Citrus Sinensis ID: 015577

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
MAKDKKRNDQISKEKKKKGLGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSVSCFTL
ccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEc
ccccccccHHccHHHHHccccHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccccccEEEccccccHHHHHHHcHHcHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccccccHHcccccccccccccccccHHHccccccccccccccHHHHHHHHHccccccccccccccccEEEEccccccHccccccccHHHHHHHHHHHcccccHEEcccHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHccEHHHHHHHHHHHHHHHHcccccccccccccccccc
makdkkrndQISKEKkkkglgrgLWSVWAVIVVLFATAAVTTRTGSKIALfannqtschcssssqdsvkytgmvedcccdyetvdsvngevlHPLLQQLVTTPFFRYFKAklwcdcpfwpddgmcrlrdcsvcecpenefpepfkkpfhilpsddlmcqegkpeatvdrtldKRAFRgwietdnpwtnddetdngeMTYVNLLlnperytgytgpsarrIWDAVYtencpkwmaivpanpqtrpnppaktrplrwgknpelMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYleqaeydtgnheddLKTVSLMKQLlynpklqaacplpfdeaklwqgqsgpeLKQQIQEQFRNISALMDCVgcekcrlwgklqvLGLGTALKILFSVegqnhaaqsvscftl
makdkkrndqiskekkkkglgrglwSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPeatvdrtldkrafrgwietdnpwtnddetdnGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAivpanpqtrpnppaktrplrwgknpeLMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEqaeydtgnhedDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEgqnhaaqsvscftl
MAKDKKRNDQISkekkkkGLGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTschcssssqdsVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVcecpenefpepfkkpfHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSVSCFTL
*******************LGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCS****DSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMC********VDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVP****************RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQG*******QQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQ************
************************WSVWAVIVVLFATAAVTTRTGSKIA**AN******C*******VKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKK******************************RGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCP****************PAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVE**********CFTL
********************GRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQ*************KYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSVSCFTL
*****************KGLGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKK****************PEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVE**************
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAKDKKRNDQISKEKKKKGLGRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSVSCFTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query404 2.2.26 [Sep-21-2011]
Q9C7S7469 Endoplasmic oxidoreductin yes no 0.883 0.761 0.708 1e-157
Q7X9I4472 Endoplasmic oxidoreductin no no 0.834 0.713 0.674 1e-141
Q6DD71465 ERO1-like protein alpha O N/A no 0.774 0.673 0.368 7e-54
B6CVD7468 ERO1-like protein alpha O yes no 0.866 0.747 0.330 7e-53
A5PJN2468 ERO1-like protein alpha O yes no 0.779 0.673 0.356 8e-53
Q8R4A1464 ERO1-like protein alpha O yes no 0.779 0.678 0.350 1e-52
Q96HE7468 ERO1-like protein alpha O yes no 0.779 0.673 0.356 2e-52
Q8R180464 ERO1-like protein alpha O yes no 0.759 0.661 0.348 3e-52
B1H1F9474 ERO1-like protein alpha O no no 0.779 0.664 0.360 2e-51
Q7T3D1489 ERO1-like protein alpha O yes no 0.846 0.699 0.334 3e-51
>sp|Q9C7S7|ERO1_ARATH Endoplasmic oxidoreductin-1 OS=Arabidopsis thaliana GN=AERO1 PE=1 SV=1 Back     alignment and function desciption
 Score =  555 bits (1430), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/377 (70%), Positives = 308/377 (81%), Gaps = 20/377 (5%)

Query: 41  TTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLV 100
           ++RT S +  F +++ SC CS   Q + KY GM+EDCCCDYETVD++N EVL+PLLQ LV
Sbjct: 35  SSRTNSNVGFFFSDRNSCSCSL--QKTGKYKGMIEDCCCDYETVDNLNTEVLNPLLQDLV 92

Query: 101 TTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPF-HILPSDDLMCQ 159
           TTPFFRY+K KLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPF   LPSDDL CQ
Sbjct: 93  TTPFFRYYKVKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFVPGLPSDDLKCQ 152

Query: 160 EGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARR 219
           EGKP+  VDRT+D RAFRGW+ET NPWT+DD+TD+GEM+YVNL LNPERYTGYTGPSARR
Sbjct: 153 EGKPQGAVDRTIDNRAFRGWVETKNPWTHDDDTDSGEMSYVNLQLNPERYTGYTGPSARR 212

Query: 220 IWDAVYTENCPKWMA------------IVPANPQTRPNPPAKTRPL-----RWGKNPELM 262
           IWD++Y+ENCPK+ +            ++     +     A    L     +WG+N ELM
Sbjct: 213 IWDSIYSENCPKYSSGETCPEKKVLYKLISGLHSSISMHIAADYLLDESRNQWGQNIELM 272

Query: 263 YDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPK 322
           YDR+LR+ DRVRN+YFT+LFVLRAVTKAT YLEQAEYDTGNH +DLKT SL+KQLLY+PK
Sbjct: 273 YDRILRHPDRVRNMYFTYLFVLRAVTKATAYLEQAEYDTGNHAEDLKTQSLIKQLLYSPK 332

Query: 323 LQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTA 382
           LQ ACP+PFDEAKLWQGQSGPELKQQIQ+QFRNISALMDCVGCEKCRLWGKLQV GLGTA
Sbjct: 333 LQTACPVPFDEAKLWQGQSGPELKQQIQKQFRNISALMDCVGCEKCRLWGKLQVQGLGTA 392

