYRRNPDFSRLNKHGYRGNNRQSGGREDFDIENSDMLSSRNGPLFNLSSSP 118

Query: 118 KFQATSTPGPREKEIVELFRKVQVQLRERAAAREDKKTESM--QGQRKESETVDSLLKLL 175
           KFQATS+PGPREKEIVELFRKVQ QLR RAAA++++K      +GQ KESETVDSLLKLL
Sbjct: 119 KFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSLLKLL 178

Query: 176 RKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHI--EDKSTSFFDSSSRARTESREPNVSSF 233
           RKHS EQ KR+ S  SS      Q E  G  +  +D++ +   S       +++ N SSF
Sbjct: 179 RKHSGEQSKRQVSKFSS------QGEVQGDTVDKQDRTGNLVTSG------NKDNNASSF 226

Query: 234 TRPASNFRRRSPVTQFKYQPVYSSEETENSISRLDSSGKGKKSSLEIHTDPKR----ESE 289
           TRP S+FRR+SPV + +  P YSSE T +  S    +   KK ++E+H +P+     E E
Sbjct: 227 TRPTSSFRRKSPVPRSQSPPAYSSEATFDQSSSYSVTWTQKKDTVELHDEPEHEPAYEHE 286

Query: 290 SEPELETEPEASFA----DGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVSE 345
            EPE E+EP         D E+  E+S        D   +D VL  +  I+D       +
Sbjct: 287 HEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFD-VLSQDDGILD---VLSDD 342

Query: 346 EGESSDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSS 403
           +    D DED ++ EE    DLS LKL ELR +AKSRG+KG SKMKKA L+ELL   S
Sbjct: 343 DESLDDADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGSDS 400

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
TAIR|locus:2038560	401	RHON1 "Rho-N 1" [Arabidopsis t	0.943	0.950	0.400	1.1e-55
TAIR|locus:2055846	309	AT2G31150 [Arabidopsis thalian	0.368	0.482	0.481	1.5e-26
TAIR|locus:2124127	245	AT4G18740 [Arabidopsis thalian	0.089	0.146	0.5	2.8e-05

TAIR|locus:2038560 RHON1 "Rho-N 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 167/417 (40%), Positives = 208/417 (49%)

Query:     2 GNFTVSLSSYGP----SEGRCLPCMGVSGRAVAVSSCSSRGDFRILSQVKIGAVKYSSKG 57
             G F ++ S Y P    S+ RC     VS R +A+  CSS  D       K G +K     
Sbjct:     5 GTFHLT-SDYVPGYTLSDSRCFFNSAVSRRTLAILPCSSCLDH------KNGRLKSVPNR 57

Query:    58 ASFACRASSGSYRRNPDFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-NGPILSLSNS 116
             +SF CRASSG YRRNPDFS                               NGP+ +LS+S
Sbjct:    58 SSFVCRASSGGYRRNPDFSRLNKHGYRGNNRQSGGREDFDIENSDMLSSRNGPLFNLSSS 117

Query:   117 PKFQATSTPGPREKEIVELFRKVQVQLRERAAAR-EDKKTE-SMQGQRKESETVDSLLKL 174
             PKFQATS+PGPREKEIVELFRKVQ QLR RAAA+ E+KK E + +GQ KESETVDSLLKL
Sbjct:   118 PKFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKKIEEASKGQGKESETVDSLLKL 177

Query:   175 LRKHSVEQGKRKSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFT 234
             LRKHS EQ KR+ S  SS      Q E  G  + DK      + +   + +++ N SSFT
Sbjct:   178 LRKHSGEQSKRQVSKFSS------QGEVQGDTV-DKQDR---TGNLVTSGNKDNNASSFT 227

Query:   235 RPASNFRRRSPVTQFKYQPVYSSEETENSISRLDXXXXXXXXXLEIHTDPKRXXXXXXXX 294
             RP S+FRR+SPV + +  P YSSE T +  S            +E+H +P+         
Sbjct:   228 RPTSSFRRKSPVPRSQSPPAYSSEATFDQSSSYSVTWTQKKDTVELHDEPEHEPAYEHEH 287

