Citrus Sinensis ID: 015591
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 404 | 2.2.26 [Sep-21-2011] | |||||||
| Q5W274 | 1447 | Pleiotropic drug resistan | N/A | no | 0.985 | 0.275 | 0.753 | 0.0 | |
| Q9LFH0 | 1450 | ABC transporter G family | yes | no | 0.987 | 0.275 | 0.713 | 1e-174 | |
| Q9ZUT8 | 1413 | ABC transporter G family | no | no | 0.982 | 0.280 | 0.688 | 1e-165 | |
| Q8GZ52 | 1400 | ABC transporter G family | no | no | 0.945 | 0.272 | 0.620 | 1e-145 | |
| Q7PC82 | 1392 | ABC transporter G family | no | no | 0.928 | 0.269 | 0.615 | 1e-142 | |
| Q7PC83 | 1397 | ABC transporter G family | no | no | 0.945 | 0.273 | 0.610 | 1e-142 | |
| Q7PC81 | 1390 | ABC transporter G family | no | no | 0.928 | 0.269 | 0.605 | 1e-141 | |
| Q8GU86 | 1454 | Pleiotropic drug resistan | yes | no | 0.977 | 0.271 | 0.557 | 1e-133 | |
| Q2PCF1 | 1461 | Pleiotropic drug resistan | N/A | no | 0.985 | 0.272 | 0.558 | 1e-131 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | yes | no | 0.992 | 0.273 | 0.557 | 1e-131 |
| >sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 633 bits (1632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/401 (75%), Positives = 353/401 (88%), Gaps = 3/401 (0%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFRF+ASV +T+VA+ AG +IL VL F GF+I +PSMP+WLKWGFWISP+TYGEIGL+
Sbjct: 672 MFRFLASVCRTIVASTAAGGLSILFVLCFSGFIIPRPSMPIWLKWGFWISPLTYGEIGLA 731
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
+NEFLAPRWQK LPTNT+IG E+LESRGLNFDGY +WIS+ ALFGF +L NIGFTLALTF
Sbjct: 732 VNEFLAPRWQKTLPTNTSIGNEVLESRGLNFDGYFYWISVCALFGFTILFNIGFTLALTF 791
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
LK GS R++IS +K+S++ S DS +S++T +++ + G+MVLPFEPL++
Sbjct: 792 LKAPGS-RAIISTDKYSQIEGSSDSIDKADAAENSKATMDSHERA--GRMVLPFEPLSLV 848
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQD++YY+DTP M E GFT+K+L+LL D+TG+LRPG+LTALMGVSGAGKTTLLDVLAGR
Sbjct: 849 FQDVQYYVDTPAAMTELGFTQKRLQLLSDITGALRPGILTALMGVSGAGKTTLLDVLAGR 908
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KTTG +EGEIK+GGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL P+I+SK
Sbjct: 909 KTTGYVEGEIKVGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLHPQIDSK 968
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK EFV EV+ETIELDGIK LVG+PGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTTG
Sbjct: 969 TKYEFVKEVIETIELDGIKGMLVGMPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1028
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDAR+AAI+MRAVKNV DTGRTIVCTIHQPSIDIFEAFDE+
Sbjct: 1029 LDARSAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDEL 1069
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9LFH0|AB37G_ARATH ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 610 bits (1572), Expect = e-174, Method: Compositional matrix adjust.
Identities = 286/401 (71%), Positives = 347/401 (86%), Gaps = 2/401 (0%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR +A++FQTVVA++TAGSF IL +F GFVI PSMP WLKWGFW +P++YGEIGLS
Sbjct: 674 MFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLS 733
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
+NEFLAPRW +M P N T+G+ IL++RG++++GY++W+SL AL GF +L NI FTLALTF
Sbjct: 734 VNEFLAPRWNQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTF 793
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
LK+ SSR+MIS +K SE++ +E ST V+ + +P+ +E + KMVLPF+PLTV
Sbjct: 794 LKSPTSSRAMISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTEE--EDKMVLPFKPLTVT 851
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQDL Y++D P+EMR++G+ +KKL+LL D+TG+ RPG+LTALMGVSGAGKTTLLDVLAGR
Sbjct: 852 FQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGR 911
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT+G +EG+I+I G+PKVQETFARVSGYCEQTDIHSP ITVEESVI+SAWLRLAPEI++
Sbjct: 912 KTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDAT 971
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK +FV +VLETIELD IKDSLVG+ GV+GLSTEQRKRLTIAVELVANPSIIFMDEPTTG
Sbjct: 972 TKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1031
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKNV DTGRTIVCTIHQPSIDIFEAFDE+
Sbjct: 1032 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDEL 1072
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUT8|AB33G_ARATH ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1501), Expect = e-165, Method: Compositional matrix adjust.
Identities = 276/401 (68%), Positives = 335/401 (83%), Gaps = 4/401 (0%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR +A++FQT VAAMTAGSF +L+ +F GF I MP WLKWGFW++P++Y EIGLS
Sbjct: 639 MFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLS 698
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
+NEFLAPRWQKM PTN T+G+ ILESRGLN+D Y++W+SL AL G ++ N FTLAL+F
Sbjct: 699 VNEFLAPRWQKMQPTNVTLGRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSF 758
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
LK+ SSR MIS +K SE++ ++DS+ + K + + E GKM+LPF+PLT+
Sbjct: 759 LKSPTSSRPMISQDKLSELQGTKDSS---VKKNKPLDSSIKTNED-PGKMILPFKPLTIT 814
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQDL YY+D P+EM+ +G+ EKKL+LL ++TG+ RPGVLTALMG+SGAGKTTLLDVLAGR
Sbjct: 815 FQDLNYYVDVPVEMKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGR 874
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT+G +EGEI+I G+ KVQETFARVSGYCEQTDIHSP ITVEES+I+SAWLRL PEIN +
Sbjct: 875 KTSGYIEGEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQ 934
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK FV +VLETIEL+ IKD+LVG+ GV+GLSTEQRKRLT+AVELVANPSIIFMDEPTTG
Sbjct: 935 TKIRFVKQVLETIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTG 994
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKNV +TGRTIVCTIHQPSI IFEAFDE+
Sbjct: 995 LDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDEL 1035
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 514 bits (1324), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/401 (62%), Positives = 311/401 (77%), Gaps = 19/401 (4%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR +A++F+T++A+ G+ +IL++ LFGGFVI K SMP WL WGFW+SP++Y EIGL+
Sbjct: 641 MFRAIAAIFRTIIASTITGAISILVLSLFGGFVIPKSSMPAWLGWGFWLSPLSYAEIGLT 700
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
NEF +PRW K++ + TT G+++L+ RGLNF + +W + GAL GF L N + LALT+
Sbjct: 701 ANEFFSPRWSKVISSKTTAGEQMLDIRGLNFGRHSYWTAFGALVGFVLFFNALYVLALTY 760
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
SR++IS EK+S + ED + P + GK++LPF+PLTV
Sbjct: 761 QNNPQRSRAIISHEKYSR-PIEEDF----------KPCPKITSRAKTGKIILPFKPLTVT 809
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQ+++YYI+TP K +LL D+TG+L+PGVLT+LMGVSGAGKTTLLDVL+GR
Sbjct: 810 FQNVQYYIETP--------QGKTRQLLSDITGALKPGVLTSLMGVSGAGKTTLLDVLSGR 861
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT G ++GEIK+GGYPKVQETFARVSGYCEQ DIHSP ITVEES+ +SAWLRL I+SK
Sbjct: 862 KTRGIIKGEIKVGGYPKVQETFARVSGYCEQFDIHSPNITVEESLKYSAWLRLPYNIDSK 921
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK E V EVLET+ELD IKDS+VG+PG++GLS EQRKRLTIAVELVANPSIIFMDEPTTG
Sbjct: 922 TKNELVKEVLETVELDDIKDSVVGLPGISGLSIEQRKRLTIAVELVANPSIIFMDEPTTG 981
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKNV +TGRT+VCTIHQPSIDIFE FDE+
Sbjct: 982 LDARAAAIVMRAVKNVAETGRTVVCTIHQPSIDIFETFDEL 1022
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/401 (61%), Positives = 310/401 (77%), Gaps = 26/401 (6%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR +A+VF+ V A T GS +I+L+ +FGGF++ KPSMP WL+WGFW+SP++Y EIGL+
Sbjct: 640 MFRAIAAVFRDFVVATTVGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIGLT 699
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
NEF APRW K+ N T+G+++L++RGLNF +W + GAL GF L N F LALTF
Sbjct: 700 ANEFFAPRWGKITSENRTLGEQVLDARGLNFGNQSYWNAFGALIGFTLFFNTVFALALTF 759
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
LKTS SR ++S EK +++S+ +K + + K LPFEPLT
Sbjct: 760 LKTSQRSRVIVSHEK------------------NTQSSENDSKIASRFKNALPFEPLTFT 801
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQD++Y I+TP KKL+LL VTG+ +PGVLTALMGVSGAGKTTLLDVL+GR
Sbjct: 802 FQDVQYIIETP--------QGKKLQLLSGVTGAFKPGVLTALMGVSGAGKTTLLDVLSGR 853
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT G ++G+I++GGY KVQ+TF+RVSGYCEQ DIHSP +TV+ES+ +SAWLRL I+S+
Sbjct: 854 KTFGDIKGQIEVGGYVKVQDTFSRVSGYCEQFDIHSPNLTVQESLKYSAWLRLTSNISSE 913
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK VNEVLETIEL+ IKDS+VGIPG++GL+TEQRKRLTIAVELV+NPSIIFMDEPTTG
Sbjct: 914 TKCAIVNEVLETIELEEIKDSIVGIPGISGLTTEQRKRLTIAVELVSNPSIIFMDEPTTG 973
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKN+ +TGRT+VCTIHQPSIDIFEAFDE+
Sbjct: 974 LDARAAAIVMRAVKNIAETGRTVVCTIHQPSIDIFEAFDEL 1014
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/401 (61%), Positives = 309/401 (77%), Gaps = 19/401 (4%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR +AS+ +T VA G+ ++LL+ LFGGFVI K SMP WL WGFW+SP++Y EIGL+
Sbjct: 638 MFRAIASICRTFVACSITGAISVLLLALFGGFVIPKSSMPTWLGWGFWLSPLSYAEIGLT 697
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
NEF +PRW+K+ N T G+++L+ RGLNF + +W + GAL GF L N +TLALT+
Sbjct: 698 ANEFFSPRWRKLTSGNITAGEQVLDVRGLNFGRHSYWTAFGALVGFVLFFNALYTLALTY 757
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
SR+++S K S+ SE+ + P + GK++LPF+PLTV
Sbjct: 758 RNNPQRSRAIVSHGKNSQ--CSEEDF---------KPCPEITSRAKTGKVILPFKPLTVT 806
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQ+++YYI+TP K +LL+D+TG+L+PGVLT+LMGVSGAGKTTLLDVL+GR
Sbjct: 807 FQNVQYYIETP--------QGKTRQLLFDITGALKPGVLTSLMGVSGAGKTTLLDVLSGR 858
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT G ++GEI++GGYPKVQETFARVSGYCEQ DIHSP ITVEES+ +SAWLRL I++K
Sbjct: 859 KTRGIIKGEIRVGGYPKVQETFARVSGYCEQFDIHSPNITVEESLKYSAWLRLPYNIDAK 918
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK E V EVLET+EL+ IKDS+VG+PG++GLSTEQRKRLTIAVELV+NPSIIF+DEPTTG
Sbjct: 919 TKNELVKEVLETVELEDIKDSMVGLPGISGLSTEQRKRLTIAVELVSNPSIIFLDEPTTG 978
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKNV +TGRT+VCTIHQPSIDIFE FDE+
Sbjct: 979 LDARAAAIVMRAVKNVAETGRTVVCTIHQPSIDIFETFDEL 1019
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/401 (60%), Positives = 309/401 (77%), Gaps = 26/401 (6%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR + +VF+ A T GS +I+L+ +FGGF++ KPSMP WL+WGFW+SP++Y EIGL+
Sbjct: 638 MFRAIGAVFRDFDVATTIGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIGLT 697
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
NEF AP W+KM N T+G+++L++RGLNF +W + GAL GF L N F LALTF
Sbjct: 698 SNEFFAPMWRKMTSENRTLGEQVLDARGLNFGNQSYWNAFGALIGFTLFFNTVFALALTF 757
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
LKTS SR ++S +K +++S+ +K + K LPFEPLT
Sbjct: 758 LKTSQRSRVIVSHDK------------------NTQSSEKDSKIASHSKNALPFEPLTFT 799
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQD++Y+I+TP KKL+LL DVTG+ +PGVLTALMGVSGAGKTTLLDVL+GR
Sbjct: 800 FQDVQYFIETP--------QGKKLQLLSDVTGAFKPGVLTALMGVSGAGKTTLLDVLSGR 851
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT G ++G+I++GGY KVQ+TF+RVSGYCEQ DIHSP +TV+ES+ +SAWLRL I+S+
Sbjct: 852 KTRGDIKGQIEVGGYVKVQDTFSRVSGYCEQFDIHSPNLTVQESLKYSAWLRLPCNISSE 911
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK+ VNEVLETIEL+ IKDSLVG+PG++G++ EQRKRLTIAVELV+NPSIIFMDEPTTG
Sbjct: 912 TKSAIVNEVLETIELEEIKDSLVGVPGISGVTAEQRKRLTIAVELVSNPSIIFMDEPTTG 971
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKN+ +TGRT+VCTIHQPSIDIFEAFDE+
Sbjct: 972 LDARAAAIVMRAVKNIAETGRTVVCTIHQPSIDIFEAFDEL 1012
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU86|PDR5_ORYSJ Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 476 bits (1226), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 311/409 (76%), Gaps = 14/409 (3%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FR + ++ +++V A T G F +LL+ LFGGF++S+ + W WG+W SP+ Y LS
Sbjct: 672 LFRLLGAILRSMVVANTFGMFVLLLIFLFGGFLVSRKDIKPWWIWGYWTSPMMYSNNALS 731
Query: 61 LNEFLAPRWQKMLPTNT------TIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGF 114
+NEFLA RW +P N TIG+ L+S+G + +W+S+GA+ GF ++ NI +
Sbjct: 732 VNEFLASRWA--IPNNDSSISAPTIGKAFLQSKGYFTGEWGYWLSIGAMIGFMIVFNILY 789
Query: 115 TLALTFLKTSGSSRSMISLEKF-SEMRV-SEDSTSGEIVKGHSRSTPMTNKESYKGKMVL 172
ALTFL+ GS+ +++S + SE+ S E++ G + N+ S +G MVL
Sbjct: 790 LCALTFLRPIGSASTVVSDDDTKSELEAESNQEQMSEVING---TNGTENRRSQRG-MVL 845
Query: 173 PFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTT 232
PF+PL+++F + YY+D P EM+ +GFTE +L+LL D++G+ RPGVLTAL+GVSGAGKTT
Sbjct: 846 PFQPLSLSFNHMNYYVDMPAEMKAQGFTESRLQLLSDISGAFRPGVLTALVGVSGAGKTT 905
Query: 233 LLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292
L+DVLAGRKT+G++EG+IK+ GYPK QETFAR+SGYCEQTDIHSP +TV ES+++SAWLR
Sbjct: 906 LMDVLAGRKTSGTIEGDIKLSGYPKKQETFARISGYCEQTDIHSPNLTVYESIVYSAWLR 965
Query: 293 LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 352
L+ E++ T+ FV EV+ +ELD ++D+LVG+PGV+GLSTEQRKRLTIAVELVANPSII
Sbjct: 966 LSSEVDKNTRKVFVEEVMSLVELDVLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1025
Query: 353 FMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
FMDEPT+GLDARAAAI+MR V+N V+TGRT+VCTIHQPSIDIFE+FDE+
Sbjct: 1026 FMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFESFDEL 1074
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q2PCF1|PDR2_NICPL Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/412 (55%), Positives = 306/412 (74%), Gaps = 14/412 (3%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FRF+A+ +T V A T G+F +L+V + GGF++SK + W+ WG+++SP+ YG+ ++
Sbjct: 673 LFRFIAAAGRTQVVANTLGTFTLLMVFILGGFIVSKDDIQDWMIWGYYLSPMMYGQNAIA 732
Query: 61 LNEFLAPRWQKMLPTN---TTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLA 117
+NEFL RW PTN T+G+ +L +RGL +WIS+GALFGF+LL N+ F A
Sbjct: 733 INEFLDDRWSA--PTNGSQPTVGKTLLHARGLFTTESWYWISIGALFGFSLLFNVLFIAA 790
Query: 118 LTFLKTSGSSRSM-ISLEKFSEMRVSEDSTSGEIVKGHSRST-------PMTNKESYKGK 169
LTFL G ++++ + + R E + G+I +RS P N ES KG
Sbjct: 791 LTFLNPIGDTKAVKVENGDKNNRRPQETAIVGDIQMAPTRSQANTSSVIPFPNNESRKG- 849
Query: 170 MVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAG 229
M+LPF+PL++AF + YY+D P EM+ +G E++L+LL D +G+ RPG+LTAL+GVSGAG
Sbjct: 850 MILPFQPLSLAFNHVNYYVDMPAEMKTQGVEEERLQLLRDASGAFRPGILTALVGVSGAG 909
Query: 230 KTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSA 289
KTTL+DVLAGRKT G +EG I I GYPK Q TFARVSGYCEQ DIHSP +TV ES+++SA
Sbjct: 910 KTTLMDVLAGRKTGGYIEGSINISGYPKNQTTFARVSGYCEQNDIHSPYVTVYESLLYSA 969
Query: 290 WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349
WLRLA ++ ++T+ FV EV+E +EL ++++LVG+PGV+GLSTEQRKRLT AVELVANP
Sbjct: 970 WLRLASDVKTETRKMFVEEVMELVELKLLRNALVGLPGVDGLSTEQRKRLTTAVELVANP 1029
Query: 350 SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
SIIFMDEPT+GLDARAAAI+MR V+ VDTGRT+VCTIHQPSIDIFEAFDE+
Sbjct: 1030 SIIFMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFDEL 1081
|
May be a general defense protein. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 297/416 (71%), Gaps = 15/416 (3%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FRFV + ++ A GSF +L+ ++ GGF++ + + W WG+WISP+ Y + +S
Sbjct: 674 LFRFVGGAARNMIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAIS 733
Query: 61 LNEFLAPRWQKMLP---TNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLA 117
+NEFL W K+L +N T+G + L SRG+ + +WI GAL GF +L N FTLA
Sbjct: 734 VNEFLGHSWDKVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLA 793
Query: 118 LTFLKTSGSSRSMISLEKFSEMRVS-----------EDSTSGEIVKGHSRSTPMT-NKES 165
LT+LK G S+ +S E+ E + + ST+ IV S+ + N +
Sbjct: 794 LTYLKPYGKSQPSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQP 853
Query: 166 YKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGV 225
+ MVLPF PL++ F ++KY +D P EM+ G E +L LL V+GS RPGVLTALMGV
Sbjct: 854 TQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGV 913
Query: 226 SGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESV 285
SGAGKTTL+DVLAGRKT G +EG I I GYPK QETFARVSGYCEQ DIHSPQ+TV ES+
Sbjct: 914 SGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESL 973
Query: 286 IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL 345
+FSAWLRL +++S T+ F+ EV+E +EL ++D+LVG+PGVNGLSTEQRKRLTIAVEL
Sbjct: 974 LFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVEL 1033
Query: 346 VANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
VANPSIIFMDEPT+GLDARAAAI+MR V+N VDTGRT+VCTIHQPSIDIFEAFDE+
Sbjct: 1034 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1089
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 404 | ||||||
| 225450466 | 1448 | PREDICTED: pleiotropic drug resistance p | 0.992 | 0.276 | 0.778 | 0.0 | |
| 296089838 | 1406 | unnamed protein product [Vitis vinifera] | 0.992 | 0.285 | 0.778 | 1e-180 | |
| 75321780 | 1447 | RecName: Full=Pleiotropic drug resistanc | 0.985 | 0.275 | 0.753 | 1e-179 | |
| 449524702 | 1345 | PREDICTED: pleiotropic drug resistance p | 0.905 | 0.272 | 0.740 | 1e-177 | |
| 224099040 | 1476 | predicted protein [Populus trichocarpa] | 0.987 | 0.270 | 0.727 | 1e-175 | |
| 449445399 | 1440 | PREDICTED: pleiotropic drug resistance p | 0.972 | 0.272 | 0.740 | 1e-175 | |
| 297816648 | 1450 | ATPDR9/PDR9 [Arabidopsis lyrata subsp. l | 0.987 | 0.275 | 0.720 | 1e-174 | |
| 224112072 | 1455 | predicted protein [Populus trichocarpa] | 0.992 | 0.275 | 0.713 | 1e-174 | |
| 15231821 | 1450 | ABC transporter G family member 37 [Arab | 0.987 | 0.275 | 0.713 | 1e-172 | |
| 147780242 | 1417 | hypothetical protein VITISV_037751 [Viti | 0.948 | 0.270 | 0.753 | 1e-172 |
| >gi|225450466|ref|XP_002280231.1| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/402 (77%), Positives = 367/402 (91%), Gaps = 1/402 (0%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFRF ASV +T+VA+ TAGSFAILLVLLFGGF+I +PSMP WLKW FWISP+TYGEIGL+
Sbjct: 669 MFRFFASVSRTMVASATAGSFAILLVLLFGGFIIPQPSMPDWLKWAFWISPMTYGEIGLA 728
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
+NEFLAPRWQK L TNTT+G+E LE+RGLNFDGYLFWISL ALFG ++ NIGFTLAL+F
Sbjct: 729 VNEFLAPRWQKTLSTNTTLGRETLENRGLNFDGYLFWISLAALFGVTIIFNIGFTLALSF 788
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTP-MTNKESYKGKMVLPFEPLTV 179
L+ G SR++IS EK S+++ + ST+G + S++ P T KE+ G+MVLPF+PLTV
Sbjct: 789 LQAPGKSRAIISHEKLSQLQGRDQSTNGAYEEKESKNPPPKTTKEADIGRMVLPFQPLTV 848
Query: 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239
+FQD++YY+DTP+EMR++GF +KKL LL+DVTGSLRPGVLTALMGVSGAGKTTL+DVLAG
Sbjct: 849 SFQDVQYYVDTPVEMRQKGFAQKKLHLLHDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG 908
Query: 240 RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINS 299
RKT+G++EGEI+IGGYPKVQETFAR+SGYCEQTDIHSPQIT+EESVIFSAWLRL+P+I+S
Sbjct: 909 RKTSGTIEGEIRIGGYPKVQETFARISGYCEQTDIHSPQITIEESVIFSAWLRLSPQIDS 968
Query: 300 KTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359
KTKAEFVNEVLETIELDGIKD+LVG+PGV GLSTEQRKRLTIAVELV+NPSIIFMDEPT+
Sbjct: 969 KTKAEFVNEVLETIELDGIKDALVGMPGVGGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 1028
Query: 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
GLDARAAA++MRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE+
Sbjct: 1029 GLDARAAAVVMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEL 1070
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089838|emb|CBI39657.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 313/402 (77%), Positives = 367/402 (91%), Gaps = 1/402 (0%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFRF ASV +T+VA+ TAGSFAILLVLLFGGF+I +PSMP WLKW FWISP+TYGEIGL+
Sbjct: 627 MFRFFASVSRTMVASATAGSFAILLVLLFGGFIIPQPSMPDWLKWAFWISPMTYGEIGLA 686
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
+NEFLAPRWQK L TNTT+G+E LE+RGLNFDGYLFWISL ALFG ++ NIGFTLAL+F
Sbjct: 687 VNEFLAPRWQKTLSTNTTLGRETLENRGLNFDGYLFWISLAALFGVTIIFNIGFTLALSF 746
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTP-MTNKESYKGKMVLPFEPLTV 179
L+ G SR++IS EK S+++ + ST+G + S++ P T KE+ G+MVLPF+PLTV
Sbjct: 747 LQAPGKSRAIISHEKLSQLQGRDQSTNGAYEEKESKNPPPKTTKEADIGRMVLPFQPLTV 806
Query: 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239
+FQD++YY+DTP+EMR++GF +KKL LL+DVTGSLRPGVLTALMGVSGAGKTTL+DVLAG
Sbjct: 807 SFQDVQYYVDTPVEMRQKGFAQKKLHLLHDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG 866
Query: 240 RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINS 299
RKT+G++EGEI+IGGYPKVQETFAR+SGYCEQTDIHSPQIT+EESVIFSAWLRL+P+I+S
Sbjct: 867 RKTSGTIEGEIRIGGYPKVQETFARISGYCEQTDIHSPQITIEESVIFSAWLRLSPQIDS 926
Query: 300 KTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359
KTKAEFVNEVLETIELDGIKD+LVG+PGV GLSTEQRKRLTIAVELV+NPSIIFMDEPT+
Sbjct: 927 KTKAEFVNEVLETIELDGIKDALVGMPGVGGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 986
Query: 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
GLDARAAA++MRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE+
Sbjct: 987 GLDARAAAVVMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEL 1028
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75321780|sp|Q5W274.1|PDR3_TOBAC RecName: Full=Pleiotropic drug resistance protein 3; AltName: Full=NtPDR3 gi|55056942|emb|CAH39853.1| PDR-like ABC transporter [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 302/401 (75%), Positives = 353/401 (88%), Gaps = 3/401 (0%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFRF+ASV +T+VA+ AG +IL VL F GF+I +PSMP+WLKWGFWISP+TYGEIGL+
Sbjct: 672 MFRFLASVCRTIVASTAAGGLSILFVLCFSGFIIPRPSMPIWLKWGFWISPLTYGEIGLA 731
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
+NEFLAPRWQK LPTNT+IG E+LESRGLNFDGY +WIS+ ALFGF +L NIGFTLALTF
Sbjct: 732 VNEFLAPRWQKTLPTNTSIGNEVLESRGLNFDGYFYWISVCALFGFTILFNIGFTLALTF 791
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
LK GS R++IS +K+S++ S DS +S++T +++ + G+MVLPFEPL++
Sbjct: 792 LKAPGS-RAIISTDKYSQIEGSSDSIDKADAAENSKATMDSHERA--GRMVLPFEPLSLV 848
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQD++YY+DTP M E GFT+K+L+LL D+TG+LRPG+LTALMGVSGAGKTTLLDVLAGR
Sbjct: 849 FQDVQYYVDTPAAMTELGFTQKRLQLLSDITGALRPGILTALMGVSGAGKTTLLDVLAGR 908
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KTTG +EGEIK+GGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL P+I+SK
Sbjct: 909 KTTGYVEGEIKVGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLHPQIDSK 968
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK EFV EV+ETIELDGIK LVG+PGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTTG
Sbjct: 969 TKYEFVKEVIETIELDGIKGMLVGMPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1028
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDAR+AAI+MRAVKNV DTGRTIVCTIHQPSIDIFEAFDE+
Sbjct: 1029 LDARSAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDEL 1069
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449524702|ref|XP_004169360.1| PREDICTED: pleiotropic drug resistance protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust.
Identities = 297/401 (74%), Positives = 347/401 (86%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR +AS+FQ+ A++T G+F IL LLFGGF+IS PS+P WLKWGFW+SP++YGEIGLS
Sbjct: 567 MFRMIASIFQSNGASLTVGNFVILFALLFGGFIISHPSIPAWLKWGFWVSPISYGEIGLS 626
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
LNEFLAPRWQK+ TNTTIG E+L+SRGL++ ++WIS+ ALFG A + NIG+ LALTF
Sbjct: 627 LNEFLAPRWQKVQATNTTIGHEVLQSRGLDYHKSMYWISVAALFGLAFIFNIGYVLALTF 686
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
L GSSR++IS EK S+ + SE+ G + T ES KG++ LPF PLTV
Sbjct: 687 LNPPGSSRAIISYEKLSQSKNSEECDGGGGATSVEQGPFKTVIESKKGRIALPFRPLTVV 746
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQDL+YY+D PLEM+ERGFT+KKL+LL D+TG+LRPGVLTALMGVSGAGKTTLLDVLAGR
Sbjct: 747 FQDLQYYVDMPLEMKERGFTQKKLQLLSDITGALRPGVLTALMGVSGAGKTTLLDVLAGR 806
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT+G +EGEIKIGG+PKVQETFAR+SGYCEQTDIHSPQITVEES+IFSAWLRLA +++ K
Sbjct: 807 KTSGYIEGEIKIGGFPKVQETFARISGYCEQTDIHSPQITVEESLIFSAWLRLASDVDLK 866
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TKA+FVNEV+ETIELDGIKD LVGIPGV+GLSTEQRKRLTIAVELV NPSIIFMDEPTTG
Sbjct: 867 TKAQFVNEVIETIELDGIKDMLVGIPGVSGLSTEQRKRLTIAVELVTNPSIIFMDEPTTG 926
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKNVVDTGRTIVCTIHQPSIDIFE+FDE+
Sbjct: 927 LDARAAAIVMRAVKNVVDTGRTIVCTIHQPSIDIFESFDEL 967
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099040|ref|XP_002311359.1| predicted protein [Populus trichocarpa] gi|222851179|gb|EEE88726.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 293/403 (72%), Positives = 349/403 (86%), Gaps = 4/403 (0%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFRFVAS+FQT VA+MTAGS AI+ LLFGGFVI KPSMP WL+WGFWISP+TYGEIGL+
Sbjct: 698 MFRFVASIFQTAVASMTAGSIAIMGCLLFGGFVIPKPSMPAWLQWGFWISPITYGEIGLT 757
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
NEFLAPRW+K++ NTTIGQ+ LESRGLNF GY +WIS+GAL G ALL NIGFTLALTF
Sbjct: 758 TNEFLAPRWEKIVSGNTTIGQQTLESRGLNFHGYFYWISVGALMGLALLFNIGFTLALTF 817
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSG--EIVKGHSRSTPMTNKESYKGKMVLPFEPLT 178
LK G+SR++IS E++ +++ +D G E K HS + + KG+MVLPFEPL
Sbjct: 818 LKPPGNSRAIISYERYYQLQGRKDDVDGFDEDKKLHSANESSPGPK--KGRMVLPFEPLV 875
Query: 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238
+ F+D++YY+DTPLEMR+RG +KKL+LL D+TG+ RPG+LTALMGVSGAGKTTL+DVL+
Sbjct: 876 MTFKDVQYYVDTPLEMRKRGVLQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLMDVLS 935
Query: 239 GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN 298
GRKT G+ EGEI+IGGYPKVQ+TFAR+SGYCEQ DIHSPQIT+EESV+FSAWLRL I+
Sbjct: 936 GRKTGGTTEGEIRIGGYPKVQDTFARISGYCEQADIHSPQITIEESVVFSAWLRLPSVID 995
Query: 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358
KTK +FVNEVLETIELD IKDSLVGIPG++GLSTEQRKRLTIAVELV+NPS+IFMDEPT
Sbjct: 996 PKTKFDFVNEVLETIELDWIKDSLVGIPGISGLSTEQRKRLTIAVELVSNPSVIFMDEPT 1055
Query: 359 TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
+GLDARAAAI+MRA KN+V+TGRT++CTIHQPSIDIFEAFDE+
Sbjct: 1056 SGLDARAAAIVMRAAKNIVETGRTVICTIHQPSIDIFEAFDEL 1098
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445399|ref|XP_004140460.1| PREDICTED: pleiotropic drug resistance protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 297/401 (74%), Positives = 345/401 (86%), Gaps = 8/401 (1%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR VA VFQT VA+M GSFAIL VL+FGGF+I+ PSMP WL+W FW SP++YGEI LS
Sbjct: 670 MFRLVAGVFQTNVASMAVGSFAILTVLIFGGFIIAHPSMPAWLEWAFWASPISYGEIALS 729
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
NEFLAPRWQK+ +N+TIG ++L+SRGL++ Y FWISL ALFGFALL N+GF LALTF
Sbjct: 730 TNEFLAPRWQKLEASNSTIGHDVLQSRGLDYRPYFFWISLAALFGFALLFNVGFALALTF 789
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
L GSSR++IS EK S+ + ++S S E P T ES + ++ LPF+PLTV
Sbjct: 790 LNPPGSSRAIISYEKLSKSKNRQESISVE-------QAP-TAVESIQARLALPFKPLTVV 841
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQDL+YY+D PLEMRERG ++KKL+LL D+TG+LRPG+LTALMGVSGAGKTTLLDVLAGR
Sbjct: 842 FQDLQYYVDMPLEMRERGASQKKLQLLSDITGALRPGILTALMGVSGAGKTTLLDVLAGR 901
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT+G +EGEI+IGG+PKVQETFAR+SGYCEQTDIHSP ITVEES+IFSAWLRL +IN K
Sbjct: 902 KTSGYVEGEIRIGGFPKVQETFARISGYCEQTDIHSPHITVEESLIFSAWLRLPSDINLK 961
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
T+A+FVNEVLETIELD IKDSLVGIPGV+GLSTEQRKRLTIAVELV+NPSIIFMDEPTTG
Sbjct: 962 TRAQFVNEVLETIELDSIKDSLVGIPGVSGLSTEQRKRLTIAVELVSNPSIIFMDEPTTG 1021
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKNVVDTGRTIVCTIHQPSIDIFE+FDE+
Sbjct: 1022 LDARAAAIVMRAVKNVVDTGRTIVCTIHQPSIDIFESFDEL 1062
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816648|ref|XP_002876207.1| ATPDR9/PDR9 [Arabidopsis lyrata subsp. lyrata] gi|297322045|gb|EFH52466.1| ATPDR9/PDR9 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 289/401 (72%), Positives = 350/401 (87%), Gaps = 2/401 (0%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR +A++FQTVVA++TAGSF IL +F GFVI PSMP WLKWGFW++P++YGEIGLS
Sbjct: 674 MFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWVNPLSYGEIGLS 733
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
+NEFLAPRW +M P N T+G+ IL++RG+++DGY++W+SL AL GF +L NI FTLALTF
Sbjct: 734 VNEFLAPRWNQMQPNNVTLGRTILQTRGMDYDGYMYWVSLYALLGFTVLFNIIFTLALTF 793
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
LK+ SSR+MIS +K SE++ +E+ST VK + +P+ +E +G MVLPF+PLTV
Sbjct: 794 LKSPTSSRAMISQDKLSELQGTENSTDDSSVKKKTTDSPVKTEE--EGNMVLPFKPLTVT 851
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQDLKY++D P+EMR++G+ +KKL+LL D+TG+ RPG+LTALMGVSGAGKTTLLDVLAGR
Sbjct: 852 FQDLKYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGR 911
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT+G +EG+I+I G+PK+QETFARVSGYCEQTDIHSP ITVEESVI+SAWLRLAPEI+S
Sbjct: 912 KTSGYIEGDIRISGFPKIQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDSA 971
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK +FV +VLETIELD IKDSLVG+ GV+GLSTEQRKRLTIAVELVANPSIIFMDEPTTG
Sbjct: 972 TKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1031
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKNV DTGRTIVCTIHQPSIDIFEAFDE+
Sbjct: 1032 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDEL 1072
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112072|ref|XP_002316074.1| predicted protein [Populus trichocarpa] gi|222865114|gb|EEF02245.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust.
