Citrus Sinensis ID: 015583

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
Protein Sequence
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEcccEEEEEEcccccccHHHHEEEEccccccccccccEcccccEEEcccccccEccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHccHHHccHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msacsstfrlpnlpnispqnhnivmPTTVFLSLrhstatnpalcklqcvgnnfdstpktieipgkiteesadceprihssggdggagdspggggggggdsgggggdgegndgeekefgpilKFEEVMKEIELkgvglpddMMEAAKTVGIRKMFLLRYLDLqgsvwplgFLMRYCFMLRdrmladpsflfkvGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGmlapyarigqpsassglfGRIQnacgslpssvfeaerpgcrfsvKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNikkseddipvpplvkSAALWGVFLAVSSNIRYQIVNGLErivessplakqlppvaMAFTVGVRFAnniyggmqfVDWAKWSGVQ
Flexible Loop (DISEMBL)
msacsstfrlpnlpnispqnhNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELkgvglpddmMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Low Complexity Region (SEG)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHssggdggagdspggggggggdsgggggdgegndgEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Disordered region (IsUnstruct)
********************HNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDS***************************************************************PILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWS***
Disordered Region (DISOPRED)
******T**LPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTP**************************************************************ILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPY***************IQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTA**************PLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Disordered Region (DISEMBL)
********RLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Disordered Region (DISPRO)
******TFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSS**DGGA****************************KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
225440504	443	PREDICTED: uncharacterized protein LOC10	0.722	0.659	0.828	1e-144
356566573	443	PREDICTED: uncharacterized protein LOC10	0.722	0.659	0.797	1e-141
359479472	409	PREDICTED: uncharacterized protein LOC10	0.720	0.711	0.835	1e-141
356523205	443	PREDICTED: uncharacterized protein LOC10	0.722	0.659	0.804	1e-141
255573012	419	conserved hypothetical protein [Ricinus	0.717	0.692	0.757	1e-140
15242979	433	protein reticulata-related 1 [Arabidopsi	0.732	0.683	0.797	1e-139
297812405	434	hypothetical protein ARALYDRAFT_326573 [	0.732	0.682	0.797	1e-139
224103009	278	predicted protein [Populus trichocarpa]	0.688	1.0	0.845	1e-137
449440303	439	PREDICTED: uncharacterized protein LOC10	0.722	0.665	0.770	1e-135
224138886	284	predicted protein [Populus trichocarpa]	0.702	1.0	0.816	1e-135

>gi|225440504|ref|XP_002272506.1| PREDICTED: uncharacterized protein LOC100264910 [Vitis vinifera]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/292 (82%), Positives = 269/292 (92%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPIL FEEVM+E + +G  LP DM+ AAK+VGIRK+ LLRYLDLQGSVWPLGF M
Sbjct: 152 EEEEFGPILSFEEVMREAQARGASLPSDMLTAAKSVGIRKILLLRYLDLQGSVWPLGFAM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           + C MLR+RMLADPSFLFK+GTEIVIDSCCAT AE QKRGKDFW+EFELY ADLLVG+VV
Sbjct: 212 KSCSMLRNRMLADPSFLFKIGTEIVIDSCCATFAEVQKRGKDFWAEFELYTADLLVGVVV 271

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           +IALVGMLAPYARIGQPS S G  G +Q+A G+LPSSVFEAERPGCRFSVKQRIATYF+K
Sbjct: 272 NIALVGMLAPYARIGQPSISKGFLGHLQHAYGALPSSVFEAERPGCRFSVKQRIATYFFK 331

Query: 293 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRY 352
           G+LYGSVG  CG+IGQGIANLIMTAKR+IKKSE+DIPVPPLVKSAALWGVFLAVSSN RY
Sbjct: 332 GILYGSVGFACGLIGQGIANLIMTAKRSIKKSEEDIPVPPLVKSAALWGVFLAVSSNTRY 391

Query: 353 QIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
           QI+NGLER+VE+SPLAK++PPVAMAFTVGVRFANNIYGGMQFVDWA+WSGVQ
Sbjct: 392 QIINGLERVVEASPLAKKVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566573|ref|XP_003551505.1| PREDICTED: uncharacterized protein LOC100783806 [Glycine max]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 233/292 (79%), Positives = 270/292 (92%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           + C MLR+RMLADP+FLFK+G+EIVID+CCAT AE QKRGKDFW+EFELYLADLLVGLVV
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDFWAEFELYLADLLVGLVV 271

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           ++ALVGMLAPYAR+G+PS SSG  GR+Q A  +LPSSVFEAERPGCRFSV+QR+ TYFYK
Sbjct: 272 NVALVGMLAPYARLGKPSISSGFLGRMQKAYAALPSSVFEAERPGCRFSVQQRLGTYFYK 331

Query: 293 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRY 352
           G++YG+VG  CGIIGQGIAN+IMTAKR+IKKSE+DIPVPPLVKSAALWGVFLAVSSN RY
Sbjct: 332 GIMYGAVGFACGIIGQGIANMIMTAKRSIKKSEEDIPVPPLVKSAALWGVFLAVSSNTRY 391

Query: 353 QIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
           Q+VNGLER+VE+SP+AKQ+PPVA+AFTVGVRFANN+YGGMQFVDWA+WSGVQ
Sbjct: 392 QVVNGLERLVEASPMAKQVPPVALAFTVGVRFANNVYGGMQFVDWARWSGVQ 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479472|ref|XP_003632277.1| PREDICTED: uncharacterized protein LOC100854755 [Vitis vinifera]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/291 (83%), Positives = 264/291 (90%)