Query:   295 XXXXXASFA--------DGEVYDEASDVESNVITDGSLYDEVLENEPNIIDDSVYRVXXX 346
                  +           D E+  E+S        D   +D VL  +  I+D         
Sbjct:   288 EPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFD-VLSQDDGILD---VLSDDD 343

Query:   347 XXXXXXXXXXXXXXXXXXGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGSS 403
                                DLS LKL ELR +AKSRG+KG SKMKKA L+ELL   S
Sbjct:   344 ESLDDADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGSDS 400

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IMP;IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010239 "chloroplast mRNA processing" evidence=IMP

GO:0019843 "rRNA binding" evidence=IDA

GO:0043621 "protein self-association" evidence=IPI

GO:1901259 "chloroplast rRNA processing" evidence=IMP

TAIR|locus:2055846 AT2G31150 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 77/160 (48%), Positives = 104/160 (65%)

Query:   129 EKEIVELFRKVQVQLRERAAAR-EDKKTE-SMQGQR-KESETVDSLLKLLRKHSVEQGKR 185
             EKEIVELF+KVQVQLR RAAA+ E+KKTE + +GQ  KESETVDSLLKLLRKHS EQ K+
Sbjct:    69 EKEIVELFKKVQVQLRARAAAKKEEKKTEEASKGQGGKESETVDSLLKLLRKHSGEQSKK 128

Query:   186 KSSSGSSNDFSLEQDEPNGSHIEDKSTSFFDSSSRARTESREPNVSSFTRPASNFRRRSP 245
             + S+ +S    L++D+ + S  ++ S+S FDS       +++ N + FTRPAS+F+R SP
Sbjct:   129 QVSNFNSEK-QLQRDD-DASERQNHSSSRFDS------RNKDHNATPFTRPASSFKRNSP 180

Query:   246 VTQFKYQPVYSSEETENSISRLDXXXXXXXXXLEIHTDPK 285
             V + K Q  YSSE   +  S            +E   +P+
Sbjct:   181 VPRHKSQASYSSEAIFDEASSYSVTWTQKKDQVESRDEPE 220

GO:0005524 "ATP binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2124127 AT4G18740 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 18/36 (50%), Positives = 29/36 (80%)

Query:   367 LSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGS 402
             +  +KL EL+ +AK+RG+KG+SK++K+ LLEL+  S
Sbjct:   210 IETMKLAELKEVAKNRGIKGYSKLRKSELLELIRSS 245

GO:0005739 "mitochondrion" evidence=ISM

GO:0006353 "DNA-dependent transcription, termination" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94K75	RHON1_ARATH	No assigned EC number	0.4665	0.9405	0.9476	yes	no
Q8L4E7	BP73_ORYSJ	No assigned EC number	0.3709	0.8836	0.952	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	404
PRK12678	672	PRK12678, PRK12678, transcription termination fact	5e-06
smart00959	43	smart00959, Rho_N, Rho termination factor, N-termi	2e-05
pfam07498	43	pfam07498, Rho_N, Rho termination factor, N-termin	4e-05
PRK14537	230	PRK14537, PRK14537, 50S ribosomal protein L20/unkn	0.004

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLE 397
           G L+ +KLPELRALAK  G+KG S M+K  L+ 
Sbjct: 21  GGLAGMKLPELRALAKQLGIKGTSGMRKGELIA 53

Length = 672

>gnl|CDD|198027 smart00959, Rho_N, Rho termination factor, N-terminal domain

 Score = 40.8 bits (97), Expect = 2e-05
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 366 DLSALKLPELRALAKSRGVKGFSKMKK 392
           +L    L EL  +AK  G++  S+++K
Sbjct: 1   ELKKKTLSELLEIAKELGIENASRLRK 27

The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain. Length = 43

>gnl|CDD|203652 pfam07498, Rho_N, Rho termination factor, N-terminal domain

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 366 DLSALKLPELRALAKSRGVKGFSKMKK 392
           +L    L ELR +AK  G++ +S+++K
Sbjct: 1   ELKEKTLAELREIAKELGIENYSRLRK 27