Query: 383 LKILFSVEGQNHAAQSV 399
           LKILFSV  Q+   Q++
Sbjct: 393 LKILFSVGNQDIGDQTL 409
Essential oxidoreductase that oxidizes proteins in the endoplasmic reticulum to produce disulfide bonds. Acts by oxidizing directly PDI isomerase through a direct disulfide exchange. Does not act as a direct oxidant of folding substrate, but relies on PDI to transfer oxidizing equivalent. Does not oxidize all PDI related proteins, suggesting that it can discriminate between PDI and related proteins. Its reoxidation probably involves electron transfer to molecular oxygen via FAD. Acts independently of glutathione. May be responsible for a significant proportion of reactive oxygen species (ROS) in the cell, thereby being a source of oxidative stress.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: -
>sp|Q7X9I4|ERO2_ARATH Endoplasmic oxidoreductin-2 OS=Arabidopsis thaliana GN=AERO2 PE=1 SV=1 Back     alignment and function description
>sp|Q6DD71|ERO1A_XENLA ERO1-like protein alpha OS=Xenopus laevis GN=ero1l PE=2 SV=1 Back     alignment and function description
>sp|B6CVD7|ERO1A_PIG ERO1-like protein alpha OS=Sus scrofa GN=ERO1L PE=2 SV=1 Back     alignment and function description
>sp|A5PJN2|ERO1A_BOVIN ERO1-like protein alpha OS=Bos taurus GN=ERO1L PE=2 SV=1 Back     alignment and function description
>sp|Q8R4A1|ERO1A_RAT ERO1-like protein alpha OS=Rattus norvegicus GN=Ero1l PE=1 SV=1 Back     alignment and function description
>sp|Q96HE7|ERO1A_HUMAN ERO1-like protein alpha OS=Homo sapiens GN=ERO1L PE=1 SV=2 Back     alignment and function description
>sp|Q8R180|ERO1A_MOUSE ERO1-like protein alpha OS=Mus musculus GN=Ero1l PE=1 SV=2 Back     alignment and function description
>sp|B1H1F9|ERO1A_XENTR ERO1-like protein alpha OS=Xenopus tropicalis GN=ero1l PE=2 SV=1 Back     alignment and function description
>sp|Q7T3D1|ERO1A_DANRE ERO1-like protein alpha OS=Danio rerio GN=ero1l PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
224115326470 predicted protein [Populus trichocarpa] 0.970 0.834 0.707 1e-168
224056607481 predicted protein [Populus trichocarpa] 0.950 0.798 0.716 1e-168
356530543465 PREDICTED: endoplasmic oxidoreductin-2-l 0.950 0.825 0.686 1e-158
356556515465 PREDICTED: endoplasmic oxidoreductin-2-l 0.950 0.825 0.681 1e-157
359483898487 PREDICTED: endoplasmic oxidoreductin-1-l 0.938 0.778 0.674 1e-157
297740752499 unnamed protein product [Vitis vinifera] 0.938 0.759 0.674 1e-157
297841969469 hypothetical protein ARALYDRAFT_476357 [ 0.883 0.761 0.713 1e-156
15218421469 endoplasmic oxidoreductin-1 [Arabidopsis 0.883 0.761 0.708 1e-155
147841803 589 hypothetical protein VITISV_002206 [Viti 0.871 0.597 0.692 1e-154
357450507464 Endoplasmic oxidoreductin-1 [Medicago tr 0.913 0.795 0.693 1e-154
>gi|224115326|ref|XP_002317004.1| predicted protein [Populus trichocarpa] gi|222860069|gb|EEE97616.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 297/420 (70%), Positives = 334/420 (79%), Gaps = 28/420 (6%)

Query: 6   KRNDQISKEKKKKGLGRGLWSVWAVI-------VVLFATAAVTTRTGSKI-ALFANNQTS 57
           K+N+   K K++    R  WS W +I       + +     V+  T SKI +L  +N  S
Sbjct: 3   KKNESF-KPKQESKKERKRWSSWGLIGALVAVALAVVVAVTVSLMTASKIGSLINSNNKS 61

Query: 58  CHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCP 117
           C C SS QDS KY G++EDCCCDYE+VDSVNGEVLHPLLQ+LVTTPFFRYFK KLWCDCP
Sbjct: 62  CQCPSS-QDSGKYKGVIEDCCCDYESVDSVNGEVLHPLLQELVTTPFFRYFKVKLWCDCP 120

Query: 118 FWPDDGMCRLRDCSVCECPENEFPEPFKKPF-HILPSDDLMCQEGKPEATVDRTLDKRAF 176
           FWPDDGMCRLRDCSVCECPENEFPEP KKPF + LP+DD+ CQEG P+A VDRTLD+RAF
Sbjct: 121 FWPDDGMCRLRDCSVCECPENEFPEPLKKPFLYGLPADDVACQEGNPQAAVDRTLDRRAF 180

Query: 177 RGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKW---- 232
           +GWIETDNPWTNDDETDN EMTYVNLLLNPERYTGY GPSARRIWDAVY+ENCPK+    
Sbjct: 181 KGWIETDNPWTNDDETDNDEMTYVNLLLNPERYTGYVGPSARRIWDAVYSENCPKYPSGE 240

Query: 233 --------MAIVPANPQTRPNPPAKTRPL-----RWGKNPELMYDRVLRYQDRVRNLYFT 279
                     ++     +     A    L     +WG+NPELMYDRVLRY DRVRNLYFT
Sbjct: 241 MCQEKKVLYKLISGLHSSISIHIAVDYLLDESTNKWGQNPELMYDRVLRYPDRVRNLYFT 300

Query: 280 FLFVLRAVTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQG 339
           FLFVLRAVTKA DYLEQAEYDTGNH +DL+T SL++QLL+NPKLQAACPLPFDEAKLWQG
Sbjct: 301 FLFVLRAVTKAADYLEQAEYDTGNHTEDLETQSLVRQLLHNPKLQAACPLPFDEAKLWQG 360