Query: 114 EKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMR 173
           E+EFG ILKFEEVM+E E +G  LP DM EAAKT GIR++ L RYLDLQGSVWPLGF M+
Sbjct: 119 EEEFGRILKFEEVMREAENRGASLPSDMWEAAKTTGIREVILFRYLDLQGSVWPLGFGMK 178

Query: 174 YCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVD 233
           +  MLR+RMLADPSFLFKVGTE+VIDSCCAT AE QKRGKDFW+EFELY ADLLVG+VVD
Sbjct: 179 HFSMLRNRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGKDFWAEFELYAADLLVGVVVD 238

Query: 234 IALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKG 293
           IALVGMLAPY R GQPS S GL GRIQ+AC +LPSSVFEAERPGCRFSVKQRIATYFYKG
Sbjct: 239 IALVGMLAPYTRFGQPSISRGLVGRIQHACAALPSSVFEAERPGCRFSVKQRIATYFYKG 298

Query: 294 VLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQ 353
           VLYGSVG  CG+IGQGIAN IMTAKR+IKKSEDDIPVPPL+KSAALWGVFLAVSSN RYQ
Sbjct: 299 VLYGSVGFGCGLIGQGIANAIMTAKRSIKKSEDDIPVPPLLKSAALWGVFLAVSSNTRYQ 358

Query: 354 IVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
           I+NGLE +VE+SPLAK++PPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ
Sbjct: 359 IINGLECVVEASPLAKKVPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523205|ref|XP_003530232.1| PREDICTED: uncharacterized protein LOC100780872 [Glycine max]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/292 (80%), Positives = 269/292 (92%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           + C MLR+RMLADP+FLFK+G+EIVID+CCAT AE QKRGKDFW+EFELYLADLLVGLVV
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDFWAEFELYLADLLVGLVV 271

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           ++ALVGMLAPYARIG+PS SSG  GR+Q A  +LPSSVFEAERPGCRFSV+QR+ TYFYK
Sbjct: 272 NVALVGMLAPYARIGKPSISSGFLGRMQKAYAALPSSVFEAERPGCRFSVQQRLGTYFYK 331

Query: 293 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRY 352
           G++YG+VG  CGIIGQGIANLIMTAKR+IK SE+DIPVPPLVKSAALWGVFLA+SSN RY
Sbjct: 332 GIMYGAVGFGCGIIGQGIANLIMTAKRSIKTSEEDIPVPPLVKSAALWGVFLAISSNTRY 391

Query: 353 QIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
           QIVNGLER+VE+SPLAKQ+PPVA+AFTVGVRFANN+YGGMQFVDWA+WSGVQ
Sbjct: 392 QIVNGLERLVEASPLAKQVPPVALAFTVGVRFANNVYGGMQFVDWARWSGVQ 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573012|ref|XP_002527436.1| conserved hypothetical protein [Ricinus communis] gi|223533171|gb|EEF34928.1| conserved hypothetical protein [Ricinus communis]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/318 (75%), Positives = 267/318 (83%), Gaps = 28/318 (8%)

Query: 115 KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY 174
           KEFGPI+++E+++KE E +GV LP DM+EAAKT GIR++F+LRYLDLQGSVWPLGFLM+Y
Sbjct: 102 KEFGPIMRYEQIIKEAETRGVQLPHDMIEAAKTTGIRQLFVLRYLDLQGSVWPLGFLMKY 161

Query: 175 CFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDI 234
           C MLR+RMLADPSFLFKVGTEIVIDSCCAT AE  KRGKDFWSEFELY ADLLVG+VVDI
Sbjct: 162 CTMLRNRMLADPSFLFKVGTEIVIDSCCATFAEVHKRGKDFWSEFELYAADLLVGIVVDI 221

Query: 235 ALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGV 294
           ALV MLAPYARIG PS  SGL G +Q AC +LPSSVFEAERPGC+FSVKQRIATYFYKGV
Sbjct: 222 ALVAMLAPYARIGWPSVKSGLLGNLQQACAALPSSVFEAERPGCKFSVKQRIATYFYKGV 281

Query: 295 LYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALW-------------- 340
           LYGSVG  CG+IGQGIANLIMTAKR+IKKSE+DIPVPPLV+SAALW              
Sbjct: 282 LYGSVGFGCGLIGQGIANLIMTAKRSIKKSEEDIPVPPLVQSAALWEWSLNHMMNSYSSN 341

Query: 341 --------------GVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFAN 386
                         GVFLAVSSN RYQI+NGLER+VE SP AKQ+PPVAMAFT+GVRFAN
Sbjct: 342 PILRLSAHSSPRWSGVFLAVSSNTRYQIINGLERVVEGSPWAKQVPPVAMAFTIGVRFAN 401

Query: 387 NIYGGMQFVDWAKWSGVQ 404
           N+YGGMQFVDWAKWSGVQ
Sbjct: 402 NVYGGMQFVDWAKWSGVQ 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242979|ref|NP_197671.1| protein reticulata-related 1 [Arabidopsis thaliana] gi|13605899|gb|AAK32935.1|AF367348_1 AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|9758754|dbj|BAB09278.1| unnamed protein product [Arabidopsis thaliana] gi|19548025|gb|AAL87376.1| AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|332005693|gb|AED93076.1| protein reticulata-related 1 [Arabidopsis thaliana]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/297 (79%), Positives = 269/297 (90%), Gaps = 1/297 (0%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPL
Sbjct: 137 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPL 196