Identities = 289/405 (71%), Positives = 347/405 (85%), Gaps = 4/405 (0%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFRFVAS+FQT+VA++TAG A+L+ LLFGGF+I KPSMPVWL WGFWISP+ YGEIGLS
Sbjct: 673 MFRFVASLFQTMVASVTAGGLALLITLLFGGFLIPKPSMPVWLGWGFWISPLAYGEIGLS 732
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
LNEFL PRW K + NTTI Q+ LESRGLNF GY +WIS+GAL G +L N+GF LALTF
Sbjct: 733 LNEFLTPRWAKTVSGNTTIQQQTLESRGLNFHGYFYWISVGALIGLTVLFNVGFALALTF 792
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSR----STPMTNKESYKGKMVLPFEP 176
LK+ G+SR++IS E++ + + D + + + + P ++ KG+M LPFEP
Sbjct: 793 LKSPGNSRAIISYERYYQQQGKLDDGASFDINNDKKTLTCACPKSSPGDKKGRMALPFEP 852
Query: 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDV 236
LT+ F+D++YY+DTPLEMR+RGF +KKL+LL D+TG+ RPG+LTALMGVSGAGKTTL+DV
Sbjct: 853 LTMTFKDVRYYVDTPLEMRKRGFPQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLMDV 912
Query: 237 LAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE 296
L+GRKT G++EGEI+IGGYPKVQ +FARVSGYCEQTDIHSPQITVEESVI+SAWLRL PE
Sbjct: 913 LSGRKTGGTIEGEIRIGGYPKVQHSFARVSGYCEQTDIHSPQITVEESVIYSAWLRLPPE 972
Query: 297 INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356
I++KTK EFVN+VLETIELD IKDSLVGIPG++GLS EQRKRLT+AVELVANPSIIFMDE
Sbjct: 973 IDTKTKYEFVNQVLETIELDEIKDSLVGIPGISGLSIEQRKRLTVAVELVANPSIIFMDE 1032
Query: 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
PT+GLDARAAAI+MR VKN+V+TGRTIVCTIHQPSIDIFEAFDE+
Sbjct: 1033 PTSGLDARAAAIVMRVVKNIVETGRTIVCTIHQPSIDIFEAFDEL 1077
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231821|ref|NP_190916.1| ABC transporter G family member 37 [Arabidopsis thaliana] gi|75334941|sp|Q9LFH0.1|AB37G_ARATH RecName: Full=ABC transporter G family member 37; Short=ABC transporter ABCG.37; Short=AtABCG37; AltName: Full=Probable pleiotropic drug resistance protein 9 gi|6729499|emb|CAB67655.1| ABC transporter-like protein [Arabidopsis thaliana] gi|28144337|tpg|DAA00877.1| TPA_exp: PDR9 ABC transporter [Arabidopsis thaliana] gi|332645574|gb|AEE79095.1| ABC transporter G family member 37 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/401 (71%), Positives = 347/401 (86%), Gaps = 2/401 (0%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR +A++FQTVVA++TAGSF IL +F GFVI PSMP WLKWGFW +P++YGEIGLS
Sbjct: 674 MFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLS 733
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
+NEFLAPRW +M P N T+G+ IL++RG++++GY++W+SL AL GF +L NI FTLALTF
Sbjct: 734 VNEFLAPRWNQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTF 793
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
LK+ SSR+MIS +K SE++ +E ST V+ + +P+ +E + KMVLPF+PLTV
Sbjct: 794 LKSPTSSRAMISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTEE--EDKMVLPFKPLTVT 851
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQDL Y++D P+EMR++G+ +KKL+LL D+TG+ RPG+LTALMGVSGAGKTTLLDVLAGR
Sbjct: 852 FQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGR 911
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT+G +EG+I+I G+PKVQETFARVSGYCEQTDIHSP ITVEESVI+SAWLRLAPEI++
Sbjct: 912 KTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDAT 971
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK +FV +VLETIELD IKDSLVG+ GV+GLSTEQRKRLTIAVELVANPSIIFMDEPTTG
Sbjct: 972 TKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1031
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKNV DTGRTIVCTIHQPSIDIFEAFDE+
Sbjct: 1032 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDEL 1072
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147780242|emb|CAN65735.1| hypothetical protein VITISV_037751 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 303/402 (75%), Positives = 354/402 (88%), Gaps = 19/402 (4%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFRF ASV +T+VA+ TAGSFAILLVLLFGGF+I +PSMP WLKW FWISP+TYGEIGL+
Sbjct: 656 MFRFFASVSRTMVASATAGSFAILLVLLFGGFIIPQPSMPDWLKWAFWISPMTYGEIGLA 715
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120
+NEFLAPRWQK L TNTT+G+E LE+RGLNFDGY FWISL ALFG ++ NIGFTLAL+F
Sbjct: 716 VNEFLAPRWQKTLSTNTTLGRETLENRGLNFDGYFFWISLAALFGVTIIFNIGFTLALSF 775
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTP-MTNKESYKGKMVLPFEPLTV 179
L+ + ST+G + S++ P T KE+ G+MVLPF+PLTV
Sbjct: 776 LQGR------------------DQSTNGAYEEEESKNPPPKTTKEADIGRMVLPFQPLTV 817
Query: 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239
+FQD++YY+DTP+EMR++GF +KKL+LL+D+TGSLRPGVLTALMGVSGAGKTTL+DVLAG
Sbjct: 818 SFQDVQYYVDTPVEMRQKGFAQKKLQLLHDITGSLRPGVLTALMGVSGAGKTTLMDVLAG 877
Query: 240 RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINS 299
RKT+G++EGEI+IGGYPKVQETFAR+SGYCEQTDIHSPQIT+EESVIFSAWLRL+P+I+S
Sbjct: 878 RKTSGTIEGEIRIGGYPKVQETFARISGYCEQTDIHSPQITIEESVIFSAWLRLSPQIDS 937
Query: 300 KTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359
KTKAEFVNEVLETIELDGIKD+LVG+PGV GLSTEQRKRLTIAVELV+NPSIIFMDEPT+
Sbjct: 938 KTKAEFVNEVLETIELDGIKDALVGMPGVGGLSTEQRKRLTIAVELVSNPSIIFMDEPTS 997
Query: 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
GLDARAAA++MRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE+
Sbjct: 998 GLDARAAAVVMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEL 1039
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 404 | ||||||
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.987 | 0.275 | 0.698 | 4.7e-151 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.982 | 0.280 | 0.678 | 7.3e-146 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.967 | 0.271 | 0.548 | 1e-114 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.957 | 0.273 | 0.550 | 2.5e-113 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.975 | 0.271 | 0.544 | 1.8e-112 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.992 | 0.282 | 0.525 | 5.9e-112 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.980 | 0.272 | 0.535 | 9.7e-112 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.970 | 0.275 | 0.532 | 5.5e-111 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.950 | 0.269 | 0.539 | 1.2e-108 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.819 | 0.225 | 0.582 | 9.1e-97 |
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
Identities = 280/401 (69%), Positives = 340/401 (84%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR +A++FQTVVA++TAGSF IL +F GFVI PSMP WLKWGFW +P++YGEIGLS
Sbjct: 674 MFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLS 733
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISXXXXXXXXXXXNIGFTLALTF 120
+NEFLAPRW +M P N T+G+ IL++RG++++GY++W+S NI FTLALTF
Sbjct: 734 VNEFLAPRWNQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTF 793
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
LK+ SSR+MIS +K SE++ +E ST V+ + +P+ +E + KMVLPF+PLTV
Sbjct: 794 LKSPTSSRAMISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTEE--EDKMVLPFKPLTVT 851
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQDL Y++D P+EMR++G+ +KKL+LL D+TG+ RPG+LTALMGVSGAGKTTLLDVLAGR
Sbjct: 852 FQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGR 911
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT+G +EG+I+I G+PKVQETFARVSGYCEQTDIHSP ITVEESVI+SAWLRLAPEI++
Sbjct: 912 KTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDAT 971
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK +FV +VLETIELD IKDSLVG+ GV+GLSTEQRKRLTIAVELVANPSIIFMDEPTTG
Sbjct: 972 TKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1031
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKNV DTGRTIVCTIHQPSIDIFEAFDE+
Sbjct: 1032 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDEL 1072
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1425 (506.7 bits), Expect = 7.3e-146, P = 7.3e-146
Identities = 272/401 (67%), Positives = 329/401 (82%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
MFR +A++FQT VAAMTAGSF +L+ +F GF I MP WLKWGFW++P++Y EIGLS
Sbjct: 639 MFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLS 698
Query: 61 LNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGYLFWISXXXXXXXXXXXNIGFTLALTF 120
+NEFLAPRWQKM PTN T+G+ ILESRGLN+D Y++W+S N FTLAL+F
Sbjct: 699 VNEFLAPRWQKMQPTNVTLGRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSF 758
Query: 121 LKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVA 180
LK+ SSR MIS +K SE++ ++DS+ + K + + E GKM+LPF+PLT+
Sbjct: 759 LKSPTSSRPMISQDKLSELQGTKDSS---VKKNKPLDSSIKTNED-PGKMILPFKPLTIT 814
Query: 181 FQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
FQDL YY+D P+EM+ +G+ EKKL+LL ++TG+ RPGVLTALMG+SGAGKTTLLDVLAGR
Sbjct: 815 FQDLNYYVDVPVEMKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGR 874
Query: 241 KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300
KT+G +EGEI+I G+ KVQETFARVSGYCEQTDIHSP ITVEES+I+SAWLRL PEIN +
Sbjct: 875 KTSGYIEGEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQ 934
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
TK FV +VLETIEL+ IKD+LVG+ GV+GLSTEQRKRLT+AVELVANPSIIFMDEPTTG
Sbjct: 935 TKIRFVKQVLETIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTG 994
Query: 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
LDARAAAI+MRAVKNV +TGRTIVCTIHQPSI IFEAFDE+
Sbjct: 995 LDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDEL 1035
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 221/403 (54%), Positives = 295/403 (73%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FRF+AS +T+ A T G +L+V L GGF++ + +PVW +W +WISP++Y ++
Sbjct: 670 IFRFIASTCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAIT 729
Query: 61 LNEFLAPRWQKMLPTNTT--IGQEILESRGLNFDGYLFWISXXXXXXXXXXXNIGFTLAL 118
+NE APRW + N+T +G +L + D +WI N FTLAL
Sbjct: 730 VNELFAPRWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLAL 789
Query: 119 TFLKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLT 178
T+L G +++++ E+ ++ G+ G ++ T M + + KG MVLPF PL
Sbjct: 790 TYLDPLGKAQAILPKEE-------DEEAKGKA--GSNKETEMESVSAKKG-MVLPFTPLA 839
Query: 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238
++F D+KY++D P EMRE+G E +L+LL VT + RPGVLTALMGVSGAGKTTL+DVLA
Sbjct: 840 MSFDDVKYFVDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLA 899
Query: 239 GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN 298
GRKT G +EG++++ G+PK QETFAR+SGYCEQTDIHSPQ+TV ES+IFSA+LRLA E++
Sbjct: 900 GRKTGGYIEGDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVS 959
Query: 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358
+ K FV++V+E +EL ++D++VG+PGV GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 960 KEDKLMFVDQVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1019
Query: 359 TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
+GLDARAAAI+MRAV+N VDTGRT+VCTIHQPSIDIFEAFDE+
Sbjct: 1020 SGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1062
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
Identities = 222/403 (55%), Positives = 287/403 (71%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FRF+A+ ++++ A T G+ ILL+ L GGF++ + +P W KW +W+SP+ Y L+
Sbjct: 648 IFRFIAATCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALT 707
Query: 61 LNEFLAPRW--QKMLPTNTTIGQEILESRGLNFDGYLFWISXXXXXXXXXXXNIGFTLAL 118
+NE LAPRW Q +T++G +LE + D +WI NI TLAL
Sbjct: 708 VNEMLAPRWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLAL 767
Query: 119 TFLKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLT 178
TFL ++++S E E R S S I K MVLPF PLT
Sbjct: 768 TFLNPLEKQQAVVSKENTEENRAENGSKSKSI--------------DVKRGMVLPFTPLT 813
Query: 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238
++F ++ YY+D P EM+E+G ++ KL+LL +VTG RPGVLTALMGVSGAGKTTL+DVLA
Sbjct: 814 MSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLA 873
Query: 239 GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN 298
GRKT G +EG+I+I G+PK QETFAR+SGYCEQ DIHSPQ+TV+ES+I+SA+LRL E+
Sbjct: 874 GRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVT 933
Query: 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358
K FV+EV+E +EL+ +KD++VG+PG+ GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 934 KYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPT 993
Query: 359 TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
+GLDARAAAI+MR V+N VDTGRT+VCTIHQPSIDIFEAFDE+
Sbjct: 994 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1036
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 222/408 (54%), Positives = 293/408 (71%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FRF+ ++ +T V A + G+ A+L+V + GGF+ISK +P WL W ++ SP+ YG+ L
Sbjct: 674 LFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALV 733
Query: 61 LNEFLAPRWQKMLPTNTT------IGQEILESRGLNFDGYLFWISXXXXXXXXXXXNIGF 114
+NEFL RW P N T +G+ +L+SRG + Y FWI N +
Sbjct: 734 INEFLDERWGS--PNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCY 791
Query: 115 TLALTFLKTSGSSRSMISLEKFSEM-RVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLP 173
+AL +L G+S++ +E+ + + S T G +V+ S T+ K MVLP
Sbjct: 792 IIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTGGSVVELTS-----TSSHGPKKGMVLP 846
Query: 174 FEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTL 233
F+PL++AF ++ YY+D P EM+ +G +L+LL DV G+ RPGVLTAL+GVSGAGKTTL
Sbjct: 847 FQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTL 906
Query: 234 LDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL 293
+DVLAGRKT G +EG I I GYPK Q TFARVSGYCEQ DIHSP +TV ES+I+SAWLRL
Sbjct: 907 MDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRL 966
Query: 294 APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 353
+ +I++KT+ FV EV+E +EL +++S+VG+PGV+GLSTEQRKRLTIAVELVANPSIIF
Sbjct: 967 SADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIF 1026
Query: 354 MDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
MDEPT+GLDARAAAI+MR V+N VDTGRT+VCTIHQPSIDIFE+FDE+
Sbjct: 1027 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 1074
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| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 213/405 (52%), Positives = 296/405 (73%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FR + S+ + ++ A T GSFA+L+V+ GGF+IS+ S+P W WG+WISP+ Y + S
Sbjct: 636 LFRVMGSLGRHMIVANTFGSFAMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAAS 695
Query: 61 LNEFLAPRWQKMLPTNTT--IGQEILESRGLNFDGYLFWISXXXXXXXXXXXNIGFTLAL 118
+NEFL WQK +T+ +G +L+ R L Y +WI NI FTL L
Sbjct: 696 VNEFLGHNWQKTAGNHTSDSLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFL 755
Query: 119 TFLKTSGSSRSMISLEKFSEMRVSEDSTSGEI-VKGHSRSTPMTNKESYKGK-MVLPFEP 176
L G ++++S E+ E + ++ + + + + + +K + MVLPF+P
Sbjct: 756 AHLNPWGKFQAVVSREELDEREKKRKGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQP 815
Query: 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDV 236
L+++F ++ YY+D PL ++E+G E +L+LL ++TG+ RPGVLTAL+GVSGAGKTTL+DV
Sbjct: 816 LSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDV 875
Query: 237 LAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE 296
LAGRKT G++EG++ I G+PK QETFAR+SGYCEQ D+HSP +TV ES++FSA LRL +
Sbjct: 876 LAGRKTGGTIEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPAD 935
Query: 297 INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356
I+S+T+ FV+EV+E +EL + +LVG+PGV+GLSTEQRKRLTIAVELVANPSI+FMDE
Sbjct: 936 IDSETQRAFVHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDE 995
Query: 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
PT+GLDARAAAI+MR V+N+V+TGRTIVCTIHQPSIDIFE+FDE+
Sbjct: 996 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1040
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| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
Identities = 217/405 (53%), Positives = 292/405 (72%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FRF+ ++ +T V + + G+F +L+V GGF+I+K + W+ W +++SP+ YG+ +
Sbjct: 676 LFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIV 735
Query: 61 LNEFLAPRWQKM-LPTNT---TIGQEILESRGLNFDGYLFWISXXXXXXXXXXXNIGFTL 116
+NEFL RW T T+G+ +L+SRG + Y FWI N+ + L
Sbjct: 736 MNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYIL 795
Query: 117 ALTFLKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEP 176
AL +L G+S++ + E + + T G +V+ +S S NK +G MVLPF+P
Sbjct: 796 ALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSSS----NKGPKRG-MVLPFQP 850
Query: 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDV 236
L++AF ++ YY+D P EM+ +G +L+LL DV G+ RPG+LTAL+GVSGAGKTTL+DV
Sbjct: 851 LSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDV 910
Query: 237 LAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE 296
LAGRKT G +EG I I GYPK Q TFARVSGYCEQ DIHSP +TV ES+I+SAWLRL+ +
Sbjct: 911 LAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTD 970
Query: 297 INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356
I+ KT+ FV EV+E +EL +++S+VG+PGV+GLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 971 IDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1030
Query: 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
PT+GLDARAAAI+MR V+N VDTGRT+VCTIHQPSIDIFE+FDE+
Sbjct: 1031 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDEL 1075
|
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| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1077 (384.2 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 214/402 (53%), Positives = 284/402 (70%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+F+ VA++ + ++ A T G+FA+L+ GG V+S+ + W WG+WISP+ YG+ +
Sbjct: 655 LFKMVAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAIL 714
Query: 61 LNEFLAPRWQKMLPTNT-TIGQEILESRGLNFDGYLFWISXXXXXXXXXXXNIGFTLALT 119
NEF W + + ++ T+G L+SRG Y +WI N GFTLALT
Sbjct: 715 ANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALT 774
Query: 120 FLKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTV 179
FL + G +++I+ E S+ + + S +V+ + NK+ +G MVLPFEP ++
Sbjct: 775 FLNSLGKPQAVIAEEPASDETELQSARSEGVVEAGA------NKK--RG-MVLPFEPHSI 825
Query: 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239
F ++ Y +D P EM E+G E +L LL V G+ RPGVLTALMGVSGAGKTTL+DVLAG
Sbjct: 826 TFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAG 885
Query: 240 RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINS 299
RKT G ++G I I GYPK Q+TFAR+SGYCEQTDIHSP +TV ES+++SAWLRL E++
Sbjct: 886 RKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDK 945
Query: 300 KTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359
+ F+ EV+E +EL ++ +LVG+PG +GLSTEQRKRLTIAVELVANPSIIFMDEPT+
Sbjct: 946 NKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1005
Query: 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
GLDARAAAI+MR V+N VDTGRT+VCTIHQPSIDIFEAFDE+
Sbjct: 1006 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1047
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| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
Identities = 218/404 (53%), Positives = 282/404 (69%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FR +AS+ + +V A T GS AIL+V L GGFVI K + W WGFW+SP++YG+ ++
Sbjct: 662 LFRMMASLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIA 721
Query: 61 LNEFLAPRWQKMLPT---NTTIGQEILESRGLNFDGYLFWISXXXXXXXXXXXNIGFTLA 117
+NEF A RW M P+ +TTIG +L+ R + Y +WI N TLA
Sbjct: 722 VNEFTATRW--MTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLA 779
Query: 118 LTFLKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPL 177
L +L +R+++ + E + D+ +++ S K M+LPF+PL
Sbjct: 780 LAYLNPLRKARAVVLDDPNEETALVADAN--QVI-------------SEKKGMILPFKPL 824
Query: 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVL 237
T+ F ++ YY+D P EMR +G E +L+LL +V+G PGVLTAL+G SGAGKTTL+DVL
Sbjct: 825 TMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVL 884
Query: 238 AGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEI 297
AGRKT G EG+I+I G+PK Q+TFAR+SGY EQ DIHSPQ+TVEES+ FSA LRL EI
Sbjct: 885 AGRKTGGYTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEI 944
Query: 298 NSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357
+ K EFV +V+ +ELD ++ +LVG+PG GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 945 TKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEP 1004
Query: 358 TTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
T+GLDARAAAI+MR V+N VDTGRT+VCTIHQPSIDIFEAFDE+
Sbjct: 1005 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1048
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| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 968 (345.8 bits), Expect = 9.1e-97, P = 9.1e-97
Identities = 202/347 (58%), Positives = 252/347 (72%)
Query: 71 KMLPTNTTI--GQEILESRGLNFDGYLFWISXXXXXXXXXXXNIGFTLALTFLKTSGSSR 128
KM +N+TI G +L + + +WIS NI FTLALT+L G
Sbjct: 743 KMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKA 802
Query: 129 SMISLEKFSEMRVSED------STS-----GEIVKGH-SRSTPM--TNKESYKGKMVLPF 174
++ E+ + +D ST+ GE+ G SR + + K MVLPF
Sbjct: 803 GLLPEEENEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPF 862
Query: 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL 234
PL ++F D+KY++D P EMR++G TE +L+LL VTG+ RPGVLTALMGVSGAGKTTL+
Sbjct: 863 TPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLM 922
Query: 235 DVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA 294
DVLAGRKT G +EG+++I G+PKVQETFAR+SGYCEQTDIHSPQ+TV ES+IFSA+LRL
Sbjct: 923 DVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLP 982
Query: 295 PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354
E+ K FV++V+E +ELD ++DS+VG+PGV GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 983 KEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFM 1042
Query: 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
DEPT+GLDARAAAI+MRAV+N VDTGRT+VCTIHQPSIDIFEAFDE+
Sbjct: 1043 DEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1089
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LFH0 | AB37G_ARATH | No assigned EC number | 0.7132 | 0.9876 | 0.2751 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00080924 | hypothetical protein (1476 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 404 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-177 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-119 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-94 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-72 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-55 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-47 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-35 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-30 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-26 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-26 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 2e-24 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-21 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-21 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-20 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-20 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-18 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-18 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-18 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-17 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-16 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-16 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-16 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-16 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-16 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 7e-16 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-15 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-15 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-15 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-15 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-15 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-15 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-15 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-15 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-14 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-14 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-13 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-13 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 5e-13 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-12 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 7e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-11 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-11 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-11 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 7e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-11 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 9e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-10 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-10 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-10 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-10 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-10 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-10 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-09 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-09 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 7e-09 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-09 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 8e-09 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-08 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-08 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-08 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-08 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-07 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-07 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-07 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-07 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-07 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-07 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-07 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 9e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-06 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-06 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-06 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 7e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 8e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 9e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 4e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-05 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 6e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-05 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 3e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 5e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 9e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.001 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.001 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.001 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.001 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.001 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.002 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.003 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.003 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.004 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.004 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.004 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.004 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 533 bits (1374), Expect = e-177
Identities = 237/425 (55%), Positives = 304/425 (71%), Gaps = 24/425 (5%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FR +ASV +T++ A T G+ +LLV L GGF++ K +P W +W +W+SP++YG L+
Sbjct: 666 IFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALA 725
Query: 61 LNEFLAPRW-QKMLPTNTT-IGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLAL 118
+NE APRW KM N+T +G +L + D +WI +GAL GF +L N+ FTLAL
Sbjct: 726 VNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLAL 785
Query: 119 TFLKTSGSSRSMISLEKFSEMRVSEDSTSGEI----------------------VKGHSR 156
T+L G +++IS E EM EDS + K
Sbjct: 786 TYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDS 845
Query: 157 STPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRP 216
S N + K MVLPF PL ++F D+ Y++D P EM+E+G TE +L+LL +VTG+ RP
Sbjct: 846 SLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP 905
Query: 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS 276
GVLTALMGVSGAGKTTL+DVLAGRKT G +EG+I+I G+PK QETFAR+SGYCEQ DIHS
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336
PQ+TV ES+I+SA+LRL E++ + K FV+EV+E +ELD +KD++VG+PGV GLSTEQR
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025
Query: 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE 396
KRLTIAVELVANPSIIFMDEPT+GLDARAAAI+MR V+N VDTGRT+VCTIHQPSIDIFE
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1085
Query: 397 AFDEV 401
AFDE+
Sbjct: 1086 AFDEL 1090
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 376 bits (968), Expect = e-119
Identities = 149/436 (34%), Positives = 224/436 (51%), Gaps = 48/436 (11%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+FR + +V +T+ AMT + +L + ++ GF I +PSM W KW ++++P+ Y L
Sbjct: 549 LFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608
Query: 61 LNEFLAPRW--QKMLP-----TNTTIGQEILESRGL-------NFDGYL----------F 96
+NEF R+ + +P N + ++ G + D YL
Sbjct: 609 VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHK 668
Query: 97 WISLGALFGFALLLNIGFTLALTFLKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKGHSR 156
W + G + GF + + L F K + ++ + S R K
Sbjct: 669 WRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKR---------AKKAGET 719
Query: 157 STPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLE-------MRERGFTEK----KLR 205
S +NK + VL LT D+ D E R + K K
Sbjct: 720 SA--SNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRV 777
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L +V G ++PG LTALMG SGAGKTTLL+VLA R TTG + G ++ + +F R
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
GY +Q D+H P TV ES+ FSA+LR ++ K E+V EV++ +E++ D++VG+
Sbjct: 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 326 PGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384
PG GL+ EQRKRLTI VELVA P ++F+DEPT+GLD++ A I + ++ + D G+ I+
Sbjct: 898 PGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAIL 956
Query: 385 CTIHQPSIDIFEAFDE 400
CTIHQPS +FE FD
Sbjct: 957 CTIHQPSAILFEEFDR 972
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 7e-94
Identities = 102/226 (45%), Positives = 132/226 (58%), Gaps = 47/226 (20%)
Query: 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLD 235
+ +++L Y + K +LL +++G ++PG LTALMG SGAGKTTLLD
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 236 VLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP 295
VLAGRKT G + GEI I G P + F R +GY EQ D+HSP +TV E++ FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 296 EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
EPT+GLD++AA I+R +K + D+G+ I+CTIHQPS IFE FD +
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRL 179
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 223 bits (572), Expect = 3e-72
Identities = 87/226 (38%), Positives = 134/226 (59%), Gaps = 44/226 (19%)
Query: 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLD 235
+T++F++L + ++ +LL +V+G +PG LTA+MG SGAGK+TLL+
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 236 VLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP 295
LAGR+T + GE+ I G P + +F ++ GY Q DI P +TV E+++F+A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 296 EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
EPT+GLD+ +A +M ++ + DTGRTI+C+IHQPS +IFE FD++
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKL 182
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 2e-55
Identities = 86/207 (41%), Positives = 130/207 (62%), Gaps = 4/207 (1%)
Query: 199 FTEKKLR--LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-MEGEIKIGGY 255
F ++ R LL +V+G +PG L A+MG SGAGKTTL++ LA R G G + + G
Sbjct: 31 FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM 90
Query: 256 PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
P + +S Y +Q D+ P +TV E ++F A LR+ + K K E V+EVL+ + L
Sbjct: 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL 150
Query: 316 DGIKDSLVGIPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
++ +G+PG V GLS +RKRL A EL+ +P ++F DEPT+GLD+ A +++ +K
Sbjct: 151 RKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLK 210
Query: 375 NVVDTGRTIVCTIHQPSIDIFEAFDEV 401
+ G+TI+CTIHQPS ++FE FD++
Sbjct: 211 GLAQKGKTIICTIHQPSSELFELFDKI 237
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 3e-47
Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 7/215 (3%)
Query: 190 TPLEMRERGFTE--KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSM- 246
P K R+L DV+ + G + A++G SG+GKTTLLD ++GR G
Sbjct: 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT 63
Query: 247 EGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFV 306
G+I G P+ + F + Y Q DI P +TV E++ ++A LRL P +S +
Sbjct: 64 SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKR 122
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
E + L + + +G V G+S +R+R++IAV+L+ +P ++ +DEPT+GLD+ A
Sbjct: 123 VEDVL---LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179
Query: 367 AIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
++ + + R ++ TIHQP D+F FD +
Sbjct: 180 LNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRI 214
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-40
Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 12/202 (5%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQET 261
L V+ + PG + L+G +GAGKTTLL +LAG S GEI + GY V+E
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS--GEILVLGYDVVKEP 73
Query: 262 --FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
R GY Q P++TV E++ F A L + ++ + E E+LE L+
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE---ELLELFGLEDKA 130
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
+ V LS ++RL+IA+ L+ +P ++ +DEPT+GLD + I ++ +
Sbjct: 131 NKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 380 GRTIVCTIHQPSIDIFEAFDEV 401
G + + E D V
Sbjct: 186 GGVTILLSTHILEEAEELCDRV 207
|
Length = 293 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-36
Identities = 78/243 (32%), Positives = 134/243 (55%), Gaps = 19/243 (7%)
Query: 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKL-----------------RLLYDVTGSLRPGV 218
P+T+ F D+ Y + M+ +G K++ +L VTG PG
Sbjct: 37 PITLKFMDVCYRVKFE-NMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQ 278
+ A++G SG+GK+TLL+ LAGR + G I ++ R +G+ Q DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR-TGFVTQDDILYPH 154
Query: 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338
+TV E+++F + LRL + + K V+ + L +++++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF 398
++IA E++ NPS++ +DEPT+GLDA AA ++ + ++ G+TIV ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 399 DEV 401
D V
Sbjct: 275 DSV 277
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 4e-35
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 35/212 (16%)
Query: 194 MRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKI 252
G K+ +L D +G ++PG + ++G G+G +TLL LA R + S+EG+I
Sbjct: 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69
Query: 253 GGYP--KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
G P + E + Y + D+H P +TV E++ F+ + NE
Sbjct: 70 NGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------GNEF- 115
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
V G+S +RKR++IA LV+ S++ D T GLD+ A I+
Sbjct: 116 -----------------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL 158
Query: 371 RAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEV 401
+ ++ + D T +++Q S +I++ FD+V
Sbjct: 159 KCIRTMADVLKTTTFVSLYQASDEIYDLFDKV 190
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 5e-30
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFA--R 264
D++ ++ G + L+G +GAGKTT L +L G R T+G I GY + A +
Sbjct: 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQ 75
Query: 265 VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324
GYC Q D ++TV E + F A L+ + E V +L + L +
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR 132
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384
LS +++L++A+ L+ PS++ +DEPT+GLD + I + V GR+I+
Sbjct: 133 -----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSII 186
Query: 385 CTIH 388
T H
Sbjct: 187 LTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-29
Identities = 71/260 (27%), Positives = 121/260 (46%), Gaps = 31/260 (11%)
Query: 172 LPFEPLTVAFQDLKYY------------IDTPLEMRERGFTE-------KKLRLLYDVTG 212
L VA+++L Y + L++ RGF + K +L + G
Sbjct: 23 YKPYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDG 82
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKIGGYPK--VQETFARVSG 267
++PG LT ++G G+G +TLL +A T G +EG I G +++ +
Sbjct: 83 LIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGITPEEIKKHYRGDVV 141
Query: 268 YCEQTDIHSPQITVEESVIFSAWLRL-APEINSKTKAEFVNEV----LETIELDGIKDSL 322
Y +TD+H P +TV E++ F+A + + ++ E+ + + T L +++
Sbjct: 142 YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTK 201
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGR 381
VG V G+S +RKR++IA + I D T GLD+ A +RA+K +
Sbjct: 202 VGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDT 261
Query: 382 TIVCTIHQPSIDIFEAFDEV 401
T + I+Q S D +E FD+V
Sbjct: 262 TPLVAIYQCSQDAYELFDKV 281
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-28
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 19/201 (9%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFAR 264
L DV+ ++PG A++G +GAGK+TLL + G + T G I++ G P +++ R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKP-LEKERKR 69
Query: 265 VSGYCEQT---DIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKD 320
+ GY Q D P I+V + V+ + SK V+E LE + L + D
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD 127
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
+G LS Q++R+ +A LV +P ++ +DEP G+D + I ++ + G
Sbjct: 128 RQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 381 RTIVCTIHQPSIDIFEAFDEV 401
TI+ H + + E FD V
Sbjct: 183 MTILVVTHDLGL-VLEYFDRV 202
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 8e-27
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 23/204 (11%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQET---F 262
L D++ +++ G ++G +G+GK+TLL +L G G GE+ + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 263 ARVSGYCEQTDIHSP--QI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG 317
R G Q +P Q TVEE V F PE + + V E LE + L+G
Sbjct: 74 RRKVGLVFQ----NPDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
++D LS Q++R+ IA L +P I+ +DEPT GLD ++ +K +
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 378 DTGRTIVCTIHQPSIDIFEAFDEV 401
G+TI+ H + E D V
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRV 204
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-26
Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 15/202 (7%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYPKVQETFA 263
+L D++ S+ G +TAL+G +GAGK+TLL + G K + GEIKI G P +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 264 RVSGYCEQTDIHSPQ--ITVEESVIFSAWLR--LAPEINSKTKAEFVNEVLETIELDGIK 319
GY Q ITV++ V+ + + +N K K + V+E LE + ++ ++
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMEDLR 133
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
D +G LS Q++R+ +A L NP ++ +DEP TG+D I +K +
Sbjct: 134 DRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188
Query: 380 GRTIVCTIHQPSIDIFEAFDEV 401
G+T++ H + + FD V
Sbjct: 189 GKTVLMVTHDLGL-VMAYFDRV 209
|
Length = 254 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 9e-26
Identities = 63/163 (38%), Positives = 83/163 (50%), Gaps = 13/163 (7%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP--KVQ 259
K R L V+ +L PG+ L+G +GAGKTTL+ +LA S G I+I G K
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
+ R GY Q P TV E + + AWL+ I SK V+EVLE + L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+G LS R+R+ IA LV +PSI+ +DEPT GLD
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-24
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 69 WQKMLP-TNTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSS 127
W K +N T+G+ +L+SRGL + Y +WI +GAL GF +L NI FTLALT+L G S
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 128 RSMIS 132
++++S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-24
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE 260
+K +L D++ L G + AL G +GAGKTTL +LAG G I + G P +
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG--LIKESSGSILLNGKPIKAK 67
Query: 261 TFARVSGYCEQTDIHSPQI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG 317
+ GY Q + Q+ +V E ++ L+ E VL+ ++L
Sbjct: 68 ERRKSIGYVMQDVDY--QLFTDSVREELLLG--LKELDA-----GNEQAETVLKDLDLYA 118
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
+K+ P LS Q++RL IA L++ ++ DEPT+GLD + + ++ +
Sbjct: 119 LKERH---P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173
Query: 378 DTGRTIVCTIH 388
G+ ++ H
Sbjct: 174 AQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 1e-21
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 14/205 (6%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK 251
LE+ F +L D++ S+ G +T ++G +G+GK+TLL LAG GE+
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVL 60
Query: 252 IGG---YPKVQETFARVSGYCEQTDIHSPQITVEESVIFS--AWLRLAPEINSKTKAEFV 306
+ G + A+ Y Q+ +TV E V+ L L SK E V
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR-PSKEDEEIV 119
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
E LE + L+ + D V+ LS +R+R+ IA L I+ +DEPT+ LD
Sbjct: 120 EEALELLGLEHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 367 AIIMRAVKNVVDT-GRTIVCTIHQP 390
++ ++++ G T+V +H
Sbjct: 175 IEVLELLRDLNREKGLTVVMVLHDL 199
|
Length = 258 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 7e-21
Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 36/238 (15%)
Query: 199 FTEK-KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGGYP 256
+K KL +L D +G ++P +T L+G +GKTTLL LAG+ + + GEI GY
Sbjct: 172 LAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGY- 230
Query: 257 KVQETFAR-VSGYCEQTDIHSPQITVEESVIFSAWLR-------LAPEINSKTK------ 302
++ E R S Y Q D+H +TV+E++ FSA + L E+ + K
Sbjct: 231 RLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFP 290
Query: 303 -AE-----------------FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVE 344
AE + L+ + LD KD++VG + G+S Q+KR+T
Sbjct: 291 EAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEM 350
Query: 345 LVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEV 401
+V +FMDE +TGLD+ I++ ++ +V T T++ ++ QP+ + F+ FD++
Sbjct: 351 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDI 408
|
Length = 1470 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 2e-20
Identities = 68/293 (23%), Positives = 130/293 (44%), Gaps = 50/293 (17%)
Query: 98 ISLGAL-FGFALLL--NIGFTLALTFLKTSGSSRSMISLEKFSEMR-------VSEDSTS 147
I+L A+ GF LL ++ L L +++ E F +R + +
Sbjct: 238 IALVAVYIGFRLLGEGDLTLFAGLFVL--------ILAPEFFQPLRDLGSFFHAAAAGEA 289
Query: 148 G-EIVKGHSRSTPMTNKESYKGKMVLPFEPLTVAFQDLKY-YIDTPLEMRERGFTEKKLR 205
+ + +P+ S + V P+ ++ ++L + Y
Sbjct: 290 AADKLFTLL-ESPVATPGSGEKAEVANEPPIEISLENLSFRY-------------PDGKP 335
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
L D+ +++ G LTAL+G SGAGK+TLL++L G +GEI++ G +
Sbjct: 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT--QGEIRVNGID--LRDLSPE 391
Query: 266 SGYCEQTDI-HSPQI---TVEESVIFSAWLRLAPEINSKTKAEFVNEV--LETIELDGIK 319