The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497). Length = 43

>gnl|CDD|237748 PRK14537, PRK14537, 50S ribosomal protein L20/unknown domain fusion protein; Provisional

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 350 SDNDEDENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELL 399
               + + K+  IE+ DLS + L EL+ LAK   +  F+K+KK  +++ L
Sbjct: 174 PQKTQLKEKKPSIEHIDLSKMLLKELKKLAKEHKIPNFNKLKKTEIIKAL 223

Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	404
PF07498	43	Rho_N: Rho termination factor, N-terminal domain;	98.77
PRK12678	672	transcription termination factor Rho; Provisional	98.33
PRK14537	230	50S ribosomal protein L20/unknown domain fusion pr	98.08
PF02037	35	SAP: SAP domain; InterPro: IPR003034 The SAP (afte	97.1
PF12949	35	HeH: HeH/LEM domain; PDB: 2OUT_A.	96.93
smart00513	35	SAP Putative DNA-binding (bihelical) motif predict	96.13
TIGR00578	584	ku70 ATP-dependent DNA helicase ii, 70 kDa subunit	93.44
PF10281	38	Ish1: Putative stress-responsive nuclear envelope	90.77

>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts

Probab=98.77  E-value=3e-09  Score=76.73  Aligned_cols=34  Identities=41%  Similarity=0.692  Sum_probs=29.5

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015565          367 LSALKLPELRALAKSRGVKGFSKMKKAVLLELLA  400 (404)
Q Consensus       367 Ls~MtvaELK~LAKe~GIKGySkMKKaELIeaLq  400 (404)
                      |..|++.||++||+++||+||++|+|.|||.+|.
T Consensus         2 L~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il   35 (43)
T PF07498_consen    2 LKSMTLSELREIAKELGIEGYSKMRKQELIFAIL   35 (43)
T ss_dssp             HHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHH
Confidence            6789999999999999999999999999999984

It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....

>PRK12678 transcription termination factor Rho; Provisional

Probab=98.33  E-value=4.3e-07  Score=96.19  Aligned_cols=46  Identities=41%  Similarity=0.650  Sum_probs=40.4

Q ss_pred             hhhhhhccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcC
Q 015565          357 NKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGS  402 (404)
Q Consensus       357 ~~~~~~~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~~  402 (404)
                      ........++|+.|+|+||++||+++||+|+++|+|.|||++|+..
T Consensus        13 ~~~~~a~~~~LsamkL~ELr~lA~~lGI~Gts~mrK~eLI~AI~~~   58 (672)
T PRK12678         13 DTAPRARGGGLAGMKLPELRALAKQLGIKGTSGMRKGELIAAIKEA   58 (672)
T ss_pred             ccCccccCCCcccCcHHHHHHHHHHcCCcccccccHHHHHHHHHHh
Confidence            3444556678999999999999999999999999999999999753

>PRK14537 50S ribosomal protein L20/unknown domain fusion protein; Provisional

Probab=98.08  E-value=1.7e-06  Score=82.30  Aligned_cols=38  Identities=37%  Similarity=0.531  Sum_probs=35.4

Q ss_pred             cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          364 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       364 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      ..+|+.|.|.||++|||++.|.||++|+|+|||+||..
T Consensus       188 ~~~l~~m~~~elk~lak~~~i~~~~~~kk~e~i~al~~  225 (230)
T PRK14537        188 HIDLSKMLLKELKKLAKEHKIPNFNKLKKTEIIKALKK  225 (230)
T ss_pred             cccHHHhhHHHHHHHHHHhCCcchhhhhHHHHHHHHHH
Confidence            34699999999999999999999999999999999964

>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []

Probab=97.10  E-value=0.00063  Score=47.33  Aligned_cols=33  Identities=42%  Similarity=0.499  Sum_probs=28.2

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          367 LSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       367 Ls~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      |+.|+++|||++++++||+.-++  |.+||+.|.+
T Consensus         1 l~~l~v~eLk~~l~~~gL~~~G~--K~~Li~Rl~~   33 (35)
T PF02037_consen    1 LSKLTVAELKEELKERGLSTSGK--KAELIERLKE   33 (35)
T ss_dssp             TTTSHHHHHHHHHHHTTS-STSS--HHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHCCCCCCCC--HHHHHHHHHH
Confidence            67899999999999999998444  9999999864

In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....