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLV 228
           GFLMR C MLR+RMLADPSFLFKVGTE+ IDSCCAT AE QKRG+DFWSEFELY ADLLV
Sbjct: 197 GFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLV 256

Query: 229 GLVVDIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIA 287
           GLVVD+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPSSVFEAERPGC+FSV QRIA
Sbjct: 257 GLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIA 316

Query: 288 TYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVS 347
           T+FYKG+LYGSVG  CG+IGQGIANLIMTAKR++KKSE+D+P+PPL +SAALWGVFL +S
Sbjct: 317 TFFYKGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLS 376

Query: 348 SNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
           SN RYQI+NGLER+VE S  AK++P VAMAFTVGVRFANN+YGGMQFVDWAK SGVQ
Sbjct: 377 SNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812405|ref|XP_002874086.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata] gi|297319923|gb|EFH50345.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/297 (79%), Positives = 269/297 (90%), Gaps = 1/297 (0%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VG+RK+FLLRYLDLQGSVWPL
Sbjct: 138 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGLRKLFLLRYLDLQGSVWPL 197

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLV 228
           GFLMR C MLR+RMLADPSFLFKVGTEI IDSCCAT AE QKRG+DFWSEFELY ADLLV
Sbjct: 198 GFLMRSCAMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLV 257

Query: 229 GLVVDIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIA 287
           GLVVD+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPSSVFEAERPGC+FSV QRIA
Sbjct: 258 GLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIA 317

Query: 288 TYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVS 347
           T+FYKG+LYGSVG  CG+IGQGIANLIMTAKR++KKSE+D+P+PPL +SAALWGVFL +S
Sbjct: 318 TFFYKGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGIS 377

Query: 348 SNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
           SN RYQI+NGLER+VE S  AK++P VAMAFTVGVRFANN+YGGMQFVDWAK SGVQ
Sbjct: 378 SNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 434

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103009|ref|XP_002312888.1| predicted protein [Populus trichocarpa] gi|222849296|gb|EEE86843.1| predicted protein [Populus trichocarpa]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/278 (84%), Positives = 257/278 (92%)

Query: 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADP 186
           MKEIE +GV LP DMMEAAK++GIRKMFLLRYLDLQGS WPLGFLM+YC MLR+RMLADP
Sbjct: 1   MKEIEARGVELPADMMEAAKSIGIRKMFLLRYLDLQGSAWPLGFLMKYCTMLRNRMLADP 60

Query: 187 SFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARI 246
           SFLFKVGTEIVIDSCCAT AE QKRGKDFWSEFELY ADLLVG+VVD ALVG+LAPYARI
Sbjct: 61  SFLFKVGTEIVIDSCCATFAEVQKRGKDFWSEFELYAADLLVGIVVDFALVGLLAPYARI 120

Query: 247 GQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGII 306
           G+P+ S GLFG IQ AC +LPSSVFEAERPGC+FSVKQR ATYFYKGVLYGSVG  CG+I
Sbjct: 121 GKPAVSGGLFGSIQQACAALPSSVFEAERPGCKFSVKQRTATYFYKGVLYGSVGFGCGLI 180

Query: 307 GQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSP 366
           GQGIANLIMTAKR+IKKS++DIPVPPLV+SA LWGVFLA+SSN RYQI+NGLE +VE+SP
Sbjct: 181 GQGIANLIMTAKRSIKKSDEDIPVPPLVQSAVLWGVFLALSSNTRYQIINGLEHLVEASP 240

Query: 367 LAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
           +AKQ+PPVAMAFTVGVRFANNIYGGMQFVDWAK SGVQ
Sbjct: 241 VAKQVPPVAMAFTVGVRFANNIYGGMQFVDWAKLSGVQ 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440303|ref|XP_004137924.1| PREDICTED: uncharacterized protein LOC101202748 [Cucumis sativus] gi|449483677|ref|XP_004156657.1| PREDICTED: uncharacterized protein LOC101226426 [Cucumis sativus]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/292 (77%), Positives = 261/292 (89%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPI+KFEEVMKE+E +GV LP DM+EAAK+ GIRK+ LLRYL++QG  WPLGFLM
Sbjct: 148 EEEEFGPIMKFEEVMKELESRGVTLPSDMLEAAKSEGIRKLLLLRYLEMQGLGWPLGFLM 207

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           R C M+R+R+LADPSF FKVG E+VIDSCCAT AE QKRGKDFW+EFELYLAD+LVG+ V
Sbjct: 208 RSCAMIRNRVLADPSFFFKVGVELVIDSCCATFAEVQKRGKDFWTEFELYLADILVGVAV 267

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           + ALV +LAPYAR GQPS S G  GRIQ+AC +LPSSVFEAERPGCRFSV+QRIAT+FYK
Sbjct: 268 NFALVALLAPYARFGQPSVSKGFLGRIQHACEALPSSVFEAERPGCRFSVQQRIATFFYK 327

Query: 293 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRY 352
           G++YG VG  CGIIGQGIANLIMTAKR+IKKSE+++PVPPL KSAALWGVFLA+SSN RY
Sbjct: 328 GLVYGVVGFGCGIIGQGIANLIMTAKRSIKKSENEVPVPPLFKSAALWGVFLALSSNTRY 387

Query: 353 QIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
           QI+NGLER+VESSPLAK +P VAMAFTVG+RF NN+Y GMQF+DWA+WSGVQ
Sbjct: 388 QIINGLERVVESSPLAKNIPAVAMAFTVGIRFGNNVYAGMQFIDWARWSGVQ 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138886|ref|XP_002322926.1| predicted protein [Populus trichocarpa] gi|222867556|gb|EEF04687.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/284 (81%), Positives = 259/284 (91%)