+ + + + +P + T+ E+++ P+ + + +++ LE +
Sbjct: 392 AWRKQISWVSQNPYLFAGTIRENILL-----ARPDASDEEIIAALDQAGLLEFVPKPDGL 446
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
D+++G G GLS Q +RL +A L++ S++ +DEPT LDA II++A
Sbjct: 447 DTVIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA 498
|
Length = 559 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 6e-20
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 18/200 (9%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSME-GEIKIGGYPK 257
+K++ L V+ S+ G A++G SG+GK+TLL++L G R T+G + I +
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSE 73
Query: 258 VQETFARVS--GYCEQTDIHS--PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 313
+ R G+ Q+ + P +T E+V L + K E E +
Sbjct: 74 KELAAFRRRHIGFVFQS--FNLLPDLTALENV------ELPLLLAGVPKKERRERAEELL 125
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
E G+ D L P + LS Q++R+ IA L +P II DEPT LD+ +M +
Sbjct: 126 ERVGLGDRLNHYP--SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183
Query: 374 KNVV-DTGRTIVCTIHQPSI 392
+ + + G TIV H P +
Sbjct: 184 RELNKEAGTTIVVVTHDPEL 203
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 5e-19
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 20/204 (9%)
Query: 191 PLEMR--ERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG 248
P++ R E+ + +K + + ++ ++ G L+G +GAGKTT L +L G T G
Sbjct: 7 PIDFRNVEKRYGDKLV--VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG--LTHPDAG 62
Query: 249 EIKIGGYP---KVQETFARVSGYCEQTDIHSPQITVEESV-IFSAWLRLAPEINSKTKAE 304
I + G P + + RV G Q D P TV E++ +F + L+ +
Sbjct: 63 SISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFGRYFGLS----AAAARA 117
Query: 305 FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
V +LE +L+ D+ VG LS ++RLT+A LV +P ++ +DEPTTGLD +
Sbjct: 118 LVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ 172
Query: 365 AAAIIMRAVKNVVDTGRTIVCTIH 388
A ++ +++++ G+TI+ T H
Sbjct: 173 ARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 6e-19
Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 32/194 (16%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGS--MEGEIKIGGYPKVQ----- 259
DV+ S+RPG + L+G +GAGKTTL ++++G R T+GS +GE I G P +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHEIARLG 76
Query: 260 --ETFARVSGYCEQTDIHSPQITVEESVI-------FSAWLRLAPEINSKTKAEFVNEVL 310
TF + P++TV E+V+ S L + E E+L
Sbjct: 77 IGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL 128
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E + L + D G LS Q++RL IA L +P ++ +DEP GL+ +
Sbjct: 129 ERVGLADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183
Query: 371 RAVKNVVDTGRTIV 384
++ + + G T++
Sbjct: 184 ELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 82.4 bits (205), Expect = 1e-18
Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 52/191 (27%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYP--K 257
K L D++ ++ G + L+G +GAGKTTL+ ++ G + GEIK+ G K
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKK 66
Query: 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG 317
E R GY + +TV E++ S
Sbjct: 67 EPEEVKRRIGYLPEEPSLYENLTVRENLKLSG---------------------------- 98
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
G ++RL +A L+ +P ++ +DEPT+GLD + ++ +
Sbjct: 99 ------------G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142
Query: 378 DTGRTIVCTIH 388
G+TI+ + H
Sbjct: 143 KEGKTILLSSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 2e-18
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 50/191 (26%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYPKVQETFA 263
+L D++ S+ G + ++G +GAGK+TLL LAG K + GEI + G
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDG--------- 60
Query: 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAE---FVNEVLETIELDGIKD 320
D+ S ++ K A +V + LE + L + D
Sbjct: 61 --------KDLAS--------------------LSPKELARKIAYVPQALELLGLAHLAD 92
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-T 379
N LS +R+R+ +A L P I+ +DEPT+ LD ++ ++ +
Sbjct: 93 R-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARER 147
Query: 380 GRTIVCTIHQP 390
G+T+V +H
Sbjct: 148 GKTVVMVLHDL 158
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-18
Identities = 54/189 (28%), Positives = 98/189 (51%), Gaps = 14/189 (7%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF 262
K++ + DV+ G +T L+G +GAGKTTLL ++A S G++ I G V++
Sbjct: 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS--GKVTIDGVDTVRDPS 71
Query: 263 A---RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
++ + +++ ++T E++ + A RL + KA + E+ + ++L
Sbjct: 72 FVRRKIGVLFGERGLYA-RLTARENLKYFA--RLNGLSRKEIKAR-IAELSKRLQLLEYL 127
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
D VG ST ++++ IA LV +PSI+ +DEPT+GLD R +K + +
Sbjct: 128 DRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182
Query: 380 GRTIVCTIH 388
GR ++ + H
Sbjct: 183 GRAVIFSSH 191
|
Length = 245 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-18
Identities = 49/200 (24%), Positives = 75/200 (37%), Gaps = 58/200 (29%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYP-----KVQ 259
L DV+ ++ G + AL+G SG+GK+TLL +AG G I I G
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD----SGSILIDGEDLTDLEDEL 71
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
R G Q P +TV E++
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIAL-------------------------------- 99
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
GLS Q++R+ +A L +P ++ +DEPT+ LD + +K++
Sbjct: 100 ----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQ 149
Query: 380 -GRTIVCTIHQPSIDIFEAF 398
G T+V H D+ EA
Sbjct: 150 LGITVVLVTH----DLDEAA 165
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 5e-18
Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 30/203 (14%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETF 262
R L D++ ++ PG AL+G SG GKTTLL ++AG R GEI I G
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD----SGEILIDG-----RDV 64
Query: 263 ARVS------GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 316
V G Q P +TV E++ F LR P+ V E+LE + L+
Sbjct: 65 TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK---AEIRARVRELLELVGLE 121
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
G+ + + LS Q++R+ +A L PS++ +DEP + LDA+ + +K +
Sbjct: 122 GLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKEL 176
Query: 377 -VDTGRTIVCTIHQPSIDIFEAF 398
+ G T + H D EA
Sbjct: 177 QRELGITTIYVTH----DQEEAL 195
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 1e-17
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 25/207 (12%)
Query: 198 GFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGY 255
G +K+ L DV + G A++G SG+GK+TLL++L G + T GE+ I G
Sbjct: 12 GLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT----SGEVLINGK 67
Query: 256 P-------KVQETFARVSGYCEQTDIHS--PQITVEESVIFSAWLRLAPEINSKTKAEFV 306
++ + + G+ Q + P +TV E+V + K AE +
Sbjct: 68 DLTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEEL 125
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
EVL G++D L+ + LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 126 LEVL------GLEDRLLKKK-PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178
Query: 367 AIIMRAVKNVV-DTGRTIVCTIHQPSI 392
++ ++ + + G+TI+ H P +
Sbjct: 179 KEVLELLRELNKERGKTIIMVTHDPEL 205
|
Length = 226 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-17
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYPKVQET--FARV 265
V+ +R G + L+G +GAGKTT + +L K T G + G+ V+E R
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVRRR 74
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
G Q ++T E++ A L P + E ++E+L+ + L D LV
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVP---GAERRERIDELLDFVGLLEAADRLVKT 131
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIV 384
S R+RL IA LV P ++F+DEPT GLD + A + ++ + + G TI+
Sbjct: 132 -----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTIL 186
Query: 385 CTIH 388
T H
Sbjct: 187 LTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-17
Identities = 54/192 (28%), Positives = 81/192 (42%), Gaps = 16/192 (8%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG-----YPKVQET 261
L + S+ G L+G SGAGK+TLL ++ + S G I++ G
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS--GTIRVNGQDVSDLRGRAIP 74
Query: 262 FARVS-GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
+ R G Q P V E+V F A E+ E V +EL G+
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAF------ALEVTGVPPREIRKRVPAALELVGLSH 128
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
+P LS +++R+ IA +V +P+I+ DEPT LD IM +K + G
Sbjct: 129 KHRALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 381 RTIVCTIHQPSI 392
T+V H +
Sbjct: 187 TTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-17
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 29/207 (14%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQET--- 261
L DV+ + G L+G +G+GK+TLL +L G + T+G E+ + G E
Sbjct: 20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG----EVLVDGLDTSSEKSLL 75
Query: 262 -FARVSGYCEQTDIHSP--QI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
+ G Q +P Q+ TVE+ V F P + E V E LE + L
Sbjct: 76 ELRQKVGLVFQ----NPDDQLFGPTVEDEVAFGLENLGLPR---EEIEERVAEALELVGL 128
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
+ + D LS Q++R+ IA L P I+ +DEPT GLD + ++ +K
Sbjct: 129 EELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKK 183
Query: 376 VV-DTGRTIVCTIHQPSIDIFEAFDEV 401
+ + G+TI+ H + E D V
Sbjct: 184 LKEEGGKTIIIVTHDLE-LVLEYADRV 209
|
Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-17
Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 20/186 (10%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFA--R 264
V+ +++PG +T L+G +GAGKTT L +LAG G + G+ V+E R
Sbjct: 23 GVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKEPAEARR 78
Query: 265 VSGYCEQTDIHSPQITVEESVIFSAWLR-LAP-EINSKTKAEFVNEVLETIELDGIKDSL 322
G+ + ++T E++ + A L L E+ ++ + E+ + + ++ + D
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR-----LEELADRLGMEELLDRR 133
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT 382
VG G ST R+++ IA LV +P ++ +DEPTTGLD A + ++ + G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 383 IVCTIH 388
I+ + H
Sbjct: 189 ILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-17
Identities = 51/210 (24%), Positives = 79/210 (37%), Gaps = 47/210 (22%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF 262
L D++ + G +TAL+G SG GK+TLL +L + I
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNR------LNDLIPG---------- 55
Query: 263 ARVSG--YCEQTDIHSPQI---------------------TVEESVIFSAWLRLAPEINS 299
A G + DI+ + ++ ++V + L
Sbjct: 56 APDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHG--IKLK 113
Query: 300 KTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358
+ E V E L L +KD L GLS Q++RL +A L P ++ +DEPT
Sbjct: 114 EELDERVEEALRKAALWDEVKDRLHA----LGLSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 359 TGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
+ LD + A I + + TIV H
Sbjct: 170 SALDPISTAKIEELIAELKKE-YTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 6e-17
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 17/200 (8%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGE 249
L+ + T K R+L D++ ++ G + +G +GAGKTT + ++ G + +G E
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG--EIT 58
Query: 250 IKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEV 309
Y K E R+ E + P +T E++ A L + + ++EV
Sbjct: 59 FDGKSYQKNIEALRRIGALIEAPGFY-PNLTARENLRLLARLLGIRK-------KRIDEV 110
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
L+ + L V G S ++RL IA+ L+ NP ++ +DEPT GLD +
Sbjct: 111 LDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL 165
Query: 370 MRAVKNVVDTGRTIVCTIHQ 389
+ ++ D G T++ + H
Sbjct: 166 RELILSLRDQGITVLISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 6e-17
Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 12/182 (6%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE--TFARVS 266
V +R G + +G +GAGKTT + +L S G ++ GY V+E R
Sbjct: 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS--GTARVAGYDVVREPRKVRRSI 68
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
G Q +T E++ L P+ ++ +AE E+LE EL D VG
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAE---ELLELFELGEAADRPVG-- 123
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
S R+RL IA L+ P ++F+DEPTTGLD R I ++ + + G TI+ T
Sbjct: 124 ---TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT 180
Query: 387 IH 388
H
Sbjct: 181 TH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 7e-17
Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 27/202 (13%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PKVQE 260
L DV+ S+ PG AL+G SGAGK+TLL L G G + I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTSGSVLIDGTDINKLKGKALR 74
Query: 261 TFARVSGYCEQTDIHSPQITVEESV---------IFSAWLRLAPEINSKTKAEFVNEVLE 311
R G Q +++V E+V + + L P+ K +A L
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-KQRA------LA 127
Query: 312 TIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR 371
+E G+ D + LS Q++R+ IA L+ P +I DEP LD ++ +M
Sbjct: 128 ALERVGLLDKA--YQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 372 AVKNVVDT-GRTIVCTIHQPSI 392
+K + G T++ ++HQ +
Sbjct: 186 LLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-16
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFARVSGYCE 270
+L G L G +G+GKTTLL ++AG G IK+ G A Y
Sbjct: 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA----AGTIKLDGGDIDDPDVAEACHYLG 79
Query: 271 QTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330
+ P +TV E++ F W + + LE + L + +P
Sbjct: 80 HRNAMKPALTVAENLEF--WAAFL-----GGEELDIAAALEAVGLAPLAH----LPF-GY 127
Query: 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390
LS Q++R+ +A LV+N I +DEPT LDA A A+ ++ + G ++ H P
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP 187
Query: 391 SIDIFEA 397
+ + A
Sbjct: 188 -LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 2e-16
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 54/187 (28%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYPK---VQETFAR 264
DV+ +++PG A++G SG+GK+TLL +L T GEI I G E+ +
Sbjct: 20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRK 76
Query: 265 VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324
Y Q + +FS I++
Sbjct: 77 NIAYVPQ-----------DPFLFS---------------------------GTIRE---- 94
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384
N LS QR+R+ IA L+ +P I+ +DE T+ LD A+I+ A++ + G+T++
Sbjct: 95 ----NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVI 149
Query: 385 CTIHQPS 391
H+ S
Sbjct: 150 VIAHRLS 156
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-16
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 20/204 (9%)
Query: 198 GFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI----- 252
G + ++L+D+ + PG + L G SG+GKTTLL ++ G ++ EG +K+
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQEL 69
Query: 253 GGYPKVQETFARVS-GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE 311
G + + R + GY Q +T ++V + L L P ++ + E +LE
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLE 127
Query: 312 TIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA---RAAAI 368
+ G+ D L P + LS Q++R+ IA LV P ++ DEPT LD+ R
Sbjct: 128 AV---GLGDHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
Query: 369 IMRAVKNVVDTGRTIVCTIHQPSI 392
+M+ K + G TI+ H I
Sbjct: 183 LMQ--KLAREQGCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 2e-16
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 312 TIELDGIKDSLVGIPG-------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
I +DG + + + V LS QR+R+ +A L+ NP ++ +DEPT+GLD
Sbjct: 55 EILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114
Query: 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
+ ++ ++ + + GRT++ H P A D V
Sbjct: 115 SRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRV 150
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-16
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 19/203 (9%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGE 249
LE + L D++ +L G + G +GAGKTTLL +LAG R GE
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD----AGE 58
Query: 250 IKIGGYP--KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVN 307
+ G P V+E++ + Y ++T E++ F W R + A +
Sbjct: 59 VYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF--WQR----FHGSGNAATIW 112
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367
E L + L G++D VG LS Q++R+ +A ++ + +DEP T LD A
Sbjct: 113 EALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167
Query: 368 IIMRAVKNVVDTGRTIVCTIHQP 390
++ + G ++ T HQP
Sbjct: 168 LLTALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 4e-16
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 16/186 (8%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA---RVSGYC 269
++ PG AL+G SGAGK+TLL++L G EG I + G P +
Sbjct: 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQIAWV 401
Query: 270 EQTDIHSPQI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
Q P + T+ E++ + EI + ++E + + G+ D+ +G
Sbjct: 402 PQH----PFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALP-QGL-DTPIG-E 454
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
G GLS Q +RL +A + + ++ +DEPT LDA A ++ A++ + GRT++
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLV 513
Query: 387 IHQPSI 392
H+ ++
Sbjct: 514 THRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 5e-16
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PKVQE 260
L V +R G + A++G SG+GK+TLL ++ G S GE+ I G
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS--GEVLIDGEDISGLSEAELY 73
Query: 261 TFARVSGYCEQ-----TDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
R G Q + TV E+V F LR ++ + E V E LE + L
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLREHTRLSEEEIREIVLEKLEAVGL 126
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
G +D LS +KR+ +A L +P ++ DEPT GLD A+ +I +++
Sbjct: 127 RGAEDLYPA-----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRS 181
Query: 376 VVDT-GRTIVCTIHQ 389
+ G T + H
Sbjct: 182 LKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 6e-16
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
Query: 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG--YPKVQETFAR-----VSGYC 269
G + A++G SG+GK+TLL+++ + S G++ + G P + A GY
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDS--GQVYLNGQETPPLNSKKASKFRREKLGYL 81
Query: 270 EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329
Q TVEE+ L L + +K E + E +E G+ L +
Sbjct: 82 FQNFALIENETVEEN------LDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK--IY 133
Query: 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389
LS +++R+ +A ++ P +I DEPT LD + ++ + + D G+TI+ H
Sbjct: 134 ELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD 193
Query: 390 PSIDIFEAFDEV 401
P + + D V
Sbjct: 194 PE--VAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 7e-16
Identities = 67/198 (33%), Positives = 98/198 (49%), Gaps = 28/198 (14%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP---KVQET 261
+L V+ L PG A++G SG+GK+TLL LAG ++GE+ + G P Q+
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDE 406
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIEL----- 315
R C Q D H TV E+ LRLA P+ T E + LE + L
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVREN------LRLARPDA---TDEE-LWAALERVGLADWLR 455
Query: 316 ---DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
DG+ D+++G G LS +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 456 ALPDGL-DTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 373 VKNVVDTGRTIVCTIHQP 390
+ +GRT+V H
Sbjct: 514 L-LAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 7e-16
Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETF 262
+L + + G + AL+G +GAGK+TLL L G R +G++ + + Y +
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLE 65
Query: 263 ARVS-GYCEQT---DIHSPQITVEESVIFSAW-LRLAP-EINSKTKAEFVNEVLETIELD 316
R G Q + + V++ V F L L+ E+ + V E L +
Sbjct: 66 RRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERR-----VREALTAVGAS 118
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
G+++ + LS ++KR+ IA + P ++ +DEPT GLD ++ ++ +
Sbjct: 119 GLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173
Query: 377 VDTGRTIVCTIH 388
G T+V + H
Sbjct: 174 RAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-15
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 16/201 (7%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK 251
L R + + L ++ +L G + G +G GKTTLL +LAG GE++
Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG--LLRPDSGEVR 58
Query: 252 IGGYP--KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEV 309
G + ++ R Y P+++ E++ F W + + +
Sbjct: 59 WNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHF--WAAI-----HGGAQRTIEDA 111
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
L + L G +D LS Q++RL +A ++ + +DEPTT LD A++
Sbjct: 112 LAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 370 MRAVKNVVDTGRTIVCTIHQP 390
++ + G ++ T HQ
Sbjct: 167 AGLLRAHLARGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 21/164 (12%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFAR 264
L DV + G L+G SG GK+TLL ++AG T GEI I G T
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT----SGEILIDGRDV---TDLP 71
Query: 265 VS----GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
Q P +TV E++ F L+L ++ V EV + + L+ + +
Sbjct: 72 PEKRGIAMVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR-VKEVAKLLGLEHLLN 128
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
LS QR+R+ +A LV P + +DEP + LDA+
Sbjct: 129 RKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 1e-15
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 23/196 (11%)
Query: 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGGYP----KV 258
L + DV+ +RPG + L+G +GAGKTTL +++ G K + G + G
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLPP 73
Query: 259 QETFARVSGYCEQTDIHSPQITVEESVI--------FSAWLRLAPEINSKTKA-EFVNEV 309
Q P +TV E+V S L + +A E E+
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
LE + L + D G LS Q++RL IA L P ++ +DEP GL+ +
Sbjct: 134 LEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 370 MRAVKNVVDT-GRTIV 384
++ + D G TI+
Sbjct: 189 AELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-15
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG-----YPKVQET 261
L+DV+ +R G L G SGAGKTTLL +L G T G+++I G Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLP 75
Query: 262 FARVS-GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
R G Q P TV E+V L E+ K + E V + G++
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVA------LPLEVRGKKEREIQRRVGAALRQVGLEH 129
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
P LS +++R+ IA +V +P ++ DEPT LD + I+ +K + G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 381 RTIVCTIHQPSI 392
T++ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-15
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE---T 261
R L DV+ ++RPG AL+G +GAGK+TL +L + EG+I + G+ +
Sbjct: 15 RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAA 72
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
AR+ G Q ++V +++ + A L ++ + E+L + L D
Sbjct: 73 LARL-GVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGLAERADD 128
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTG 380
V L+ R+R+ IA L+ P+++ +DEPT GLD + A I V+ + D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 381 RTIVCTIH 388
+++ H
Sbjct: 184 LSVLWATH 191
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-15
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 15/179 (8%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR--KTTGSME-- 247
+E++ ++L D++ + PG A++G +GAGKTTLL +L G ++G +
Sbjct: 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLL 91
Query: 248 GEI--KIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVI--FSAWLRLAPEINSKTKA 303
G K ++++ VS E + + TV + V+ F A + + E +
Sbjct: 92 GRRFGKGETIFELRKRIGLVSS--ELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDL 149
Query: 304 EFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+LE + + D G LS +++R+ IA LV +P ++ +DEP GLD
Sbjct: 150 AAAQWLLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLD 203
|
Length = 257 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-15
Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 11/159 (6%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA-RV 265
L DV + G L AL+G SG+GK+TLL ++AG + S G I++ G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS--GRIRLNGQDATRVHARDRK 73
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
G+ Q +TV +++ F +R P+ K + V E+LE ++L+G+ D
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDRY--- 127
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
P N LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 34/202 (16%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D++ + PG A++G SG+GK+TLL +L G +G I + G
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDL-------- 537
Query: 266 SGYCEQTDIHSPQITV--EESVIFSAWLR----LAPEINSKTKAEFVNEVLETIELDGIK 319
+ + Q+ ++ +FS +R L + E++E +L G
Sbjct: 538 -NDIDLASLRR-QVGYVLQDPFLFSGSIRENIALGNPEATD------EEIIEAAQLAGAH 589
Query: 320 DSLVGIP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
+ + +P G LS QR+RL +A L++ P I+ +DE T+ LD AII+
Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649
Query: 371 RAVKNVVDTGRTIVCTIHQPSI 392
+ + + GRT++ H+ S
Sbjct: 650 QNLLQ-ILQGRTVIIIAHRLST 670
|
Length = 709 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-15
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 38/203 (18%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFA 263
L +V+ ++R G A++G G+GK+TLL +LAG G + + G Q
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLR 77
Query: 264 RVSGYCEQTDIHSPQITVEESVIFSAWLR-----LAPEINSKTKAEFVNEVLETIELDGI 318
R GY Q + +F LR AP + +L EL G+
Sbjct: 78 RNIGYVPQ-----------DVTLFYGTLRDNITLGAPLADD-------ERILRAAELAGV 119
Query: 319 KDSLVGIP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
D + P GLS QR+ + +A L+ +P I+ +DEPT+ +D + +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 370 MRAVKNVVDTGRTIVCTIHQPSI 392
++ ++ +T++ H+PS+
Sbjct: 180 KERLRQLL-GDKTLIIITHRPSL 201
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 3e-15
Identities = 60/198 (30%), Positives = 93/198 (46%), Gaps = 21/198 (10%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQE 260
+ +L D+ S+ G A++G SG GK+TLL ++AG + T GE+ + G P V
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT----SGEVLLDGRP-VTG 69
Query: 261 TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
+ GY Q D P +TV ++V L E+ K+KAE E +EL G+
Sbjct: 70 PGPDI-GYVFQEDALLPWLTVLDNV------ALGLELRGKSKAEARERAKELLELVGLAG 122
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DT 379
P LS R+R+ IA L P ++ +DEP LDA + + + +T
Sbjct: 123 FEDKYPHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET 180
Query: 380 GRTIVCTIHQPSIDIFEA 397
+T++ H D+ EA
Sbjct: 181 RKTVLLVTH----DVDEA 194
|
Length = 248 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-15
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGY 268
D++ ++ G L+G SG GKTTLL ++AG + S GEI + G E V
Sbjct: 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS--GEILLDG-----EDITDVPPE 75
Query: 269 CEQTDIHS--------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
+ I P +TVEE+V F L++ ++ V E LE + L+G D
Sbjct: 76 --KRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFAD 131
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
+ LS Q++R+ +A LV P ++ +DEP + LDA+ + + +K
Sbjct: 132 RKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKE 181
|
Length = 352 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 4e-15
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFAR 264
L D++ S+ G AL+G SG GK+TLL ++AG R T GE+ + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGEPVTGPGPDR 75
Query: 265 VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324
GY Q D P +TV ++V E+ KAE E +EL G+
Sbjct: 76 --GYVFQQDALLPWLTVLDNVAL------GLELQGVPKAEARERAEELLELVGLSGFENA 127
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTI 383
P LS R+R+ +A L +P ++ +DEP + LDA + + ++ +TG+T+
Sbjct: 128 YPH--QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTV 185
Query: 384 VCTIHQPSIDIFEAF 398
+ H DI EA
Sbjct: 186 LLVTH----DIDEAV 196
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 5e-15
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 49/189 (25%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L +V+ S+ PG A++G SG+GK+TL ++ G S G +++ G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS--GRVRLDG----------- 63
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DG-IKDSLV 323
DI + + V + + EL G I +
Sbjct: 64 ------ADISQ--------------------WDPNELGDHVGYLPQDDELFSGSIAE--- 94
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTI 383
N LS QR+RL +A L NP I+ +DEP + LD + +A+ + G T
Sbjct: 95 -----NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 384 VCTIHQPSI 392
+ H+P
Sbjct: 150 IVIAHRPET 158
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 6e-15
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 16/190 (8%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ET 261
+L DV+ + G +T+++G +GAGK+TLL +++ + GEI I G +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSGEITIDGLELTSTPSKE 72
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFS--AWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
A+ +Q + + ++TV + V F + + + +NE +E + L+ +
Sbjct: 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI---INEAIEYLHLEDLS 129
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
D + + LS QR+R IA+ L + + +DEP LD + + IM+ ++ + D
Sbjct: 130 DRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE 184
Query: 380 -GRTIVCTIH 388
G+TIV +H
Sbjct: 185 LGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 6e-15
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS---GYCE 270
+RPG L+GV+GAGKTT +L G T S G+ + G + + V GYC
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS--GDATVAG-KSILTNISDVHQNMGYCP 2018
Query: 271 QTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330
Q D +T E + A LR P ++ + N ++++ L D L G
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVP---AEEIEKVANWSIQSLGLSLYADRLAGT----- 2070
Query: 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
S +++L+ A+ L+ P ++ +DEPTTG+D +A ++ + +++ GR +V T H
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-15
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 21/192 (10%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG---YPKVQETF 262
++ V + PG LT L+G +G+GK+TLL +LAG G + + G + +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG--ALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 263 ARVSGYCEQTDIHSPQITVEESVIF------SAWLRLAPEINSKTKAEFVNEVLETIELD 316
AR EQ + +TV + V S W +P A V+ L EL
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPH-----DAAVVDRALARTELS 128
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
+ D ++ LS +R+R+ +A L P ++ +DEPT LD RA + V+ +
Sbjct: 129 HLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 377 VDTGRTIVCTIH 388
TG T+V +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 7e-15
Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 19/167 (11%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG----YPKVQE 260
L DV+ + G L AL+G SG+GKTTLL ++AG + S G I GG VQE
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS--GTILFGGEDATDVPVQE 73
Query: 261 TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEF---VNEVLETIELDG 317
R G+ Q +TV ++V F LR+ P +AE V+E+L+ ++LD
Sbjct: 74 ---RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQLDW 128
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
+ D P LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 129 LADRY---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 8e-15
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 14/183 (7%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-KVQETFARVS- 266
++ ++ G L+G +GAGK+T+ ++ G + G+I + G P + AR
Sbjct: 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARI 116
Query: 267 GYCEQTDIHSPQITVEES-VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
G Q D + TV E+ ++F + + +++ + +LE L+ D+ V
Sbjct: 117 GVVPQFDNLDLEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADARVS- 171
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC 385
LS ++RLT+A L+ +P ++ +DEPTTGLD A +I +++++ G+TI+
Sbjct: 172 ----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 227
Query: 386 TIH 388
T H
Sbjct: 228 TTH 230
|
Length = 340 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 9e-15
Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 14/183 (7%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK-VQETFARVS- 266
D++ ++ G L+G +GAGK+T+ +L G G+I + G P + ARV+
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLG--MISPDRGKITVLGEPVPSRARLARVAI 79
Query: 267 GYCEQTDIHSPQITVEESV-IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
G Q D P+ TV E++ +F + + +++ + +LE L+ D V +
Sbjct: 80 GVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADVRVAL 135
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC 385
LS ++RLT+A L+ +P ++ +DEPTTGLD A +I +++++ G+TI+
Sbjct: 136 -----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 190
Query: 386 TIH 388
T H
Sbjct: 191 TTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 9e-15
Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 18/202 (8%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L D++ ++ G L AL+G SGAGK+TLL ++AG +T + G I++ G + V
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA--GRIRLNGRVLFDVSNLAVR 75
Query: 267 ----GYCEQTDIHSPQITVEESVIFSAWLRL--APEINSKTKAEFVNEVLETIELDGIKD 320
G+ Q P +TV +++ F +R E + + E E+L ++L+G+ D
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE---ELLRLVQLEGLAD 132
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-T 379
P LS QR+R+ +A L P ++ +DEP LDA+ + R ++ + D
Sbjct: 133 RY---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL 187
Query: 380 GRTIVCTIHQPSIDIFEAFDEV 401
G T V H + E D V
Sbjct: 188 GVTTVFVTHDQE-EALELADRV 208
|
Length = 345 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 26/211 (12%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR 264
+ L D++ R G + ALMG +GAGK+TLL +L+G + G I I G FA
Sbjct: 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA--GSILIDGQEMR---FAS 72
Query: 265 VSGYCEQ--TDIH-----SPQITVEESVIFSAWLRLAPE----INSKTKAEFVNEVLETI 313
+ I+ P++TV E++ +L P +N + E LE +
Sbjct: 73 TTAALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHL 128
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
+D D+ + LS QR+ + IA L N +I DEPT+ L AR + R +
Sbjct: 129 GVDIDPDTPLK-----YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183
Query: 374 KNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404
+ + GR I+ H+ +IF D + F
Sbjct: 184 RELRAEGRVILYVSHRME-EIFALCDAITVF 213
|
Length = 501 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 3e-14
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGS--MEGEIKIGGYPKVQE 260
+ L DV+ S++ G L+G SG+GK+TL + G + T+GS +G+ + ++++
Sbjct: 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78
Query: 261 TFARVSGYCEQTDIHS--PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-G 317
+ Q + S P++T+ E + + + + E V +L + L
Sbjct: 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHG-KLSKKEARKEAVLLLLVGVGLPEE 137
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
+ + P + LS QR+R+ IA L NP ++ DEPT+ LD A I+ +K
Sbjct: 138 VLNRY---P--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 4e-14
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ET 261
RLL V+ LRPG + A++G +GAGK+TLL L+G + S GE+ + G P E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS--GEVTLNGVPLNSWPPEE 72
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTK--AEFVNEVLETIELDGIK 319
AR Q + TV+E V R+ + + + L +L G+
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVEL------VANPSIIFMDEPTTGLDARAAAIIMRAV 373
LS +++R+ +A L V + +F+DEPT+ LD +R
Sbjct: 130 GRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 374 KNVVDTGRTIVCTIH 388
+ + G ++ +H
Sbjct: 185 RQLAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-14
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGG-----YPKVQ 259
LL +V ++ G + LMG SG GK+TLL + G S GE+ + P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
R G Q + P ++V ++++F+ L + + N LE LDG
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
P LS QR R+ + L+A P + +DEP + LD
Sbjct: 129 HQD---PAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 8e-14
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 197 RGFTEKKLRL---LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIG 253
+ ++K R L ++ ++ G + +G +GAGKTT L +L+G S GE+++
Sbjct: 24 KSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS--GEVRVA 81
Query: 254 G---YPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
G + + ++ R+ Q + V +S L I A F +
Sbjct: 82 GLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDS------FYLLAAIYDLPPARFKKRLD 135
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E EL +++ L+ P V LS QR R IA L+ P I+F+DEPT GLD A I
Sbjct: 136 ELSELLDLEE-LLDTP-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193
Query: 371 RAVKNVV-DTGRTIVCTIH 388
+K + G T++ T H
Sbjct: 194 NFLKEYNRERGTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 9e-14
Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 18/200 (9%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP---K 257
E +L +L V ++ G A++G SG+GK+TLL VLAG S GE+++ G P
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS--GEVRLLGQPLHKL 77
Query: 258 VQETFARVS----GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 313
++ A + G+ Q+ P +T E+V LR +S+ A+ +LE +
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---ALLEAV 134
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD-ARAAAIIMRA 372
G+ L P LS +++R+ +A P ++F DEPT LD A I
Sbjct: 135 ---GLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 373 VKNVVDTGRTIVCTIHQPSI 392
+ G T+V H P +
Sbjct: 190 FALNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 9e-14
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 30/199 (15%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---QETF 262
+L +++ ++PG + ++G SG+GK+TL ++ + G + + G+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN--GRVLVDGHDLALADPAWL 74
Query: 263 ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK--- 319
R G Q E+V+F+ +R I + V+E +L G
Sbjct: 75 RRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLAGAHDFI 121
Query: 320 -------DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
D++VG G GLS QR+R+ IA L+ NP I+ DE T+ LD + IMR
Sbjct: 122 SELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 373 VKNVVDTGRTIVCTIHQPS 391
+ ++ GRT++ H+ S
Sbjct: 181 MHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 1e-13
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 25/191 (13%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSM--EGEIKIGGYPKV 258
K ++L+ V+ ++ G + AL+G +GAGKTTLL + G +GS+ +G I G P
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR-DITGLP-- 68
Query: 259 QETFARVS---GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEF-VNEVLETI- 313
R GY + P++TVEE+ L L + K + + V E
Sbjct: 69 --PHERARAGIGYVPEGRRIFPELTVEEN------LLLGAYARRRAKRKARLERVYELFP 120
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
L + L G LS +++ L IA L++ P ++ +DEP+ GL + I A+
Sbjct: 121 RLKERRKQLAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 175
Query: 374 KNVVDTGRTIV 384
+ + D G TI+
Sbjct: 176 RELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 1e-13
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 11/186 (5%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFAR 264
+L D++ + G L AL+G SG GKTTLL +AG + G I I R
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 265 VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324
Q P + VE++V F + P KA+ V + ++L G+ D+
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMP------KADIAERVADALKLVGLGDAAAH 133
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT--GRT 382
+P LS ++R+ IA + P ++ +DEP + LDA A + + + + T
Sbjct: 134 LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 383 IVCTIH 388
I+C H
Sbjct: 192 ILCVTH 197
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 60/198 (30%), Positives = 89/198 (44%), Gaps = 21/198 (10%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY-----PKVQ 259
+ L DV + G + A++G SGAGK+TLL L G GEI G +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG--LVDPTSGEILFNGVQITKLKGKE 75
Query: 260 ETFARVS-GYCEQTDIHSPQITVEESVIF------SAWLRLAPEINSKTKAEFVNEVLET 312
R G Q P+++V E+V+ S W L + + KA+ L+
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQ----ALDA 131
Query: 313 IELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
+E GI D + LS Q++R+ IA LV P II DEP LD +A +M
Sbjct: 132 LERVGILD-KAYQR-ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI 189
Query: 373 VKNVVDT-GRTIVCTIHQ 389
+K++ G T++ +HQ
Sbjct: 190 LKDINQEDGITVIVNLHQ 207
|
Length = 258 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 17/191 (8%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQET--- 261
R+L D++ SL G +TAL+G +G GK+TLL A T S G + +G P +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS--GTVFLGDKPISMLSSRQ 73
Query: 262 FARVSGYCEQTDIH-SPQ-ITVEESVIF--SAWLRLAPEINSKTKAEFVNEVLETIELDG 317
AR Q H +P+ ITV E V + S WL L ++++ A VN+ +E ++
Sbjct: 74 LARRLALLPQ--HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA-RVNQAMEQTRINH 130
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
+ D + LS QR+R +A+ L + ++ +DEPTT LD +MR ++ +
Sbjct: 131 LADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 378 DTGRTIVCTIH 388
G+T+V +H
Sbjct: 186 TQGKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-13
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE------ 260
L ++ ++ PG A++G SGAGK+TLL + G I + G +
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLR 75
Query: 261 TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK----TKAEFVNEVLETIELD 316
R G Q ++TV E+V+ L P S ++ + L +E
Sbjct: 76 KLRRRIGMIFQHYNLIERLTVLENVL-HGRLGYKPTWRSLLGRFSEEDKE-RALSALERV 133
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
G+ D + LS Q++R+ IA L P +I DEP LD + + +M +K +
Sbjct: 134 GLAD--KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRI 191
Query: 377 -VDTGRTIVCTIHQ 389
+ G T++ +HQ
Sbjct: 192 NKEDGITVIINLHQ 205
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-13
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 22/203 (10%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTG--SME 247
LE E L ++ +L G + G +G+GKTTLL +LAG G +
Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60
Query: 248 GEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVN 307
G G +++ AR Y ++V E+ LR +S E V
Sbjct: 61 G----GPLDFQRDSIARGLLYLGHAPGIKTTLSVLEN------LRFWHADHSD---EQVE 107
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367
E L + L+G +D P V LS Q++R+ +A L++ + +DEPTT LD A
Sbjct: 108 EALARVGLNGFED----RP-VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVA 162
Query: 368 IIMRAVKNVVDTGRTIVCTIHQP 390
A+ G +V T HQ
Sbjct: 163 RFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-13
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 25/171 (14%)
Query: 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP----------KVQETFARV 265
+T + G SGAGK+TLL +AG + G I + G Q+ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDG--GTIVLNGTVLFDSRKKINLPPQQ---RK 76