>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A

Probab=96.93  E-value=0.0007  Score=48.31  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=23.7

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          367 LSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       367 Ls~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      +.+|||++||++-.++||.=-++.+|+|||+++++
T Consensus         1 p~sltV~~Lk~iL~~~~I~~ps~AkKaeLv~L~~~   35 (35)
T PF12949_consen    1 PKSLTVAQLKRILDEHGIEFPSNAKKAELVALFNQ   35 (35)
T ss_dssp             STT--SHHHHHHHHHHT---SSS--SHHHHHH---
T ss_pred             CCcCcHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC
Confidence            46899999999999999999999999999999863

>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

Probab=96.13  E-value=0.011  Score=40.79  Aligned_cols=33  Identities=39%  Similarity=0.493  Sum_probs=28.6

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          367 LSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       367 Ls~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      +..|++++|+++++++||.- +. +|.+||+.|..
T Consensus         1 ~~~l~~~~Lk~~l~~~gl~~-~G-~K~~Lv~Rl~~   33 (35)
T smart00513        1 LAKLKVSELKDELKKRGLST-SG-TKAELVDRLLE   33 (35)
T ss_pred             CCcCcHHHHHHHHHHcCCCC-CC-CHHHHHHHHHH
Confidence            46899999999999999996 33 79999998864

>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70)

Probab=93.44  E-value=0.077  Score=55.84  Aligned_cols=37  Identities=27%  Similarity=0.489  Sum_probs=33.0

Q ss_pred             ccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          363 ENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       363 ~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      .++.|..|||++||++++.+||++  .-||+|||+.|..
T Consensus       545 ~~~~l~kltv~~Lk~~l~~~g~~~--~~kKadLi~~i~~  581 (584)
T TIGR00578       545 KKGTLGKLTVSVLKDFCRAYGLRS--GSKKQELLDALTK  581 (584)
T ss_pred             HcCChhhccHHHHHHHHHHcCCCc--cccHHHHHHHHHH
Confidence            568999999999999999999995  4479999999864

Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.

>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues []

Probab=90.77  E-value=0.57  Score=32.93  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             CCCCCHHHHHHHHHHcCCCCCCCC-CHHHHHHHHhc
Q 015565          367 LSALKLPELRALAKSRGVKGFSKM-KKAVLLELLAG  401 (404)
Q Consensus       367 Ls~MtvaELK~LAKe~GIKGySkM-KKaELIeaLq~  401 (404)
                      |.+|+-.+|++..+++||..-... +|.+||++++.
T Consensus         1 fdtWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~   36 (38)
T PF10281_consen    1 FDTWSDSDLKSWLKSHGIPVPKSAKTRDELLKLAKK   36 (38)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence            578999999999999999998888 99999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	404
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 2e-10
 Identities = 55/387 (14%), Positives = 110/387 (28%), Gaps = 106/387 (27%)

Query: 55  SKGASFACRASSGSYRRNPDF-----SRQNRNGYRGRNRQNEERDSIDDESELLSSRNGP 109
           SK      +      R N  F       + R          E+RD + +++++ +  N  
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 110 ILSLSNSPKFQATSTPGPREKEIVELFRKVQVQLRER------------------AAARE 151
                             R +  ++L R+  ++LR                         
Sbjct: 133 ------------------RLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 152 DKKTESMQGQ-----RKESETVDSLLKLLRK--HSVEQGKRKSSSGSSNDFSLEQDEPNG 204
            K    M  +      K   + +++L++L+K  + ++      S  SSN   L       
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHS--- 229

Query: 205 SHIEDKSTSFFDSSSRART-----ESREPNV-SSFTRPASNFRRRSPVTQFKYQPVYSSE 258
             I+ +      S             +     ++F     N   +  +T           
Sbjct: 230 --IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLSCKILLT----------- 271