Query: 121 LKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRD 180
           +KFEEVMKE E +G  LP DM+EAAKT+GIRK+ LLRYLDLQG+   LGF ++ C MLR+
Sbjct: 1   MKFEEVMKETEARGASLPPDMLEAAKTIGIRKVLLLRYLDLQGAGGLLGFAIKSCAMLRN 60

Query: 181 RMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGML 240
           RMLADPSFLFK+GTEIVIDSCCAT AE QKRGKDFW+EFELY+ADLLVG+VV+IALVGML
Sbjct: 61  RMLADPSFLFKIGTEIVIDSCCATFAEVQKRGKDFWAEFELYVADLLVGVVVNIALVGML 120

Query: 241 APYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVG 300
           APY RIGQPS S G  GR+Q+A G+LPSSVFEAERPGCRFSV+QRI TYFYKGVLYGSVG
Sbjct: 121 APYVRIGQPSLSKGFLGRLQHAYGALPSSVFEAERPGCRFSVQQRIGTYFYKGVLYGSVG 180

Query: 301 LVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLER 360
             CGIIGQGIANLIMTAKR+IKKSE+DIPVPPL+KSAALWGVFLAVSSN RYQ++NGLER
Sbjct: 181 FACGIIGQGIANLIMTAKRSIKKSEEDIPVPPLLKSAALWGVFLAVSSNTRYQVINGLER 240

Query: 361 IVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
           +VE SP+AKQ+PPVAMAFTVGVRFANNIYGGMQFVDWA+WSGVQ
Sbjct: 241 LVEGSPMAKQVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
TAIR|locus:2158155	433	RER1 "AT5G22790" [Arabidopsis	0.722	0.674	0.808	2.2e-128
TAIR|locus:2065649	432	LCD1 "AT2G37860" [Arabidopsis	0.722	0.675	0.773	2.5e-120
TAIR|locus:505006615	386	AT5G12470 "AT5G12470" [Arabido	0.675	0.707	0.294	2.3e-30
TAIR|locus:2077838	337	AT3G08640 "AT3G08640" [Arabido	0.556	0.667	0.360	1e-27
TAIR|locus:2077828	339	AT3G08630 "AT3G08630" [Arabido	0.559	0.666	0.337	3.2e-26
TAIR|locus:2078446	745	AT3G56140 "AT3G56140" [Arabido	0.655	0.355	0.287	1.7e-23
TAIR|locus:2063136	735	AT2G40400 [Arabidopsis thalian	0.655	0.360	0.276	5.8e-23
TAIR|locus:2176826	521	AT5G24690 "AT5G24690" [Arabido	0.480	0.372	0.310	3.8e-15

TAIR|locus:2158155 RER1 "AT5G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
 Identities = 237/293 (80%), Positives = 268/293 (91%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPLGFLM
Sbjct:   141 EEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLM 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
             R C MLR+RMLADPSFLFKVGTE+ IDSCCAT AE QKRG+DFWSEFELY ADLLVGLVV
Sbjct:   201 RSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVV 260

Query:   233 DIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFY 291
             D+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPSSVFEAERPGC+FSV QRIAT+FY
Sbjct:   261 DVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFY 320

Query:   292 KGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIR 351
             KG+LYGSVG  CG+IGQGIANLIMTAKR++KKSE+D+P+PPL +SAALWGVFL +SSN R
Sbjct:   321 KGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNAR 380

Query:   352 YQIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
             YQI+NGLER+VE S  AK++P VAMAFTVGVRFANN+YGGMQFVDWAK SGVQ
Sbjct:   381 YQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 433

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2065649 LCD1 "AT2G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
 Identities = 226/292 (77%), Positives = 253/292 (86%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G  LP DM+EAAK  GIRK+ LLRYLDLQ S   LGF +
Sbjct:   141 EEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAI 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
             R   MLR+RMLADPSFLFK+G EIVIDSCCAT+AE QKRGKDFW+EFELY+ADLLVG VV
Sbjct:   201 RSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVV 260

Query:   233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
             +IALVGMLAPY R GQPSAS G  GR+  A  +LPSSVFEAERPGCRFS +QR+ATYFYK
Sbjct:   261 NIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYK 320

Query:   293 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRY 352
             G++YG+VG  CGI+GQGIANLIMTAKRNI KSE++IPVPPL+KSAALWGVFL+VSSN RY
Sbjct:   321 GIMYGAVGFGCGIVGQGIANLIMTAKRNINKSEENIPVPPLIKSAALWGVFLSVSSNTRY 380

Query:   353 QIVNGLERIVESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
             QI+NGLER+VE+SP AK+ PP AMAFTVGVR ANNIYGGMQFVDWA+ SG Q
Sbjct:   381 QIINGLERVVEASPFAKKFPPAAMAFTVGVRLANNIYGGMQFVDWARLSGCQ 432

GO:0003674 "molecular_function" evidence=ND

GO:0048366 "leaf development" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:505006615 AT5G12470 "AT5G12470" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 83/282 (29%), Positives = 150/282 (53%)

Query:   126 VMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLAD 185
             ++KE  ++   LP D+  A +   I    + R+L+LQ S   + +LM++    R+R+LAD
Sbjct:   108 LLKESGIELESLPKDLAAAIEAGRIPGSVITRFLELQKSA-VMRWLMQFGGF-RERLLAD 165