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
G Q P + V E++ F ++ V+E+L+ + LD + +
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGL-----KRKRNREDRISVDELLDLLGLDHLLNR---- 127
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
LS +++R+ +A L A P ++ +DEP + LD ++ +K +
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQI 177
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 59/206 (28%), Positives = 91/206 (44%), Gaps = 43/206 (20%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----- 259
+L V + G + A++G SG+GK+TLL ++ G GEI I G Q
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK--GEILIDGEDIPQLSEEE 79
Query: 260 --ETFARVSGYCEQ-----TDIHSPQITVEESVIFSAWLRLAPEIN-SKTKAEFVNE-VL 310
E R+ G Q + +TV E+V F P +K + E VL
Sbjct: 80 LYEIRKRM-GVLFQQGALFSS-----LTVFENVAF-------PLREHTKLPESLIRELVL 126
Query: 311 ETIELDGIKDSLVGIPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
+E LVG+ G LS RKR+ +A + +P ++F+DEPT+GLD
Sbjct: 127 MKLE-------LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 365 AAAIIMRAVKNVVDT-GRTIVCTIHQ 389
+A +I ++ + D G T++ H
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 4e-13
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG-----YPKVQET 261
L DV+ + G L G SGAGK+TLL ++ G + G+I + G +
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR--GKILVNGHDLSRLKGREIP 75
Query: 262 FARVS-GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
F R G Q P TV E+V + K E V E ++L G+K
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVAL------PLRVIGKPPREIRRRVSEVLDLVGLKH 129
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
+P + LS +++R+ IA +V P+++ DEPT LD + IMR + + G
Sbjct: 130 KARALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187
Query: 381 RTIVCTIH 388
T++ H
Sbjct: 188 TTVLMATH 195
|
Length = 223 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 4e-13
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 24/202 (11%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE 260
++K +L D+ S++PG A++G +GAGKTTL+++L +G+I I G
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDI 70
Query: 261 TFARVS---GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG 317
+ + G Q D T+ E++ E V E +
Sbjct: 71 SRKSLRSMIGVVLQ-DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHD 120
Query: 318 IKDSL-------VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
L +G LS +R+ L IA ++ +P I+ +DE T+ +D +I
Sbjct: 121 FIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 371 RAVKNVVDTGRTIVCTIHQPSI 392
A++ ++ GRT + H+ S
Sbjct: 180 EALEKLMK-GRTSIIIAHRLST 200
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 4e-13
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 20/190 (10%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L D + ++ G + AL+GV+G+GK+TL L G S G+I I G P Q +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS--GKISILGQPTRQALQKNLV 80
Query: 267 GYC---EQTDIHSPQITVEESVIFS-----AWLRLAPEINSKTKAEFVNEVLETIELDGI 318
Y E+ D P + VE+ V+ WLR A K + V L +++
Sbjct: 81 AYVPQSEEVDWSFP-VLVEDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARVDMVEF 135
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
+ +G LS Q+KR+ +A + +I +DEP TG+D + A I+ ++ + D
Sbjct: 136 RHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190
Query: 379 TGRTIVCTIH 388
G+T++ + H
Sbjct: 191 EGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 5e-13
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGGYPK 257
E+ + + D++ + G + +G +GAGK+T L +L G T G++++ G
Sbjct: 32 RKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGK-- 86
Query: 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAW-------LRLAPEINSKTKAEFVNEVL 310
+ F R Y + Q W L + I EF +
Sbjct: 87 --DPFRRREEYLRSIGLVMGQKLQLW------WDLPALDSLEVLKLIYEIPDDEFAERLD 138
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E+ ++ L P V LS QR R +A L+ P ++F+DEPT GLD A A I
Sbjct: 139 FLTEILDLEGFL-KWP-VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196
Query: 371 RAVKNVVDT-GRTIVCTIH 388
+K + T++ T H
Sbjct: 197 EFLKEYNEERQATVLLTTH 215
|
Length = 325 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 22/211 (10%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQET- 261
+ DV+ + PG + ++G SG+GK+TL L G + GE+ + G + +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 262 ------FARVSGYCEQTDIHS--PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 313
+ Q + S P +T+ + + + L ++AE +E +
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH-----GKGSRAEARKRAVELL 137
Query: 314 ELDGIKDSLV--GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR 371
E G+ D P + LS R+R+ IA+ L P ++ DEPTT LD A I+
Sbjct: 138 EQVGLPDPERRDRYP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD 195
Query: 372 AVKN-VVDTGRTIVCTIHQPSIDIFEAFDEV 401
+K+ + G ++ H + + E D V
Sbjct: 196 LLKDLQRELGMAVLFITHDLGV-VAELADRV 225
|
Length = 539 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 5e-13
Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 28/198 (14%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGG----- 254
K +++ V+ S++ G + L+G +GAGKTT ++ G + G+I + G
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD----SGKILLDGQDITK 66
Query: 255 YPKVQETFARVS-GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEF---VNEVL 310
P + AR+ GY Q ++TVEE+ + EI +K E + E+L
Sbjct: 67 LPMHKR--ARLGIGYLPQEASIFRKLTVEEN------ILAVLEIRGLSKKEREEKLEELL 118
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E + ++ S LS +R+R+ IA L NP + +DEP G+D A I
Sbjct: 119 EEFHITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 371 RAVKNVVDTGRTIVCTIH 388
+ +K + D G ++ T H
Sbjct: 174 KIIKILKDRGIGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-13
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258
+ K L DV+ ++ G L ++G SG GKTTLL+++AG T G I++ G
Sbjct: 13 YEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIE 70
Query: 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318
R G Q + P + V ++V F L+L I + E +++L + L+G
Sbjct: 71 GPGAER--GVVFQNEALLPWLNVIDNVAFG--LQLR-GIEKAQRREIAHQMLALVGLEGA 125
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
+ + LS R+R+ IA L P ++ +DEP LDA
Sbjct: 126 EHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 4 FVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNE 63
++ F + A+T G ++ LLFGGF I+ S+PV+ KW ++S YG GL +N+
Sbjct: 492 LISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQ 551
Query: 64 FLAPRWQKMLPTNTTI-----GQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLAL 118
+ + NTT G+ ILE+ L+F ++ L L + AL
Sbjct: 552 WSDVDNIECTSANTTGPCPSSGEVILET--LSFRNADLYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 8e-13
Identities = 78/300 (26%), Positives = 121/300 (40%), Gaps = 44/300 (14%)
Query: 97 WISLGALFGFALLLNIGFTLALTFLKTSGSS--RSMISLEKFSEMRVSEDSTSGEIVKGH 154
+++GAL F L L + L S R+ + E+ E+ E V+
Sbjct: 265 SLTVGALAAFILYLLR-LLTPILQLGEVVSLLQRASAAAERLFELLDEE-----PEVEDP 318
Query: 155 SRSTPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSL 214
T + F+++ + K +L D++ S+
Sbjct: 319 PDPLKDTIGS--------------IEFENVSFSYP------------GKKPVLKDISFSI 352
Query: 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP--KVQETFARVS-GYCEQ 271
PG A++G SG+GK+TL+ +L GEI I G + R G Q
Sbjct: 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDIRDISLDSLRKRIGIVSQ 410
Query: 272 TDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331
D T+ E++ EI K +E + L D++VG GVN L
Sbjct: 411 -DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGVN-L 466
Query: 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391
S QR+RL IA L+ NP I+ +DE T+ LD A+I A+K ++ GRT + H+ S
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS 525
|
Length = 567 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 33/200 (16%)
Query: 186 YYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS 245
Y L +RERG +++ + DV+ LR G L+G SG+GK+TL +LAG
Sbjct: 290 YGSRKGLFVRERG----EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--P 343
Query: 246 MEGEIKIGGYPKVQETFARVSGYCEQTDI--------HSPQITVEESVIFSAWLRLAPEI 297
G I G + T + + + +P++TV + + LR+
Sbjct: 344 SSGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGG 400
Query: 298 NSKTKAEFVNEVLETIELDGIKDSLVGIPG------VNGLSTEQRKRLTIAVELVANPSI 351
+ + V E+LE LVG+P + LS QR+R+ IA L P +
Sbjct: 401 SGAERRARVAELLE----------LVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL 450
Query: 352 IFMDEPTTGLDARAAAIIMR 371
+ +DEP + LD A ++
Sbjct: 451 LILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE 260
+ R+L V+ S+ G + A++G SG+GK+TLL +L G S GE+ G +
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS--GEVLFNGQSLSKL 72
Query: 261 TFARVS-------GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 313
+ + G+ Q P T E+V I K+ E E +
Sbjct: 73 SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL------IGKKSVKEAKERAYEML 126
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
E G++ + P LS +R+R+ IA LV PS++ DEPT LD A II
Sbjct: 127 EKVGLEHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKII 180
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 42/181 (23%), Positives = 87/181 (48%), Gaps = 11/181 (6%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGY 268
D++ S+ G + L+G +GAGKTT + ++ G GE+ G P R+ GY
Sbjct: 18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILG--IILPDSGEVLFDGKPLDIAARNRI-GY 74
Query: 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328
+ P++ V + +++ A L+ + + ++E LE +EL + V
Sbjct: 75 LPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANK-----RV 126
Query: 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
LS ++++ ++ +P ++ +DEP +GLD ++ ++ + G+T++ + H
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186
Query: 389 Q 389
Q
Sbjct: 187 Q 187
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTG--SMEGEIKIGGYPKVQETF 262
L +V+ + G ++G +G+GK+ LL+ +AG + +G + G+ I P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK-DITNLPPEKRDI 73
Query: 263 ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
Y Q P +TV +++ + R K E +VLE E+ GI L
Sbjct: 74 ----SYVPQNYALFPHMTVYKNIAYGLKKRKVD------KKEIERKVLEIAEMLGIDHLL 123
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT 382
P LS +++R+ IA LV NP I+ +DEP + LD R + +K +
Sbjct: 124 NRKPET--LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181
Query: 383 IVCTIH 388
V +H
Sbjct: 182 TV--LH 185
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 3e-12
Identities = 64/194 (32%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGS--MEGEIKIGGYPKVQ 259
+V ++ G + AL+G SG GKTT L D+ G + TG ++G+ G P+V
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG--PRVD 79
Query: 260 E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DG 317
R G Q P ++V ++V+ A L+LA + E L L D
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDE 137
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII---MRAVK 374
+KD L P GLS Q++RL IA L P I+ MDEPT+ LD + A I M +K
Sbjct: 138 VKDRL-KTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK 195
Query: 375 NVVDTGRTIVCTIH 388
V TI+ H
Sbjct: 196 KVT----TIIIVTH 205
|
Length = 252 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 3e-12
Identities = 51/190 (26%), Positives = 100/190 (52%), Gaps = 11/190 (5%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG---RKTTGSMEGEIKIGGYPKV 258
K R++ DV+ ++ G + L+G +GAGKTT ++ G R + + I P +
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP-L 72
Query: 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318
R GY Q +++V ++++ A L++ +++++ + + NE++E ++ +
Sbjct: 73 HARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHL 130
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
+DS+ LS +R+R+ IA L ANP I +DEP G+D + I R ++++ D
Sbjct: 131 RDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185
Query: 379 TGRTIVCTIH 388
+G ++ T H
Sbjct: 186 SGLGVLITDH 195
|
Length = 241 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 19/200 (9%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSM--EGEIKIGGYP 256
+ L DV+ + G + ++G SGAGK+TLL ++ R T+GS+ +G+ +
Sbjct: 16 TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ-DLTALS 74
Query: 257 KVQETFARVS-GYCEQ--TDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 313
+ + R G Q + S TV E+V F L LA KAE V E +
Sbjct: 75 EAELRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELA----GVPKAEIKQRVAELL 126
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
EL G+ D P LS Q++R+ IA L NP I+ DE T+ LD I+ +
Sbjct: 127 ELVGLSDKADRYPA--QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELL 184
Query: 374 KNVVDT-GRTIVCTIHQPSI 392
K++ G TIV H+ +
Sbjct: 185 KDINRELGLTIVLITHEMEV 204
|
Length = 339 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 4e-12
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARV 265
L V+ ++ G L+G SG GKTTLL ++AG +T S GEI + G R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS--GEILLDGKDITNLPPHKRP 73
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
Q P +TV E++ F LRL ++ K V E L+ ++L+G +
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFG--LRLKKLPKAEIKER-VAEALDLVQLEGYANRK--- 127
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 128 --PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 7e-12
Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 51/210 (24%)
Query: 169 KMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGA 228
++L + ++V+F GF + L D++ S+ PG L L+G +GA
Sbjct: 3 PIILYLDGVSVSFG---------------GF-----KALNDLSFSVDPGELRVLIGPNGA 42
Query: 229 GKTTLLDVLAG--RKTTGSM--EGEIKIGGYPKVQETFARVSGYCE--QTDIHSPQITVE 282
GKTTL+DV+ G R G + +G+ + P+ + AR G Q +TV
Sbjct: 43 GKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--IARA-GIGRKFQKPTVFENLTVR 99
Query: 283 ESVIFSAWLRLAPEIN-----------SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331
E+ L LA + + ++E+L TI L +D L + L
Sbjct: 100 EN------LELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----L 148
Query: 332 STEQRKRLTIAVELVANPSIIFMDEPTTGL 361
S Q++ L I + L +P ++ +DEP G+
Sbjct: 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 8e-12
Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 44/192 (22%)
Query: 217 GVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYP---------KVQETFARV 265
G + AL+G +GAGK+TL G + T GE+ I G P +V++T V
Sbjct: 28 GEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKYDKKSLLEVRKTVGIV 83
Query: 266 SGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL- 322
+ D + +P TVEE V F +N E V + +K++L
Sbjct: 84 F---QNPDDQLFAP--TVEEDVAFGP-------LNLGLSKEEVEK--------RVKEALK 123
Query: 323 -VGIPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
VG+ G LS Q+KR+ IA L P II +DEPT+GLD A+ IM+ + ++
Sbjct: 124 AVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL 183
Query: 377 VDTGRTIVCTIH 388
G TI+ + H
Sbjct: 184 NKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLS 60
+ F+A++ + A G +L +LL GF I SMP WL+W ++++P+TY L
Sbjct: 147 LGLFIAALAPSFEDASQIGPLLLLPLLLLSGFFIPVDSMPGWLQWIYYLNPLTYAIEALR 206
Query: 61 LNEF 64
NEF
Sbjct: 207 ANEF 210
|
Length = 210 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 15/192 (7%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258
F +KK + +++ + PG + L+G +GAGKTT ++ G EGEI G P
Sbjct: 12 FGDKKA--VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG--LLEPTEGEITWNGGPLS 67
Query: 259 QETFARVSGYC-EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG 317
QE R+ GY E+ ++ P++TVE+ + + A L+ P+ + K + LE +E+ G
Sbjct: 68 QEIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKKLQAW---LERLEIVG 122
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
K + LS ++++ ++ P ++ +DEP +GLD ++ A+ +
Sbjct: 123 KKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK 177
Query: 378 DTGRTIVCTIHQ 389
+ G TI+ + H+
Sbjct: 178 EEGATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-11
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 20/183 (10%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQT 272
S G L L+G +GAGKTTLL + G +G +K+ G + R GY Q
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILG--LIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 273 DIHS-----PQITVEESVIFSAWLRLAPEINSKTKAEF--VNEVLETIELDGIKDSLVGI 325
H P I+V +V+ + A+F V + L + L + D VG
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPC-VADFAAVRDALRRVGLTELADRPVG- 112
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC 385
LS QR+R+ +A L PS++ +DEP TGLD ++ + G I+
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 386 TIH 388
T H
Sbjct: 169 TTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFAR 264
L V+ ++RPG + AL+G +GAGK+TL+ +L+G GEI I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 265 VSGYCEQTD-----IH-----SPQITVEESVIFSAWL-RLAPEINSKTKAEFVNEVLETI 313
S + +H P ++V E++ R I+ K E+L +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
LD D+LVG LS QR+ + IA L + ++ +DEPT L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 374 KNVVDTGRTIV 384
+ + G I+
Sbjct: 189 RRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQIT 280
L+G SG GKTTLL +LAG + S G I + G R Q+ P +T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDS--GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLT 340
VEE+V F L++ ++ K V E L ++L+ D + LS Q++R+
Sbjct: 59 VEENVAFG--LKMRKVPRAEIKPR-VLEALRLVQLEEFADR-----KPHQLSGGQQQRVA 110
Query: 341 IAVELVANPSIIFMDEPTTGLDAR 364
+A LV P I+ +DEP + LD +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-11
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 24/207 (11%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK 251
LE+++ G+ ++L +++ S+R G A+ G SG GK+TLL ++A + S G +
Sbjct: 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS--GTLL 61
Query: 252 IGGYP----KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVN 307
G K + +VS YC QT TVE+++IF +R N +
Sbjct: 62 FEGEDVSTLKPEAYRQQVS-YCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAAL 114
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA- 366
++L L DS++ + LS +++R+ + L P I+ +DE T+ LD
Sbjct: 115 DLLARFALP---DSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170
Query: 367 ---AIIMRAVKNVVDTGRTIVCTIHQP 390
+I R V+ + ++ H
Sbjct: 171 NIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-T 261
K++ L V+ + G + AL+G +GAGKTTLL + G G I G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRSGRIIFDGEDITGLPP 72
Query: 262 FARVS---GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI----- 313
R Y + P++TVEE+ L L +A+ LE +
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEEN------LLLGAYARRDKEAQ--ERDLEEVYELFP 124
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
L ++ G LS +++ L IA L++ P ++ +DEP+ GL + I A+
Sbjct: 125 RLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 179
Query: 374 KNVVD-TGRTIV 384
K + G TI+
Sbjct: 180 KELRKEGGMTIL 191
|
Length = 237 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP---- 256
E K +L V +++ G + A+MG +G+GK+TL + G EGEI G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILEL 73
Query: 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA---EFVNEVLETI 313
E Q + P +T + +LR A + EF+ E+ E
Sbjct: 74 SPDERARAGIFLAFQYPVEIPGVTNSD------FLRAAMNARRGARGILPEFIKELKEKA 127
Query: 314 ELDGIKDSLVGIPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
EL G+ + + VN G S ++KR I L+ P + +DEP +GLD A I+
Sbjct: 128 ELLGLDEEFLE-RYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186
Query: 373 VKNVVDTGRTIVCTIHQPSI 392
+ + + GR ++ H +
Sbjct: 187 INALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 9/193 (4%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ--- 259
K L ++ SL+ G A++G SG+GK+TL ++ G S G +++ G Q
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS--GSVRLDGADLKQWDR 387
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
ETF + GY Q D+ TV E++ +I K V+E++ + DG
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLP-DGY- 444
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
D+++G PG LS QR+R+ +A L +P ++ +DEP + LD + A+K +
Sbjct: 445 DTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR 503
Query: 380 GRTIVCTIHQPSI 392
G T+V H+PS+
Sbjct: 504 GITVVVITHRPSL 516
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFA 263
L ++ +L+ G ++G SG+GK+TL +L G S G +++ G Q E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS--GSVRLDGADLRQWDREQLG 409
Query: 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK-----TKAEFVNEVLETIELDGI 318
R GY Q D+ T+ E++ R E + + + V+E++ + G
Sbjct: 410 RHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPEKVIEAARLAGVHELILRLP-QGY 462
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
D+ +G G LS QR+R+ +A L +P ++ +DEP + LD+ A + A+
Sbjct: 463 -DTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA 520
Query: 379 TGRTIVCTIHQPSI 392
G T+V H+PS
Sbjct: 521 RGGTVVVIAHRPSA 534
|
Length = 580 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 25/179 (13%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKV 258
+ L +V+ + G ++G SG+GK+TL +LAG + ++G I + G P
Sbjct: 17 KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG----SILLDGKPLA 72
Query: 259 QETFARVSGYCE----QTDIHS---PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE 311
+ A+ Y D +S P+ TV + ++ + E
Sbjct: 73 PKKRAKAF-YRPVQMVFQDPYSSLNPRRTVGRI-LSEPL-------RPHGLSKSQQRIAE 123
Query: 312 TIELDGIKDS-LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
++ G+ S L P + LS QR+R+ IA L+ P ++ +DEPT+ LD A I
Sbjct: 124 LLDQVGLPPSFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180
|
Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 55/190 (28%), Positives = 80/190 (42%), Gaps = 51/190 (26%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPKVQ 259
L D+ + +TAL+G SG GK+TLL D++ G + EGE+ + G
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV----EGEVLLDG----- 73
Query: 260 ETFARVSGYCEQTDIHSPQITVEE-----SVIF--------------SAWLRLAPEINSK 300
+I+ P++ V E ++F + LRL I K
Sbjct: 74 ------------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH-GIKDK 120
Query: 301 TKAEFVNEVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359
E V L+ L D +KD L GLS Q++RL IA L P ++ MDEPT+
Sbjct: 121 ELDEIVESSLKKAALWDEVKDRLHKSA--LGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178
Query: 360 GLDARAAAII 369
LD + I
Sbjct: 179 ALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-11
Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 17/171 (9%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA-- 263
+L++V+ S+ G + A++G SG+GK+TLL +L G T S G++ G P + + A
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS--GDVIFNGQPMSKLSSAAK 81
Query: 264 -----RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318
+ G+ Q P T E+V I K AE + LE + G+
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLL------IGKKKPAEINSRALEMLAAVGL 135
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
+ P + LS +R+R+ IA LV NP ++ DEPT LDAR A I
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184
|
Length = 233 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-11
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L D+ +L G L ++G SG GKTTLL+++AG G I + G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH--GSITLDGKPVEGPGAER-- 72
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
G Q + P V+++V F L ++ A ++L+ + L+G + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAH---QMLKKVGLEGAEKRYIW-- 127
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-11
Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 24/183 (13%)
Query: 219 LTALMGVSGAGKTTLL-------DVLAGRKTTG--SMEGEIKIGGYPKVQETFARVSGYC 269
+TAL+G SG GK+TLL D++ G K TG +M+GE I G V + +V G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE-DIYGNIDVADLRIKV-GMV 88
Query: 270 EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DGIKDSLVGIPGV 328
Q P +++ E+V + LR + K E V L L D +KD L
Sbjct: 89 FQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAF 144
Query: 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGR---TIVC 385
GLS Q++RL IA + P +I MDEPT+ LD I ++ +++ + TIV
Sbjct: 145 -GLSGGQQQRLCIARTIAMEPDVILMDEPTSALD----PIATHKIEELMEELKKNYTIVI 199
Query: 386 TIH 388
H
Sbjct: 200 VTH 202
|
Length = 249 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 69/307 (22%), Positives = 120/307 (39%), Gaps = 45/307 (14%)
Query: 97 WISLGALFGFALLLNIG---FTLALTFLKTSGSSRSMISLEKFSEMRVSEDSTSGEIVKG 153
+ +G L A + G A L +LE F + G+++
Sbjct: 255 LLVIGLLLWMAAQVGAGALAQPGAALALLVI-----FAALEAFEPLAPGAFQHLGQVI-- 307
Query: 154 HSRSTPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFT--EKKLRLLYDVT 211
S + + K ++ P E Q L E+R FT ++ + L +
Sbjct: 308 ASA-RRLNDILDQKPEVTFPDEQTATTGQAL--------ELRNVSFTYPGQQTKALKNFN 358
Query: 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQ 271
+L G A++G SG+GK+TLL +LAG G I + G ++ EQ
Sbjct: 359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ--GSITLNGVE--------IASLDEQ 408
Query: 272 TDIHSPQITVEESVIFSAWLR----LAPEINSKTKAEFVNEVLETIEL-DGIKDSLVGIP 326
+ + + +FS LR LA N E + L+ + L ++ + G+
Sbjct: 409 ALRETISVLTQRVHLFSGTLRDNLRLA---NPDASDEELWAALQQVGLEKLLESAPDGLN 465
Query: 327 -----GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGR 381
G LS +R+RL +A L+ + + +DEPT GLD ++ + + G+
Sbjct: 466 TWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GK 524
Query: 382 TIVCTIH 388
T++ H
Sbjct: 525 TLLMVTH 531
|
Length = 573 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-11
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 198 GFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257
G E +L +L V ++ G AL+G SG+GK+TLL +LAG GS GE+ + G P
Sbjct: 17 GQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGS-SGEVSLVGQPL 74
Query: 258 VQ-------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
Q + A+ G+ Q+ + P + E+V A LR S+ A
Sbjct: 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGA------K 128
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+E G+ L +P LS +++R+ +A P ++F DEPT LD
Sbjct: 129 ALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 7e-11
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTG--SMEGEIKIGGYPK 257
LYD+T S+ +TAL+G SG GK+TLL D++ G + TG GE +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-D 316
V ++ G Q P+ ++ E+V + R+ E N KT V + L+ L D
Sbjct: 82 VVALRRKI-GMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
+KD L LS Q++RL IA L NP +I MDEP + LD A A I
Sbjct: 138 EVKDRLH--DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKI 188
|
Length = 253 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 7e-11
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-KVQETFARV 265
L V+ + G +T ++G +G GKTTLL L G S G I++ G R
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS--GSIRLDGEDITKLPPHERA 73
Query: 266 S---GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
Y Q P++TVEE+ L + + +E+ EL + +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEEN------LLTGLAALPRRSRKIPDEIY---ELFPVLKEM 124
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGR- 381
+G G + LS Q+++L IA LV P ++ +DEPT G+ I R ++ + G
Sbjct: 125 LGRRGGD-LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183
Query: 382 TIV 384
I+
Sbjct: 184 AIL 186
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 7e-11
Identities = 60/184 (32%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 218 VLTALMGVSGAGKTTLL---DVLAGRKTTGSMEGEIKIGG----YPKVQETFARVS-GYC 269
+ ALMG SG GK+TLL + L +EGE+++ G P V R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 270 EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA-EFVNEVLETIEL-DGIKDSLVGIPG 327
Q P +T+ ++V ++L + SK + E V L+ L D +KD L P
Sbjct: 91 FQYPNPFPHLTIYDNVAIG--VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148
Query: 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTI 387
LS QR+RL IA L P I+ MDEPT +D A I + + TIV
Sbjct: 149 --NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVT 205
Query: 388 HQPS 391
H P+
Sbjct: 206 HSPA 209
|
Length = 253 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 9e-11
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 31/154 (20%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG------YPK---VQETFARVSGYCEQT 272
L+G SG GKTT L ++AG + S G I IGG PK + F + Y
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTS--GRIYIGGRDVTDLPPKDRDIAMVFQNYALY---- 84
Query: 273 DIHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330
P +TV +++ F LR P EI+ + V EV E ++++ + D
Sbjct: 85 ----PHMTVYDNIAFGLKLRKVPKDEIDER-----VREVAELLQIEHLLDRKP-----KQ 130
Query: 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
LS QR+R+ + +V P + MDEP + LDA+
Sbjct: 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-10
Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 61/180 (33%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFAR 264
L V+ S+R G + AL+G +GAGK+TL+ +L+G + GEI + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDG---------- 61
Query: 265 VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324
++ SP+ + G
Sbjct: 62 -----KEVSFASPR--------------------------------DARRA--------G 76
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384
I V LS +R+ + IA L N ++ +DEPT L + + ++ + G ++
Sbjct: 77 IAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 29/170 (17%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGY------P 256
L D++ S++ G L+G SG GKTTLL ++AG R+T G I GG P
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA----GTIYQGGRDITRLPP 73
Query: 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIE 314
+ R G Q+ P +TV +++ + R E+ + V E+L+ +
Sbjct: 74 Q-----KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAER-----VAELLDLVG 123
Query: 315 LDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
L G + PG LS Q++R+ +A L +P ++ +DEP + LDAR
Sbjct: 124 LPGSERKY---PG--QLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 30/201 (14%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQET---FARV 265
++ + G L+G SG+GKTT + ++ + GEI I G ++ R
Sbjct: 19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMI--NRLIEPTSGEIFIDGEDIREQDPVELRRK 76
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
GY Q P +TVEE++ L P++ K + E + L VG+
Sbjct: 77 IGYVIQQIGLFPHMTVEENIA------LVPKLLKWPKEKIRERADELLAL-------VGL 123
Query: 326 PGVN-------GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
LS Q++R+ +A L A+P ++ MDEP LD + K +
Sbjct: 124 DPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ 183
Query: 379 T-GRTIVCTIHQPSIDIFEAF 398
G+TIV H DI EAF
Sbjct: 184 ELGKTIVFVTH----DIDEAF 200
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 17/191 (8%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP----KVQE 260
+L V S+R G L L+G +GAGKTTLL + G T + G + + G +
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA--GTVLVAGDDVEALSARA 74
Query: 261 TFARVSGYCEQTDIHSPQITVEESVIFSA---WLRLAPEINSKTKAEFVNEVLETIELDG 317
RV+ + T + S + V + V R + A V +E +
Sbjct: 75 ASRRVASVPQDTSL-SFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVAQ 131
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
D V LS +R+R+ +A L ++ +DEPT LD + V+ +V
Sbjct: 132 FADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV 186
Query: 378 DTGRTIVCTIH 388
D G+T V IH
Sbjct: 187 DDGKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 22/196 (11%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSME-GEIKIGGYPKV 258
KK +++ DV+ + G + L+G +GAGKTT ++ G R +G + + I P
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH 74
Query: 259 QETFARVS-GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA-----EFVNEVLET 312
+ AR+ GY Q ++TVE++ + EI K E ++ +LE
Sbjct: 75 KR--ARLGIGYLPQEASIFRKLTVEDN------IMAVLEIREKDLKKAERKEELDALLEE 126
Query: 313 IELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
+ ++DS + LS +R+R+ IA L ANP I +DEP G+D A I R
Sbjct: 127 FHITHLRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRI 181
Query: 373 VKNVVDTGRTIVCTIH 388
+K++ D G ++ T H
Sbjct: 182 IKHLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 1e-10
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 13/190 (6%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSME-GEIKIGGYPKVQE- 260
R L+D+ ++ G TAL+G +G+GK+TLL L G + T G + G+I + K +E
Sbjct: 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79
Query: 261 --TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318
+V + + + TV + V F P+ K + E +E+ G+
Sbjct: 80 KPVRKKVGVVFQFPESQLFEETVLKDVAF------GPQNFGIPKEKAEKIAAEKLEMVGL 133
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
D LS Q +R+ IA L P ++ +DEPT GLD +A +M+ +++
Sbjct: 134 ADEFWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ 192
Query: 379 TGRTIVCTIH 388
+G+T+V H
Sbjct: 193 SGQTVVLVTH 202
|
Length = 288 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
L+ + + +L+PG AL+G SG+GK+T+ ++AG GEI G P+ + +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG--LYQPWSGEILFDGIPREEIPREVL 551
Query: 266 SG---YCEQTDIHSPQITVEESVIFSAWLRLAPE---INSKTKAEFVNEVLETIELDGIK 319
+ +Q DI + TV +++ + W P+ + + A + + G
Sbjct: 552 ANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITS---RPGGY 605
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
D+ + G N LS QR+RL IA LV NPSI+ +DE T+ LD II ++
Sbjct: 606 DAELAEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 20/204 (9%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP---- 256
E K +L V +++ G + A+MG +G+GK+TL +AG + G I G
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL 69
Query: 257 KVQETFARVSGYCE-QTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
+ E AR + Q P ++ E +LR A + E ++L+ ++L
Sbjct: 70 EPDER-ARAGLFLAFQYPEEIPGVSNLE------FLRSALNARRSARGEEPLDLLDFLKL 122
Query: 316 DGIKDSLVGIP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 368
K +L+G+ VN G S ++KR I + P + +DE +GLD A I
Sbjct: 123 LKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKI 182
Query: 369 IMRAVKNVVDTGRTIVCTIHQPSI 392
+ + + + R+ + H +
Sbjct: 183 VAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 12/198 (6%)
Query: 198 GFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257
+ +L D++ + G AL+G SG+GK+TL++++ + G I I G+
Sbjct: 9 RYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGH-D 65
Query: 258 VQE----TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 313
V++ + R G Q D+ TV E++ + E+ +A +E +
Sbjct: 66 VRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIM-- 122
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
EL D+++G GV LS QR+R+ IA L+ +P I+ +DE T+ LD + ++ A+
Sbjct: 123 ELPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL 181
Query: 374 KNVVDTGRTIVCTIHQPS 391
+ ++ RT H+ S
Sbjct: 182 ERLMK-NRTTFVIAHRLS 198
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGG---Y-PK 257
DV ++ P +TA +G SG GK+T+L +V+ G +EGE+ + G Y P
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPG----ARVEGEVLLDGEDLYGPG 77
Query: 258 VQE-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL- 315
V R G Q P +++ ++V+ A L+L N K E V + L L
Sbjct: 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLW 135
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+ +KD L PG GLS Q++RL IA + P ++ MDEP + LD
Sbjct: 136 NEVKDRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 23/200 (11%)
Query: 202 KKLRLLYDVTG-----SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256
+R Y ++ G + A++G SGAGK+TLL+++AG +T S GEI I G
Sbjct: 5 DDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS--GEILINGVD 62
Query: 257 KVQETFAR--VSGYCEQTDIHSPQITVEESVIF--SAWLRLAPEINSKTKAEFVNEVLET 312
A VS ++ ++ + +TV +++ S L+L E + E V
Sbjct: 63 HTASPPAERPVSMLFQENNLFA-HLTVAQNIGLGLSPGLKLNAE-----QREKVEAAAAQ 116
Query: 313 IELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
+ L G L PG LS QR+R+ +A LV I+ +DEP + LD A ++
Sbjct: 117 VGLAGFLKRL---PGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171
Query: 373 VKNVVD-TGRTIVCTIHQPS 391
V + D T++ H P
Sbjct: 172 VSQLCDERKMTLLMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 19/176 (10%)
Query: 221 ALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYC----EQTD--I 274
A++G +GAGK+TL G S G + I G P +E V + + D I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPTS--GSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334
SP TVE+ + F + L ++ +T A V+ L + G+++ +P + LS
Sbjct: 92 FSP--TVEQDIAFGP-INLG--LDEETVAHRVSSALHML---GLEELRDRVP--HHLSGG 141
Query: 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQ 389
++KR+ IA + P ++ +DEPT GLD + ++ + ++ +T G T++ + HQ
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 3e-10
Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 52/209 (24%)
Query: 170 MVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAG 229
+L E L+V+F GF + L D++ + PG L ++G +GAG
Sbjct: 1 PILYLEGLSVSFD---------------GF-----KALNDLSLYVDPGELRVIIGPNGAG 40
Query: 230 KTTLLDVLAGRKTTGSMEGEIKIGG-----YPKVQETFARVSGYCE--QTDIHSPQITVE 282
KTT++DV+ G+ T EG + GG P+ Q AR +G Q +TV
Sbjct: 41 KTTMMDVITGK--TRPDEGSVLFGGTDLTGLPEHQ--IAR-AGIGRKFQKPTVFENLTVF 95
Query: 283 E----------SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332
E SV S + RL+ E + + EVLETI L D L G+ LS
Sbjct: 96 ENLELALPRDKSVFASLFFRLSAEEKDR-----IEEVLETIGLADEADRLAGL-----LS 145
Query: 333 TEQRKRLTIAVELVANPSIIFMDEPTTGL 361
Q++ L I + L+ +P ++ +DEP G+
Sbjct: 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-10
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 25/196 (12%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR--KTTGSMEGEIKIGGYPKV-------Q 259
DV+ L PG + ++G SG+GKTTLL ++GR G++ ++ G + +
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 260 ETFARVS-GYCEQTDIHSPQITVEESV-----IFSAWLRLAPEINSKTKAEFVNEVLETI 313
R G+ Q ++ V + + R I + +++ EV I
Sbjct: 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRA-EAQDWLEEV--EI 140
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
+LD I D +P S ++RL IA LV P ++FMDEPT GLD A ++ +
Sbjct: 141 DLDRIDD----LP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194
Query: 374 KN-VVDTGRTIVCTIH 388
+ V + G +V H
Sbjct: 195 RGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-10
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 24/195 (12%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY----------P 256
L+D+T G L+G SGAGK++LL VL + S G + I G
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS--GTLNIAGNHFDFSKTPSDK 75
Query: 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA--PEINSKTKAEFVNEVLETIE 314
+++ V +Q ++ P +TV+E++I A R+ + + +AE ++L+ +
Sbjct: 76 AIRDLRRNVGMVFQQYNLW-PHLTVQENLI-EAPCRVLGLSKDQALARAE---KLLKRLR 130
Query: 315 LDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
L D P LS Q++R+ IA L+ P ++ DEPT LD A I+ +K
Sbjct: 131 LKPYADRY---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIK 185
Query: 375 NVVDTGRTIVCTIHQ 389
+ +TG T V H+
Sbjct: 186 ELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 49/220 (22%), Positives = 84/220 (38%), Gaps = 59/220 (26%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFARVS 266
DV+ S++ G + AL+G +GAGK+TL+ +L G + GEI++ G
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE---------- 67
Query: 267 GYCEQTDIHSP-------------------QITVEESVIFSAWLRLAPEINSKTKAEFVN 307
I SP +TV E++I I+ +
Sbjct: 68 -----VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA--- 119
Query: 308 EVLETIELDGIK---DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
+ E E G+ D+ V LS +++R+ I L ++ +DEPT L +
Sbjct: 120 RIKELSERYGLPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404
A + ++ + G+TI+ H+ EV
Sbjct: 175 EADELFEILRRLAAEGKTIIFITHK--------LKEVMAI 206
|
Length = 501 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-10
Identities = 63/203 (31%), Positives = 90/203 (44%), Gaps = 31/203 (15%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDV---LAGRKTTGSMEGEIKIGGYP----K 257
+L V + +TALMG SG+GK+TLL V L + GE+ + G
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN--SKTKAEF---VNEVLET 312
V E RV Q P +++ E+V L ++N K+K E V LE
Sbjct: 77 VIELRRRVQ-MVFQIPNPIPNLSIFENVA------LGLKLNRLVKSKKELQERVRWALEK 129
Query: 313 IEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD----ARAAA 367
+L D +KD L G LS Q++RL IA L P ++ DEPT LD A+ +
Sbjct: 130 AQLWDEVKDRLDAPAG--KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187
Query: 368 IIMRAVKNVVDTGRTIVCTIHQP 390
+ + K++ TIV H P
Sbjct: 188 LFLELKKDM-----TIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-10
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQ 259
K + +++ ++ + L+G +GAGK+TLL ++ G R T+G EI G+P +
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG----EIIFDGHPWTR 66
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
+ ++ E ++ +T E++ L P+ ++EVL ++L
Sbjct: 67 KDLHKIGSLIESPPLYE-NLTARENLKVHTTLLGLPD-------SRIDEVLNIVDLTNTG 118
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
S ++RL IA+ L+ +P ++ +DEPT GLD
Sbjct: 119 KKKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-10
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR--VSGYCE 270
++ G + A+MG SGAGK+TLL+++AG S G IK+ + VS +
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS--GSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 271 QTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330
+ ++ +TV +++ L L P + K AE +V++ + GI D L +P
Sbjct: 78 ENNLF-AHLTVRQNI----GLGLHPGL--KLNAEQQEKVVDAAQQVGIADYLDRLP--EQ 128
Query: 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQ 389
LS QR+R+ +A LV I+ +DEP + LD ++ VK + RT++ H
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188
Query: 390 PS 391
S
Sbjct: 189 LS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE 260
+ LL D++ + G A++G +GAGK+TLL +LAG G + G +K+G V+
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKVG--ETVK- 386
Query: 261 TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
GY +Q H ++ +++V+ L E + V L G
Sbjct: 387 -----IGYFDQ---HRDELDPDKTVL--EELS---EGFPDGDEQEVRAYLGRF---GFTG 430
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
P V LS ++ RL +A L+ P+++ +DEPT LD
Sbjct: 431 EDQEKP-VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 34/201 (16%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PK-- 257
+L ++ ++PG ++G SG+GK+TL +L T G++ + G P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVDLAIADPAWL 529
Query: 258 -------VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
+QE + + +P E VI +A L A + S+ + EV
Sbjct: 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEH-VIHAAKLAGAHDFISELPQGYNTEVG 588
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E G N LS QR+R+ IA LV NP I+ DE T+ LD + A+IM
Sbjct: 589 EK--------------GAN-LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM 633
Query: 371 RAVKNVVDTGRTIVCTIHQPS 391
R ++ + GRT++ H+ S
Sbjct: 634 RNMREIC-RGRTVIIIAHRLS 653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 220 TALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF----ARVSGYCEQTDIH 275
TAL+G +GAGK+TLL L G G +K+ G E ++V + D
Sbjct: 34 TALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQ 91
Query: 276 SPQITVEESVIFSAW-LRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333
TV + V F + L E+ + V E L+ + + +D LS
Sbjct: 92 VFSSTVWDDVAFGPVNMGLDKDEVERR-----VEEALKAVRMWDFRDK-----PPYHLSY 141
Query: 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
Q+KR+ IA L +P +I +DEP LD R +M + + + G+T++ H
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATH 196
|
Length = 274 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 5e-10
Identities = 58/250 (23%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTT---- 232
L V ++L T ++ + V+ L+ G + ++G SG+GK+
Sbjct: 2 LEV--KNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKA 50
Query: 233 ---LLDVLAGRKTTGSMEGEIKIGG---YPKVQETFARVSG----YCEQTDIHS--PQIT 280
LL R GEI G ++ ++ G Q + S P +T
Sbjct: 51 IMGLLPKPNARIV----GGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMT 106
Query: 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV--------NGLS 332