Query: 259 ETEN-SISRLDSSGKGKKSSLEIHTDPKRESESEPELETEPEASFADGEVYD---EASDV 314
            T    ++   S+      SL+ H+      E +  L       + D    D   E    
Sbjct: 272 -TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLDCRPQDLPREVLTT 325

Query: 315 ESNVITDGSLYDEVLENEPNIIDDSVYRVSEEGESSDNDEDENKQEEIENGDLSALKLPE 374
               +   S+  E + +     D+  ++            + +K   I    L+ L+  E
Sbjct: 326 NPRRL---SIIAESIRDGLATWDN--WK----------HVNCDKLTTIIESSLNVLEPAE 370

Query: 375 LRALAKSRGVKGFSKMKK--AVLLELL 399
            R +     V  F        +LL L+
Sbjct: 371 YRKMFDRLSV--FPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	404
2out_A	131	MU-like prophage flumu protein GP35, protein HI150	98.17
2do1_A	55	Nuclear protein HCC-1; SAP domain, structural geno	96.9
1h1j_S	51	THO1 protein; SAP domain, DNA binding; NMR {Saccha	96.76
1zrj_A	50	E1B-55KDA-associated protein 5 isoform C; SAP doma	96.54
2kvu_A	75	MKL/myocardin-like protein 1; SAP motif, DNA/RNA b	96.33
1jjr_A	151	KU70, thyroid autoantigen; DNA repair protein, pro	95.52
2rnn_A	114	E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind	95.15
1jjr_A	151	KU70, thyroid autoantigen; DNA repair protein, pro	95.0
1jey_A	609	KU70; double-strand DNA break repair, non-homologo	89.93
2ld7_A	94	Histone deacetylase complex subunit SAP30; transcr	86.74

>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1

Probab=98.17  E-value=1.4e-06  Score=75.90  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=36.5

Q ss_pred             cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcC
Q 015565          364 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAGS  402 (404)
Q Consensus       364 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~~  402 (404)
                      ..+|..|||+|||++++++||+++++|+|.|||++|...
T Consensus        86 ~~~l~~lTV~ELKa~Lde~gIe~~ssakKaELiaLL~~a  124 (131)
T 2out_A           86 STDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAPA  124 (131)
T ss_dssp             CCSSTTCCSHHHHHHHHHHTCCCSSSCCSHHHHHHCCSC
T ss_pred             cCccccccHHHHHHHHHHcCCcccccCCHHHHHHHHHHh
Confidence            468999999999999999999999999999999999763

>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=96.90  E-value=0.00099  Score=50.31  Aligned_cols=35  Identities=31%  Similarity=0.388  Sum_probs=30.9

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      .+|..|||+|||++++.+|+.. +. +|+|||+.|+.
T Consensus         8 ~~l~klkV~eLK~~L~~rGL~~-~G-~KaeLieRL~~   42 (55)
T 2do1_A            8 VELHKLKLAELKQECLARGLET-KG-IKQDLIHRLQA   42 (55)
T ss_dssp             CCTTTSCHHHHHHHHHHHTCCC-CS-CHHHHHHHHHH
T ss_pred             cCHHHCcHHHHHHHHHHcCCCC-CC-cHHHHHHHHHH
Confidence            4799999999999999999986 33 79999999964

>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A

Probab=96.76  E-value=0.0013  Score=48.90  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=30.3

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      .+|+.|||+|||++++.+||.. + =+|+|||+.|+.
T Consensus         3 ~~~~kltV~eLK~~Lk~RGL~~-~-G~KadLieRL~~   37 (51)
T 1h1j_S            3 ADYSSLTVVQLKDLLTKRNLSV-G-GLKNELVQRLIK   37 (51)
T ss_dssp             CSGGGCCHHHHHHHHHHTTCCC-C-SSHHHHHHHHHH
T ss_pred             chHHHCcHHHHHHHHHHcCCCC-C-CcHHHHHHHHHH
Confidence            4789999999999999999986 3 349999999864

>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1

Probab=96.54  E-value=0.0025  Score=47.32  Aligned_cols=35  Identities=37%  Similarity=0.398  Sum_probs=30.5