Query:   186 PSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYAR 245
               F+ K+  E  +     T AE+++R ++F++E E+  AD+ + ++ D  LV + AP   
Sbjct:   166 DLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVS 225

Query:   246 IGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGI 305
             +  P A +   G I     + P + F+    G  +++ QR+      G    +VG    +
Sbjct:   226 LRPPLALTA--GGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSL 283

Query:   306 IGQGIANLIMTAKRNI-KKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGL--ERIV 362
             +G  I N  + A++ + + SE ++   P+V ++  +GV++AVSSN+RYQIV G+  +R++
Sbjct:   284 VGTAITNAFIKARKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLL 343

Query:   363 ESSPLAKQLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
             E  P+  Q      A    VR  N   G + +VD+A+  G+Q
Sbjct:   344 E--PMLHQHKLALSALCFAVRTGNTFLGSLLWVDYARLIGIQ 383

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2077838 AT3G08640 "AT3G08640" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 89/247 (36%), Positives = 129/247 (52%)

Query:   162 QGSVW-PLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFE 220
             + S W P+G  ++     R R+ ADP F FKV  E ++      L +   R     +E +
Sbjct:    94 ESSPWGPIGLFIQGW---RSRVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELD 150

Query:   221 LYLADLLVGLVVDIALVGMLAPYAR-IGQPSASSGLFGRIQNACGSLPSSVFEAERPGCR 279
                + L+VG +++  L+ MLAP A  +G      G+F   +N C S  S +FE    G  
Sbjct:   151 FVFSTLVVGSILNFVLMYMLAPTAATLGSSQTLPGIF---RN-CPS--SHMFEQ---GS- 200

Query:   280 FSVKQRIATYFYKGVLYGSVGLVCGIIGQGIAN-LIMTAKRNIKKSEDDIPVPPLVKSAA 338
             F+V  R  T  YKG+++ SVGL  G++G  I+N LIM  K+     E     PP V ++ 
Sbjct:   201 FTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKPPPTVLNSL 260

Query:   339 LWGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTVGV-RFANNIYGGMQFVDW 397
              W   + VS+N RYQ +NG+E +     LAK LPP+    +V V R ANN+ GGM FV  
Sbjct:   261 TWATHMGVSANARYQTLNGIEFL-----LAKVLPPLVFKTSVIVLRCANNVAGGMSFVLL 315

Query:   398 AKWSGVQ 404
             A+ +G Q
Sbjct:   316 ARMTGSQ 322

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2077828 AT3G08630 "AT3G08630" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 83/246 (33%), Positives = 127/246 (51%)

Query:   162 QGSVW-PLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFE 220
             + S W PLG  ++     R R+ AD  F FKV  E+++      L +   R     +E +
Sbjct:    91 ESSPWGPLGLFIQGW---RSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELD 147

Query:   221 LYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRF 280
                + L+VG +++  L+ +LAP A I     SS L   I  +C S  S +FE    G  F
Sbjct:   148 FVFSTLVVGSILNFTLMYLLAPSA-ISH--GSSNLLPGIFRSCPS--SHMFEQ---G-NF 198

Query:   281 SVKQRIATYFYKGVLYGSVGLVCGIIGQGIAN-LIMTAKRNIKKSEDDIPVPPLVKSAAL 339
             ++  R  T  YKG+++ +VGL  G++G  I+N LIM  K+     E     PP + ++  
Sbjct:   199 TLMNRFGTLVYKGMVFATVGLAAGLVGTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLT 258

Query:   340 WGVFLAVSSNIRYQIVNGLERIVESSPLAKQLPPVAMAFTV-GVRFANNIYGGMQFVDWA 398
             W   + VS+N+RYQ +NG E ++E     K LPP+    +V  +R  NN+ GGM FV  A
Sbjct:   259 WATHMGVSANVRYQTLNGAEFLLE-----KSLPPLVFKTSVIALRVVNNVLGGMSFVTLA 313

Query:   399 KWSGVQ 404
             + +G Q
Sbjct:   314 RMTGSQ 319

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2078446 AT3G56140 "AT3G56140" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 79/275 (28%), Positives = 133/275 (48%)

Query:   137 LPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFM-LRDRMLADPSFLFKVGTE 195
             LP D+        +    L    DL+   +PL   +   F   R+R+LADP FL ++  E
Sbjct:   437 LPPDIQNGLDLGLVSPEVLQNLFDLEQ--YPLISELTQRFQGFRERLLADPKFLNRLAIE 494

Query:   196 IVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAP---YARIGQPSAS 252
               I      +A+++KR ++F+ E +  + D + G VVD   V + AP   +      +  
Sbjct:   495 EAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADETTG 554

Query:   253 SGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIAN 312
                   ++   GS+P + F+    G  +++  RIA+    G+    VG+V      G +N
Sbjct:   555 PDSIDALRGLLGSIPDNAFQKSLAGREWNLNLRIASVIVGGLKLAGVGVVSSFAAVGASN 614

Query:   313 LIMTAKRNIKKSEDDIPVP---PLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAK 369
              +  A++ IK        P   PL+K+A ++G FL  S+N+RYQI+ GL     S  L+ 
Sbjct:   615 ALNIARKVIKPELVVAEKPKRSPLLKTAMVYGGFLGTSANLRYQIIAGLIEHRLSDELSS 674

Query:   370 QLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
             Q P +  A +  VR  N+ +G  Q++D A+ +G+Q
Sbjct:   675 Q-PLLVNAISFVVRTLNSYFGTQQWIDLARSTGLQ 708