+ + + L +K E +E +EL VGIP + LS
Sbjct: 107 IGDQIAEVLRLHG----KGLSKKEAKERAIELLEL-------VGIPDPERRLKSYPHELS 155
Query: 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPS 391
R+R+ IA+ L NP ++ DEPTT LD A I+ +K + + G ++ H
Sbjct: 156 GGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG 215
Query: 392 IDIFEAFDEV 401
+ + E D V
Sbjct: 216 V-VAEIADRV 224
|
Length = 316 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 5e-10
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 21/194 (10%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR 264
R L+DV ++ G TA +G +G+GK+T++ +L G +G +++
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDD--------TL 70
Query: 265 VSGYCEQTDIHSPQITV------EESVIFSAW----LRLAPEINSKTKAEFVNEVLETIE 314
++ + DI + V ES +F + P+ ++ E E +
Sbjct: 71 ITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLA 130
Query: 315 LDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
L GI +SL LS Q +R+ IA L P I+ +DEPT GLD + +M K
Sbjct: 131 LVGISESLFEKNPFE-LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFK 189
Query: 375 NVVDTGRTIVCTIH 388
+ +G TIV H
Sbjct: 190 KLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 59/197 (29%), Positives = 82/197 (41%), Gaps = 22/197 (11%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP--KVQETFARVS 266
DV ++ G L+G SG+GKTT L + R + GEI I G + R
Sbjct: 19 DVNLTIEEGEFLVLIGPSGSGKTTTLK-MINRLIEPT-SGEILIDGEDISDLDPVELRRK 76
Query: 267 -GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
GY Q P +TV E++ P++ K E ++L G+ S
Sbjct: 77 IGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDPSEYAD 130
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA--RAAA--IIMRAVKNVVDTGR 381
+ LS Q++R+ +A L A+P I+ MDEP LD R I K G+
Sbjct: 131 RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE---LGK 187
Query: 382 TIVCTIHQPSIDIFEAF 398
TIV H DI EA
Sbjct: 188 TIVFVTH----DIDEAL 200
|
Length = 309 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-10
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 18/133 (13%)
Query: 231 TTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS----GYCEQTDIHSPQITVEESVI 286
+TLL ++ G G I + G + ++ G Q P++TV E++
Sbjct: 1 STLLKLITGLLQPT--SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 287 FSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV 346
F K E LE + L D V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 347 ANPSIIFMDEPTT 359
P ++ +DEPT
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 7e-10
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 198 GFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGS--MEG 248
+ EK+ L ++ + +TAL+G SG GK+TLL D++ G + G +G
Sbjct: 10 FYGEKEA--LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG 67
Query: 249 EIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNE 308
+ V E RV G Q P +++ +++ + RL + K E V E
Sbjct: 68 QDIYDKKIDVVELRRRV-GMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEE 123
Query: 309 VLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367
L+ L D +KD L GLS Q++RL IA L P ++ +DEPT+ LD A
Sbjct: 124 SLKKAALWDEVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181
Query: 368 II 369
I
Sbjct: 182 KI 183
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-10
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 44/206 (21%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQ---ET 261
L +V+ ++RPG A++G G+GK+TLL +L G + T EG + + G Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT----EGSVLLDGVDIRQIDPAD 536
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAWLR-----LAPEINSKTKAEFVNEVLETIELD 316
R GY Q + +F LR AP + + E+L EL
Sbjct: 537 LRRNIGYVPQ-----------DPRLFYGTLRDNIALGAPYADDE-------EILRAAELA 578
Query: 317 GIK----------DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
G+ D +G G LS QR+ + +A L+ +P I+ +DEPT+ +D R+
Sbjct: 579 GVTEFVRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSE 637
Query: 367 AIIMRAVKNVVDTGRTIVCTIHQPSI 392
+K + G+T+V H+ S+
Sbjct: 638 ERFKDRLKRWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 31/182 (17%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR 264
LL +V+ +L PG L+G +GAGK+TLL +LAG S GE+ +V
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS--GEVTRPKGLRV------ 68
Query: 265 VSGYCEQTDIHSPQITVEESVI--FSAWLRLAPEIN--SKTKAEFVNEVLETI-----EL 315
GY Q P+ TV + VI F L E+ A+ +E+L + EL
Sbjct: 69 --GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 316 DG------IKDSL--VGIPG----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
DG +++L +G P V+ LS R+R+ +A L+ P ++ +DEPT LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 364 RA 365
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 9e-10
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ET 261
LL DV+ +LRPG + A++G +GAGK+TLL L+G + S GE+++ G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS--GEVRLNGRPLADWSPAE 73
Query: 262 FARVSGYCEQTDIHSP---QITVEESVIFSAWLRLAPEINSKTKA-EFVNEVLETIELDG 317
AR Q HS TVEE V + AP S+ + V L ++L
Sbjct: 74 LARRRAVLPQ---HSSLSFPFTVEEVV----AMGRAPHGLSRAEDDALVAAALAQVDLAH 126
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTTGLDARAAAIIMR 371
+ LS +++R+ +A L P + +DEPT+ LD ++R
Sbjct: 127 LAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR 181
Query: 372 AVKNVVDTGRTIVCTI 387
+ + V +
Sbjct: 182 LARQLAHERGLAVIVV 197
|
Length = 258 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 25/198 (12%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP---------K 257
L + +++ G +TA++G +GAGK+TL L G S G I G P K
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS--GRILFDGKPIDYSRKGLMK 79
Query: 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG 317
++E+ V + D +V + V F A PE + V+ L+ ++
Sbjct: 80 LRESVGMVF---QDPDNQLFSASVYQDVSFGAVNLKLPE---DEVRKRVDNALKRTGIEH 133
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
+KD + LS Q+KR+ IA LV P ++ +DEPT GLD + IM+ + +
Sbjct: 134 LKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188
Query: 378 -DTGRTIVCTIHQPSIDI 394
+ G TI+ H IDI
Sbjct: 189 KELGLTIIIATH--DIDI 204
|
Length = 283 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 42/198 (21%)
Query: 188 IDTPLEMRERG------FTEKKLRL-LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG- 239
L++ ++G + L + + D + + G + +MG+SG+GK+TL+ +L
Sbjct: 18 PKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL 77
Query: 240 -RKTTGSMEGEIK-IGGYPK-------------VQETFARVSGYCEQTDIHSPQITVEES 284
T G + + K I V ++FA + P TV E+
Sbjct: 78 IEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL-----------PHRTVLEN 126
Query: 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVE 344
V F ++ P+ + +A E LE + L+G D N LS ++R+ +A
Sbjct: 127 VAFGLEVQGVPKAEREERAL---EALELVGLEGYADKYP-----NELSGGMQQRVGLARA 178
Query: 345 LVANPSIIFMDEPTTGLD 362
L +P I+ MDE + LD
Sbjct: 179 LANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 41/191 (21%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR 264
+L V +++ G + ALMG +G+GK+TL + G EGEI G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 265 VSGYCEQTDIHSPQITVEESV---IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
DI + EE IF A+ PEI A+F+ V E
Sbjct: 64 -------EDI--TDLPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE---------- 103
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGR 381
G S ++KR I L+ P + +DEP +GLD A ++ + + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 382 TIVCTIHQPSI 392
+++ H +
Sbjct: 156 SVLIITHYQRL 166
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 2e-09
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 23/184 (12%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYP--KVQETFARVSGY 268
+L G L + G +GAGKT+LL +LAG R GE+ G P + ++ + + Y
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRDEYHQDLLY 78
Query: 269 CEQTDIHSPQITVEESVIFSAW--LRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
H P I E +A LR ++ E + E L + L G +D V
Sbjct: 79 LG----HQPGIKTE----LTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQ- 129
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
LS Q++R+ +A + + +DEP T +D + A + + + G ++ T
Sbjct: 130 ----LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILT 185
Query: 387 IHQP 390
HQ
Sbjct: 186 THQD 189
|
Length = 204 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 61/195 (31%), Positives = 91/195 (46%), Gaps = 24/195 (12%)
Query: 189 DTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRK 241
T LE+R + L+D++ + +TA +G SG GK+TLL D++ +
Sbjct: 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 242 TTGSMEGEIKIGG---YPK---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP 295
EGEI++ G Y K V E RV G Q P+ ++ E+V++ LRL
Sbjct: 83 I----EGEIRLDGQNIYDKKVDVAELRRRV-GMVFQRPNPFPK-SIYENVVYG--LRLQG 134
Query: 296 EINSKTKAEFVNEVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354
N + E V L L D +KD L GLS Q++RL IA + P ++ +
Sbjct: 135 INNRRVLDEAVERSLRGAALWDEVKDRL-HENAF-GLSGGQQQRLVIARAIAIEPEVLLL 192
Query: 355 DEPTTGLDARAAAII 369
DEPT+ LD + I
Sbjct: 193 DEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258
F+ + + +D+T G +TA++G SG+GK+TLL+++AG +T S G + I G V
Sbjct: 8 FSYGEQPMHFDLT--FAQGEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLING---V 60
Query: 259 QETFAR-----VSGYCEQTDIHSPQITVEESVIF--SAWLRLAPEINSKTKAEFVNEVLE 311
T A VS ++ ++ +TVE++V S L+L E + L
Sbjct: 61 DVTAAPPADRPVSMLFQENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEV-----ALA 114
Query: 312 TIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD-ARAAAIIM 370
+ L G++ L G LS +R+R+ +A LV + ++ +DEP LD A A ++
Sbjct: 115 RVGLAGLEKRLPG-----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD 169
Query: 371 RAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
+ +T T++ HQP D V
Sbjct: 170 LVLDLHAETKMTVLMVTHQPE-DAKRLAQRV 199
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-09
Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFA 263
L ++G +R G + L+G +GAGK+TLL +AG S G I+ G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSATELA 71
Query: 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
R Y Q + V W L KT+ E +N+V + LD D L
Sbjct: 72 RHRAYLSQQQTPPFAMPV--------WHYLTLHQPDKTRTELLNDVAGALALD---DKLG 120
Query: 324 GIPGVNGLSTE--QRKRLT---IAVELVANPS--IIFMDEPTTGLDARAAAIIMRAVKNV 376
N LS QR RL + + ANP+ ++ +DEP LD + + R + +
Sbjct: 121 --RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 377 VDTGRTIVCTIH 388
G IV + H
Sbjct: 179 CQQGLAIVMSSH 190
|
Length = 248 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 65/202 (32%), Positives = 96/202 (47%), Gaps = 32/202 (15%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGS--MEGEIKIGGY 255
+ L+DV + +TA +G SG GK+T L D + G + TG ++GE
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92
Query: 256 PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN--SKTKAEFVNEVLETI 313
V E ARV G Q P+ ++ E+V + P I+ +++KAE V ++
Sbjct: 93 LDVVELRARV-GMVFQKPNPFPK-SIYENVAY------GPRIHGLARSKAELDEIVETSL 144
Query: 314 ELDGI----KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
G+ KD L PG GLS Q++RL IA + +P +I MDEP + LD A A
Sbjct: 145 RKAGLWEEVKDRL-HEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATA-- 200
Query: 370 MRAVKNVVDTGR---TIVCTIH 388
V+ ++D R TIV H
Sbjct: 201 --KVEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 3e-09
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 42/197 (21%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
L D+ + G L A++G G+GK++LL L G + G + + G + A
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE--LEKLSGSVSVPG------SIA-- 69
Query: 266 SGYCEQTDIHSPQI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD-- 320
Y Q P I T+ E+++F + E +V++ L+ D
Sbjct: 70 --YVSQE----PWIQNGTIRENILFGK------PFDE----ERYEKVIKACALE--PDLE 111
Query: 321 -------SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR-AAAIIMRA 372
+ +G G+N LS Q++R+++A + ++ I +D+P + +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 373 VKNVVDTGRTIVCTIHQ 389
+ ++ +T + HQ
Sbjct: 171 ILGLLLNNKTRILVTHQ 187
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA-------RVSGY 268
G+ TAL G SG+GKT+L++++AG T EG I++ G V R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAG--LTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328
Q P TV ++ + W + + + + + L GI+ L PG
Sbjct: 81 VFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDRYPGT 128
Query: 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD-ARAAAII 369
LS +++R+ I L+ P ++ MDEP LD R I+
Sbjct: 129 --LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL 168
|
Length = 352 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-09
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 197 RGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGG- 254
+G +K R L ++ + G ++G +GAGK+TLL+ +AG K T G+I I G
Sbjct: 13 KGTPLEK-RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS---GQILIDGV 68
Query: 255 ----YPKVQ--ETFARV-----SGYCEQTDIHSPQITVEESVIFSAWLR-----LAPEIN 298
+ ARV +G P++T+EE++ A R L+ +N
Sbjct: 69 DVTKKSVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALN 120
Query: 299 SKTKAEFVNEVLETIELDGIKDSL---VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355
+ ++ F L + L G+++ L +G+ LS QR+ L++ + + P I+ +D
Sbjct: 121 ERRRSSFRER-LARLGL-GLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLD 173
Query: 356 EPTTGLDARAAAIIMRAVKNVV 377
E T LD + A +M +V
Sbjct: 174 EHTAALDPKTAEFVMELTAKIV 195
|
Length = 263 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 5e-09
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVL-------AGRKTTGSM--EGEIKIGGYPK 257
L ++ S+ +TA++G SG GK+T + L K TG M G + G
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-D 316
+ E + G Q PQ ++ ++V + R+ N K E V + L+ + L D
Sbjct: 88 LVELRKNI-GMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWD 143
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+KD L + LS Q++RL IA L NP ++ MDEPT+ LD
Sbjct: 144 EVKDRL-HTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 6e-09
Identities = 63/202 (31%), Positives = 92/202 (45%), Gaps = 27/202 (13%)
Query: 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY---- 255
T K+ L DV+ S+ G + ++G SGAGK+TL+ + G + S G + + G
Sbjct: 14 TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS--GSVLVDGTDLTL 71
Query: 256 --PKVQETFARVSGYCEQTDIH-----SPQITVEESVIFSAWLRLAPEINSKTKAEFVNE 308
K R G Q H S TV E+V L EI KAE
Sbjct: 72 LSGKELRKARRRIGMIFQ---HFNLLSSR--TVFENVA------LPLEIAGVPKAEIEER 120
Query: 309 VLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 368
VLE +EL G++D P LS Q++R+ IA L NP ++ DE T+ LD
Sbjct: 121 VLELLELVGLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178
Query: 369 IMRAVKNV-VDTGRTIVCTIHQ 389
I+ ++++ + G TIV H+
Sbjct: 179 ILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 7e-09
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 22/201 (10%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR 264
+ L+ V ++ G + AL+G SG+GK+TLL L+G TG I + + R
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL-ITGDKSAGSHIELLGRTVQREGR 76
Query: 265 VSGYCEQTDIHSPQI----------TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 314
++ ++ ++ I +V E+V+ A L +T + +
Sbjct: 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA---LGSTPFWRTCFSWFTREQKQRA 133
Query: 315 LDGIKDSLVGIPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
L + + VG+ V+ LS Q++R+ IA L+ +I DEP LD +A I+
Sbjct: 134 LQAL--TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 370 MRAVKNVVDT-GRTIVCTIHQ 389
M ++++ G T+V T+HQ
Sbjct: 192 MDTLRDINQNDGITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 7e-09
Identities = 56/214 (26%), Positives = 94/214 (43%), Gaps = 31/214 (14%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTG 244
++ R+ F L ++ + + A +G SG GK+T L D++ +
Sbjct: 4 IDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR--- 60
Query: 245 SMEGEIKIGG---YPKVQET--FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINS 299
+EGEI+I G Y K + + G Q P+ ++ E+V + LR +N
Sbjct: 61 -LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LR----VNG 112
Query: 300 KTKAEFVNE-VLETIE----LDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354
F+ + V ET++ D +KD L LS Q++RL IA + +PS++ M
Sbjct: 113 VKDNAFIRQRVEETLKGAALWDEVKDKLK--ESAFALSGGQQQRLCIARAMAVSPSVLLM 170
Query: 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
DEP + LD + A + + + TIV H
Sbjct: 171 DEPASALDPISTAKVEELIHE-LKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 8e-09
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 36/207 (17%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME---GEIKIGGYP------- 256
+ DV+ +R G + +MG+SG+GK+TLL R +E G++ I G
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMSRK 94
Query: 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 316
+++E + Q+ P TV E+V F ++ P + +A E LE + L+
Sbjct: 95 ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAA---EALELVGLE 151
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
G + + LS ++R+ +A L +P I+ MDE + LD +I R +++
Sbjct: 152 GWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALD----PLIRREMQDE 202
Query: 377 V-----DTGRTIVCTIHQPSIDIFEAF 398
+ + +TIV H D+ EA
Sbjct: 203 LLRLQAELQKTIVFITH----DLDEAL 225
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-09
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 17/192 (8%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TGSMEGEIKIGGYPKV-------Q 259
DV+ L PG + ++G SG+GK+TLL LAGR G+ ++ G ++ +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 260 ETFARVS-GYCEQTDIHSPQITVEESV-IFSAWLRLAPEINSKTKAEFVNEVLETIELDG 317
R G+ Q ++ V I + + +A + LE +E+D
Sbjct: 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAT-AQDWLEEVEID- 138
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN-V 376
+ +P S ++RL IA LV P ++FMDEPT GLD A ++ ++ V
Sbjct: 139 -PTRIDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 377 VDTGRTIVCTIH 388
D G ++ H
Sbjct: 196 RDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-09
Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 26/198 (13%)
Query: 188 IDTPLEMRERG--FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLA 238
+ +P +M RG F + L+D++ +TAL+G SG GK+T L D++
Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP 60
Query: 239 GRKTTGSMEGEIKIGGYP------KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292
G +EGEI + G V E RV G Q P+ ++ E+V + LR
Sbjct: 61 G----ARVEGEILLDGENIYDPHVDVVELRRRV-GMVFQKPNPFPK-SIFENVAYG--LR 112
Query: 293 LAPEINSKTKAEFVNEVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSI 351
+ + AE V L L D +KD L GLS Q++RL IA L P +
Sbjct: 113 VNGVKDKAYLAERVERSLRHAALWDEVKDRLH--ESALGLSGGQQQRLCIARALAVEPEV 170
Query: 352 IFMDEPTTGLDARAAAII 369
+ MDEP + LD A I
Sbjct: 171 LLMDEPASALDPIATQKI 188
|
Length = 253 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-08
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 193 EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI 252
E+ F L +V+ +L+ G + AL+G +G+GK+TLL +AG S GEI I
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS--GEILI 58
Query: 253 GGYPKVQETFARVS---GYCEQ 271
G + + GY Q
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 33/183 (18%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L DV+ +L PG +TAL+G SG+GK+T++ +L G++ + G P +
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALL--ENFYQPQGGQVLLDGKP--------I 78
Query: 266 SGYCEQTDIHSPQITV-EESVIFSAWLR-------------LAPEINSKTKA-EFVNEVL 310
S Y E +HS V +E V+F+ L+ E K A F++E+
Sbjct: 79 SQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELA 137
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
+ + VG G + LS Q++R+ IA L+ NP ++ +DE T+ LDA + +
Sbjct: 138 SGYDTE------VGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190
Query: 371 RAV 373
+A+
Sbjct: 191 QAL 193
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 1e-08
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 37/198 (18%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L +++ S++PG ++G +G+GK++L +LA + G I I G
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGVD---------- 67
Query: 267 GYCEQTDIHS--------PQITVEESVIFSAWLR--LAPEINSKTKAEFVNEVLETIELD 316
+ +H PQ + V+FS +R L P + E + + LE + L
Sbjct: 68 --ISKIGLHDLRSRISIIPQ----DPVLFSGTIRSNLDPF-GEYSDEE-LWQALERVGLK 119
Query: 317 GIKDSLVG------IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
+SL G G LS QR+ L +A L+ I+ +DE T +D A+I
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 371 RAVKNVVDTGRTIVCTIH 388
+ ++ T++ H
Sbjct: 180 KTIRE-AFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 30/160 (18%)
Query: 216 PGV-LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA----------- 263
PG +TA+ G SG+GKTTL+ ++AG T EGEI + G T
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAG--LTRPDEGEIVLNG-----RTLFDSRKGIFLPPE 73
Query: 264 -RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
R GY Q P ++V ++ + E + IEL GI L
Sbjct: 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFE--------RVIELLGIGHLL 125
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+PG LS +++R+ I L+++P ++ MDEP LD
Sbjct: 126 GRLPG--RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 43/240 (17%)
Query: 175 EPLTVAFQDLKY-------YIDTPLEMRERGFTEKKLRLLYDVTGSLRPGV--------- 218
EPLT +D ++ + + L G K L +++ +G RP V
Sbjct: 898 EPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVKNLVKIFEPSG--RPAVDRLNITFYE 955
Query: 219 --LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQET---FARVS-GYCEQT 272
+TA +G +GAGKTT L +L G S G + +GG K ET R S G C Q
Sbjct: 956 NQITAFLGHNGAGKTTTLSILTGLLPPTS--GTVLVGG--KDIETNLDAVRQSLGMCPQH 1011
Query: 273 DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332
+I +TV E ++F A L+ ++ + E +LE L ++ LS
Sbjct: 1012 NILFHHLTVAEHILFYAQLKGRSWEEAQLEME---AMLEDTGLHHKRNE-----EAQDLS 1063
Query: 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV---DTGRTIVCTIHQ 389
+++L++A+ V + ++ +DEPT+G+D + R++ +++ +GRTI+ + H
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS----RRSIWDLLLKYRSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 38/200 (19%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ------- 259
L + ++RPG AL+G SGAGK+TL +L + G I + G Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLR----------LAPEINSKTKAEFVNEV 309
A V PQ + V+F+A + E+ + +A +E
Sbjct: 414 ARMALV-----------PQ----DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEF 458
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
+ L D+ +G GV LS QR+R+ IA ++ + I+ +DE T+ LDA + ++
Sbjct: 459 IS--ALPEGYDTYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV 515
Query: 370 MRAVKNVVDTGRTIVCTIHQ 389
+A++ ++ GRT + H+
Sbjct: 516 QQALETLM-KGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 21/190 (11%)
Query: 182 QDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241
Q+ + DT +R F LL+ ++ + G +T L+G +G+GK+TLL +L GR
Sbjct: 2 QEYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRH 60
Query: 242 TTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVEESVIF------SAWLR 292
S EGEI + P + FAR Y Q + +TV E V A R
Sbjct: 61 QPPS-EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGR 119
Query: 293 LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 352
K V E I L G+K + V+ LS +R+R IA+ + + +
Sbjct: 120 FGAADREK--------VEEAISLVGLKPLAHRL--VDSLSGGERQRAWIAMLVAQDSRCL 169
Query: 353 FMDEPTTGLD 362
+DEPT+ LD
Sbjct: 170 LLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 2e-08
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSM---EGEIKIGGYPKV 258
DV+ +TA++G SG GK+T+L D++ + TG + + +I G V
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DG 317
+ R G Q P +++ ++VI A +L +N E V L+ + L D
Sbjct: 82 --SIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+KD L LS Q++RL IA + P +I MDEP + LD
Sbjct: 138 VKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 2e-08
Identities = 57/216 (26%), Positives = 90/216 (41%), Gaps = 29/216 (13%)
Query: 198 GFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGY 255
F + +L + +T L+G +G GK+TL L+G R G++ + K Y
Sbjct: 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67
Query: 256 PK-----VQETFARVSGYCEQ----TDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFV 306
K +++ A V EQ TDI S + FS PE V
Sbjct: 68 SKRGLLALRQQVATVFQDPEQQIFYTDIDS-------DIAFSLRNLGVPE---AEITRRV 117
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+E L ++ + + LS Q+KR+ IA LV + +DEPT GLD
Sbjct: 118 DEALTLVDAQHFRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 367 AIIMRAVKNVVDTGRTIVCTIHQPSID-IFEAFDEV 401
++ ++ +V G ++ + H ID I+E D V
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSH--DIDLIYEISDAV 206
|
Length = 271 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 31/190 (16%)
Query: 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA--RVSG 267
V+ + G + +G +GAGK+T + ++ G S G +++ G +Q R G
Sbjct: 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS--GSVQVCGEDVLQNPKEVQRNIG 78
Query: 268 YCEQTDIHSP---QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324
Y + H+P + V E + F A + K + V E++E LVG
Sbjct: 79 YLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIE----------LVG 122
Query: 325 IPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV-VD 378
+ + LS R+R+ +A L+ +P ++ +DEPTTGLD I +KN+ D
Sbjct: 123 LRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 379 TGRTIVCTIH 388
+TI+ + H
Sbjct: 183 --KTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-08
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
LL ++ L G L L G +GAGKTTLL ++AG GEI ++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK--GEILFERQSIKKDLCTYQ 73
Query: 266 SGYC---EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
C ++ I +P +T+ E+ ++ +I+ A + E+ L+ + D
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT 382
G+ LS+ Q++++ + ++ + +DEP LD + I+ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 383 IVCTIHQ 389
++ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 22/180 (12%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGY 255
K + L V+ P +TAL+G SG+GK+TLL D+ TGS I G+
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGS----IVYNGH 72
Query: 256 ----PKVQETFARVS-GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
P+ R G Q P +++ E+V++ LRL + + E V + L
Sbjct: 73 NIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKDKQVLDEAVEKSL 129
Query: 311 ETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
+ + D +KD L GLS Q++R+ IA L +P II +DEPT+ LD +A I
Sbjct: 130 KGASIWDEVKDRLHD--SALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 28/201 (13%)
Query: 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA 263
L L ++ + G LT ++G G GK++LL + G T +EG++ + + +F
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFE 71
Query: 264 RVSGYCEQTDIHSPQ------ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG 317
+ ++ Q TVEE++ F + P + KA V + L
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGS-----PFNKQRYKA-----VTDACSLQP 121
Query: 318 IKDSL-------VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
D L +G G+N LS QR+R+ +A L N +I+F+D+P + LD + +M
Sbjct: 122 DIDLLPFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLM 180
Query: 371 RA--VKNVVDTGRTIVCTIHQ 389
+ +K + D RT+V H+
Sbjct: 181 QEGILKFLQDDKRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 30/222 (13%)
Query: 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG-YPKV 258
E +L L +++ + + ++G SG+GK+TL+ G S G I++G Y
Sbjct: 35 QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGD 92
Query: 259 QETFARVSGYCEQTDIHS--------------PQI-----TVEESVIFSAWLRLAPEINS 299
++ + I + P+ T+E+ ++F + +
Sbjct: 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEA 152
Query: 300 KTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359
K A+F + G+ DS + GLS Q++R+ IA L P I+ DEPT
Sbjct: 153 KKLAKFYLNKM------GLDDSYLERSPF-GLSGGQKRRVAIAGILAIQPEILIFDEPTA 205
Query: 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401
GLD + +M+ + + +T+ H + E DEV
Sbjct: 206 GLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEV 246
|
Length = 320 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 35/208 (16%)
Query: 168 GKMVLPFEPLTVAFQDLKYYIDTPLEMRERGF---TEKKLRLLYDVTGSLRPGVLTALMG 224
++L E L V F + GF T LR + ++ +LR G L+G
Sbjct: 273 APVLLEVEDLRVWF------------PIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVG 320
Query: 225 VSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGYPKVQETFARVSGYCEQTDI-------- 274
SG+GK+TL G +GEI+ G + + + +
Sbjct: 321 ESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS 375
Query: 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334
SP++TV + +I P++++ + + V E LE + LD + P + S
Sbjct: 376 LSPRMTVGQ-IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP--ATRNRYP--HEFSGG 430
Query: 335 QRKRLTIAVELVANPSIIFMDEPTTGLD 362
QR+R+ IA L+ P +I +DEPT+ LD
Sbjct: 431 QRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 4e-08
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF 262
+L ++ S+ G + ++G SG+GK+TLL L G + S G I + G +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS--GSITVDGEDVGDKK- 70
Query: 263 ARVSGYCEQTDIHS---------------PQITVEESVIFSAWLRLAPEINSKT-KAEFV 306
DI P +TV E+V LAP K KAE
Sbjct: 71 ----------DILKLRRKVGMVFQQFNLFPHLTVLENVT------LAPVKVKKLSKAEAR 114
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+ LE +E G+ D P LS Q++R+ IA L +P ++ DEPT+ LD
Sbjct: 115 EKALELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELV 172
Query: 367 AIIMRAVKNVVDTGRTIVCTIHQ 389
++ +K++ + G T++ H+
Sbjct: 173 GEVLDVMKDLAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 26/176 (14%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L ++ ++ G AL+G +G GK+TLL +L R +GEI + G P ++
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQ-QGEILLNGQP--------IA 405
Query: 267 GYCEQTDIHSPQITVEESV-IFSAWLR--LAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
Y E + V + V +FSA LR L + + + EVL+ + L+ + L
Sbjct: 406 DYSEAA-LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALI-EVLQQVGLEKL---LE 460
Query: 324 GIPGVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR 371
G+N LS +++RL IA L+ + ++ +DEPT GLDA I+
Sbjct: 461 DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILE 516
|
Length = 574 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 21/162 (12%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGY 268
DV+ ++ G + AL+G SG GK+TLL +LAG + G+I + G + V Y
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDG-----VDLSHVPPY 89
Query: 269 CE------QTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
Q+ P +TVE+++ F + + KAE + V E + L +++
Sbjct: 90 QRPINMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEFA 143
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
P + LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 144 KRKP--HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-08
Identities = 63/200 (31%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 181 FQDL--KYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238
FQ + +Y TP E R LYDV S+ G A++G +G+GK+TLL L
Sbjct: 5 FQKVEHRYQYKTPFERRA----------LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54
Query: 239 G--RKTTGSM---EGEIKIGGYPKVQETFARVSGYCEQTDIHSPQI---TVEESVIFSAW 290
G + T+G++ E I G K + + G Q H Q+ TVE+ + F
Sbjct: 55 GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH--QLFEETVEKDICFGPM 112
Query: 291 LRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS 350
E ++K KA E IEL G+ + L+ LS Q +R+ IA L P
Sbjct: 113 NFGVSEEDAKQKAR------EMIELVGLPEELLARSPFE-LSGGQMRRVAIAGVLAMEPE 165
Query: 351 IIFMDEPTTGLDARAAAIIM 370
++ +DEPT GLD + +M
Sbjct: 166 VLVLDEPTAGLDPKGRKEMM 185
|
Length = 290 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 13/192 (6%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYC 269
+L G AL+G SGAGKT+LL+ L G +G +KI G + E++ + +
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL---PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 270 EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329
Q + P T+ ++V+ ++ + +V+E L + G+ D+ +G
Sbjct: 429 GQ-NPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLP-QGL-DTPIG-DQAA 484
Query: 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389
GLS Q +RL +A L+ ++ +DEPT LDA + ++M+A+ T++ T HQ
Sbjct: 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT-HQ 543
Query: 390 PSIDIFEAFDEV 401
++ +D++
Sbjct: 544 --LEDLAQWDQI 553
|
Length = 588 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 60/211 (28%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYP-- 256
+L DV+ ++ G A++G SG+GK+T+L DV +G I I G
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 257 KV-QETFARVSGYCEQTDIHSPQITV------------------EESVIFSAWLRLAPEI 297
+V ++ R G PQ TV +E VI +A
Sbjct: 67 EVTLDSLRRAIGVV-------PQDTVLFNDTIGYNIRYGRPDATDEEVIEAA-------- 111
Query: 298 NSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357
KA +++ + DG D++VG G+ LS +++R+ IA ++ NP I+ +DE
Sbjct: 112 ----KAAQIHDKIMRFP-DGY-DTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEA 164
Query: 358 TTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
T+ LD I A+++V GRT + H
Sbjct: 165 TSALDTHTEREIQAALRDVS-KGRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 30/158 (18%)
Query: 224 GVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY------PKVQETFARVSGYCEQTDIHSP 277
G SG GK+TLL ++AG + S G++ IG P R G Q+ P
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITS--GDLFIGEKRMNDVPPA-----ERGVGMVFQSYALYP 88
Query: 278 QITVEESVIFSAWLRLA----PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333
++V E++ F L+LA EIN + VN+V E ++L + D P LS
Sbjct: 89 HLSVAENMSFG--LKLAGAKKEEINQR-----VNQVAEVLQLAHLLDRK---P--KALSG 136
Query: 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR 371
QR+R+ I LVA PS+ +DEP + LDA A + MR
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 8e-08
Identities = 58/217 (26%), Positives = 89/217 (41%), Gaps = 32/217 (14%)
Query: 190 TPL-EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG 248
TP M G + + L V ++ PG + AL+G +GAGK+TL+ VL+G G
Sbjct: 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK--G 60
Query: 249 EIKIGG--YPKVQETFARVSG----YCEQTDIHSPQITVEESVIFSAWLRL-------AP 295
I I Y K+ A G Y E + I ++TV E++ R
Sbjct: 61 TITINNINYNKLDHKLAAQLGIGIIYQELSVID--ELTVLENLYIG---RHLTKKVCGVN 115
Query: 296 EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355
I+ + +L + L D V LS ++ L IA L+ + +I MD
Sbjct: 116 IIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMD 170
Query: 356 EPTTGLDARAAA---IIMRAVKNVVDTGRTIVCTIHQ 389
EPT+ L + +IM ++ G IV H+
Sbjct: 171 EPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHK 204
|
Length = 510 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 19/196 (9%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF---- 262
L DV+ S+ G A++G +G+GK+TL +L G + G I +GG +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA--GTITVGGMVLSEETVWDVR 80
Query: 263 ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
+V + D TV++ V F E + E V V + + G++D L
Sbjct: 81 RQVGMVFQNPDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQALRQVGMEDFL 134
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT 382
P + LS Q++R+ IA L P II +DE T+ LD R ++ V+ + +
Sbjct: 135 NREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI 192
Query: 383 IVCTI-HQPSIDIFEA 397
V +I H D+ EA
Sbjct: 193 TVLSITH----DLDEA 204
|
Length = 279 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 9e-08
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP----KVQETFARVSGY 268
++ PG AL+G SG GK+T++ +L + GEI + G ++ +++ G
Sbjct: 25 TIPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNLRWLRSQI-GL 81
Query: 269 CEQTDIHSPQI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
Q P + T+ E++ + E+ K +++ + ++ DG D+LVG
Sbjct: 82 VSQ----EPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLP-DGY-DTLVGE 135
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC 385
G LS Q++R+ IA L+ NP I+ +DE T+ LDA + ++ A+ + GRT +
Sbjct: 136 RGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIV 193
Query: 386 TIH 388
H
Sbjct: 194 IAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGS--MEGEIKIGGYPK 257
L + + +TAL+G SG GK+T L D++ K G ++G+
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINS-KTKAEFVNEVLETIEL- 315
V + RV G Q P +++ ++V + P + K K + ++E++E L
Sbjct: 79 VNQLRKRV-GMVFQQPNPFP-MSIYDNVAY------GPRTHGIKDKKK-LDEIVEK-SLK 128
Query: 316 -----DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
D +KD L GLS Q++RL IA L P ++ MDEPT+ LD
Sbjct: 129 GAALWDEVKDRLK--KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 1e-07
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIK 251
+ EK+ L D+ + +TAL+G SG GK+T L D+++ K +EGE+
Sbjct: 14 YGEKQA--LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK----IEGEVL 67
Query: 252 IGG---YPK---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEF 305
+ G Y K V E RV G Q P +++ ++V + R+ + K +
Sbjct: 68 LDGKNIYDKDVDVVELRKRV-GMVFQKPNPFP-MSIYDNVAYGP--RIHGIKDKKELDKI 123
Query: 306 VNEVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
V L+ L D +KD L LS Q++RL IA + P +I MDEPT+ LD
Sbjct: 124 VEWALKKAALWDEVKDDLK--KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 60/230 (26%), Positives = 101/230 (43%), Gaps = 47/230 (20%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK 251
LEM+ T ++ L +V+ +R G + +L G +GAGK+TL+ VL+G G+ EGEI
Sbjct: 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEII 65
Query: 252 IGGYPKVQETFARVSGYCEQTD-----IHS-----PQITVEESVIFSAWLRLAPEINSKT 301
G + S + IH +++V E+ IF L EI T
Sbjct: 66 FEGEEL------QASNIRDTERAGIAIIHQELALVKELSVLEN-IF-----LGNEI---T 110
Query: 302 KAEFVN---------EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 352
++ ++L ++LD + VG G+ Q++ + IA L ++
Sbjct: 111 PGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLG-----QQQLVEIAKALNKQARLL 165
Query: 353 FMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402
+DEPT L A+++ ++++ G I C I I +EVK
Sbjct: 166 ILDEPTASLTESETAVLLDIIRDLKAHG--IAC------IYISHKLNEVK 207
|
Length = 506 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA--- 263
L +++ L G AL+G +G+GK+TL+ S G I I GY ET
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS--GTITIAGYHITPETGNKNL 80
Query: 264 -----RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318
+VS + + + TV + V F P+ ++ E + L+ ++ G+
Sbjct: 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEF------GPKNFGFSEDEAKEKALKWLKKVGL 134
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
+ L+ LS Q +R+ IA + P I+ +DEP GLD +M+ K+
Sbjct: 135 SEDLISKSPFE-LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK 193
Query: 379 TGRTIVCTIHQPSIDIFEAFDEV 401
G T++ H D+ E D+V
Sbjct: 194 AGHTVILVTHNMD-DVAEYADDV 215
|
Length = 287 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 27/160 (16%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQ 271
+++ G + L+G SG GKTT+L ++AG K T EG+I I G E S +Q
Sbjct: 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDG-----EDVTHRS--IQQ 77
Query: 272 TDI----HS----PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
DI S P +++ E+V + L++ + + + + V E LE ++L G +D V
Sbjct: 78 RDICMVFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV 134
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
+ +S Q++R+ +A L+ P ++ DEP + LDA
Sbjct: 135 -----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 34/158 (21%)
Query: 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS-- 276
LT L+G SG GKTT+L ++AG +T S G I + G + V E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPDS--GRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 277 ------PQITVEESVIFSAWLRL----APEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
P +TV E+V F LR+ A EI + V E L ++L+
Sbjct: 93 QSYALFPHMTVFENVAFG--LRMQKTPAAEITPR-----VMEALRMVQLEEFAQR----- 140
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
+ LS Q++R+ IA +V P ++ +DE + LD +
Sbjct: 141 KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 195 RERGFTEKKLRL--LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI 252
R G K R L +V+ S+ G L+G SG GK+TL +L G + G +
Sbjct: 13 RTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ--GTVSF 70
Query: 253 GGYPKVQ------ETFARVSGYCEQTDIHS--PQITVEESVIFSAWLRLAPEINSKTKAE 304
G Q F R Q + P++TV + I LR ++ +
Sbjct: 71 RGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQ--IIGEPLRHLTSLDESEQKA 128
Query: 305 FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
+ E+L+ + L + +P LS Q +R+ IA L P +I +DE + LD
Sbjct: 129 RIAELLDMVGLR--SEDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184
Query: 365 AAAIIMRAVK 374
A+I+ ++
Sbjct: 185 LQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 47/199 (23%), Positives = 95/199 (47%), Gaps = 17/199 (8%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ- 259
E+++ +L ++ + G + A++G SG+GK+TL+++L S G ++ G
Sbjct: 18 EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS--GTYRVAGQDVATL 75
Query: 260 --ETFARVS----GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 313
+ A++ G+ Q +T ++V A + + K + E+L+ +
Sbjct: 76 DADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRLLRAQELLQRL 132
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
G++D + P + LS Q++R++IA L+ +I DEPT LD+ + +M +
Sbjct: 133 ---GLEDRVEYQP--SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAIL 187
Query: 374 KNVVDTGRTIVCTIHQPSI 392
+ D G T++ H P +
Sbjct: 188 HQLRDRGHTVIIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 52/187 (27%), Positives = 75/187 (40%), Gaps = 50/187 (26%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-------KVQ 259
L DV+ + PG A++G SG+GK+TLL +L G +T S G + G V+
Sbjct: 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES--GSVFYDGQDLAGLDVQAVR 526
Query: 260 ETFARV-------SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET 312
V SG + +T++E AW E
Sbjct: 527 RQLGVVLQNGRLMSGSIFENIAGGAPLTLDE-----AW--------------------EA 561
Query: 313 IELDGIKDSLVGIP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
+ G+ + + +P G LS QR+RL IA LV P I+ DE T+ LD
Sbjct: 562 ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 364 RAAAIIM 370
R AI+
Sbjct: 622 RTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVL-------AGRKTTGSME--GEIKIGGYPKVQETFAR 264
++PG + A++G SG+GKTTLL + AG G + + + +
Sbjct: 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQ 85
Query: 265 VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFV----NEVLETIELDGIKD 320
G+ Q P TV E++I P I E E+L + L G +
Sbjct: 86 HVGFVFQNFNLFPHRTVLENII------EGPVIVKGEPKEEATARARELLAKVGLAGKET 139
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
S P LS Q++R+ IA L P +I DEPT+ LD ++ ++ +
Sbjct: 140 SY---P--RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK 194
Query: 381 RTIVCTIHQPS 391
RT+V H+ S
Sbjct: 195 RTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 36/224 (16%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI-------KIGG 254
+L +++ ++ G + ++G SGAGK+ L+ VL G G I + G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 255 YPKVQETFARVSGYCEQT------DIHSPQITV-------------------EESVIFSA 289
Y + C T D + + + +
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 290 WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349
L EI + K E V ++ IE+ + + I LS +++R+ +A +L P
Sbjct: 131 VLEALEEIGYEGK-EAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKEP 187
Query: 350 SIIFMDEPTTGLDARAAAIIMRAVKN-VVDTGRTIVCTIHQPSI 392
+ DEPT LD + A ++ A++ V +G ++V T H P +
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 17/216 (7%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK 251
LEM+ T ++ L + +RPG L G +GAGK+TL+ +L+G G+ +GEI
Sbjct: 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIY 61
Query: 252 IGGYP----KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL-APEINSKTKAEFV 306