Query: 340 QSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSV 399
           QSGPELKQQIQ+QFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSV+GQN  ++S+
Sbjct: 361 QSGPELKQQIQKQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVDGQNQPSESL 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056607|ref|XP_002298934.1| predicted protein [Populus trichocarpa] gi|222846192|gb|EEE83739.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356530543|ref|XP_003533840.1| PREDICTED: endoplasmic oxidoreductin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356556515|ref|XP_003546570.1| PREDICTED: endoplasmic oxidoreductin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|359483898|ref|XP_002271644.2| PREDICTED: endoplasmic oxidoreductin-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740752|emb|CBI30934.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297841969|ref|XP_002888866.1| hypothetical protein ARALYDRAFT_476357 [Arabidopsis lyrata subsp. lyrata] gi|297334707|gb|EFH65125.1| hypothetical protein ARALYDRAFT_476357 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15218421|ref|NP_177372.1| endoplasmic oxidoreductin-1 [Arabidopsis thaliana] gi|50400631|sp|Q9C7S7.1|ERO1_ARATH RecName: Full=Endoplasmic oxidoreductin-1; Flags: Precursor gi|12323665|gb|AAG51798.1|AC067754_14 disulfide bond formation protein, putative; 78451-75984 [Arabidopsis thaliana] gi|31711714|gb|AAP68213.1| At1g72280 [Arabidopsis thaliana] gi|110743908|dbj|BAE99788.1| like disulfide bond formation protein [Arabidopsis thaliana] gi|332197177|gb|AEE35298.1| endoplasmic oxidoreductin-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147841803|emb|CAN62205.1| hypothetical protein VITISV_002206 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357450507|ref|XP_003595530.1| Endoplasmic oxidoreductin-1 [Medicago truncatula] gi|355484578|gb|AES65781.1| Endoplasmic oxidoreductin-1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
TAIR|locus:2207031469 ERO1 "endoplasmic reticulum ox 0.514 0.443 0.621 2.4e-138
ZFIN|ZDB-GENE-060929-744488 zgc:153032 "zgc:153032" [Danio 0.418 0.346 0.372 2.2e-55
UNIPROTKB|A5PJN2468 ERO1L "ERO1-like protein alpha 0.420 0.363 0.370 1e-53
UNIPROTKB|E1C917467 ERO1LB "Uncharacterized protei 0.418 0.361 0.372 1.8e-53
UNIPROTKB|E2RNW5468 ERO1L "Uncharacterized protein 0.420 0.363 0.370 2.9e-53
UNIPROTKB|Q96HE7468 ERO1L "ERO1-like protein alpha 0.420 0.363 0.375 3.9e-53
UNIPROTKB|B6CVD7468 ERO1L "ERO1-like protein alpha 0.420 0.363 0.370 5.9e-53
RGD|621713464 Ero1l "ERO1-like (S. cerevisia 0.398 0.346 0.364 6.6e-53
UNIPROTKB|F8WFP9464 Ero1l "ERO1-like protein alpha 0.398 0.346 0.364 6.6e-53
UNIPROTKB|E1C0W7463 ERO1L "Uncharacterized protein 0.398 0.347 0.368 7.2e-53
TAIR|locus:2207031 ERO1 "endoplasmic reticulum oxidoreductins 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 732 (262.7 bits), Expect = 2.4e-138, Sum P(2) = 2.4e-138
 Identities = 133/214 (62%), Positives = 157/214 (73%)

Query:    22 RGLWSVW--AVIVVLFATAAVTTRTGSKIALFANNQTXXXXXXXXXXXVKYTGMVEDCCC 79
             R  W  W  A +VV+F   AV++RT S +  F +++             KY GM+EDCCC
Sbjct:    15 RKTWR-WPLATLVVVFLAVAVSSRTNSNVGFFFSDRNSCSCSLQKTG--KYKGMIEDCCC 71

Query:    80 DYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVXXXXXXX 139
             DYETVD++N EVL+PLLQ LVTTPFFRY+K KLWCDCPFWPDDGMCRLRDCSV       
Sbjct:    72 DYETVDNLNTEVLNPLLQDLVTTPFFRYYKVKLWCDCPFWPDDGMCRLRDCSVCECPENE 131

Query:   140 XXXXXXX-XXHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMT 198
                         LPSDDL CQEGKP+  VDRT+D RAFRGW+ET NPWT+DD+TD+GEM+
Sbjct:   132 FPEPFKKPFVPGLPSDDLKCQEGKPQGAVDRTIDNRAFRGWVETKNPWTHDDDTDSGEMS 191

Query:   199 YVNLLLNPERYTGYTGPSARRIWDAVYTENCPKW 232
             YVNL LNPERYTGYTGPSARRIWD++Y+ENCPK+
Sbjct:   192 YVNLQLNPERYTGYTGPSARRIWDSIYSENCPKY 225
GO:0003756 "protein disulfide isomerase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005789 "endoplasmic reticulum membrane" evidence=IEA
GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0006984 "ER-nucleus signaling pathway" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
ZFIN|ZDB-GENE-060929-744 zgc:153032 "zgc:153032" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A5PJN2 ERO1L "ERO1-like protein alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C917 ERO1LB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNW5 ERO1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96HE7 ERO1L "ERO1-like protein alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B6CVD7 ERO1L "ERO1-like protein alpha" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|621713 Ero1l "ERO1-like (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F8WFP9 Ero1l "ERO1-like protein alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C0W7 ERO1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C7S7ERO1_ARATH1, ., 8, ., 4, ., -0.70820.88360.7611yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.8.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
pfam04137348 pfam04137, ERO1, Endoplasmic Reticulum Oxidoreduct 1e-123
COG5061425 COG5061, ERO1, Oxidoreductin, endoplasmic reticulu 4e-46
>gnl|CDD|217920 pfam04137, ERO1, Endoplasmic Reticulum Oxidoreductin 1 (ERO1) Back     alignment and domain information 
 Score =  360 bits (926), Expect = e-123
 Identities = 142/336 (42%), Positives = 190/336 (56%), Gaps = 46/336 (13%)

Query: 90  EVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDD-GMCRLRDCSVCECPENEFPEPFKKPF 148
           E + PLL  L +T FFRYFK  L  +CPFWPDD G+C  R C+VC C E+E PE +K   
Sbjct: 1   EKIRPLLNSLTSTDFFRYFKVNLDKECPFWPDDNGLCGSRACAVCTCDESEIPEVWKPS- 59

Query: 149 HILPSDDLMCQEGKPEATVDRTLDK-RAFRGWIETDNP--WTNDDETDNGEMTYVNLLLN 205
                +   C+EGK    +D +L   RA   W +TD+   +   D+ D+ +  YV+LLLN
Sbjct: 60  ---ELEGSACKEGKDFGELDCSLSDCRASCKWKDTDDLDDYCVVDDEDSDKGVYVDLLLN 116