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      .+|+.|+|+|||+.++.+||..  +=+|+|||+.|+.
T Consensus         8 ~~~~klkV~eLK~eLk~RgL~~--~G~Ka~Li~RL~~   42 (50)
T 1zrj_A            8 MDVRRLKVNELREELQRRGLDT--RGLKAELAERLQA   42 (50)
T ss_dssp             CCGGGSCHHHHHHHHHHTTCCC--CSCHHHHHHHHHH
T ss_pred             CCHHHCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHH
Confidence            5899999999999999999986  3359999999864

>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A

Probab=96.33  E-value=0.0042  Score=49.84  Aligned_cols=35  Identities=31%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      .+|+.|||+|||++.+.+||.. +. +|+|||+.|+.
T Consensus        24 ~~l~klkVaeLK~eLk~RGL~~-sG-~KaeLIeRL~~   58 (75)
T 2kvu_A           24 ANLDDMKVAELKQELKLRSLPV-SG-TKTELIERLRA   58 (75)
T ss_dssp             TTTTTSCHHHHHHHHHHTTCCC-CS-CHHHHHHHHHH
T ss_pred             HHHHHCcHHHHHHHHHHcCCCC-CC-CHHHHHHHHHH
Confidence            3899999999999999999986 33 59999999964

>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}

Probab=95.15  E-value=0.015  Score=49.63  Aligned_cols=35  Identities=29%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      ..|..|||+|||++++++|+...+  +|+|||+.|+.
T Consensus        35 ~~l~kLtVaELK~~cr~~GL~~sG--kKaeLi~RI~~   69 (114)
T 2rnn_A           35 TLMELLKVSELKDICRSVSFPVSG--RKAVLQDLIRN   69 (114)
T ss_dssp             HHHTTCCHHHHHHHHHHTTCCTTS--CHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHcCCCcCC--cHHHHHHHHHH
Confidence            468999999999999999998533  59999999863

>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B

Probab=89.93  E-value=0.059  Score=54.65  Aligned_cols=37  Identities=35%  Similarity=0.566  Sum_probs=0.0

Q ss_pred             ccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          363 ENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       363 ~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      ..+.|..|||++||++++.+|++  ...||+|||+.|..
T Consensus       569 ~~g~l~~~tv~~Lk~~l~~~~~~--~~~kK~~li~~i~~  605 (609)
T 1jey_A          569 SKGTLGKFTVPMLKEACRAYGLK--SGLKKQELLEALTK  605 (609)
T ss_dssp             ---------------------------------------
T ss_pred             HCCCchhccHHHHHHHHHHcCCC--CCCcHHHHHHHHHH
Confidence            44789999999999999999987  57899999999864

>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}

Probab=86.74  E-value=1.6  Score=36.12  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=34.5

Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          365 GDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       365 ~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      -+|..|.+.-|++..+..+|.....+.|.+|+.+++.
T Consensus        22 vdf~kL~~~tLrrY~r~y~L~~~~~~sK~qLa~aV~k   58 (94)
T 2ld7_A           22 VDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGC   58 (94)
T ss_dssp             CCCSSSCHHHHHHHHHHTTCCCCSSCCHHHHHHHHHH
T ss_pred             cCHHHCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            4899999999999999999999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	404
d1jeqa1	51	a.140.2.1 (A:559-609) DNA binding C-terminal domai	8e-04

>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: DNA binding C-terminal domain of ku70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 8e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 355 DENKQEEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELL 399
           +E  +  I  G L    +P L+   ++ G+K  S +KK  LLE L
Sbjct: 3   EEELKTHISKGTLGKFTVPMLKEACRAYGLK--SGLKKQELLEAL 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	404
d1a62a1	47	Rho termination factor, N-terminal domain {Escheri	98.14
d1jeqa1	51	DNA binding C-terminal domain of ku70 {Human (Homo	97.66
d1h1js_	44	S/mar DNA-binding protein Tho1 {Baker's yeast (Sac	97.57
d1zrja1	37	Heterogeneous nuclear ribonucleoprotein U-like pro	96.8
d2do1a1	42	Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId	89.77

>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: Rho N-terminal domain-like
family: Rho termination factor, N-terminal domain
domain: Rho termination factor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=5.9e-07  Score=64.45  Aligned_cols=35  Identities=20%  Similarity=0.406  Sum_probs=32.8