G P +++T Q P+++V E++ + L +
Sbjct: 62 WSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA 121
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+L ++LD + V Q++ + IA L ++ +DEP++ L +
Sbjct: 122 KNLLRELQLDADNVTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKET 177
Query: 367 AIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402
I++ ++++ + C + I +EVK
Sbjct: 178 EILLDIIRDL--KAHGVAC------VYISHKLNEVK 205
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 26/196 (13%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYPKVQETFARV 265
L +T +L PG + AL+G SG+GK+T+ +L + TG G++ + G P VQ
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDGVPLVQ------ 547
Query: 266 SGYCEQTDIHSPQITV-EESVIFSAWLR--LAPEINSKTKAEFVNEVLETIELDGIK--- 319
+ +H V +E V+FS +R +A + E + D I
Sbjct: 548 ---YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFP 604
Query: 320 ---DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
D+ VG G + LS Q++R+ IA LV P ++ +DE T+ LDA ++ +
Sbjct: 605 NGYDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR- 662
Query: 377 VDTGRTIVCTIHQPSI 392
RT++ H+ S
Sbjct: 663 --ASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA- 263
++L D++ + G + AL+G SG+GKTTLL ++AG + S G I+ G V A
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS--GHIRFHG-TDVSRLHAR 72
Query: 264 -RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEF---VNEVLETIELDGIK 319
R G+ Q +TV +++ F L + P A V ++LE ++L +
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
D P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRY---PA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 50/206 (24%)
Query: 198 GFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257
+ E++ ++L +++ L+ G AL+G SG+GK+TLL +L G +GEI + G P
Sbjct: 9 SYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG--DLKPQQGEITLDGVP- 65
Query: 258 VQETFARVSGYCEQTDIHSPQITV--EESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
VS + S I+V + +F LR
Sbjct: 66 -------VSDLEKAL---SSLISVLNQRPYLFDTTLR----------------------- 92
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ +
Sbjct: 93 -----NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143
Query: 376 VVDTGRTIVCTIHQPSIDIFEAFDEV 401
V+ +T++ H + E D++
Sbjct: 144 VLK-DKTLIWITHH--LTGIEHMDKI 166
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 36/199 (18%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L + +++ G + ++G SG+GK+TLL + + S G I I G +
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS--GTIIIDG----LKLTDD-- 67
Query: 267 GYCEQTDIHS---------------PQITVEESVIFSAWLRLAP-EINSKTKAEFVNEVL 310
+ +I+ P +TV E++ LAP ++ +KAE L
Sbjct: 68 ----KKNINELRQKVGMVFQQFNLFPHLTVLENIT------LAPIKVKGMSKAEAEERAL 117
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E +E G+ D P LS Q++R+ IA L NP ++ DEPT+ LD ++
Sbjct: 118 ELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175
Query: 371 RAVKNVVDTGRTIVCTIHQ 389
+K++ + G T+V H+
Sbjct: 176 DVMKDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-----KVQETFA 263
DV+ SLR G + + G+ GAG+T L+ L G G EG + I G P Q A
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAIRA 336
Query: 264 RVSGYCEQTDIHS--PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
++ E H P + V +++ S ++ AE + + I+ +K +
Sbjct: 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-LQIIGSAIQRLKVKTA 395
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGR 381
+P + LS +++ +A L+ NP ++ +DEPT G+D A I + + + G
Sbjct: 396 SPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 382 TIV 384
I+
Sbjct: 455 AII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 25/198 (12%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L + S+ G + A+MG +G+GK+TL V+AG +EG+I G +
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 266 S------GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEV--LETIELDG 317
+ + Q I P ++ + +LRLA NSK K + + E+ LE +E+
Sbjct: 82 AHLGIFLAF--QYPIEIPGVSNAD------FLRLA--YNSKRKFQGLPELDPLEFLEIIN 131
Query: 318 IKDSLVGIP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
K LVG+ VN G S ++KR I + + + +DE +GLD A II
Sbjct: 132 EKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA 191
Query: 371 RAVKNVVDTGRTIVCTIH 388
+ ++ + +I+ H
Sbjct: 192 EGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 39/241 (16%)
Query: 177 LTVAFQDLKYYID--TPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL 234
+T+ F ++ Y TP E + ++DV G A++G +G+GK+TL+
Sbjct: 1 MTIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLI 50
Query: 235 DVLAG--RKTTGSME-GEIKIGGYPK------VQETFARVSGYCEQTDIHSPQITVEESV 285
+ + TTG++ +I I K V++ V + E TVE +
Sbjct: 51 QNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED---TVEREI 107
Query: 286 IFSAWLRLAPE---INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA 342
IF P+ +N + + +L ++L +D + P +S Q +++ I
Sbjct: 108 IF------GPKNFKMNLDEVKNYAHRLL--MDLGFSRDVMSQSP--FQMSGGQMRKIAIV 157
Query: 343 VELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV-VDTGRTIVCTIHQPSIDIFEAFDEV 401
L NP II +DEPT GLD ++ +MR +K++ D +TI+ H + ++ DEV
Sbjct: 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEV 216
Query: 402 K 402
Sbjct: 217 I 217
|
Length = 286 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 44/190 (23%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTT----LLDVLAGRKTTGSMEGEIKIGGYP------ 256
+ +++ +LRPG L+G SG+GK+T LL ++ + GEI G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 257 --------KVQETFARVSGYCEQTDIHS---PQITVEESVIFSAWLRL-APEINSKTKAE 304
++Q F D +S P++ V + I LR+ P +++ + +
Sbjct: 355 RQLLPVRHRIQVVF---------QDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQ 403
Query: 305 FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
V V+E + LD ++ P S QR+R+ IA L+ PS+I +DEPT+ LD
Sbjct: 404 QVIAVMEEVGLD--PETRHRYPA--EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT 459
Query: 365 AAAIIMRAVK 374
A I+ +K
Sbjct: 460 VQAQILALLK 469
|
Length = 529 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 3e-07
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 13/191 (6%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYP-KVQE 260
K + L+D+ + +TAL+G SG GK+T L ++G ++I G K Q+
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73
Query: 261 TFA---RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAE-FVNEVLETIEL- 315
A V +Q ++ I E++ ++ +L I +K + E V + L+ + L
Sbjct: 74 VVALRKNVGMVFQQPNVFVKSIY--ENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLF 129
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
+ +KD L LS Q++RL IA L P ++ +DEPT+ LD ++ +I +K
Sbjct: 130 EEVKDKLK--QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE 187
Query: 376 VVDTGRTIVCT 386
+ I+ T
Sbjct: 188 LSHNLSMIMVT 198
|
Length = 246 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 3e-07
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS----MEGEIKIGGYPKVQETFAR 264
++T + G TA++G +G GK+TLL L+ T ++GE I Y + AR
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE-HIQHY--ASKEVAR 81
Query: 265 VSGYCEQTDIHSPQITVEESV---------IFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
G Q ITV+E V +F+ W K E V + ++
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRW--------RKEDEEAVTKAMQAT-- 131
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
GI + V+ LS QR+R IA+ L +I+ +DEPTT LD
Sbjct: 132 -GITH--LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 18/180 (10%)
Query: 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY-------PKVQETFARVSGYC 269
G + +MG+SG+GK+T + +L + G+I I G +++E + G
Sbjct: 19 GEIFVIMGLSGSGKSTTVRML--NRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMV 76
Query: 270 EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329
Q P +T+ ++ L PE K KA LE ++L G+++ P +
Sbjct: 77 FQQFALFPHMTILQNTSLGPELLGWPEQERKEKA------LELLKLVGLEEYEHRYP--D 128
Query: 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIH 388
LS ++R+ +A L A P I+ MDE + LD + +K + T +TIV H
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 4e-07
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 219 LTALMGVSGAGKTTLLDVL--AGRKTTG-SMEGEIKIGG-----YPKVQETFARVSGYCE 270
+T+LMG +G+GKTT L L K +G G++ +GG Y V E F R G
Sbjct: 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE-FRRRVGMLF 107
Query: 271 QTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330
Q P ++ + +L P + A+ + E D +KD L P
Sbjct: 108 QRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ--ARLTEVGLWDAVKDRLSDSP--FR 163
Query: 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
LS Q++ L +A L NP ++ +DEPT+ LD I ++++ D I+ T
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 42/206 (20%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D++ +++ T ++G+SG+GK+TL +L G S GEI + G+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFS--------- 537
Query: 266 SGYCEQTDIHS--------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG 317
+ D H+ PQ E IFS + + +K +E+ E+
Sbjct: 538 ---LKDIDRHTLRQFINYLPQ----EPYIFSGSILENLLLGAKENVS-QDEIWAACEIAE 589
Query: 318 IKDSLVGIPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
IKD + +P G TE Q++R+ +A L+ + ++ +DE T+ LD
Sbjct: 590 IKDDIENMP--LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647
Query: 367 AIIMRAVKNVVDTGRTIVCTIHQPSI 392
I+ + N+ D +TI+ H+ S+
Sbjct: 648 KKIVNNLLNLQD--KTIIFVAHRLSV 671
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 32/194 (16%)
Query: 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTT--GSMEGE------IKIGGYPKVQETFARVS 266
R G + L+G +G GK+T L +LAG+ G + + ++Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 267 GYCEQTD-IHSPQI------TVEESVIFSAWLRLAPEINSKT-KAEFVNEVLETIELDGI 318
I PQ V+ V E+ K + ++E+++ +EL +
Sbjct: 84 E--GDVKVIVKPQYVDLIPKAVKGKVG---------ELLKKKDERGKLDELVDQLELRHV 132
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
D ++ LS + +R+ IA L + F DEP++ LD + R ++ + +
Sbjct: 133 LDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187
Query: 379 TGRTIVCTIHQPSI 392
++ H ++
Sbjct: 188 DDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 22/194 (11%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY---------PK 257
L+D+T G L+G SGAGK++LL VL + S G + I G K
Sbjct: 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS--GTLNIAGNHFDFSKTPSDK 75
Query: 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA--PEINSKTKAEFVNEVLETIEL 315
R G Q P +TV++++I A R+ + + +AE ++LE + L
Sbjct: 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRVLGLSKDQALARAE---KLLERLRL 131
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
D P LS Q++R+ IA L+ P ++ DEPT LD A I+ ++
Sbjct: 132 KPYADRF---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186
Query: 376 VVDTGRTIVCTIHQ 389
+ +TG T V H+
Sbjct: 187 LAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 16/201 (7%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L +V +RP + ALMG +GAGK+TLL L G G I G + ++ +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG--IYQKDSGSILFQGKE-IDFKSSKEA 70
Query: 267 GYCEQTDIHSP-QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
+ +H + ++ SV+ + WL P TK FV++ + I D L I
Sbjct: 71 LENGISMVHQELNLVLQRSVMDNMWLGRYP-----TKGMFVDQDKMYRDTKAIFDEL-DI 124
Query: 326 -----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
V LS Q + + IA N I+ MDEPT+ L + + ++ + + G
Sbjct: 125 DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG 184
Query: 381 RTIVCTIHQPSIDIFEAFDEV 401
IV H+ +IF+ DE+
Sbjct: 185 CGIVYISHKME-EIFQLCDEI 204
|
Length = 491 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-07
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 13/175 (7%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTD 273
+ G + G +GAGKTTLL VLAG S G+I+I G + +R Y
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVES--GQIQIDGKTATRGDRSRFMAYLGHLP 91
Query: 274 IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333
++ E++ F L + + + L + L G +D+L V LS
Sbjct: 92 GLKADLSTLENLHFLCGL------HGRRAKQMPGSALAIVGLAGYEDTL-----VRQLSA 140
Query: 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
Q+KRL +A ++ + +DEP LD ++ R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 20/184 (10%)
Query: 215 RPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQT 272
RPG + ++G +G GK+T L +LAG + G E + +V + F
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPP---SWDEVIKRFRGTELQNYFK 154
Query: 273 DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG----- 327
++ ++ V ++ L P++ V E+L+ ++ G D +V G
Sbjct: 155 KLYEGELRA---VHKPQYVDLIPKVVKGK----VGELLKKVDERGKFDEVVERLGLENVL 207
Query: 328 ---VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384
V+ LS + +R+ IA L+ + + F DEP++ LD R R ++ + + G+ ++
Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI 267
Query: 385 CTIH 388
H
Sbjct: 268 VVEH 271
|
Length = 591 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-07
Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY----PKVQETF 262
L+++ ++ G + ++G SG+GK+TLL + + S G++ + G PKV E
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS--GDLIVDGLKVNDPKVDERL 74
Query: 263 ARV-SGYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKD 320
R +G Q P +T E+V+F P + +K E + E + G+ +
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMF------GPLRVRGASKEEAEKQARELLAKVGLAE 128
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
P + LS Q++R+ IA L P ++ DEPT+ LD +++ ++++ + G
Sbjct: 129 RAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 381 RTIVCTIHQ 389
T+V H+
Sbjct: 187 MTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 9e-07
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG------SMEGEIKIGGYP 256
+L D++ + PG +TAL+G +GAGK+TLL LAG T G + G++ + G P
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
|
Length = 272 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-07
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP------K 257
+L +V+ SL+ G AL+G SG GK+TL +L G ++ G + G P
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ--GNVSWRGEPLAKLNRA 82
Query: 258 VQETFARVSGYCEQTDIHS--PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
++ F R Q I + P+ TV E I LR ++ + +E+L ++L
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVRE--IIREPLRHLLSLDKAERLARASEMLRAVDL 140
Query: 316 D-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
D + D P LS Q +R+ +A L P ++ +DE + LD
Sbjct: 141 DDSVLDKR---PP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 9e-07
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY----------PKVQ-ETFARVSG 267
+TA++G SG GK+T + L +EG +K+ G P++ R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 268 YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DGIKDSLVGIP 326
Q P +++ E+V + +R++ ++ E V L+ L +KD L
Sbjct: 92 MVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLN--K 146
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 365
GLS Q++RL IA L P ++ MDEP + LD A
Sbjct: 147 SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIA 185
|
Length = 259 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 9e-07
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK 251
+E +E ++ +L D++ G + ++G SGAGK+TL+ ++ + EG I
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSIL 61
Query: 252 IGGYP----KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVN 307
I G V + ++ +Q H + TV++++ + L+ ++ E+
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQP--HLFEGTVKDNIEYGPMLKGEKNVD----VEYY- 114
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367
L + L+ K+ V LS + +R++IA L NP ++ +DEPT+ LD +
Sbjct: 115 --LSIVGLN--KEYAT--RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 368 IIMRAVKNV 376
II + +
Sbjct: 169 IIEELIVKL 177
|
Length = 241 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 50/194 (25%), Positives = 94/194 (48%), Gaps = 21/194 (10%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-------KVQ 259
L ++ + PG AL+G SG+GK+TL++++ + G+I + G+ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDG 317
A VS D+ T+ ++ + A EI A + + ++ + G
Sbjct: 406 RQVALVS-----QDVVLFNDTIANNIAYGR-TEQADRAEIERALAAAYAQDFVDKLP-LG 458
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
+ D+ +G GV LS QR+RL IA L+ + I+ +DE T+ LD + ++ A++ ++
Sbjct: 459 L-DTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM 516
Query: 378 DTGRTIVCTIHQPS 391
GRT + H+ S
Sbjct: 517 Q-GRTTLVIAHRLS 529
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 60/196 (30%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG-----YPKVQET 261
L ++ +R G + L+G +GAGK+TLL +AG GS G I+ G +
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGS--GSIQFAGQPLEAWS--AAE 66
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAW-LRLAPEINSKTKAEFVNEVLETIELDGIKD 320
AR Y Q + V F L + ++ A +NEV E + LD D
Sbjct: 67 LARHRAYLSQQQTPPFAMPV-----FQYLTLHQPDKTRTEAVASALNEVAEALGLD---D 118
Query: 321 SLVGIPGVNGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTTGLDARAAAIIMRA 372
L G VN LS E QR RL AV L NP+ ++ +DEP LD A + R
Sbjct: 119 KL-GRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRL 175
Query: 373 VKNVVDTGRTIVCTIH 388
+ + G +V + H
Sbjct: 176 LSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 47/200 (23%), Positives = 98/200 (49%), Gaps = 24/200 (12%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVL--AGRKTTGSM-------------EGEI 250
+L V+ G + +++G SG+GK+T L + + + GS+ +G++
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 251 KIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVNEV 309
K+ +++ R++ + ++ S +TV E+V+ AP ++ +K E
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENVM------EAPIQVLGLSKQEARERA 132
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
++ + GI + G V+ LS Q++R++IA L P ++ DEPT+ LD +
Sbjct: 133 VKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEV 191
Query: 370 MRAVKNVVDTGRTIVCTIHQ 389
+R ++ + + G+T+V H+
Sbjct: 192 LRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 20/186 (10%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQT 272
+RPG + G SGAGKT+LL LAG GS G I P + Q
Sbjct: 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGS--GRI---SMPADSALL-----FLPQR 464
Query: 273 DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI-PGVNGL 331
+ PQ T+ E++ + P + VL + L + + L L
Sbjct: 465 P-YLPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVL 516
Query: 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391
S +++RL A L+ P +F+DE T+ LD + + +K + T++ H+P+
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT 575
Query: 392 IDIFEA 397
+ F +
Sbjct: 576 LWNFHS 581
|
Length = 604 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 50/168 (29%), Positives = 68/168 (40%), Gaps = 44/168 (26%)
Query: 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSG--YCEQTDIHS 276
+TAL+G SG+GK+T L L M I I ARV+G DI+
Sbjct: 48 ITALIGPSGSGKSTYLRSL------NRMNDTIDI----------ARVTGQILYRGIDINR 91
Query: 277 PQITVEE---------------------SVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
+I V E ++ F+ L A + K E V L+ L
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFA--LERAGVKDKKVLDEIVETSLKQAAL 149
Query: 316 -DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
D +KD L LS Q++RL IA + P I+ MDEP + LD
Sbjct: 150 WDQVKDDLH--KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
|
Length = 267 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 1e-06
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIK 251
+ + +L+D+ ++ +TA +G SG GK+T L D++ G S EGEI
Sbjct: 90 YMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGT----SHEGEIY 145
Query: 252 IGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINS----KTKAEFVN 307
G + + + + E S+ + + P N K + V
Sbjct: 146 FLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDN--VAYGPRNNGINDRKILEKIVE 203
Query: 308 EVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+ L++ L D +KD L N LS Q++RL IA + P ++ MDEPT+ LD A
Sbjct: 204 KSLKSAALWDEVKDDL--DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT 261
Query: 367 AII 369
A I
Sbjct: 262 AKI 264
|
Length = 329 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-06
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK---TTGSMEGEIKIGGYP------ 256
+L +V + +TAL+G SG GK+T + L EG I + G
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL- 315
V E +V G Q P+ ++ ++V + LR+ E + E V E L+ L
Sbjct: 78 DVVELRKKV-GMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALW 133
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
D +KD L GLS Q++RL IA + +P +I MDEP + LD
Sbjct: 134 DEVKDKL--DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L DV+ ++ G T+++G +G+GK+T+ ++ G + GEI + F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLR 82
Query: 267 GYC-------EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
+ + + S V+ V F P V+E L+ +++
Sbjct: 83 KHIGIVFQNPDNQFVGS---IVKYDVAFGLENHAVPYDEMH---RRVSEALKQVDMLERA 136
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV-VD 378
D N LS Q++R+ IA L NPS+I +DE T+ LD A ++ V+ V +
Sbjct: 137 DY-----EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE 191
Query: 379 TGRTIVCTIHQPSIDIFEAFD 399
TI+ H D+ EA +
Sbjct: 192 HNITIISITH----DLSEAME 208
|
Length = 269 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGS--MEG-EIKIGGYPKVQET 261
L V +++ G +L+G SG GK+TLL++++G + T+G +EG +I G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
F S P +TV E+ I A R+ P+++ + V E I L G+ ++
Sbjct: 60 FQNYSLL--------PWLTVREN-IALAVDRVLPDLSKSERRAIVE---EHIALVGLTEA 107
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
PG LS ++R+ IA L P ++ +DEP LDA
Sbjct: 108 ADKRPG--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTT----LLDVLAGRKTTGSMEGEIKIGGYPKVQET 261
L+ D+ SL+ G + AL+G SG+GK+ +L +L GEI + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP--PGLTQTSGEILLDGRP-LLPL 57
Query: 262 FAR--VSGYCEQTDIHS--PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG 317
R Q + P T+ I + LR +++ + +A + E LE + L
Sbjct: 58 SIRGRHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQARALIL-EALEAVGLPD 114
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
++ L P LS +R+ IA+ L+ P + DEPTT LD A ++
Sbjct: 115 PEEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVL 165
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 21/182 (11%)
Query: 219 LTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPKVQETFARVS-GYCE 270
+TA++G SG GKTTLL D + G + G + + + P++ T R G
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVF 90
Query: 271 QTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE-TIELDGIKDSL---VGIP 326
Q P +++ ++V F P I+ ++ ++E +++ + D + + P
Sbjct: 91 QKPTPFP-MSIYDNVAF------GPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKP 143
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
G LS Q++RL IA L P +I +DEPT+ LD A I + ++ + + TIV
Sbjct: 144 GTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIV 201
Query: 387 IH 388
H
Sbjct: 202 TH 203
|
Length = 250 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Query: 219 LTALMGVSGAGKTTLL-------DVLAGRKTTGSM--EGEIKIGGYPKVQETFARVS-GY 268
+TA++G SG GK+T L D++ TTG++ +GE G + E R G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF--TDEVLLRKKIGM 124
Query: 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DGIKDSLVGIPG 327
Q P+ ++ +++ + RL + K E V + L L D + D L
Sbjct: 125 VFQKPNPFPK-SIFDNIAYGP--RLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD--KN 179
Query: 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
GLS Q++RL +A L P I+ +DEPT+ LD +A A I
Sbjct: 180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI 221
|
Length = 286 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 33/163 (20%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETF 262
R+L DV+ L+PG + L+G +GAGK+TL+ V+ G G ++ K+
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL---------- 67
Query: 263 ARVSGYCEQT---DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
R+ GY Q D P +TV + +LRL P TK E + L+ ++
Sbjct: 68 -RI-GYVPQKLYLDTTLP-LTV------NRFLRLRP----GTKKEDILPALKRVQ----A 110
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 111 GHLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPK 257
R + D++ + +TAL+G SG GK+T L D++ ++ EGEI G
Sbjct: 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS----EGEILYEGLNI 90
Query: 258 VQETFARVSGYCEQTDIHSPQITVEESVI--FSAWLRLAPEINSKTKAEFVNEVLETIEL 315
+ V+ E + +S+ + L+ A E E V E L L
Sbjct: 91 LDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAAL 150
Query: 316 -DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
D +KD L LS Q++RL IA L P+++ +DEP + LD + A I
Sbjct: 151 WDEVKDRLHS--SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI 203
|
Length = 268 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDV--LAGRKTTGSMEGEIKIGGYPKVQ 259
K ++ L +V+ + G + ++G SGAGK+TL+ L R T+GS+
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV------------- 62
Query: 260 ETFARVSGYCEQTDIHSPQITVEE---SVIFSAW-----------LRLAPEINSKTKAEF 305
V G + T + + ++T +IF + + L E+++ K E
Sbjct: 63 ----IVDGQ-DLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEI 117
Query: 306 VNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 365
+V E + L G+ D P + LS Q++R+ IA L +NP ++ DE T+ LD
Sbjct: 118 KRKVTELLALVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 366 AAIIMRAVKNVVDT-GRTIVCTIHQ 389
I+ +K + G TI+ H+
Sbjct: 176 TQSILELLKEINRRLGLTILLITHE 200
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 39/214 (18%)
Query: 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR--KTTGSMEGEIKIGGYPKVQET 261
L+ L +V+ + G A++G +G+GKTT ++ L TG++E K K ++
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFK---DEKNKKK 76
Query: 262 FARVSGYCEQTDIHSPQI---------------------------TVEESVIFSAWLRLA 294
E+ I + T+E+ +IF
Sbjct: 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIF------G 130
Query: 295 PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354
P +K E + IEL G+ +S + LS Q++R+ +A L P +
Sbjct: 131 PVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFE-LSGGQKRRVALAGILAMEPDFLVF 189
Query: 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
DEPT GLD + I+ N+ G+TI+ H
Sbjct: 190 DEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 57/217 (26%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
Query: 189 DTPLEMRERGFTEK--KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSM 246
D +E + FT K L D++ S+ G TAL+G +G+GK+T+ ++ G
Sbjct: 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN 62
Query: 247 -EGEIKIGGYPKVQETF----ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKT 301
+I + G +T +V + D TV + V F R P
Sbjct: 63 PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK 122
Query: 302 KAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361
V +VL + G+ D + P LS Q++R+ IA L P II +DE T+ L
Sbjct: 123 ---IVRDVLADV---GMLDYIDSEPA--NLSGGQKQRVAIAGILAVEPKIIILDESTSML 174
Query: 362 DARAAAIIMRAVKNV-VDTGRTIVCTIHQPSIDIFEA 397
D I++ ++ + T++ H DI EA
Sbjct: 175 DPAGKEQILKLIRKLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 221 ALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280
AL+G +G+GK+TL +L G EGEI++ G P +S +
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP--------LSSLSHSVLRQGVAMV 420
Query: 281 VEESVI----FSAWLRLAPEINSKTKAEFVNEVLETIEL--------DGIKDSLVGIPGV 328
++ V+ F A + L +I+ E V + LET++L DG+ + +G G
Sbjct: 421 QQDPVVLADTFLANVTLGRDISE----EQVWQALETVQLAELARSLPDGL-YTPLGEQG- 474
Query: 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
N LS Q++ L +A LV P I+ +DE T +D+ I +A+ V T+V H
Sbjct: 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAH 533
Query: 389 QPSIDIFEA 397
+ S I EA
Sbjct: 534 RLST-IVEA 541
|
Length = 592 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 44/196 (22%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
+ DV+ +PG A++G +GAGK+TL+++L ++ G I I G
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDG------------ 396
Query: 267 GYCEQTDIHSPQITVEE-----SVIFSAWLRLAPEIN--------SKTKAEFVN-----E 308
TDI + +T +V+F I T E +
Sbjct: 397 -----TDIRT--VTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ 449
Query: 309 VLETIE--LDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+ IE DG D++VG G LS +R+RL IA L+ +P I+ +DE T+ LD
Sbjct: 450 AHDFIERKPDGY-DTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507
Query: 367 AIIMRAVKNVVDTGRT 382
A + A+ ++ GRT
Sbjct: 508 AKVKAALDELM-KGRT 522
|
Length = 588 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 5e-06
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 25/205 (12%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY--- 255
F ++L V+ + +TA++G SG GK+T L L +E E+++ G
Sbjct: 15 FYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL---NRMNELESEVRVEGRVEF 71
Query: 256 --PKVQETFARVSGYCEQTDIHSPQ-----ITVEESVIFSAWLRLAPEINSKTKAEF--- 305
+ E ++ Q + P+ ++V ++V + + + + K E
Sbjct: 72 FNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKI-----VGWRPKLEIDDI 126
Query: 306 VNEVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
V L+ +L D IK + LS Q++RL IA L P ++ MDEP GLD
Sbjct: 127 VESALKDADLWDEIKHKIH--KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184
Query: 365 AAAIIMRAVKNV-VDTGRTIVCTIH 388
A+ + ++++ + + T+V H
Sbjct: 185 ASMKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 39/186 (20%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSM--E 247
L+++ G+ ++L +++ SLR G + G SG GK+TLL ++A T+G++ E
Sbjct: 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE 67
Query: 248 GEIKIGGYPKVQETFARVSGYCEQTDIHSPQI---TVEESVIFSAWLRLAPEINSKTKAE 304
GE I E + + YC QT P + TV +++IF +R
Sbjct: 68 GE-DISTLKP--EIYRQQVSYCAQT----PTLFGDTVYDNLIFPWQIR------------ 108
Query: 305 FVNEVLETIELDGIKDSLV--GIP------GVNGLSTEQRKRLTIAVELVANPSIIFMDE 356
+ + D L +P + LS +++R+++ L P ++ +DE
Sbjct: 109 -----NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163
Query: 357 PTTGLD 362
T+ LD
Sbjct: 164 ITSALD 169
|
Length = 225 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 6e-06
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 18/187 (9%)
Query: 217 GVLTALMGVSGAGKTTLL-------DVLAGRKTTGS--MEGEIKIGGYPKVQETFARVSG 267
+TAL+G SG GK+T L D++ G TG+ + G+ V + +V
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90
Query: 268 YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DGIKDSLVGIP 326
+Q + ++ E+VI+ LRLA + E V L+ + D +KD L
Sbjct: 91 VFQQPNPFP--FSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLH--E 144
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
LS Q++R+ IA L P +I +DEPT+ LD ++ I + + D I+ T
Sbjct: 145 SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVT 204
Query: 387 --IHQPS 391
+HQ S
Sbjct: 205 HSMHQAS 211
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 20/154 (12%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGY---- 268
+L G + AL+G +GAGK+TL+ ++AG S G ++IGG P + T A+
Sbjct: 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS--GTLEIGGNPCARLTPAKAHQLGIYL 90
Query: 269 CEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327
Q + P ++V+E+++F L + + + + + + ++LD S
Sbjct: 91 VPQEPLLFPNLSVKENILF----GLPKRQASMQKMKQLLAALGCQLDLDSSAGS------ 140
Query: 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361
L R+ + I L+ + I+ +DEPT L
Sbjct: 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 25/202 (12%)
Query: 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVL-------AGR--------KTTGSMEG 248
+L V+ G + +++G SG+GK+T L + AG + +G
Sbjct: 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78
Query: 249 EIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVN 307
++K ++Q R+ + ++ S +TV E+VI AP + +KAE +
Sbjct: 79 QLKPADKRQLQRLRTRLGMVFQHFNLWS-HMTVLENVI------EAPVHVLGVSKAEAIE 131
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367
+ + GI + P LS Q++R+ IA L P ++ DEPT+ LD
Sbjct: 132 RAEKYLAKVGIAEKADAYPAH--LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVG 189
Query: 368 IIMRAVKNVVDTGRTIVCTIHQ 389
+++ ++++ + GRT+V H+
Sbjct: 190 EVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 24/186 (12%)
Query: 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY---PKVQETFARVSGYCEQ- 271
G A++G SGAGK+T+L +L R + G I I G Q++ R G Q
Sbjct: 288 LGKTVAIVGESGAGKSTILRLLF-RFYDVNS-GSITIDGQDIRDVTQQSLRRAIGIVPQD 345
Query: 272 ------TDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
T ++ + ++ A E+ + +A +++ ++++ +G D+ VG
Sbjct: 346 TVLFNDTIAYNIKYGRPDAT--------AEEVGAAAEAAQIHDFIQSLP-EGY-DTGVGE 395
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC 385
G+ LS +++R+ IA ++ NP I+ +DE T+ LD I A++ V GRT +
Sbjct: 396 RGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLV 453
Query: 386 TIHQPS 391
H+ S
Sbjct: 454 IAHRLS 459
|
Length = 497 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 8e-06
Identities = 43/204 (21%), Positives = 83/204 (40%), Gaps = 45/204 (22%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR 264
+ DV+ ++R G + + G+ GAG+T L L G + S GEI + G
Sbjct: 273 GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS--GEILLDG---------- 320
Query: 265 VSGYCEQTDIHSPQ---------IT-------------VEESVIFSAWLRLAPE--INSK 300
+ I SP+ + + E++ ++ R + I+ +
Sbjct: 321 -----KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRR 375
Query: 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360
+ + + IK P + LS ++++ +A L +P ++ +DEPT G
Sbjct: 376 KERALAERYIRRLR---IKTPSPEQP-IGTLSGGNQQKVVLARWLATDPKVLILDEPTRG 431
Query: 361 LDARAAAIIMRAVKNVVDTGRTIV 384
+D A A I R ++ + G+ I+
Sbjct: 432 IDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 19/155 (12%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR--VSGYCE 270
++ G A++G SGAGK+TLL+++AG T S G + + G +R VS +
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPAS--GSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 271 QTDIHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETI-ELDGIKDSLVGIPG 327
+ ++ +TV +++ L L P ++N+ + + L I GI+D L +PG
Sbjct: 79 ENNLF-SHLTVAQNI----GLGLNPGLKLNAAQREK-----LHAIARQMGIEDLLARLPG 128
Query: 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
LS QR+R+ +A LV I+ +DEP + LD
Sbjct: 129 --QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 16/200 (8%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSM----EGE-IKIGG 254
+L +L +V+ ++ G AL G SGAGK+TLL L +G + EG + +
Sbjct: 19 VRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQ 78
Query: 255 YP--KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET 312
+V E + GY Q P+++ E V R P ++ +A E+L
Sbjct: 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARAR---ELLAR 135
Query: 313 IELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
+ + + L +P S +++R+ IA +A+ I+ +DEPT LDA +++
Sbjct: 136 LNIP---ERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 373 VKNVVDTGRTIVCTIHQPSI 392
+ G ++ H +
Sbjct: 192 IAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 31/170 (18%)
Query: 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGGYPKVQETFARVSGYCE 270
GS+ + ++G +G GKTT + +LAG K EG+I+I V Y
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIEL-DTV--------SYKP 67
Query: 271 QTDIHSPQITVEESVIFSAWLRLAPEINSK-TKAEFVNEVLETIELDGIKDSLVGIPGVN 329
Q + TV + L+ T F E+ + ++++ I D V
Sbjct: 68 QYIKADYEGTVRD--------LLSSITKDFYTHPYFKTEIAKPLQIEQILDREV-----P 114
Query: 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA----RAAAIIMRAVKN 375
LS + +R+ IA L + I +DEP+ LD A+ +I R +N
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 29/191 (15%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L D++ + G ++G +GAGK+TLL ++AG G++K+ G KV +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG--IYKPTSGKVKVTG--KVAPLIELGA 98
Query: 267 GYCEQTDIHSPQITVEESVIFSA-WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
G+ P++T E++ L L + E V+E++E EL D
Sbjct: 99 GF-------DPELTGRENIYLRGLILGLTRKEID----EKVDEIIEFAELGDFID----Q 143
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA----RAAAIIMRAVKNVVDTGR 381
P V S+ RL +V P I+ +DE DA + + V+ +
Sbjct: 144 P-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK----NK 198
Query: 382 TIVCTIHQPSI 392
TIV H
Sbjct: 199 TIVLVSHDLGA 209
|
Length = 249 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 26/182 (14%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY----PKVQETF 262
L +V + G L+G +G+GK+TL+ L G S G+I I G KV+ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS--GKIIIDGVDITDKKVKLSD 80
Query: 263 AR-----VSGYCEQTDIHSPQI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 314
R V Y E Q+ T+E+ + F P ++ E N V +
Sbjct: 81 IRKKVGLVFQYPEY------QLFEETIEKDIAF------GPINLGLSEEEIENRVKRAMN 128
Query: 315 LDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
+ G+ LS Q++R+ IA + P I+ +DEPT GLD + I+ +K
Sbjct: 129 IVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188
Query: 375 NV 376
+
Sbjct: 189 EL 190
|
Length = 287 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-05
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 21/194 (10%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L V ++PG + G +G+GK++L LA + +G+I I G +
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSL--SLAFFRMVDIFDGKIVIDGID--------I 85
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
S T I +++ ++FS +R + K + + E LE +L + SL G
Sbjct: 86 SKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPG- 144
Query: 326 PGVNGLSTE--------QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV 377
G++ + TE QR+ +A V SI+ MDE T +D I+ + V
Sbjct: 145 -GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF 203
Query: 378 DTGRTIVCTIHQPS 391
RT+V H+ S
Sbjct: 204 -ADRTVVTIAHRVS 216
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 188 IDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGR 240
+D +++R F K ++L ++ +TA++G SG GK+TLL D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 241 KTTGS--MEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN 298
+ G+ ++ E V RV +Q + I ++V F P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF--DNVAF------GPRML 112
Query: 299 SKTKAEFVNEVLE-----TIELDGIKDSL--VGIPGVNGLSTEQRKRLTIAVELVANPSI 351
T ++EV+E D +KD+L G+ LS Q++RL IA L P +
Sbjct: 113 GTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAIEPEV 168
Query: 352 IFMDEPTTGLD 362
I MDEP + LD
Sbjct: 169 ILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 60/216 (27%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPK 257
++L+D+ + +TA +G SG GK+T L D + K +GE+ I G
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV----KGELDIDG--- 71
Query: 258 VQETFARVSGYCEQTDIHSPQITV-----EESVIF--------SAWLRLA--PEI----- 297
D++S V + ++F S + +A P++
Sbjct: 72 --------------IDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAK 117
Query: 298 NSKTKAEFVNEVLETIEL-----DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 352
N K E V + L ++ L D +KDS LS Q++RL IA + P+++
Sbjct: 118 NKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE------LSGGQQQRLCIARAIAVKPTML 171
Query: 353 FMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
MDEP + LD A +I ++ + TI+ H
Sbjct: 172 LMDEPCSALDPVATNVIENLIQE-LKKNFTIIVVTH 206
|
Length = 251 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 336 RKRLTIAVELVANPSIIFMDEPTTGLD 362
++RL IA LV +P ++FMDEPT GLD
Sbjct: 157 QQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 39/175 (22%)
Query: 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI--GGYPKVQETFARVSGYC 269
G + G + ++G +G GKTT + +LAG IK G + +VS Y
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAG---------VIKPDEGSEEDL-----KVS-YK 406
Query: 270 EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAE-----FVNEVLETIELDGIKDSLVG 324
Q TVE+ + S ++ F E+++ + L+ + + V
Sbjct: 407 PQYISPDYDGTVEDL------------LRSAIRSAFGSSYFKTEIVKPLNLEDLLERPV- 453
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
+ LS + +R+ IA L + +DEP+ LD I+ + ++ ++
Sbjct: 454 ----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN 504
|
Length = 591 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 61/262 (23%), Positives = 110/262 (41%), Gaps = 39/262 (14%)
Query: 137 SEMRVSEDSTSGEIVKGHSRS---TPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLE 193
+ ++ D +S ++ + + P + + G+ V+ L V +Y D
Sbjct: 2 TNNEMTSDESSDGLITTTTATDTTDPSGDPAASSGETVIEARDLNV------FYGDE--- 52
Query: 194 MRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL---DVLAGRKTTGSMEGEI 250
+ L DV+ + +TA++G SG GK+T L + + +EGE+
Sbjct: 53 -----------QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL 101
Query: 251 KIGG---YPKVQETFA--RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEF 305
G Y + A R G Q P+ ++ ++V + L++ E
Sbjct: 102 TFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKIQGY--DGDIDER 156
Query: 306 VNEVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
V E L L D +KD L G++ LS Q++RL IA + +P +I MDEP + LD
Sbjct: 157 VEESLRRAALWDEVKDQL-DSSGLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPV 214
Query: 365 AAAIIMRAVKNVVDTGRTIVCT 386
A + I ++ + + ++ T
Sbjct: 215 ATSKIEDLIEELAEEYTVVIVT 236
|
Length = 285 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 39/190 (20%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L D++ S PG ++G++GAGK+TLL ++AG GE + KV
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPGIKV------- 70
Query: 266 SGYCEQTDIHSPQITVEESV------IFSAWLRLAPEINSK---TKAEF------VNEVL 310
GY Q P TV E+V I A R EI++K A+ E+
Sbjct: 71 -GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFN-EISAKFAEPDADMDALLAEQAELQ 128
Query: 311 ETIE----------LDGIKDSLVGIPG---VNGLSTEQRKRLTIAVELVANPSIIFMDEP 357
E I+ L+ D+L P V LS +R+R+ + L++ P ++ +DEP
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 358 TTGLDARAAA 367
T LDA + A
Sbjct: 189 TNHLDAESVA 198
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 27/176 (15%)
Query: 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG--------- 254
L +L + S+ G AL+G SG+GK+T+L +L + EG+I++ G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID--EGQIQVEGEQLYHMPGR 70
Query: 255 ----YPKVQETFARVS---GYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFV 306
P ++ ++ G Q+ P TV ++V AP + +AE
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVT------EAPVLVLGMARAEAE 124
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+E +++ G+ D +P LS Q++R+ IA L P ++ DE T+ LD
Sbjct: 125 KRAMELLDMVGLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 35/202 (17%)
Query: 216 PGVLTALMGVSGAGKTTLLDVLAG--RKTTGSME---GEIKIGGYPKVQETFARVSGYCE 270
PG + AL+G +GAGK+T++ VL G + GS+ E+ G QE A +
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 271 QTDIHS-----PQITVEESVIF------SAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
IH PQ+T+ E+ IF + + R I+ K +++L + L
Sbjct: 83 --IIHQELNLIPQLTIAEN-IFLGREFVNRFGR----IDWKKMYAEADKLLARLNLRFSS 135
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
D LVG LS +++ + IA L +I MDEPT L + R ++ +
Sbjct: 136 DKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ 190
Query: 380 GRTIVCTIHQPSIDIFEAFDEV 401
GR IV H+ +IFE D+V
Sbjct: 191 GRGIVYISHRLK-EIFEICDDV 211
|
Length = 501 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 29/203 (14%)
Query: 170 MVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAG 229
++ P + ++L +Y K L ++ + +TA +G SG G
Sbjct: 5 SMVATAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCG 51
Query: 230 KTTLLDVL-------AGRKTTGS--MEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280
K+TLL ++ G ++GE + + A+V G Q P ++
Sbjct: 52 KSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKV-GMVFQKPTPFP-MS 109
Query: 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRL 339
+ +++ F +RL +++ E V L L + +KD L G LS Q++RL
Sbjct: 110 IYDNIAFG--VRLFEKLSRAEMDERVEWALTKAALWNEVKDKL-HQSG-YSLSGGQQQRL 165
Query: 340 TIAVELVANPSIIFMDEPTTGLD 362
IA + P ++ +DEP + LD
Sbjct: 166 CIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 23/185 (12%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR 264
+L +V+ ++ G ++G +GAGK+TL +LA + + EG+I+I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG--------ID 71