Query: 206 PERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPA----------------- 248
           PER+TGY GPSA RIW A+Y ENC          P  + +                    
Sbjct: 117 PERFTGYKGPSAARIWRAIYEENCF---------PIGKVDNTCCLEKRVFYRLISGLHAS 167

Query: 249 ----------KTRPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAE 298
                       +  +WG N EL ++RV  + DR+RNLYFT+  VLRA+ K   YLE   
Sbjct: 168 ISTHLSADYLNDKTGKWGPNLELFFERVGNHPDRLRNLYFTYALVLRALAKLKPYLENFT 227

Query: 299 YDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISA 358
           ++TGN  +D +T  L+K LL   +L ++ P  FDE  L++     +LK++ + +FRNIS 
Sbjct: 228 FNTGNDLEDTETKLLLKDLLS--ELNSSSPKHFDENLLFKNDEAIKLKEEFRRRFRNISR 285

Query: 359 LMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNH 394
           +MDCVGCEKCRLWGKLQ  GLGTALKILF  + + H
Sbjct: 286 IMDCVGCEKCRLWGKLQTNGLGTALKILFEDDNKQH 321

Members of this family are required for the formation of disulphide bonds in the ER. Length = 348
>gnl|CDD|227393 COG5061, ERO1, Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 404
KOG2608469 consensus Endoplasmic reticulum membrane-associate 100.0
PF04137357 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 100.0
COG5061425 ERO1 Oxidoreductin, endoplasmic reticulum membrane 100.0
>KOG2608 consensus Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-125  Score=946.36  Aligned_cols=357  Identities=47%  Similarity=0.852  Sum_probs=323.8

Q ss_pred             CcchHHHHHHHHHHHHHhhhhcccCcccccccCCCCcccccCCCCCCccccccccCcccchhhhhhhhhchhhHHhHHhh
Q 015577           21 GRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLV  100 (404)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~vdDc~c~~etId~~N~~~i~P~L~~L~  100 (404)
                      +||.|+++++.+|.+++ .++       +.|..  ..|||+        +.|+|+||+||++|||++|+++|+|+|+.|+
T Consensus         2 ~r~~~l~~l~~~~~l~~-~v~-------~~~~~--~~~~ck--------~~~~i~dc~c~~~~i~nln~~~i~~~lq~l~   63 (469)
T KOG2608|consen    2 KRAIALLGLIAAVKLIS-VVN-------TQFAS--SICFCK--------VDGIIEDCTCDYETIDNLNNEVIYPLLQKLL   63 (469)
T ss_pred             chhHHHHHHHHHHHHHH-hcc-------ccccc--cceeee--------cccccccCCCCHHHHHHhhccccchHHHHHh
Confidence            34788777777777776 344       22222  689999        7899999999999999999999999999999


Q ss_pred             cCCCceEEeccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCC-ccccccCCC-CcccccccchhhhcC
Q 015577          101 TTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSD-DLMCQEGKP-EATVDRTLDKRAFRG  178 (404)
Q Consensus       101 ~t~fFRyfKVNL~~~CPFW~dd~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~~-~~~c~~~~~-~~~vd~~l~~~~~~~  178 (404)
                      ++||||||||||+++||||+||++|++++|+|++|+|+|||++||++.++++++ -..|+.+++ ++++|++++.++|..
T Consensus        64 ksdffryYkvnL~~~CpFW~Dd~~C~~r~C~V~~c~e~evPe~~k~~~~~~~~~~~~e~~~~~~~~~~~d~tl~dr~f~~  143 (469)
T KOG2608|consen   64 KSDFFRYYKVNLYRDCPFWPDDGMCLNRACSVEPCPEDEVPEGWKKSLGKYEPELCSECEDADSELGAKDRTLSDRAFLL  143 (469)
T ss_pred             cccchhheeccccCCCCCCCchhhhhhcCCccccCcccccchhhhhhhhccChhhhhhhhhccccccchhcccccccccc
Confidence            999999999999999999999999999999999999999999999966666552 234655666 889999999999999


Q ss_pred             ccccCCC-CCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCC------C------CCCC-------
Q 015577          179 WIETDNP-WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWM------A------IVPA-------  238 (404)
Q Consensus       179 w~~~d~~-~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~------~------~~~C-------  238 (404)
                      |..+|+. ||..|+.++++++||||++||||||||+|++|+|||++||+||||++.      .      .++|       
T Consensus       144 w~~~d~~~~C~~dd~~s~~~~YVdLl~NPERyTGY~G~sa~rIW~sIYeeNCf~~~~~~~~~~~~~~~l~g~clEkrvfY  223 (469)
T KOG2608|consen  144 WDKHDDLSFCEVDDEESPEMVYVDLLLNPERYTGYKGPSAARIWRSIYEENCFKPDPLFDPNSIPYNWLEGLCLEKRVFY  223 (469)
T ss_pred             ccccCCccceeecCCCCCCcEEEehhcChhhhcCCCCCCHHHHHHHHHHhhCCCCCcccCCcccccchhccccHHHHHHH
Confidence            9999998 999888889999999999999999999999999999999999999875      1      3677       