Q ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHh
Q 015565          366 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLA  400 (404)
Q Consensus       366 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq  400 (404)
                      +|..++++||.+||+++||++|++|+|.|||-+|-
T Consensus         5 eLk~k~~~EL~~iA~~lgIen~~~lrKQeLif~IL   39 (47)
T d1a62a1           5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAIL   39 (47)
T ss_dssp             HHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence            47889999999999999999999999999999883

>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: DNA binding C-terminal domain of ku70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.6e-05  Score=57.51  Aligned_cols=40  Identities=33%  Similarity=0.517  Sum_probs=34.5

Q ss_pred             hhhccCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          360 EEIENGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       360 ~~~~~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      +.....+|+.|||++||++++++|++. ++ +|+|||+.|..
T Consensus         8 ~~~~~~~L~kltV~~LK~~lk~~gL~~-sG-kKa~Li~Ri~~   47 (51)
T d1jeqa1           8 THISKGTLGKFTVPMLKEACRAYGLKS-GL-KKQELLEALTK   47 (51)
T ss_dssp             HHHHHTCGGGCCHHHHHHHHHHTTCCC-CS-SHHHHHHHHHH
T ss_pred             HHhccCcHhhCcHHHHHHHHHHcCCCC-CC-cHHHHHHHHHH
Confidence            344567899999999999999999997 44 99999999864

>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: S/mar DNA-binding protein Tho1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=3e-05  Score=54.68  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             cCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          364 NGDLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       364 ~~dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      ..+|+.|||+|||++++++||+- +. +|+|||+-|..
T Consensus         2 ~~dy~~ltv~eLK~~lk~rgL~~-sG-~Ka~Li~RL~~   37 (44)
T d1h1js_           2 SADYSSLTVVQLKDLLTKRNLSV-GG-LKNELVQRLIK   37 (44)
T ss_dssp             CCSGGGCCHHHHHHHHHHTTCCC-CS-SHHHHHHHHHH
T ss_pred             CCcHHHCcHHHHHHHHHHCCCCC-CC-CHHHHHHHHHH
Confidence            35899999999999999999996 44 79999999864

>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: Heterogeneous nuclear ribonucleoprotein U-like protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00058  Score=46.55  Aligned_cols=34  Identities=38%  Similarity=0.416  Sum_probs=29.9

Q ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          366 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       366 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      +|+.|+|+|||++++.+|+.. + =+|++||+-|+.
T Consensus         2 d~~~m~V~eLK~~Lk~rgL~~-s-G~Ka~Li~RL~~   35 (37)
T d1zrja1           2 DVRRLKVNELREELQRRGLDT-R-GLKAELAERLQA   35 (37)
T ss_dssp             CGGGSCHHHHHHHHHHTTCCC-C-SCHHHHHHHHHH
T ss_pred             ChHHCcHHHHHHHHHHCCCCC-C-CCHHHHHHHHHH
Confidence            688999999999999999986 3 369999998874

>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: LEM/SAP HeH motif
superfamily: SAP domain
family: SAP domain
domain: Nuclear protein hcc-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=0.23  Score=34.41  Aligned_cols=34  Identities=35%  Similarity=0.438  Sum_probs=28.4

Q ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Q 015565          366 DLSALKLPELRALAKSRGVKGFSKMKKAVLLELLAG  401 (404)
Q Consensus       366 dLs~MtvaELK~LAKe~GIKGySkMKKaELIeaLq~  401 (404)
                      .|..++++|||.-|-.+|+.-  +=+|.|||..|+.
T Consensus         2 el~klklaelkqec~argl~~--kgnk~dli~rlqa   35 (42)
T d2do1a1           2 ELHKLKLAELKQECLARGLET--KGIKQDLIHRLQA   35 (42)
T ss_dssp             CTTTSCHHHHHHHHHHHTCCC--CSCHHHHHHHHHH
T ss_pred             chhHhHHHHHHHHHHHccccc--cCcHHHHHHHHHH
Confidence            477899999999888888764  5599999998864