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR|locus:2063136 AT2G40400 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.8e-23, P = 5.8e-23
 Identities = 76/275 (27%), Positives = 133/275 (48%)

Query:   137 LPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFM-LRDRMLADPSFLFKVGTE 195
             LP D+ +      +    L  + DL+   +PL   +   F   R+R+LADP FL ++  E
Sbjct:   428 LPQDIQKGLDLGLVSPEILQNFFDLEQ--YPLISELTQRFQGFRERLLADPKFLNRLAIE 485

Query:   196 IVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAP---YARIGQPSAS 252
               I      +A+++KR ++F+ E +  + D +   VVD   V + AP   +      +  
Sbjct:   486 EAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTVWLPAPTLSFISYADETIG 545

Query:   253 SGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIAN 312
                   ++   GS+P + F+    G  +++  RIA+    G+    VG+V      G +N
Sbjct:   546 PNSIDALRGLLGSIPDNAFQKSLGGQEWTLSLRIASVIIGGLKLAGVGVVSSFAAVGSSN 605

Query:   313 LIMTAKRNIKKS---EDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLERIVESSPLAK 369
              +   ++ IK      +     P++K+A ++G +L  SSNIRYQI+ GL     S  L+ 
Sbjct:   606 ALYAIRKFIKPELGVGEQAKRSPMLKTALVYGGYLGTSSNIRYQIIAGLIEHRISDELSS 665

Query:   370 QLPPVAMAFTVGVRFANNIYGGMQFVDWAKWSGVQ 404
             Q P +    +  VR AN+ +G  Q++D A+ +G+Q
Sbjct:   666 Q-PLLVNMISFVVRVANSYFGTQQWIDLARSTGLQ 699

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2176826 AT5G24690 "AT5G24690" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 3.8e-15, P = 3.8e-15
 Identities = 64/206 (31%), Positives = 103/206 (50%)

Query:   181 RMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGML 240
             RMLADP+FL+K+  E      C+   E + R      E++L L ++L     + A V +L
Sbjct:   240 RMLADPAFLYKLLLEQAATVGCSVWWEVKNRKNRLKEEWDLALINVLTVSACNAAAVWLL 299

Query:   241 APYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVG 300
             AP    G    ++  F  +QN    LP+++FE   P   F +++R  + FYK      +G
Sbjct:   300 APCRSYG----NTFRFD-LQNTLQKLPNNLFEMSYPLREFDLQKRFHSLFYKAAELSILG 354

Query:   301 LVCGIIGQGIANLIMTAKRNIKKSEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGLER 360
             L  G + QG  + ++  K   KK+   + VP +  +A  +G FL + +N+RYQ++ G ER
Sbjct:   355 LAAGTL-QGSLSNVLAGK---KKNRVSVTVPSISTNALGYGAFLGIYANLRYQLLCGFER 410

Query:   361 IVESSPLAKQLPPVAMAFTVGVRFAN 386
              V S      +  VA+ F   +R  N
Sbjct:   411 GVSSH---FDVIGVALFFGTALRIMN 433


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      404       370   0.00086  117 3  11 22  0.49    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  240 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.16u 0.17s 28.33t   Elapsed:  00:00:01
  Total cpu time:  28.17u 0.17s 28.34t   Elapsed:  00:00:01
  Start:  Sat May 11 09:25:07 2013   End:  Sat May 11 09:25:08 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021400001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (443 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	404
pfam11891	179	pfam11891, DUF3411, Domain of unknown function (DU	2e-86
PRK05325	401	PRK05325, PRK05325, hypothetical protein; Provisio	1e-05
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	2e-05
PHA00370	297	PHA00370, III, attachment protein	5e-04
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	0.001
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	0.002
COG2718	423	COG2718, COG2718, Uncharacterized conserved protei	0.004

>gnl|CDD|221294 pfam11891, DUF3411, Domain of unknown function (DUF3411)

 Score =  259 bits (665), Expect = 2e-86
 Identities = 95/181 (52%), Positives = 129/181 (71%), Gaps = 3/181 (1%)

Query: 180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGM 239
           +R+LADPSFLFK+  E VID C AT+AE +KRG++FW+EF+L  ADLLVG VV+ ALV +
Sbjct: 1   ERLLADPSFLFKLAMEEVIDICAATVAEVEKRGENFWAEFDLVAADLLVGSVVNFALVYL 60

Query: 240 LAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSV 299
           LAP    G  +A     G ++   GSLPS+VFE   PG  +S++QR  T FYKG    +V
Sbjct: 61  LAPTRSFGSTAAEM--AGGLRKFLGSLPSNVFEKGLPGRSYSLQQRFGTVFYKGAKLAAV 118

Query: 300 GLVCGIIGQGIANLIMTAKRNIKK-SEDDIPVPPLVKSAALWGVFLAVSSNIRYQIVNGL 358
           G + G++GQ I+N +M A++ + K SE+ + VPPL K+A LWG FL VS+N+RYQ++NGL
Sbjct: 119 GFIAGLVGQAISNALMAARKAVDKNSEESVKVPPLFKTALLWGAFLGVSANLRYQLLNGL 178

Query: 359 E 359
           E
Sbjct: 179 E 179

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. Length = 179

>gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 22/84 (26%)

Query: 58  KTIEIPGKITEESADCEPRI-HSSGGDGG----------AGDSPGGGGGGGGDSGGGGGD 106
           + + IP +  +E     P+  +  GG              GD  G   GGGG  G GGGD
Sbjct: 37  EVVSIPIRDIDE-----PKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGD 91