Q ss_pred             -----CCCCccCCCCCC----CCC-CCCCChHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCccccH
Q 015577          239 -----NPQTRPNPPAKT----RPL-RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDL  308 (404)
Q Consensus       239 -----LHsSIsiHl~~~----~~~-~wgpNl~~F~~Rv~~~PeRl~NLYF~Y~~vLRAl~Ka~p~L~~~~f~tGn~~eD~  308 (404)
                           |||||+||||++    .++ .||||+++|+.||++||+||+||||+|++|+|||.||+|||++.+|+||+..||+
T Consensus       224 rLISGlHsSIstHl~~~~y~~~e~~~WgpNl~~f~~Rf~~~P~Rl~NlYF~Yll~lrAl~Ki~pyl~~~~~~tgn~~eD~  303 (469)
T KOG2608|consen  224 RLISGLHSSISTHLCSFYYLLEETKRWGPNLDLFRARFGNGPDRLRNLYFTYLLVLRALGKIAPYLEELDFYTGNVEEDA  303 (469)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCCcccccCcCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhcchhhhhhhcccccccch
Confidence                 999999999995    444 6999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCccccccCCCCcccccccCCC-CcchHHHHHHHHHhhhhhhhcCccCCccccchhhhhHHHHHHHHHhc
Q 015577          309 KTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQ-SGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILF  387 (404)
Q Consensus       309 ~t~~ll~~Ll~~~~l~~sc~~~FDE~~lF~~~-~~~~LK~efr~~FrNISrIMDCVgCeKCRLWGKLQt~GLgTALKILF  387 (404)
                      +|+.+|.++++.++   +||.||||+.||+|+ .++.||++||+|||||||||||||||||||||||||+||||||||||
T Consensus       304 e~k~~i~~il~~i~---~~p~hFdE~~~f~gd~~a~~lKe~fr~hFrnISrIMDCVgCdKCRLWGKlQt~GlGTALKILf  380 (469)
T KOG2608|consen  304 ETKSLLSDILSQIK---AFPKHFDEAELFAGDSEAPALKEEFRKHFRNISRIMDCVGCDKCRLWGKLQTQGLGTALKILF  380 (469)
T ss_pred             HHHHHHHHHHHHHh---hCccccchHhhhcccccchhHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHHHHh
Confidence            99999999998765   699999999999999 78999999999999999999999999999999999999999999999


Q ss_pred             CcCcCCCcCcc
Q 015577          388 SVEGQNHAAQS  398 (404)
Q Consensus       388 s~~~~~~~~~~  398 (404)
                      +..+.++..+.
T Consensus       381 s~~~~~~~~~~  391 (469)
T KOG2608|consen  381 SVKDADPFTQL  391 (469)
T ss_pred             ccCCCCccccc
Confidence            99986654443

>PF04137 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1); InterPro: IPR007266 Members of this family are required for the formation of disulphide bonds in the endoplasmic reticulum [, ] Back     alignment and domain information
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
3ahq_A465 Hyperactive Human Ero1 Length = 465 6e-50
3ahr_A465 Inactive Human Ero1 Length = 465 9e-50
3nvj_A393 Crystal Structure Of The C143aC166A MUTANT OF ERO1P 7e-30
1rq1_A386 Structure Of Ero1p, Source Of Disulfide Bonds For O 8e-30
3m31_A388 Structure Of The C150aC295A MUTANT OF S. CEREVISIAE 1e-29
1rp4_A389 Structure Of Ero1p, Source Of Disulfide Bonds For O 1e-28
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1 Length = 465 Back     alignment and structure 
Iteration: 1

 Score =  194 bits (494), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 133/381 (34%), Positives = 186/381 (48%), Gaps = 66/381 (17%)
Query: 71  TGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDC 130
           +G ++DC CD ET+D  N   L P LQ+L+ + +FRY+K  L   CPFW D   C  RDC
Sbjct: 37  SGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDC 96
Query: 131 SVXXXXXXXXXXXXXXXXHILP--SDDLMCQEGKPE--ATVDRTLD---KRAFRGWIETD 183
           +V                +     +++L+ +  + E    VD +L    ++A   W + D
Sbjct: 97  AVKPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAVDESLSEETQKAVLQWTKHD 156
Query: 184 NPWTNDDETDN---GEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIV-PAN 239
           +   N  E D+    E  YV+LLLNPERYTGY GP A +IW+ +Y ENC K   I  P N
Sbjct: 157 DSSDNFAEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLN 216
Query: 240 P----------------------------------QTRPNPPAKTRPL--------RWGK 257
           P                                      N     R L        +WG 
Sbjct: 217 PLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVHLSARYLLQETWLEKKWGH 276
Query: 258 NP---ELMYDRVLRYQD---RVRNLYFTFLFVLRAVTKATDYLEQAEYD--TGNHEDDLK 309
           N    +  +D +L   +   R++NLYF +L  LRA++K   + E+ ++   TGN   D +
Sbjct: 277 NITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERPDFQLFTGNKIQDEE 336
Query: 310 TVSLMKQLLYNPKLQAACPLPFDEAKLWQG--QSGPELKQQIQEQFRNISALMDCVGCEK 367
              L+ ++L+  K   + PL FDE   + G  +   +LK+  +  FRNIS +MDCVGC K
Sbjct: 337 NKMLLLEILHEIK---SFPLHFDENSFFAGDKKEAHKLKEDFRLHFRNISRIMDCVGCFK 393
Query: 368 CRLWGKLQVLGLGTALKILFS 388
           CRLWGKLQ  GLGTALKILFS
Sbjct: 394 CRLWGKLQTQGLGTALKILFS 414
>pdb|3AHR|A Chain A, Inactive Human Ero1 Length = 465 Back     alignment and structure
>pdb|3NVJ|A Chain A, Crystal Structure Of The C143aC166A MUTANT OF ERO1P Length = 393 Back     alignment and structure
>pdb|1RQ1|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For Oxidative Protein Folding In The Cell Length = 386 Back     alignment and structure
>pdb|3M31|A Chain A, Structure Of The C150aC295A MUTANT OF S. CEREVISIAE ERO1P Length = 388 Back     alignment and structure
>pdb|1RP4|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For Oxidative Protein Folding In The Cell Length = 389 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
3ahq_A465 ERO1-like protein alpha; disulfide bond, PDI, redo 1e-123
3m31_A388 Endoplasmic oxidoreductin-1; disulfide mutant, dis 1e-112
>3ahq_A ERO1-like protein alpha; disulfide bond, PDI, redox, hyperactive human ERO1, oxidored; HET: FAD; 2.35A {Homo sapiens} PDB: 3ahr_A* Length = 465 Back     alignment and structure
 Score =  365 bits (937), Expect = e-123
 Identities = 130/410 (31%), Positives = 191/410 (46%), Gaps = 66/410 (16%)