Query: 265 VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324
+S + S I ++ +FS +R + + E + L E
Sbjct: 72 ISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSE---------- 121
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384
G LS QR+ L +A L+ P ++ +DE T +D A+I + ++ T TI+
Sbjct: 122 --GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTIL 178
Query: 385 CTIHQ 389
H+
Sbjct: 179 TIAHR 183
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY-------PKVQET 261
D + ++ G + +MG+SG+GK+T++ +L + G++ I G +++E
Sbjct: 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
+ Q+ P +TV ++ F L + KA L+ + G+++
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKA------LDALRQVGLENY 157
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
P + LS R+R+ +A L NP I+ MDE + LD
Sbjct: 158 AHSYP--DELSGGMRQRVGLARALAINPDILLMDEAFSALD 196
|
Length = 400 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-05
Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 28/184 (15%)
Query: 219 LTALMGVSGAGKTTLL-------DVLAGRKTTGSM--EGEIKIGGYPKVQETFARVSGYC 269
+TAL+G SG GK+T L D++ G K G++ EG+ + E R G
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE-LRRKIGMV 93
Query: 270 EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE-----TIELDGIKDSLVG 324
QT + +++ +++ + P+I+ + ++E++E + + +KD L
Sbjct: 94 FQTP-NPFLMSIYDNISY------GPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKL-- 144
Query: 325 IPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT 382
N LS Q++RL IA L P++I MDEPT+ LD + I + N+ ++
Sbjct: 145 --NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTI 202
Query: 383 IVCT 386
I+ T
Sbjct: 203 IIVT 206
|
Length = 254 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 30/195 (15%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L ++ ++PG + A++G SGAGKTTLL ++ G K G K + +V
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMIL---------GAQKGRGEEKYRPDSGKV 448
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFV-------NEVLETIELDGI 318
P PE T E + N +E + G+
Sbjct: 449 EVPKNTVSALIPGE-------------YEPEFGEVTILEHLRSKTGDLNAAVEILNRAGL 495
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV- 377
D+++ + LST Q++R +A L P+++ +DE LD A + R + +
Sbjct: 496 SDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555
Query: 378 DTGRTIVCTIHQPSI 392
+ G T++ H+P +
Sbjct: 556 EAGITLIVVTHRPEV 570
|
Length = 593 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 45/186 (24%), Positives = 68/186 (36%), Gaps = 62/186 (33%)
Query: 185 KYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTT 243
KY+ + + ++ ++ + V+ S++ G L+G SG GK+TL ++ G + T
Sbjct: 12 KYF-----PVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66
Query: 244 GSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA 303
GEI G I +K
Sbjct: 67 ---SGEILFEGKD----------------------------------------ITKLSKE 83
Query: 304 EFVNEVLETIELDGIKDSLVGIPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEP 357
E VLE +E VG+P LS QR+R+ IA L NP +I DEP
Sbjct: 84 ERRERVLELLEK-------VGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEP 136
Query: 358 TTGLDA 363
+ LD
Sbjct: 137 VSALDV 142
|
Length = 268 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 16/188 (8%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP----KVQET- 261
L VT +RPG + L G SGAGK+TLL ++ G + + G+I G+ K +E
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA--GKIWFSGHDITRLKNREVP 75
Query: 262 -FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
R G Q D H + ++ +V + + L I + + V ++ G+ D
Sbjct: 76 FLRRQIGMIFQ-DHH---LLMDRTVYDNVAIPLI--IAGASGDDIRRRVSAALDKVGLLD 129
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
P LS +++R+ IA +V P+++ DEPT LD + I+R + G
Sbjct: 130 KAKNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 381 RTIVCTIH 388
T++ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 29/204 (14%)
Query: 194 MRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIK 251
+ R + L DV+ + G L+G +GAGK+TLL +LAG G +
Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD----SGTVT 80
Query: 252 IGGYPKVQETFARVSGYCE-QTDIHSPQITVEESVIFSAWL--RLAPEINSKTKAEFVNE 308
+ G RVS + P++T E++ + L EI E ++E
Sbjct: 81 VRG---------RVSSLLGLGGGFN-PELTGRENIYLNGRLLGLSRKEI-----DEKIDE 125
Query: 309 VLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 368
++E EL D P V S+ + RL A+ P I+ +DE DA
Sbjct: 126 IIEFSELGDFIDL----P-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEK 180
Query: 369 IMRAVKNVVDTGRTIVCTIHQPSI 392
R ++ ++ G+T++ H PS
Sbjct: 181 CQRRLRELLKQGKTVILVSHDPSS 204
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 29/249 (11%)
Query: 141 VSEDSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFT 200
+ E+ T E+V KE V EP+ K YI +RG
Sbjct: 247 IKEEGTPDEVVAVFMEGVSEVEKE----CEVEVGEPIIKVRNVSKRYISV-----DRGV- 296
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY----- 255
++ + +V+ ++ G + ++G SGAGKTTL ++AG S E +++G
Sbjct: 297 ---VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT 353
Query: 256 ---PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET 312
P + R G Q P TV +++ + L L E+ ++ KA L+
Sbjct: 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL-ARMKAVI---TLKM 409
Query: 313 IELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
+ D K + + LS +R R+ +A L+ P I+ +DEPT +D I
Sbjct: 410 VGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVD 465
Query: 373 VKNVVDTGR 381
V + + R
Sbjct: 466 VTHSILKAR 474
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 26/186 (13%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA---GRKTTGSMEGEIKIGGYPKVQET 261
L V+ + +TAL+G SG GK+T L L R ++G +++ G Q+
Sbjct: 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118
Query: 262 FARVS-----GYCEQTDIHSPQITVEESVIFSA----------WLRLAPEINSKTKAEFV 306
V G Q+ P+ ++ E++ + RL + + E V
Sbjct: 119 VNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELV 177
Query: 307 NEVLETIEL-DGIKDSLVGIPGVN--GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
L L D + D L N GLS Q++RL IA L +P +I MDEP + LD
Sbjct: 178 ERSLRQAALWDEVNDRL----DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 364 RAAAII 369
A + I
Sbjct: 234 IATSKI 239
|
Length = 305 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYPK 257
+ + L +V+ + G A++G +G+GK+T+ +L G K GEIKI G
Sbjct: 17 YPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITI 73
Query: 258 VQETFARVS---GYCEQT-DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 313
+E + G Q D TVE+ + F + P K + + + +
Sbjct: 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV--- 130
Query: 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
G++D L P LS Q++R+ IA L NP II DE T+ LD + I + +
Sbjct: 131 ---GMEDYLDKEP--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
Query: 374 KNVVDTG-RTIVCTIH 388
++ T +T++ H
Sbjct: 186 VDLRKTRKKTLISITH 201
|
Length = 271 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 45/182 (24%)
Query: 212 GSLRPG-VLTALMGVSGAGKTTLLDVLAGR--KTTGSMEGEIKIGGYPKVQETFARVSGY 268
G + G V+ + G +G GKTT +LAG G ++ E+KI
Sbjct: 360 GEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS--------------- 403
Query: 269 CEQTDIHSPQ-ITVEESVIFSAWLRLAPEINSKTKAEFVN-EVLETIELDGIKDSLVGIP 326
+ PQ I + LR I + + E+++ ++L+ + D V
Sbjct: 404 ------YKPQYIKPDYDGTVEDLLR---SITDDLGSSYYKSEIIKPLQLERLLDKNV--- 451
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA----RAAAIIMRAVKN------V 376
LS + +R+ IA L + + +DEP+ LD A I R + V
Sbjct: 452 --KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALV 509
Query: 377 VD 378
VD
Sbjct: 510 VD 511
|
Length = 590 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 23/150 (15%)
Query: 220 TALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG---YPKVQETF----ARVSGYCEQT 272
TA+ G SGAGKT+L++ ++G T +G I + G + + R GY Q
Sbjct: 27 TAIFGRSGAGKTSLINAISG--LTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84
Query: 273 DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332
P V + LR + A+F V L GI+ L PG LS
Sbjct: 85 ARLFPHYKVRGN------LRYG--MAKSMVAQFDKIV----ALLGIEPLLDRYPG--SLS 130
Query: 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+++R+ I L+ P ++ MDEP LD
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSG------ 267
+RPG + A+MG +G+GK+TL LAGR+ G ++ G ++ + +G
Sbjct: 24 VRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMA 83
Query: 268 --YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
Y + S Q ++ ++ R ++ + +F + + E I L + + L+
Sbjct: 84 FQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLD---RFDFQDLMEEKIALLKMPEDLL-T 139
Query: 326 PGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384
VN G S ++KR I V P + +DE +GLD A I+ V ++ D R+ +
Sbjct: 140 RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFI 199
Query: 385 CTIHQPSI 392
H I
Sbjct: 200 IVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG--YPKVQETFAR 264
++DV+ + G A++G +GAGKTTL+++L ++ G+I I G V R
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVTRESLR 408
Query: 265 VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324
S D ++ E++ E+ KA ++ + +G D+LVG
Sbjct: 409 KSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILK-RSNGY-DTLVG 466
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGR 381
G N LS +R+RL IA ++ N I+ +DE T+ LD A VKN +D R
Sbjct: 467 ERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAIDALR 518
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 23/201 (11%)
Query: 185 KYYIDTP---LEMRERGFT--EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239
K I+ +E R FT K++ L ++ + G AL+G SG+GK+T+ ++L
Sbjct: 332 KRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT- 390
Query: 240 RKTTGSMEGEIKIGGY-------PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292
+ EGEI + G+ ++ A VS ++H T+ ++ ++ +
Sbjct: 391 -RFYDIDEGEILLDGHDLRDYTLASLRNQVALVS-----QNVHLFNDTIANNIAYARTEQ 444
Query: 293 LAPE-INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSI 351
+ E I + + + + ++ +G+ D+++G GV LS QR+R+ IA L+ + I
Sbjct: 445 YSREQIEEAARMAYAMDFINKMD-NGL-DTVIGENGVL-LSGGQRQRIAIARALLRDSPI 501
Query: 352 IFMDEPTTGLDARAAAIIMRA 372
+ +DE T+ LD + I A
Sbjct: 502 LILDEATSALDTESERAIQAA 522
|
Length = 582 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 13 VAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEF 64
VAA+ A +F L L F GF I +P +P W W +WI PV + GL ++++
Sbjct: 1357 VAAIFAAAFYGLFNL-FSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQY 1407
|
Length = 1470 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSG-- 267
V+ +LR G A++G +G+GK+TL +LAG S GEI I +P ++ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS--GEILINDHPLHFGDYSFRSKRI 89
Query: 268 ---YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324
+ + +P++ + I LRL ++ + + + ++ ET+ + G+
Sbjct: 90 RMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRK---QIFETLRMVGLLPDHAN 144
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363
+ L+ Q++R+ +A L+ P II DE LD
Sbjct: 145 Y-YPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 6e-05
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 29/215 (13%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258
+TE +L D++ S+ G L+G +G+GK+TLL L +T EGEI+I G
Sbjct: 1227 YTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST---EGEIQIDGVSWN 1283
Query: 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318
T QT + + ++ IFS R + + E + +V E + G+
Sbjct: 1284 SVTL--------QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEV---GL 1332
Query: 319 KDSLVGIPG------VNG---LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
K + P V+G LS ++ + +A +++ I+ +DEP+ LD II
Sbjct: 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392
Query: 370 MRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404
+ +K I+ H+ EA E +QF
Sbjct: 1393 RKTLKQSFSNCTVILSE-HR-----VEALLECQQF 1421
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 37/194 (19%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
LL DV+ S+ G LT ++G +G+GK+TLL L + EI G RV
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS-------QFEISEG----------RV 717
Query: 266 SGYCEQTDIHSPQ------ITVEESVIF---SAWLRLAPEIN-SKTKAEFVNEVLETIEL 315
+ E++ + PQ TV +++F RLA + S+ +A+ +L
Sbjct: 718 --WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLA-------QL 768
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
G ++ +G GVN LS Q+ R+++A + AN + +D+P + LDA ++
Sbjct: 769 GGGLETEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827
Query: 376 VVDTGRTIVCTIHQ 389
G+T V HQ
Sbjct: 828 GALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 44/202 (21%), Positives = 84/202 (41%), Gaps = 21/202 (10%)
Query: 197 RGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG-- 254
R T + + + D++ S+ G + G+ G+G+T L++ L G GEI++ G
Sbjct: 269 RNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKD 326
Query: 255 ------YPKVQETFA------RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTK 302
V++ A R +G+ I + + + S+ + + +
Sbjct: 327 ISPRSPLDAVKKGMAYITESRRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDE 385
Query: 303 AEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
EL +K V + LS ++++ I+ L P +I DEPT G+D
Sbjct: 386 QRTAEN---QRELLALKCHSVN-QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGID 441
Query: 363 ARAAAIIMRAVKNVVDTGRTIV 384
A A I + ++ + D G+ I+
Sbjct: 442 VGAKAEIYKVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 25/175 (14%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-- 256
F + + + ++ +LR G A++G +G+GK+TL +LAG GE+ I +P
Sbjct: 21 FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTSGELLIDDHPLH 78
Query: 257 ---------KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVN 307
+++ F S T ++ Q S I LRL ++ + + + +
Sbjct: 79 FGDYSYRSQRIRMIFQDPS-----TSLNPRQ---RISQILDFPLRLNTDLEPEQREKQII 130
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
E L + L + D P + L+ Q++RL +A L+ P +I DE LD
Sbjct: 131 ETLRQVGL--LPDHASYYP--HMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 9e-05
Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 21/197 (10%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV----QET 261
+L D+T + + +MG SG+GK+TLL VL + + +IK+ G KV ++
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL--NRLIEIYDSKIKVDG--KVLYFGKDI 80
Query: 262 FA-------RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 314
F + G Q P +++ +++ + L+ + + V E L +
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVG 138
Query: 315 L-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
L + D L P + LS Q++RLTIA L P ++ MDEPT+ +D + I + +
Sbjct: 139 LWKEVYDRL-NSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 374 KNVVDTGRTIVCTIHQP 390
+ + IV H P
Sbjct: 197 TELKNE-IAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 43/222 (19%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-- 256
+TE +L +++ S+ PG L+G +G+GK+TLL T EG+I+I G
Sbjct: 12 YTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT---EGDIQIDGVSWN 68
Query: 257 -----KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE 311
K ++ F + PQ + IFS R + K E E+ +
Sbjct: 69 SVPLQKWRKAFGVI-----------PQ----KVFIFSGTFRKNLDPYGKWSDE---EIWK 110
Query: 312 TIELDGIKDSLVGIPG------VNG---LSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
E G+K + PG V+G LS ++ + +A +++ I+ +DEP+ LD
Sbjct: 111 VAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170
Query: 363 ARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404
+I + +K I+ H+ EA E ++F
Sbjct: 171 PITYQVIRKTLKQAFADCTVILSE-HR-----IEAMLECQRF 206
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 14/191 (7%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE 260
E + L V+ S+ G +++G +G+GK+T ++ G EG++KI G E
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDG--LFEEFEGKVKIDGELLTAE 74
Query: 261 TF----ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 316
++ + D TVE+ V F E + E + V E +
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM------ENQGIPREEMIKRVDEALLAV 128
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
+ D P LS Q++R+ +A + P II +DE T+ LD IMR + +
Sbjct: 129 NMLDFKTREPA--RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186
Query: 377 VDTGRTIVCTI 387
+ + V +I
Sbjct: 187 KEKYQLTVLSI 197
|
Length = 277 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 26/159 (16%)
Query: 219 LTALMGVSGAGKTT-------LLDVLAGRKTTGSM---EGEIKIGGYPKVQETFARVSGY 268
+TA++G SG GK+T +++++ KTTG + + I Y V+E V G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS-VEELRTNV-GM 109
Query: 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET-----IELDGIKDSLV 323
Q P+ ++ ++V + P+I+ + ++E++E D +KD L
Sbjct: 110 VFQKPNPFPK-SIYDNVTY------GPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLH 162
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
GLS Q++RL IA L P +I MDEPT+ LD
Sbjct: 163 --DNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 48/188 (25%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIK-IGGYPKVQ 259
K++ L++V+ + G + L+G +GAGKTTLL L G R T+G + + K I + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319
V+ E + S ++TVEE++ + A + + ++V E+ + I+
Sbjct: 77 IMREAVAIVPEGRRVFS-RMTVEENLAMGGF--FAERDQFQERIKWVYELFPRLHERRIQ 133
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
+ +S +++ L I L++ P ++ +DEP+ GL A II++ + + ++
Sbjct: 134 RA-------GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIEQ 182
Query: 380 GRTIVCTI 387
R TI
Sbjct: 183 LREQGMTI 190
|
Length = 237 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 20/189 (10%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA---RV 265
DV+ +R G + + GV+G G++ L++ ++G + S G I + G + R
Sbjct: 276 DVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS--GRILLNGKDVLGRLSPRERRR 333
Query: 266 SGY-CEQTDIH----SPQITVEESVIFSAWLRLAPE-----INSKTKAEFVNEVLETIEL 315
G D H +++ E+++ P ++ + +F E++E E
Sbjct: 334 LGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDKKPFSRGGFLDRRAIRKFARELIE--EF 390
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
D ++ P LS +++L +A EL P ++ +PT GLD A I +
Sbjct: 391 D-VRAPSPDAP-ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE 448
Query: 376 VVDTGRTIV 384
+ D G+ ++
Sbjct: 449 LRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 30/186 (16%)
Query: 219 LTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPKVQ----------ET 261
+TAL+G SG GK+T L D+ G EGEI + +P E
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNH----YEGEIIL--HPDNVNILSPEVDPIEV 97
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DGIKD 320
R+S ++ + I E+V + LR+ E V L L D +KD
Sbjct: 98 RMRISMVFQKPNPFPKSIF--ENVAYG--LRIRGVKRRSILEERVENALRNAALWDEVKD 153
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
L G N LS Q++RL IA L +P I+ DEPT+ LD A A I + ++ +
Sbjct: 154 RL-GDLAFN-LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKV 211
Query: 381 RTIVCT 386
++ T
Sbjct: 212 TILIVT 217
|
Length = 265 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 49/178 (27%)
Query: 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS 276
VL + GVSG+GK+TL+ G+ ++ + F+R
Sbjct: 21 NVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLP---KFSR------------ 59
Query: 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336
+IF L+ ++ L + L ++ LS +
Sbjct: 60 ------NKLIFIDQLQFLIDVG-----------LGYLTLGQK---------LSTLSGGEL 93
Query: 337 KRLTIAVELVANP--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392
+R+ +A EL + P ++ +DEP+TGL + ++ +K ++D G T++ H +
Sbjct: 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 296 EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355
++ K ++E +E+ L D+ VG P LS Q++R+ IA L+ P I+ +D
Sbjct: 1327 DVKRACKFAAIDEFIES--LPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLD 1383
Query: 356 EPTTGLDARAAAIIMRAVKNVVDTG-RTIVCTIHQ 389
E T+ LD+ + +I + + ++ D +TI+ H+
Sbjct: 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGS--MEGEIKIGGYPK-------VQETF 262
+R + +L+G +GAGKTT+ + L G + T G+ + G+ I G P V TF
Sbjct: 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQ-HIEGLPGHQIARMGVVRTF 86
Query: 263 ARVSGYCEQTDIHS---PQITVEESVIFSAWLRLAPEINSKTKA-EFVNEVLETIELDGI 318
V + E T I + Q ++ +FS L+ ++++A + LE + L
Sbjct: 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH 146
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+ G L+ Q++RL IA +V P I+ +DEP GL+
Sbjct: 147 ANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 60/208 (28%), Positives = 86/208 (41%), Gaps = 50/208 (24%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK---TTGSMEGEIKIGGYPKVQETFA 263
L +V+ + +TAL+G SG GK+T + L +EG++ I
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI----------- 76
Query: 264 RVSGYCEQTDIHSPQITVEE-----SVIF--------SAWLRLA--PEINSKTKAEF--- 305
E DI+ P + V E ++F S + +A P I+ K +
Sbjct: 77 ------EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV 130
Query: 306 VNEVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD-- 362
V L + L D D L P ++ LS Q++RL IA L P II DEPT+ LD
Sbjct: 131 VENALRSAALWDETSDRLKS-PALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPI 188
Query: 363 --ARAAAIIMRAVKNVVDTGRTIVCTIH 388
AR +IM K+ TIV H
Sbjct: 189 STARIEDLIMNLKKDY-----TIVIVTH 211
|
Length = 258 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390
LS +++RL A L+ P +F+DE T+ LD + + + +K + G T++ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRP 148
Query: 391 SIDIF 395
S+ F
Sbjct: 149 SLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L+ ++ + P ++G +GAGK+++L+ L + +G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGL--- 1305
Query: 266 SGYCEQTDIHSPQITVEES-VIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DGIKDSLV 323
TD+ + +S V+FS +R + S+ + E LE + D I +
Sbjct: 1306 ------TDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 324 GI-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
G+ G S QR+ L++A L+ I+ +DE T +D R ++I R ++
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 53/176 (30%)
Query: 205 RLLY-DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA 263
+LL D++ L PG + ++G +GAGK+TL ++ G++ S G IKIG K+
Sbjct: 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS--GTIKIGETVKL----- 387
Query: 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
Y +Q+ L P +KT E ++ L+ I+L +
Sbjct: 388 ---AYVDQSRDA-----------------LDP---NKTVWEEISGGLDIIQLGKRE---- 420
Query: 324 GIPG-----------------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+P V LS +R R+ +A L + +++ +DEPT LD
Sbjct: 421 -VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
++LVG + LS Q++R++IA ++ NP I+ +DE T+ LD ++ ++ + + N+
Sbjct: 570 ETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625
|
Length = 1466 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 23/166 (13%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA----- 263
+ + + G + LMG+SG+GK+TLL + G +K G +
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGD--GSVDVANCDAAT 99
Query: 264 -------RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 316
RVS +Q + P TVEE+V F ++ P+ + + + E LE + L
Sbjct: 100 LRRLRTHRVSMVFQQFAL-LPWRTVEENVAFGLEMQGMPKAERRKRVD---EQLELVGLA 155
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
D G LS ++R+ +A I+ MDEP + LD
Sbjct: 156 QWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 41/223 (18%)
Query: 171 VLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGK 230
VL E L +AF E+ + +++ SL+ G A++G SG+GK
Sbjct: 12 VLAVENLNIAFMQ------------EQQKIAA----VRNLSFSLQRGETLAIVGESGSGK 55
Query: 231 TT-------LLDVLAGRKTTGSM------EGEIKIGGYPKVQETFARVSG------YCEQ 271
+ LL+ G M I++ Q V G + E
Sbjct: 56 SVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQ--MRHVRGADMAMIFQEP 113
Query: 272 TDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331
+P TV E + S +RL + + +L+ + + + L P + L
Sbjct: 114 MTSLNPVFTVGEQIAES--IRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP--HQL 169
Query: 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
S R+R+ IA+ L P+++ DEPTT LD A I++ +K
Sbjct: 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIK 212
|
Length = 623 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L +++ L G L A+ G +G+GK++LL ++ G EG+IK G R+
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS--EGKIKHSG---------RI 489
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
S + QT P T+++++IF L+ + T ++ E I L KD V
Sbjct: 490 S-FSPQTSWIMPG-TIKDNIIFG----LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLG 543
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
G LS QR R+++A + + + +D P T LD
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 1 MFRFVASVFQTVVA----AMTAGSFAILL---VLLFGGFVISKPSMPVWLKWGFWISPVT 53
F + +++ Q V++ A A A LL L F G + MP + + + SP T
Sbjct: 1226 FFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285
Query: 54 Y 54
Y
Sbjct: 1286 Y 1286
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 21/179 (11%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYPKVQETFARVSG 267
+++ +R G + L GV GAG+T L + L G R G G I + G +E A +
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNG----KEINALSTA 333
Query: 268 YC-EQTDIHSPQITVEESVIFSAWLRL--------APEINSKTKAEFVNEVLETIELD-G 317
+ ++ P+ + A L K E N VLE
Sbjct: 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE--NAVLERYRRALN 391
Query: 318 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
IK + LS ++++ IA L A+P ++ +DEPT G+D A I + ++++
Sbjct: 392 IKFNHAEQA-ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
|
Length = 510 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 9e-04
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240
DV+ L PG + ++G SG+GKTTLL+ L+ R
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55
|
Length = 258 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 30/167 (17%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L D+ + G L A++G +G GKT+L+ +M GE+ + + +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLIS---------AMLGEL-----SHAETSSVVIR 678
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL---- 322
G + + PQ+ S IF+A +R S ++E ++ L D L
Sbjct: 679 G----SVAYVPQV----SWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRD 730
Query: 323 ---VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+G GVN +S Q++R+++A + +N I D+P + LDA A
Sbjct: 731 LTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776
|
Length = 1495 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.001
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392
L + + S++ +DEP GL + ++ +K + + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L +T S+ G L A++G G GK++LL L +EG + + G V+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEGHVHMKG---------SVA 702
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
+Q I + ++ E+++F L +A + LE L + +G
Sbjct: 703 YVPQQAWIQND--SLRENILFGKALN-EKYYQQVLEACALLPDLEI--LPSGDRTEIGEK 757
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373
GVN LS Q++R+++A + +N I D+P + +DA I V
Sbjct: 758 GVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 31/193 (16%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
+L + ++ G ++G +GAGK++L L + S EGEI I G A++
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSL--TLGLFRINESAEGEIIIDGL-----NIAKI 1353
Query: 266 SGYCEQTDIHSPQITV--EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
+ D+ +IT+ ++ V+FS LR+ + S+ E EV +EL +K +
Sbjct: 1354 GLH----DLRF-KITIIPQDPVLFSGSLRMNLDPFSQYSDE---EVWWALELAHLKTFVS 1405
Query: 324 GIP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
+P G LS QR+ + +A L+ I+ +DE T +D +I ++
Sbjct: 1406 ALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR 1465
Query: 375 NVVDTGRTIVCTI 387
+ CT+
Sbjct: 1466 TQFED-----CTV 1473
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 60/177 (33%)
Query: 217 GVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYC 269
G +TAL+G SG GK+T+L D++ G S++G + G
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEG----CSLKGRVLFDG--------------- 79
Query: 270 EQTDIHSPQI---------------------TVEESVIFSAWLRLAPEINSKT--KAEFV 306
TD++ P++ ++ E++ F A IN T E V
Sbjct: 80 --TDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGA------RINGYTGDMDELV 131
Query: 307 NEVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
L + D KD L LS Q++RL IA + P +I MDEP + LD
Sbjct: 132 ERSLRKAAVWDECKDKLN--ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 49/196 (25%), Positives = 73/196 (37%), Gaps = 50/196 (25%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKT----TLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR 264
++ + G AL+G SG+GK+ ++L +L G I G E
Sbjct: 28 GISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDG-----EDLLA 81
Query: 265 VSGYCEQT-------DIH----------SPQITVEESVIFSAWLRLAPEINSKTKAEFVN 307
S E+ I +P T+ + + LRL ++
Sbjct: 82 AS---ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV--LRLHRGLSRAAARARAL 136
Query: 308 EVLETIELDGIKDSLVGIPGVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTT 359
E+LE LVGIP LS QR+R+ IA+ L P ++ DEPTT
Sbjct: 137 ELLE----------LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTT 186
Query: 360 GLDARAAAIIMRAVKN 375
LD A I+ +K
Sbjct: 187 ALDVTVQAQILDLLKE 202
|
Length = 534 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 30/158 (18%)
Query: 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIH 275
G L A++G +G GKT+L+ + G S + + I G T A V
Sbjct: 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRS-DASVVIRG------TVAYV---------- 684
Query: 276 SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL-------VGIPGV 328
PQ+ S IF+A +R S E ++ L D L +G GV
Sbjct: 685 -PQV----SWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGV 739
Query: 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
N +S Q++R+++A + +N + D+P + LDA
Sbjct: 740 N-ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVG 776
|
Length = 1622 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.002
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 219 LTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPKVQETFARVS-GYCE 270
LTAL+G SG GK+T L D + K TG ++ E + K+ R G
Sbjct: 32 LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVF 91
Query: 271 QTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DGIKDSLVGIPGVN 329
Q P +V ++V + L++A + + + V E L+ + KD+L
Sbjct: 92 QQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKETKDNLD--RNAQ 146
Query: 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
S Q++R+ IA L P ++ +DEPT+ LD +++ I
Sbjct: 147 AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI 186
|
Length = 251 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.002
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARV 265
LL D++ ++ PG L+G +GAGK+TLL ++AG EG + G K+ F ++
Sbjct: 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWGSTVKIG-YFEQL 71
Query: 266 SG 267
SG
Sbjct: 72 SG 73
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.003
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 11/185 (5%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGS-MEGEIKIGGYPKVQETFA 263
L ++ ++ G ++G +G+GK+TL L G R G + I G + K+Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
V + + TVEE + F P I + + V+ L I L+ +
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR---VDRALAEIGLEKYRHR-- 132
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTI 383
LS Q + + +A L P + DE T+ LD + ++ +K + + G+TI
Sbjct: 133 ---SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTI 189
Query: 384 VCTIH 388
V H
Sbjct: 190 VYITH 194
|
Length = 274 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 40/191 (20%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKT----TLLDVL-AGRKTTGSMEGEIKIGGYPKVQE 260
L++ V+ +L+ G + AL+G SG+GK+ L +L AG + T G + + G P
Sbjct: 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA---GRVLLDGKPVAP- 73
Query: 261 TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
+ G T + +P+ SA+ L T E +
Sbjct: 74 --CALRGRKIATIMQNPR---------SAFNPL------HTMHTHARETCLALGKPADDA 116
Query: 321 SLVGIPGVNGLSTEQR--------------KRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+L GL R +R+ IA+ L+ I DEPTT LD A
Sbjct: 117 TLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176
Query: 367 AIIMRAVKNVV 377
A I+ ++++V
Sbjct: 177 ARILDLLESIV 187
|
Length = 254 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.003
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 20/167 (11%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPKVQ 259
L DV + + A +G SG GK+TLL D++ G K G + + ++
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 260 ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA--EFVNEVLETIEL- 315
R G Q P+ ++ E++ F AP N E V + L +
Sbjct: 96 SVKLRRQVGMVFQRPNPFPK-SIYENIAF------APRANGYKGNLDELVEDSLRRAAIW 148
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+ +KD L LS Q++RL IA + P ++ MDEP + LD
Sbjct: 149 EEVKDKLK--EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
|
Length = 274 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 46/192 (23%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKV---------QETF 262
+ G +T ++G +G GKTT + +L+G G E E + +V Q F
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEE---PSWDEVLKRFRGTELQNYF 152
Query: 263 ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
++ E +H PQ V+ L P++ V E+L+ ++ G D +
Sbjct: 153 KKLYNG-EIKVVHKPQY-VD----------LIPKVFKGK----VRELLKKVDERGKLDEV 196
Query: 323 VGIPG--------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR----AAAIIM 370
V G ++ LS + +R+ IA L+ + F DEPT+ LD R A +I
Sbjct: 197 VERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIR 256
Query: 371 RAVKN----VVD 378
+ VV+
Sbjct: 257 ELAEGKYVLVVE 268
|
Length = 590 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 37.4 bits (86), Expect = 0.004
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTTGLDARAAA 367
E I + + L+ I G S RL +A+ L P ++ +DE T+ LDA A
Sbjct: 38 GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA 97
Query: 368 IIMRAVKNVVD------TGRTIVCTIHQPSI 392
+++ + + T++ T +
Sbjct: 98 LLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 330 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC 385
LS +++ +A+ L + + +DE GLD R + A+ + G ++
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 386 TIHQPSIDIFEAFDEVKQF 404
H P ++ E D++
Sbjct: 137 ITHLP--ELAELADKLIHI 153
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 34/162 (20%)
Query: 219 LTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGY----PKVQ--ETFARV 265
+TA +G SG GK+T+L D++ G + +EG++ G P V E R+
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFR----VEGKVTFHGKNLYAPDVDPVEVRRRI 93
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN--SKTKAEFVNEVLETIEL-DGIKDSL 322
G Q P+ ++ +++ + IN E V L L D +KD L
Sbjct: 94 -GMVFQKPNPFPK-SIYDNIAY------GARINGYKGDMDELVERSLRQAALWDEVKDKL 145
Query: 323 VGIPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTTGLD 362
+GLS Q++RL IA + P +I MDEP + LD
Sbjct: 146 ----KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 51/164 (31%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGE------IKIGGYPKVQETFARVSG 267
L PG L+G +GAGK+TL+ +LAG + GE IK+G + + Q F R
Sbjct: 335 LVPGSRIGLLGRNGAGKSTLIKLLAG--ELAPVSGEIGLAKGIKLGYFAQHQLEFLR--- 389
Query: 268 YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327
+ES + RLAP + LE ++D L G G
Sbjct: 390 -------------ADESPL-QHLARLAP------------QELE----QKLRDYLGGF-G 418
Query: 328 VNG---------LSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
G S ++ RL +A+ + P+++ +DEPT LD
Sbjct: 419 FQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 404 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.98 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.98 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.96 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.95 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.94 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.94 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.93 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.91 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.91 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.91 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.89 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.89 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.88 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.88 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.87 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.85 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.84 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.84 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.84 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.83 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.83 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.83 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.83 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.82 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.81 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.8 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.78 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.75 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.74 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.73 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.73 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.72 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.7 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.7 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.67 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.66 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.65 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.64 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.57 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.57 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.56 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.56 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.53 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.53 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.52 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.49 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.46 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.44 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.43 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.36 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.32 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.32 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.31 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.28 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.28 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.27 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.27 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.25 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.24 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.24 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.23 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.19 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.16 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.15 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.15 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.14 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.06 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.06 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.06 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.05 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.02 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.02 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.99 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.98 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.95 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.94 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.91 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.9 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.89 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.88 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.87 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.87 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.8 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.78 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.73 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.68 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.63 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.62 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.61 | |
| PF08370 | 65 | PDR_assoc: Plant PDR ABC transporter associated; I | 98.6 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.58 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.51 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.5 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.5 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.47 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.47 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.45 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.35 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.34 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.32 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 98.32 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.29 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.27 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.22 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.22 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.21 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.2 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.17 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.17 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.16 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.13 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.12 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.1 | |
| PF06422 | 103 | PDR_CDR: CDR ABC transporter; InterPro: IPR010929 | 98.09 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.07 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.07 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.05 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.03 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.01 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.0 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-87 Score=725.36 Aligned_cols=394 Identities=51% Similarity=0.856 Sum_probs=342.3
Q ss_pred CceeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCCccccC--CC---
Q 015591 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPRWQKML--PT--- 75 (404)
Q Consensus 1 ~fr~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~~~~~~--~~--- 75 (404)
+||++|++||++..|+++|++.++++.+|+||+||.++||+||||++||||++|||||+|+|||++++|+|.. |+
T Consensus 588 lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n 667 (1391)
T KOG0065|consen 588 LFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDN 667 (1391)
T ss_pred HHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccc
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999972 11
Q ss_pred -----------CcchhhhhhhccCcc-----cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhhh
Q 015591 76 -----------NTTIGQEILESRGLN-----FDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMISLEKFSEM 139 (404)
Q Consensus 76 -----------~~~~G~~~l~~~~~~-----~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (404)
+.++|.+|++.++|. |.+.|+|+++|++++|.++|.++..++++++++....+.....++..+.