Query: 107 GEGNDGEE-----KEFGPILKFEE 125
           GEG D  E     +E   +L FE+
Sbjct: 92  GEGEDYFEFEISLEELLDLL-FED 114

Length = 401

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 2   SACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIE 61
           S   S     +L +  PQ  +         S + +T +  A      +  +  ++  +  
Sbjct: 5   STMVSAAASTSLSSSRPQLSSFSS-----RSPQSATRSPRA----SSIKCSASASASSSA 55

Query: 62  IPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGE 113
                +  +         S      G   GGGG GG   GGGGG G G    
Sbjct: 56  TSSSASLVAN--GAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWR 105

Length = 796

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 80  SGGDGGAGDSPGG-GGGGGGDSGGGGGDGEGNDGEEKEFG 118
           +GGD G G++ GG GGG  G SGGGG DG G++G      
Sbjct: 96  TGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKS 135

Length = 297

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 16/33 (48%), Positives = 16/33 (48%)

Query: 75  PRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDG 107
                  G  G G S GG  GGGG SGGGG  G
Sbjct: 237 SSGSGGSGGSGGGSSGGGFSGGGGSSGGGGASG 269

Length = 271

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 79  SSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
            SGG GG GD  G GGGGGG  GG GG+     G
Sbjct: 113 GSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGG 146

Length = 182

>gnl|CDD|225339 COG2718, COG2718, Uncharacterized conserved protein [Function unknown]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 76  RIHSSGGDGGAGD---SPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIEL 132
            +     +   GD    P GGGGGG   G   GDGEG D    EF   +  EEV+ ++  
Sbjct: 74  HVGPGNDEFAVGDRIERPQGGGGGGSGKGQAAGDGEGED----EFVFQISREEVL-DLLF 128

Query: 133 KGVGLPD 139
           + + LP+
Sbjct: 129 EDLELPN 135

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	404
PF11891	180	DUF3411: Domain of unknown function (DUF3411); Int	100.0
PRK05325	401	hypothetical protein; Provisional	91.16
TIGR02877	371	spore_yhbH sporulation protein YhbH. This protein	91.16
PLN03138	796	Protein TOC75; Provisional	91.0
PF04285	421	DUF444: Protein of unknown function (DUF444); Inte	86.22

>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=4e-74  Score=527.37  Aligned_cols=179  Identities=47%  Similarity=0.891  Sum_probs=172.1

Q ss_pred             hhhhcCchhhHHHHHHHHhhhhhhhhHHHhhcCcchhhhHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCchhhhH
Q 015583          180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRI  259 (404)
Q Consensus       180 ~RlLADP~FlfKl~iE~~I~i~~~~~aE~~~R~e~F~~ElDfV~ad~v~g~v~df~lVwLlAPt~s~g~~~~s~g~~~~l  259 (404)
                      |||||||+|||||++||+||++|+++|||++|||+||+|||||++|+++++|+||+||||||||+++++++.+.. .+.+
T Consensus         1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~-~~~~   79 (180)
T PF11891_consen    1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSP-GGGL   79 (180)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCccccccc-chHH
Confidence            799999999999999999999999999999999999999999999999999999999999999999998775332 2689


Q ss_pred             HhHhccCCCCccccCCCCCcCchhhhHHHHhhcceeeehhhhhHhhhhHHHHHHHHHHhhhcCCC-CCCCCCChhhhhhH
Q 015583          260 QNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKS-EDDIPVPPLVKSAA  338 (404)
Q Consensus       260 ~~~~~~lP~n~Fq~~~pG~~fsl~qR~~a~~~KG~~l~~VGf~aGlvG~glsN~L~~~Rr~~~~~-~~~~~~PPv~~sAl  338 (404)
                      ++++++||+||||+++||++||++||++||+|||++|++|||+||++|+++||+|+++||+++|+ |.++++|||++||+
T Consensus        80 ~~~~~~~P~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~~rk~~~~~~e~~~~~ppv~~ta~  159 (180)
T PF11891_consen   80 QKFLGSLPNNAFQKGYPGRSFSLAQRIGAFVYKGAKLAAVGFIAGLVGTGLSNALIAARKKVDPSFEPSVPVPPVLKTAL  159 (180)
T ss_pred             HHHHHhChHHHhccCCCCCcccHHHHHHHHHHcchHhhhhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999985 78999999999999


Q ss_pred             HHHHHHhhchhhHHHHHHhHH
Q 015583          339 LWGVFLAVSSNIRYQIVNGLE  359 (404)
Q Consensus       339 ~wg~fMGvSSNlRYQil~GlE  359 (404)
                      +||+|||+|||+|||+|||+|
T Consensus       160 ~~g~fmGvSsNlRYQil~GiE  180 (180)
T PF11891_consen  160 GWGAFMGVSSNLRYQILNGIE  180 (180)
T ss_pred             HHHHHHhhhHhHHHHHHcCCC
Confidence            999999999999999999987

This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.