Query: 52  ANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAK 111
            + +     +++ +   + +G ++DC CD ET+D  N   L P LQ+L+ + +FRY+K  
Sbjct: 18  RHGEEQPPETAAQRCFCQVSGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVN 77

Query: 112 LWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPSDDL----MCQEGKPEATV 167
           L   CPFW D   C  RDC+V     +E P+  K   +    +        ++ +    V
Sbjct: 78  LKRPCPFWNDISQCGRRDCAVKPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAV 137

Query: 168 DRTLD---KRAFRGWIETDNPWTN---DDETDNGEMTYVNLLLNPERYTGYTGPSARRIW 221
           D +L    ++A   W + D+   N    D+  + E  YV+LLLNPERYTGY GP A +IW
Sbjct: 138 DESLSEETQKAVLQWTKHDDSSDNFAEADDIQSPEAEYVDLLLNPERYTGYKGPDAWKIW 197

Query: 222 DAVYTENCPKWMAI-VPANPQTRPNPPAKTRPL--------------------------- 253
           + +Y ENC K   I  P NP       ++                               
Sbjct: 198 NVIYEENCFKPQTIKRPLNPLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINV 257

Query: 254 ---------------RWGKNPELMYDRVLR------YQDRVRNLYFTFLFVLRAVTKATD 292
                          +WG N      R            R++NLYF +L  LRA++K   
Sbjct: 258 HLSARYLLQETWLEKKWGHNITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLP 317

Query: 293 YLEQAEYD--TGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQS--GPELKQQ 348
           + E+ ++   TGN   D +   L+ ++L+  K   + PL FDE   + G      +LK+ 
Sbjct: 318 FFERPDFQLFTGNKIQDEENKMLLLEILHEIK---SFPLHFDENSFFAGDKKEAHKLKED 374

Query: 349 IQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQS 398
            +  FRNIS +MDCVGC KCRLWGKLQ  GLGTALKILFS +   +  +S
Sbjct: 375 FRLHFRNISRIMDCVGCFKCRLWGKLQTQGLGTALKILFSEKLIANMPES 424
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond, electron transport, endopl reticulum, FAD, flavoprotein, glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae} PDB: 1rp4_A* 1rq1_A* 3nvj_A* Length = 388 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
3ahq_A465 ERO1-like protein alpha; disulfide bond, PDI, redo 100.0
3m31_A388 Endoplasmic oxidoreductin-1; disulfide mutant, dis 100.0
>3ahq_A ERO1-like protein alpha; disulfide bond, PDI, redox, hyperactive human ERO1, oxidored; HET: FAD; 2.35A {Homo sapiens} PDB: 3ahr_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-124  Score=961.01  Aligned_cols=329  Identities=38%  Similarity=0.708  Sum_probs=259.8

Q ss_pred             CCCCcccccCCCCCCccccccccCcccchhhhhhhhhchhhHHhHHhhcCCCceEEeccCCCCCCCCCCCCCCCCCCccc
Q 015577           53 NNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDDGMCRLRDCSV  132 (404)
Q Consensus        53 ~~~~~c~c~~~~~~~~~~~G~vdDc~c~~etId~~N~~~i~P~L~~L~~t~fFRyfKVNL~~~CPFW~dd~~C~~~~C~V  132 (404)
                      +..+.|||+        ++|+|+||||+|+|||++|+++|+|+|++|+++||||||||||+++||||+|+++|++++|+|
T Consensus        27 ~~~~~c~c~--------~~g~v~Dc~c~~etId~~N~~~i~p~L~~L~~t~fFRyfkVnL~k~CPFW~d~~~C~~~~C~V   98 (465)
T 3ahq_A           27 TAAQRCFCQ--------VSGYLDDCTCDVETIDRFNNYRLFPRLQKLLESDYFRYYKVNLKRPCPFWNDISQCGRRDCAV   98 (465)
T ss_dssp             ----CEEEE--------CSSSSCEEECCHHHHHHHHHHTTHHHHHHHHHSHHHHEEEECCCCCCSSCC------------
T ss_pred             CCCCCcccC--------CCCccccCcCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCccCCcCCCCCee
Confidence            456789999        999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCc----cccccCCCCcccccccc---hhhhcCccccCCC---CCCCCCCCCCCceEeeC
Q 015577          133 CECPENEFPEPFKKPFHILPSDD----LMCQEGKPEATVDRTLD---KRAFRGWIETDNP---WTNDDETDNGEMTYVNL  202 (404)
Q Consensus       133 ~~c~e~eiP~~wr~~~~~~~~~~----~~c~~~~~~~~vd~~l~---~~~~~~w~~~d~~---~~~~De~~~~~~~YVDL  202 (404)
                      ++|+|+|||++||++..+++...    ..|++...++.||++++   ..+|.+|.++|++   +|..||+++++++||||
T Consensus        99 ~~c~e~eiP~~wr~~~~~~~~~~~~~~~~c~~~~~lg~vd~tls~~~~~~~~~w~~~dd~~~~fC~~dDe~~~~~~YVdL  178 (465)
T 3ahq_A           99 KPAQSDEVPDGIKSASYKYSEEANNLIEEAEQAERLGAVDESLSEETQKAVLQWTKHDDSSDNFAEADDIQSPEAEYVDL  178 (465)
T ss_dssp             ------------------------------CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHTTCC-------CCSCEEEEG
T ss_pred             ecCCcccCChhhcccccccchhhccccccccccccccccccccchhhhhhhhccccccCcccccccccCCCCCCceEEec
Confidence            99999999999999764443221    25776677889999888   3678999998764   45544446789999999


Q ss_pred             CCCCCCCCCCCCCChhhhHHHHHhhcCCCCCC------------------------CCCC------------CCCCccCC
Q 015577          203 LLNPERYTGYTGPSARRIWDAVYTENCPKWMA------------------------IVPA------------NPQTRPNP  246 (404)
Q Consensus       203 l~NPERyTGY~G~~A~rIW~aIY~ENCF~~~~------------------------~~~C------------LHsSIsiH  246 (404)
                      ++||||||||+|++|+|||++||+||||++.+                        +++|            ||||||||
T Consensus       179 l~NPEryTGY~G~~A~rIW~aIY~ENCF~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ClEkrvFyRLISGLHaSIs~H  258 (465)
T 3ahq_A          179 LLNPERYTGYKGPDAWKIWNVIYEENCFKPQTIKRPLNPLASGQGTSEENTFYSWLEGLCVEKRAFYRLISGLHASINVH  258 (465)
T ss_dssp             GGSCCCCCCCCHHHHHHHHHHHHTTCCBCC---------------------------CCCBCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCcCcccCCCCCcHHHHHHHHHHHhccCccccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998642                        4788            99999999


Q ss_pred             CCCC----C---CCCCCCChHHHHHHH------hhhcchhhhHHHHHHHHHHHHHHhhhhhhhhcc--CCCCccccHHHH
Q 015577          247 PAKT----R---PLRWGKNPELMYDRV------LRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEY--DTGNHEDDLKTV  311 (404)
Q Consensus       247 l~~~----~---~~~wgpNl~~F~~Rv------~~~PeRl~NLYF~Y~~vLRAl~Ka~p~L~~~~f--~tGn~~eD~~t~  311 (404)
                      ||++    .   ++.||||+++|++||      |+|||||+||||+|++|||||+||+|||.++.|  +|||..+|.+|+
T Consensus       259 l~~~Yl~~~~~~~~~W~pNl~~F~~R~~~~~t~G~~PeRl~NLYF~Y~lvLRAl~K~~p~l~~~~y~~~tGn~~eD~~tk  338 (465)
T 3ahq_A          259 LSARYLLQETWLEKKWGHNITEFQQRFDGILTEGEGPRRLKNLYFLYLIELRALSKVLPFFERPDFQLFTGNKIQDEENK  338 (465)
T ss_dssp             HHHTEEEEECSSCEEEECCHHHHHHHHCHHHHTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHSTTCCCCCSCSSHHHHHH
T ss_pred             HHHHHhccccccCCCcCCCHHHHHHHhccccccCCChHHHHhHHHHHHHHHHHHHHhhhhhhhccccccCCChhhhHHHH
Confidence            9998    3   899999999999997      579999999999999999999999999997666  999999999999


Q ss_pred             HHHHHHhcCccccccCCCCcccccccCCC--CcchHHHHHHHHHhhhhhhhcCccCCccccchhhhhHHHHHHHHHhcCc
Q 015577          312 SLMKQLLYNPKLQAACPLPFDEAKLWQGQ--SGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSV  389 (404)
Q Consensus       312 ~ll~~Ll~~~~l~~sc~~~FDE~~lF~~~--~~~~LK~efr~~FrNISrIMDCVgCeKCRLWGKLQt~GLgTALKILFs~  389 (404)
                      ++|.+||+..   .+||.+|||+.||++.  .+.+||+|||+|||||||||||||||||||||||||+||||||||||+.
T Consensus       339 ~~l~~ll~~~---~s~p~~FDE~~lF~~~~~~~~~LKeeFr~~FrNISrIMDCVgCdKCRLWGKLQt~GlgTALKILF~~  415 (465)
T 3ahq_A          339 MLLLEILHEI---KSFPLHFDENSFFAGDKKEAHKLKEDFRLHFRNISRIMDCVGCFKCRLWGKLQTQGLGTALKILFSE  415 (465)
T ss_dssp             HHHHHHHHHH---HHSCEEECTTCTTSCCTHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHH---HhCCCccChHhhcCCcchhHHHHHHHHHHHHHhHhHHhcCCccchhhhhhHHHHHHHHHHHHHHhcc
Confidence            9999999863   4799999999999984  6789999999999999999999999999999999999999999999997


Q ss_pred             CcC
Q 015577          390 EGQ  392 (404)
Q Consensus       390 ~~~  392 (404)
                      ++.
T Consensus       416 ~~~  418 (465)
T 3ahq_A          416 KLI  418 (465)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            764
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond, electron transport, endopl reticulum, FAD, flavoprotein, glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae} SCOP: a.227.1.1 PDB: 1rp4_A* 1rq1_A* 3nvj_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 404
d1rp4a_374 a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p 1e-115
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 374 Back     information, alignment and structure

class: All alpha proteins
fold: ERO1-like
superfamily: ERO1-like
family: ERO1-like
domain: Endoplasmic oxidoreductin 1, Ero1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  339 bits (872), Expect = e-115
 Identities = 87/351 (24%), Positives = 154/351 (43%), Gaps = 42/351 (11%)

Query: 81  YETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFW-PDDGMCRLRDCSVCECP-EN 138
           +  ++++N E +   L  L+ + FF+YF+  L+  C FW  +DG+C  R CSV      +
Sbjct: 3   FNELNAIN-ENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWD 61

Query: 139 EFPEPFKKP-FHILPSDDLMCQEGKPEATVDRTLDKRAFRGWIETDNP--WTNDDETDNG 195
             PE ++        +D +   +   +         +  +  ++ ++   + + ++ +  
Sbjct: 62  TLPEYWQPEILGSFNNDTMKEADDSDDECKFLDQLCQTSKKPVDIEDTINYCDVNDFNGK 121

Query: 196 EMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMAIVPANPQTRPNPPAKTRPL-- 253
               ++L  NPER+TGY G  A +IW  +Y +NC                  A  R +  
Sbjct: 122 NAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFT-----IGETGESLAKDAFYRLVSG 176

Query: 254 -------------------RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYL 294
                              +W  N +L   R+  + DRV N+YF +  V +A+ K   YL
Sbjct: 177 FHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYL 236

Query: 295 EQAEY-DTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQF 353
            +  + D  N E   K  +++ QL             F+E  ++       LK + + +F
Sbjct: 237 PEFSFCDLVNKEIKNKMDNVISQL---------DTKIFNEDLVFANDLSLTLKDEFRSRF 287

Query: 354 RNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVEGQNHAAQSVSCFTL 404
           +N++ +MDCV C++CRLWGK+Q  G  TALKILF +   +   +      L
Sbjct: 288 KNVTKIMDCVQCDRCRLWGKIQTTGYATALKILFEINDADEFTKQHIVGKL 338