>PRK05325 hypothetical protein; Provisional

Probab=91.16  E-value=0.42  Score=50.11  Aligned_cols=78  Identities=32%  Similarity=0.410  Sum_probs=36.2

Q ss_pred             CCcccccCCCccccCCCCcccccCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHHHHH
Q 015583           56 TPKTIEIPGKITEESADCEPRIHSSGGDGGA----GDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIE  131 (404)
Q Consensus        56 ~p~~~~i~gr~~~~~~~~~~~~~s~~g~g~~----g~~~~~~g~~~g~~ggg~~~g~~~~~~~~e~g~~l~~~~Vl~~a~  131 (404)
                      +.+.++|.+-+|+.-.|..+|-....|.|..    |+--+-..|+|+|+|.|+++|+|+|+-+    -=++.||.++.--
T Consensus        37 ~~v~IPi~~i~Ep~F~~g~~~~~~~Vg~Gn~~~~~GD~i~rp~g~g~G~G~~~~~geGeD~fe----~els~eE~~~~lf  112 (401)
T PRK05325         37 EVVSIPIRDIDEPKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEGEDYFE----FEISLEELLDLLF  112 (401)
T ss_pred             ceEEecCCCCccceEEeCCCCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHHH
Confidence            3577777777777666555422222222222    3332222222222223333333444443    3477888777665


Q ss_pred             HcCCCCh
Q 015583          132 LKGVGLP  138 (404)
Q Consensus       132 ~~~~sLP  138 (404)
                      ... .||
T Consensus       113 EdL-eLP  118 (401)
T PRK05325        113 EDL-ELP  118 (401)
T ss_pred             hhc-CCC
Confidence            433 344

>TIGR02877 spore_yhbH sporulation protein YhbH

Probab=91.16  E-value=0.45  Score=49.44  Aligned_cols=77  Identities=29%  Similarity=0.416  Sum_probs=36.1

Q ss_pred             CcccccCCCccccCC---CCcccccCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHHHHHH
Q 015583           57 PKTIEIPGKITEESA---DCEPRIHSSGGDGGAGDSPGGG-GGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIEL  132 (404)
Q Consensus        57 p~~~~i~gr~~~~~~---~~~~~~~s~~g~g~~g~~~~~~-g~~~g~~ggg~~~g~~~~~~~~e~g~~l~~~~Vl~~a~~  132 (404)
                      .+.++|.+=+|+.-.   +.+.+.+.+.|+---|+-=+-. +|+|||+|.|.|+|+|+|+=|    -=++.||.++.--.
T Consensus        50 ~V~IPir~l~Ep~F~~g~~~~~~Vg~Gng~~~~GD~i~rp~~~~ggg~g~gag~geGed~fe----~e~s~eE~~~~lfE  125 (371)
T TIGR02877        50 KIKVPIRGLKEYRFRYDWNKQKRVGQGDGNEKVGDVIGRERAGGEGGGGKGAGDQEGEDYYE----TEVTLEELFELLFE  125 (371)
T ss_pred             eEEccCCCCccceEEeCCCCCCeecCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHHHh
Confidence            477777777776443   3344445433332224331111 111112223344444554433    34778888877654


Q ss_pred             cCCCCh
Q 015583          133 KGVGLP  138 (404)
Q Consensus       133 ~~~sLP  138 (404)
                      -. .||
T Consensus       126 dL-eLP  130 (371)
T TIGR02877       126 DL-ELP  130 (371)
T ss_pred             hc-cCC
Confidence            43 354

This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.

>PLN03138 Protein TOC75; Provisional

Probab=91.00  E-value=0.53  Score=53.14  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=16.5

Q ss_pred             CcccccccCCCCCCCCCCCCcc
Q 015583            2 SACSSTFRLPNLPNISPQNHNI   23 (404)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~   23 (404)
                      ++|.+.++-++++.-.||+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~   26 (796)
T PLN03138          5 STMVSAAASTSLSSSRPQLSSF   26 (796)
T ss_pred             cccceeccCCCccCCCcccccc
Confidence            5788888888888877777543

>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56

Probab=86.22  E-value=1.5  Score=46.33  Aligned_cols=25  Identities=40%  Similarity=0.432  Sum_probs=13.4

Q ss_pred             CCCCCCCCCcccccCCccCHHHHHHHHHH
Q 015583          104 GGDGEGNDGEEKEFGPILKFEEVMKEIEL  132 (404)
Q Consensus       104 ~~~g~~~~~~~~e~g~~l~~~~Vl~~a~~  132 (404)
                      .|+|+|+|+-+    --++.||.++.--.
T Consensus       105 ag~geGeD~fe----~els~eE~~~llfE  129 (421)
T PF04285_consen  105 AGDGEGEDDFE----FELSREEFLDLLFE  129 (421)
T ss_pred             CCCCCCCCeEE----EEEEHHHHHHHhHH
Confidence            34444544333    45677777665443

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	404
2pk2_A	358	Cyclin-T1, protein TAT; TAR, twinning, transcripti	95.51
2pk2_A	358	Cyclin-T1, protein TAT; TAR, twinning, transcripti	94.11

>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C

Probab=95.51  E-value=0.0023  Score=63.23  Aligned_cols=7  Identities=43%  Similarity=0.995  Sum_probs=0.0

Q ss_pred             CCCCCCC
Q 015583           81 GGDGGAG   87 (404)
Q Consensus        81 ~g~g~~g   87 (404)
                      ++.||+|
T Consensus       279 ~~~~~~~  285 (358)
T 2pk2_A          279 SEQGGTG  285 (358)
T ss_dssp             -------
T ss_pred             cccCCCC
Confidence            3344443

>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C

Probab=94.11  E-value=0.0089  Score=59.05  Aligned_cols=7  Identities=0%  Similarity=0.031  Sum_probs=0.0

Q ss_pred             cCCCCcc
Q 015583           69 ESADCEP   75 (404)
Q Consensus        69 ~~~~~~~   75 (404)
                      ++...-.
T Consensus       273 ~~~~s~~  279 (358)
T 2pk2_A          273 GTDEKTS  279 (358)
T ss_dssp             -------
T ss_pred             ccccccc
Confidence            3333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00