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
d1rp4a_374 Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast 100.0
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: ERO1-like
superfamily: ERO1-like
family: ERO1-like
domain: Endoplasmic oxidoreductin 1, Ero1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-108  Score=821.00  Aligned_cols=304  Identities=26%  Similarity=0.569  Sum_probs=255.8

Q ss_pred             chhhhhhhhhchhhHHhHHhhcCCCceEEeccCCCCCCCCC-CCCCCCCCCcccccCCC-CCCCCCCCCCC-CCCCCCcc
Q 015577           80 DYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLWCDCPFWP-DDGMCRLRDCSVCECPE-NEFPEPFKKPF-HILPSDDL  156 (404)
Q Consensus        80 ~~etId~~N~~~i~P~L~~L~~t~fFRyfKVNL~~~CPFW~-dd~~C~~~~C~V~~c~e-~eiP~~wr~~~-~~~~~~~~  156 (404)
                      +|+|||++|++ |+|+|++|+++||||||||||+++||||. ++++|++++|+|++|++ ++||+.||++. +++..+..
T Consensus         2 s~~~vd~~N~~-i~p~L~~L~~~dyFRyfkVnL~~~CPFW~~d~~~C~~~~C~V~~c~dee~iP~~~~~~~~~~~~~~~~   80 (374)
T d1rp4a_           2 SFNELNAINEN-IRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWDTLPEYWQPEILGSFNNDTM   80 (374)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHTSTTTSEEEEESSCCCSSSCSSSSCCCTTTTBCCCSSCGGGSCGGGSHHHHTCCCTTTC
T ss_pred             CHHHHHHHHHH-HHHHHHHhcCCCceeeeecCCCCCCCCCCccccCcCCCCCCCccCCccccCccccccccccccccchh
Confidence            79999999995 89999999999999999999999999995 68999999999999975 67999999754 33332211


Q ss_pred             ccccC-CC-CcccccccchhhhcCccccCC--CCCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCC
Q 015577          157 MCQEG-KP-EATVDRTLDKRAFRGWIETDN--PWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKW  232 (404)
Q Consensus       157 ~c~~~-~~-~~~vd~~l~~~~~~~w~~~d~--~~~~~De~~~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~  232 (404)
                      ..... .. ....|..  ......|...++  .||..||+++++++||||++||||||||+|++|+|||++||+||||++
T Consensus        81 ~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~dfC~~dD~~~~~~~YVdLl~NPERyTGY~G~~a~~IW~~IY~ENCF~~  158 (374)
T d1rp4a_          81 KEADDSDDECKFLDQL--CQTSKKPVDIEDTINYCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTI  158 (374)
T ss_dssp             EECCTTCGGGSBHHHH--SSTTTSSCCSSSCCCHHHHTTCCCTTEEEEETTTSCCCCCCBCHHHHHHHHHHHHHTCCCCT
T ss_pred             hhccccccchhhcchh--hhhhccccccccccccccccccCCCCceEeehhhCcccccCCCCCcHHHHHHHHHHHhCCCC
Confidence            11100 00 0111111  012233443333  256655557789999999999999999999999999999999999998


Q ss_pred             CCCCCC------------CCCCccCCCCCC----CCCCCCCChHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhhhhhhh
Q 015577          233 MAIVPA------------NPQTRPNPPAKT----RPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQ  296 (404)
Q Consensus       233 ~~~~~C------------LHsSIsiHl~~~----~~~~wgpNl~~F~~Rv~~~PeRl~NLYF~Y~~vLRAl~Ka~p~L~~  296 (404)
                      ...++|            ||||||||||++    .++.||||+++|++|||+||+||+||||+|++|||||+||+|||.+
T Consensus       159 ~~~~~c~ekrvfyrlISGlHsSIs~Hl~~~yl~~~~~~w~pN~~~f~~R~g~~p~rl~NLYF~y~~~LrAl~k~~~~l~~  238 (374)
T d1rp4a_         159 GETGESLAKDAFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYLPE  238 (374)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHHHHHHHHHSEEETTTTEEECCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHGGGCCC
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCccCCCHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888            999999999998    6899999999999999999999999999999999999999999999


Q ss_pred             hccCCCCccccHHHHHHHHHHhcCccccccCCCCcccccccCCCCcchHHHHHHHHHhhhhhhhcCccCCccccchhhhh
Q 015577          297 AEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQV  376 (404)
Q Consensus       297 ~~f~tGn~~eD~~t~~ll~~Ll~~~~l~~sc~~~FDE~~lF~~~~~~~LK~efr~~FrNISrIMDCVgCeKCRLWGKLQt  376 (404)
                      ++|+++.   |.+++..+++|++.     .+|.+|||+.||+++.+..||+|||.||||||||||||||+||||||||||
T Consensus       239 ~~~~~~~---~~~~~~~~~~l~~~-----~~~~~fde~~~f~~~~~~~lk~efr~~frnisriMDCV~CeKCrLwGKlQt  310 (374)
T d1rp4a_         239 FSFCDLV---NKEIKNKMDNVISQ-----LDTKIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQCDRCRLWGKIQT  310 (374)
T ss_dssp             CSTTSST---TTTHHHHHHHHHHT-----TCCGGGGSCTTCTTTSCHHHHHHHHHHHHHHHHGGGGCCSHHHHHHHHHHH
T ss_pred             cCCCCCC---CHHHHHHHHHHHHH-----hccccCCHHHhcCCcchHHHHHHHHHHHHHHHHHHcccCccHhHhhHHHHH
Confidence            9998764   45566667777754     367899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcCcCCC
Q 015577          377 LGLGTALKILFSVEGQNH  394 (404)
Q Consensus       377 ~GLgTALKILFs~~~~~~  394 (404)
                      +||||||||||+.++.+.
T Consensus       311 ~GlgtALKILf~~~~~~~  328 (374)
T d1rp4a_         311 TGYATALKILFEINDADE  328 (374)
T ss_dssp             HHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHHHHHHhccccccc
Confidence            999999999999887544