T Consensus 668 ~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~ 747 (1391)
T KOG0065|consen 668 ISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEK 747 (1391)
T ss_pred cccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhh
Confidence 356899999998877 8899999999999999999999999999999987777666555544332
Q ss_pred cccC-CCCCccccccCCCCCCCCccccccCCcccCCCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCc
Q 015591 140 RVSE-DSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGV 218 (404)
Q Consensus 140 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 218 (404)
.... ........... +.....+..+..+.++..++++||.+.++.+.+++.. .+++++|+||++.++||.
T Consensus 748 ~~~~~~~~~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~q---G~~~qLL~~V~G~~kPG~ 818 (1391)
T KOG0065|consen 748 KKVKSAGSSSEIEKLD------DSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQ---GGTRQLLNNVSGAFKPGV 818 (1391)
T ss_pred hcchhccccccccccc------cccccccccccCCCccccccccceEEEEeCCcccccc---ccceEhhhcCceEecCCc
Confidence 1111 00000000000 0000012344455666677777777776665554332 367889999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN 298 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~ 298 (404)
++||||+||||||||||+||||.+.|.++|+|+++|.|.+.+.++|.+|||+|+|.|.+.+||||.|.|+|.+|++.+++
T Consensus 819 LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~ 898 (1391)
T KOG0065|consen 819 LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVS 898 (1391)
T ss_pred eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCC
Confidence 99999999999999999999999999999999999999887899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 015591 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTTGLDARAAAIIMRAVKNVV 377 (404)
Q Consensus 299 ~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p-~iLlLDEPtsgLD~~~~~~i~~~l~~l~ 377 (404)
.+++.++++++++.++|++++|.+||.|| .+||.+|||||+||++|++|| .||+|||||||||++++..|++.+++++
T Consensus 899 ~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla 977 (1391)
T KOG0065|consen 899 DEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA 977 (1391)
T ss_pred HHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 899999999999999999999 7899999999999999999999999999
Q ss_pred hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 378 DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 378 ~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.|+||+||+||||.+||+.||++|++
T Consensus 978 ~tGqtIlCTIHQPS~~ife~FD~LLLL 1004 (1391)
T KOG0065|consen 978 DTGQTILCTIHQPSIDIFEAFDELLLL 1004 (1391)
T ss_pred hcCCeEEEEecCCcHHHHHHHhHHHHH
Confidence 999999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=655.66 Aligned_cols=404 Identities=58% Similarity=0.984 Sum_probs=330.1
Q ss_pred CceeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCCccccC-CC-Ccc
Q 015591 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPRWQKML-PT-NTT 78 (404)
Q Consensus 1 ~fr~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~~~~~~-~~-~~~ 78 (404)
+||++++++|++..|+.+++++++++++|+||+||+++||+||+|++||||++|||+|+++|||.+..|.+.. .+ ..+
T Consensus 666 l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~ 745 (1470)
T PLN03140 666 IFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTR 745 (1470)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999886432 22 467
Q ss_pred hhhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhhhhhcccC-------CCCCccc-
Q 015591 79 IGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMISLEKFSEMRVSE-------DSTSGEI- 150 (404)
Q Consensus 79 ~G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~- 150 (404)
.|+++|+++|+..++.|+|+++|++++|+++|.+++++++++.+...........++..+..... +.++...
T Consensus 746 ~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1470)
T PLN03140 746 LGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNT 825 (1470)
T ss_pred cHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccccc
Confidence 89999999999998899999999999999999999999999987543333222211111000000 0000000
Q ss_pred --cc----c-CCC-----CCC-C-CccccccCCcccCCCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeC
Q 015591 151 --VK----G-HSR-----STP-M-TNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRP 216 (404)
Q Consensus 151 --~~----~-~~~-----~~~-~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 216 (404)
.. . ... ... . .........+.++..+.+++|+||+|.++.+.+.++.+...+++++|+|||++++|
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 905 (1470)
T PLN03140 826 REVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP 905 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEEC
Confidence 00 0 000 000 0 00011112334566778999999999998776655555555566899999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCcc
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE 296 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~ 296 (404)
|+++||+||||||||||||+|+|+.+++..+|+|.+||.+.....+++.+|||+|+|.+++.+||+||+.|++.++.+..
T Consensus 906 Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~ 985 (1470)
T PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE 985 (1470)
T ss_pred CeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999987666789999999886545567789999999999999999999999988776555
Q ss_pred CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 297 INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 297 ~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
.+.+++.++++++++.++|.+.+|+.+|.+++++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++
T Consensus 986 ~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 986 VSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 55556677899999999999999999998877889999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 377 VDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 377 ~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++|+|||+++|||+.++++.||+++++
T Consensus 1066 ~~~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1066 VDTGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred HHCCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 8889999999999998899999998863
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-70 Score=620.65 Aligned_cols=392 Identities=35% Similarity=0.614 Sum_probs=308.4
Q ss_pred CceeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCCccccC--C----
Q 015591 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPRWQKML--P---- 74 (404)
Q Consensus 1 ~fr~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~~~~~~--~---- 74 (404)
+|++++|++||++.|+.+++++++++++|+||+||+++||+||+|++||||++|||||++.|||++..++|.. |
T Consensus 549 ~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~ 628 (1394)
T TIGR00956 549 LFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGG 628 (1394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999841 1
Q ss_pred ------------------C-CcchhhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhh
Q 015591 75 ------------------T-NTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMISLEK 135 (404)
Q Consensus 75 ------------------~-~~~~G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (404)
| ..+.|++||+. +|.+...|+|+++|++++|+++|.++.++++++.+...........++
T Consensus 629 y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~ 707 (1394)
T TIGR00956 629 YDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRR 707 (1394)
T ss_pred CCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEeecc
Confidence 1 13579999985 455566899999999999999999999999999875433222211111
Q ss_pred h-h-h-hcc-cC-----CCCCccccccCCCCCCCCccccccCCcccCCCCcEEEEeceeEEeeccccccccccccCceee
Q 015591 136 F-S-E-MRV-SE-----DSTSGEIVKGHSRSTPMTNKESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRL 206 (404)
Q Consensus 136 ~-~-~-~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~i 206 (404)
. . . ... .+ .+.++..............................++|+||+|.++. +.+++++
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~---------~~~~~~i 778 (1394)
T TIGR00956 708 GSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKI---------KKEKRVI 778 (1394)
T ss_pred ccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEEecC---------CCCCcEe
Confidence 0 0 0 000 00 00000000000000000000000000000112335899999998742 1234679
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESV 285 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l 285 (404)
|+|||+++++||++||+||||||||||||+|+|+.+++ +.+|+|.+||++.. ..+++.+|||+|++.+++.+||+||+
T Consensus 779 L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L 857 (1394)
T TIGR00956 779 LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESL 857 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeecccccCCCCCCHHHHH
Confidence 99999999999999999999999999999999987643 34699999999874 35678899999999999999999999
Q ss_pred HHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHH
Q 015591 286 IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS-IIFMDEPTTGLDAR 364 (404)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~-iLlLDEPtsgLD~~ 364 (404)
.|++.++.+...+.+++.++++++++.++|.+++|+.+|.++. +||||||||++||+||+.+|+ +|||||||||||+.
T Consensus 858 ~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~ 936 (1394)
T TIGR00956 858 RFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ 936 (1394)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHH
Confidence 9998887655555566778899999999999999999987654 799999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++..|++.|++++++|+|||+++|||+.++++.||+++++
T Consensus 937 ~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L 976 (1394)
T TIGR00956 937 TAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLL 976 (1394)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEE
Confidence 9999999999998889999999999998889999998763
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=372.40 Aligned_cols=202 Identities=26% Similarity=0.367 Sum_probs=177.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|+++||+++| ++.++|+|||++|++||+++|+|||||||||||+||.++..++ +|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~--~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD--SGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC--CceEEECCEecc
Confidence 6788888766 5678999999999999999999999999999999999998875 599999997542
Q ss_pred ----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 259 ----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
....|+.+|+|||+..+||.+||.||+..+...- ...++++.++.+.++++.+||.+.+|.. +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 3457889999999999999999999999875322 2345667778889999999999888876 4579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.||+||+... .-+..||++.
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviF 208 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIF 208 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEE
Confidence 9999999999999999999999999999999999999999999999999999999874 4567888764
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-51 Score=430.08 Aligned_cols=222 Identities=43% Similarity=0.774 Sum_probs=205.9
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEEC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIG 253 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~ 253 (404)
.+..+.|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+...+ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3457999999997643211 3478999999999999999999999999999999999998764 578999999
Q ss_pred CccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 254 GYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 254 G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
|++...+.+++.+|||.|+|.+++++||+|++.|++.+|.+.+.+.++++++++++++.++|.+++|+.+|.++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98877788999999999999999999999999999999999888889999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||+||.+|+.||+||+|||||||||+.++.++++.|++++++|+|||++.|||+.++|++||+++++
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lL 244 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLL 244 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhh
Confidence 99999999999999999999999999999999999999999999889999999999999999999998863
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=371.02 Aligned_cols=201 Identities=27% Similarity=0.392 Sum_probs=178.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+.++++++.|. ...+|+|||++|.+||+++|+||||||||||||+|+|+.+|. +|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~--~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT--SGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccc
Confidence 367888888763 467999999999999999999999999999999999998875 59999999886
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. .....++||+|++.++|..||+||+.++...+. ..++++.+++++.++.+||.+..|+. +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 2 345678999999999999999999999976653 34556677899999999999998886 5689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|++|||||+.+|++|+||||+++||+.++..+.+.|.++.+ .++||++||||.+ |..-+.|+|+++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl 204 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVL 204 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEe
Confidence 99999999999999999999999999999999999999875 4899999999998 667799998764
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=363.59 Aligned_cols=204 Identities=27% Similarity=0.425 Sum_probs=172.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|... .....+|++|||+|++||++||+|||||||||||++|.|+..| ++|.|.++|.++.
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 4578888877431 1225799999999999999999999999999999999999887 4699999997643
Q ss_pred h------hhh-cceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcc-ccccCCCCCC
Q 015591 259 Q------ETF-ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD-SLVGIPGVNG 330 (404)
Q Consensus 259 ~------~~~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~vg~~~~~~ 330 (404)
. ..+ ++.+|||+|+..++|.+||+||+.++..+.... .....+.++++++.+||.+..+ .. +.+
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 1 123 457999999999999999999999987654322 2245677889999999986655 43 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||||+|||||+.+|++|+.||||.+||+++.+.|++++++++++ |+|||++|||+ ++.+.+||++.
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~ 214 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIE 214 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999865 99999999998 57889999874
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=367.52 Aligned_cols=205 Identities=30% Similarity=0.449 Sum_probs=176.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +.++|+||||++++|++++|+||||||||||+|+|+|+.+|. +|+|.+.|.+.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~--~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS--SGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC--cceEEEccccc
Confidence 489999999873 236999999999999999999999999999999999988874 59999999876
Q ss_pred chhhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 VQETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
....-+..+|||||.. ..-+..||+|-+.++...+.. -....+.+++.++++++.+|+.++.|+.+| +||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 5444456899999964 234567999999987543321 111223446889999999999999999987 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+||+.|||||+.+|++|+|||||+|+|+.++..|+++|++++++|+||++++||++ .+.+.||+++.
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~ 211 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVIC 211 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEE
Confidence 999999999999999999999999999999999999999999988999999999998 69999999875
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=369.59 Aligned_cols=207 Identities=26% Similarity=0.313 Sum_probs=181.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|++++|++.|... ..+...+|+|||++|++||+++|+|.||||||||+||+.++..|. +|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt--sG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT--SGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC--CceEEEcCEecc
Confidence 6889999877431 112457999999999999999999999999999999999998875 599999997643
Q ss_pred ------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 ------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
.+.+|+.+|++||+..++.+.||.||+.|+..+.. .++++.++++.++++.+||.+.++.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 24568899999999999999999999999987764 45678889999999999999877765 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||+|||||+.+|+||+.|||||+|||++.+.|+++|+++.++ |.||++|||+++ -+-..||++.++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm 215 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVL 215 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEe
Confidence 99999999999999999999999999999999999999999999865 999999999986 588899998763
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=373.57 Aligned_cols=202 Identities=32% Similarity=0.454 Sum_probs=179.2
Q ss_pred EEEEeceeEEeeccccccccccccC-ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEK-KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
.+.++||++.| + ++.+|+||||++++|+++||+||||||||||+|+|+|+..| .+|+|.++|.+
T Consensus 4 ~i~~~~l~k~~-------------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKY-------------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEe-------------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEe
Confidence 36778888766 4 47899999999999999999999999999999999999887 46999999987
Q ss_pred Cch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 257 KVQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
... ...++.+||++|++.+++.+|++||+.|.+.++.... ....++++++++.++|.+..++.+ ++||+|
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G 140 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGG 140 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHH
Confidence 543 4667889999999999999999999999998876432 345678999999999998555554 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG-RTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++||+||+.+|++|||||||+||||.++..+.+.|++++++| +||+++||+++ ++...||++++
T Consensus 141 ~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~i 209 (293)
T COG1131 141 MKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVII 209 (293)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999876 89999999997 78999999875
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=406.40 Aligned_cols=229 Identities=32% Similarity=0.570 Sum_probs=197.8
Q ss_pred CCcEEEEeceeEEeeccc----------------cccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 175 EPLTVAFQDLKYYIDTPL----------------EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
.+.+++|.+++|.++... ..++++++++++++|+|||+++++||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 457899999999885432 1223444556678999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC
Q 015591 239 GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318 (404)
Q Consensus 239 g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 318 (404)
|+.+++..+|+|.+||++... ..++.++||+|++.+++.+||+||+.|++.++.+.....+++.+.++++++.++|.+.
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987765457999999987643 3446689999999999999999999998876654344455566778999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhc
Q 015591 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 319 ~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~f 398 (404)
.|+.+|....++||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999876677899999999999999999999999999999999999999999999998789999999999998899999
Q ss_pred cccccC
Q 015591 399 DEVKQF 404 (404)
Q Consensus 399 d~~l~~ 404 (404)
|+++++
T Consensus 275 D~iilL 280 (659)
T PLN03211 275 DSVLVL 280 (659)
T ss_pred ceEEEe
Confidence 999763
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=352.76 Aligned_cols=203 Identities=28% Similarity=0.380 Sum_probs=180.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+++++|++++ +++.+++|||++|++||+++|+||||||||||||+|.|+.+|. +|+|+++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~--~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD--KGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC--CCeEEEcCcch
Confidence 58999999865 5788999999999999999999999999999999999999885 59999999975
Q ss_pred ch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCC
Q 015591 258 VQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~ 330 (404)
.. ...++++|++||+-.+|..+||+||+.|..+.+ ...+++..++.+..-++.+||... ++.. +.+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 32 245788999999999999999999999986543 345666777788888999999876 5554 468
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||+||++||||++.+|+||++||||+||||.+...+.++|+++.+. |.|++++|||.+ +++..+|++..
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~ 218 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAV 218 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEE
Confidence 9999999999999999999999999999999999999999999999876 999999999997 79999999865
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=355.54 Aligned_cols=202 Identities=27% Similarity=0.370 Sum_probs=179.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++|+||++.| +++.+++|+|++|++||+++++|||||||||+||+|.++..|+ +|+|++||+++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept--~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT--SGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC--CceEEECCeecc
Confidence 6788888866 4577999999999999999999999999999999999998874 599999999854
Q ss_pred ---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC--CccccccCCCCCCCCH
Q 015591 259 ---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG--IKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~vg~~~~~~LSg 333 (404)
...+|+.+|||-|+-.+||.+||.||+.+...+.. .++++.+++++++++.++|+. +.++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~---w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG---WDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcC---CCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 35689999999999999999999999998765542 345667888999999999974 55554 578999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||.+||||+++|++|++|||+++|||.++.++.+.++++.++ |+|||++|||.. |.+.+.|++.++
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm 209 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVM 209 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEe
Confidence 9999999999999999999999999999999999999999999865 999999999997 899999998763
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=360.65 Aligned_cols=206 Identities=27% Similarity=0.385 Sum_probs=179.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++.+||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++
T Consensus 2 ~L~~~~ls~~y-------------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~--~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGY-------------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK--SGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEE-------------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCCch
Confidence 37788999877 3578999999999999999999999999999999999988874 59999999975
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCcc-CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE-INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...+.+.++||+|.....+.+||+|-+.++..-+.... ...++..+.++++++.+++.+++++.+. +|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccCh
Confidence 4 35678899999999888889999999999865433211 1234455679999999999999998864 7999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||+.|||||+.+|++|+||||||+||...+.++++.++++++ +|+|||++.||++ -.+.+||+++++
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~l 212 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILL 212 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999985 5999999999998 477799998763
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=372.71 Aligned_cols=204 Identities=27% Similarity=0.431 Sum_probs=181.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| ++..+++|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|+++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS--SGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEC
Confidence 48888888876 4578999999999999999999999999999999999999875 59999999986
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...+|.+|+|||+..+||.|||+||+.|+..++. ...+++..++++++++.++|.+..++. +++||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 54 3457889999999999999999999999987432 223455678999999999999988876 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||||+.+|++|+||||.|+||..-+.++...++++.++ |.|.|++|||.+ |.+.+.|++.++
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm 210 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVM 210 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEc
Confidence 9999999999999999999999999999999999999999764 999999999997 899999998763
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-47 Score=369.85 Aligned_cols=202 Identities=26% Similarity=0.393 Sum_probs=181.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. +..+|+|+|+++++||+++|+||||||||||||+|||+..++ +|+|.++|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~--~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT--SGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEC
Confidence 478888888773 222999999999999999999999999999999999998874 59999999986
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
+. ...+|.+++|||+..++|.|||+||+.|+..++. ..+++..++++++.+.+++.++.|+. +.+||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 54 3456889999999999999999999999987764 34567788999999999999999887 357999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+|||||+++|++++||||+|+||+..+..+...|+++.++ |.|+|.+|||.. |.+.+.|++.+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~V 206 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVV 206 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEE
Confidence 9999999999999999999999999999999999999999865 999999999985 89999999875
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=392.63 Aligned_cols=209 Identities=25% Similarity=0.409 Sum_probs=183.4
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...|+|+||+|.|+.. .+.++|+|+||+++|||++|||||||+||||+.++|-.++.|. +|+|.+||+
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt--sG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT--SGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CCeEEECCe
Confidence 3469999999999753 3567999999999999999999999999999999999999875 599999999
Q ss_pred cCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 256 PKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 256 ~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
|+. ...+|+.+|+|.|++.+ +..||+|||.|+......+++..+.+.+.+++++. ++++.+||.+|+.|. .||
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvL-Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~-qLS 606 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVL-FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGS-QLS 606 (716)
T ss_pred ehhhcCHHHHHHHeeeeecccee-ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH--hCccccccccCCccc-ccc
Confidence 854 45688999999998885 56799999999876433344555667778888888 688899999999986 599
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||++||+||||||+||+||.+++..|.+.|.++. +++|||+|+|++| ..+..|+|.+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLS--TV~~Ad~Ivv 674 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLS--TVRHADQIVV 674 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhh--HhhhccEEEE
Confidence 999999999999999999999999999999999999999999987 4699999999997 4778888765
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-47 Score=334.22 Aligned_cols=196 Identities=27% Similarity=0.350 Sum_probs=172.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|+|+||++.|+. ++++|+||||++++||++-|+||||||||||||+|.+...|. +|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt--~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT--RGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC--CceEEECCeecc
Confidence 788999987742 367999999999999999999999999999999999987764 599999999853
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. .-+||.+|+|+|+..+++..||+||+.|+...... ...+.++++.++++.+||.+.++.+ +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~---~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK---PPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCC---CHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 2 34689999999999999999999999999876543 4456678899999999998877765 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~f 398 (404)
||||||++||||++.+|++||.||||.+|||..+++|++++.++.+.|.||+++|||.+ +.+..
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~--lv~~~ 203 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE--LVNRM 203 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH--HHHhc
Confidence 99999999999999999999999999999999999999999999988999999999964 45443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=399.12 Aligned_cols=211 Identities=27% Similarity=0.393 Sum_probs=181.9
Q ss_pred CCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC
Q 015591 174 FEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIG 253 (404)
Q Consensus 174 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~ 253 (404)
.-...++++||+|.|.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|++|
T Consensus 467 ~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~--~G~I~~d 533 (709)
T COG2274 467 KLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ--QGRILLD 533 (709)
T ss_pred ccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEEC
Confidence 34457999999998853 3346999999999999999999999999999999999999875 5999999
Q ss_pred CccC---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 254 GYPK---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 254 G~~~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
|.|+ +...+|+.+|||+|++. +++.|++||+.++......+++..+.+.+.+++.+. .++..+|+.+|+.|. +
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~-Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E~G~-~ 609 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPF-LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGEGGA-N 609 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccch-hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH--hcccccccccccCCC-C
Confidence 9985 44678999999999555 667899999999865443344444555666777777 577889999999876 6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||||++|||||+++|+|||||||||+||+++++.|++.|.++. .|+|+|+++|+++ ....+|+++++
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEc
Confidence 99999999999999999999999999999999999999999999986 6899999999996 68899999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=355.51 Aligned_cols=194 Identities=30% Similarity=0.461 Sum_probs=173.7
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc---cCch-hhhcceeEEeecCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY---PKVQ-ETFARVSGYCEQTDIHSP 277 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~---~~~~-~~~~~~~g~v~Q~~~~~~ 277 (404)
+...+++|||++|+.||++||+|||||||||||++|||+.+|+ .|.|.+||. +... ....|.+|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC--CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 5567999999999999999999999999999999999999875 599999999 5433 334578999999999999
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP 357 (404)
.|||.+||.|+...+. ...+.++.+.+++++++.+.|++..+.. +.+||||||||+++||||+..|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhcccccc-cCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 9999999999987662 2234566778899999999999998876 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 358 TTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 358 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++||..-+.++.+.|+++.++ |.|++++|||++ |+++.+|+++++
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl 211 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVL 211 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEe
Confidence 9999999999999999999876 999999999997 899999999863
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=335.67 Aligned_cols=202 Identities=29% Similarity=0.363 Sum_probs=169.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC---CCCceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK---TTGSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~---~~~~~~G~I~i~G 254 (404)
.++++||+++| +++++|+|||+.|++++++||||||||||||||+++.... +.-..+|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 58899999988 4578999999999999999999999999999999999853 3334679999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGV 328 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~ 328 (404)
+++. ...+|+.+|+|||.+.-|| +|++||+.|+.++..... ++-++.+++.++...|.+- .|++- ..+
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~-~sa- 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLH-KSA- 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhh-CCc-
Confidence 8753 3467899999999999888 899999999987765432 4556788888888888643 34432 222
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~ 400 (404)
.+|||||+|||+|||||+.+|+||+||||||+|||.+..+|-++|.+|+ +.-|||++||++.+ .....|+
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQ-AaRvSD~ 217 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQ-AARVSDY 217 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHH-HHHHhHh
Confidence 4699999999999999999999999999999999999999999999997 57999999999864 3444444
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=358.88 Aligned_cols=202 Identities=27% Similarity=0.407 Sum_probs=176.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~--~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEec
Confidence 589999999773 357999999999999999999999999999999999998764 59999999875
Q ss_pred ch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.+||++|++.+++.+|++||+.|.+.++. ....+..+.++++++.+++.+..++.++ +||+||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHH
Confidence 42 3456789999999888899999999998665432 2223344567899999999888888764 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~i 210 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCV 210 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999877999999999997 78899999875
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=340.72 Aligned_cols=203 Identities=24% Similarity=0.332 Sum_probs=171.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+. +.+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT--RGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEehh
Confidence 678888887631 1246999999999999999999999999999999999988764 699999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ..+++.++|++|++.+++.+||+||+.+....+. ....+..+.+.++++.+++.+..++.. .+||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999999888888999999998754321 122334566889999999987777654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++.
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~ 210 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLT 210 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999777999999999996 67788999875
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-46 Score=393.54 Aligned_cols=203 Identities=41% Similarity=0.723 Sum_probs=184.9
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
+++++|+|+|+++++||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987664 247999999998765667888999999999999999
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~-~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
|+||+.|++.++.+.....+++.+.++++++.+++.+.+|+.+|.++ .++||||||||++|||||+.+|++|+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988776655666777889999999999999999999753 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+.++..+++.|++++++|+|||+++|||+.++++.||+++++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll 240 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEe
Confidence 999999999999999998789999999999998999999999864
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-46 Score=338.14 Aligned_cols=206 Identities=27% Similarity=0.330 Sum_probs=176.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+..|+ +++++|+||||+|++||++||+|+|||||||||++|+|+.++. +|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t--~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT--SGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC--cceEEecccch
Confidence 488999998774 3578999999999999999999999999999999999987764 59999999763
Q ss_pred c------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-----ccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 258 V------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-----PEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 258 ~------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
. .+.+|+.+||++|+..+.+.+||.+|+..+..-+.+ -....++.+..+-+.++++|+.+.+-+..
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 2 245678899999999999999999999987543322 11223455567788999999988777664
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..|||||+|||+|||||+.+|++++.|||+++|||.++++||+.|+++++ .|.|||+..|+.+ -..++|||++-
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riig 220 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIG 220 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheE
Confidence 37999999999999999999999999999999999999999999999986 5999999999997 46789999864
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=334.14 Aligned_cols=203 Identities=28% Similarity=0.386 Sum_probs=181.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
+++.+++++|+. ..++++||||+++.||+++|+|||||||||+|++|++++.|+ +|.|.++|.+..
T Consensus 2 l~v~~l~K~y~~------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~idg~d~~ 67 (245)
T COG4555 2 LEVTDLTKSYGS------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTV 67 (245)
T ss_pred eeeeehhhhccC------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC--CceEEEeecccc
Confidence 566777776643 234899999999999999999999999999999999998875 599999999853
Q ss_pred --hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 --QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 --~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
+...++.+|.++.+..++..+|++|||.|.+++.. ....+.+++++++.+.++|.++.|+.+| ++|.|||
T Consensus 68 ~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~k 139 (245)
T COG4555 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMK 139 (245)
T ss_pred cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhH
Confidence 34568899999987888999999999999988764 3456667889999999999999999987 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||||+++|++++|||||||||..+...+.+.+++++++|++||++||..+ |+.++||+++++
T Consensus 140 qkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivl 206 (245)
T COG4555 140 QKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVL 206 (245)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEE
Confidence 9999999999999999999999999999999999999999888999999999997 899999999864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=344.60 Aligned_cols=201 Identities=28% Similarity=0.385 Sum_probs=169.7
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD--SGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccc
Confidence 5678887662 356999999999999999999999999999999999998764 5999999987532
Q ss_pred ------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 260 ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 260 ------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
..+++.++|++|++.+++.+||+||+.+...... .....+..+.+.++++.+++.+..++.+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 2346779999999888888999999998643221 1223334566788999999987766664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~ 209 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAV 209 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999997 68889999875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=359.88 Aligned_cols=206 Identities=24% Similarity=0.293 Sum_probs=175.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. .+..++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~--~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--SGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEECC
Confidence 6889999887320 11246999999999999999999999999999999999998874 599999998753
Q ss_pred h---h---hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q---E---TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~---~---~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. . ..++.+||++|+..+++.+||+||+.++...+. ...++..+++.++++.++|.+..|... .+||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1 246789999999998999999999999764332 233445567889999999988877764 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||||+.+|++||||||||+||+.++..+++.|++++++ |.|||++||+++ .+.+.||+++++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl 214 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVI 214 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999865 999999999986 688899998753
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=341.87 Aligned_cols=204 Identities=27% Similarity=0.367 Sum_probs=179.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+.++|++|.|+. + ..+|+++|+++++||.++|+|+||||||||+++|+|+.+|. +|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~-----------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~--~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG-----------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT--SGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC-----------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC--CCEEEECCeec
Confidence 3788999998742 2 57999999999999999999999999999999999998875 59999999875
Q ss_pred c----hhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 258 V----QETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~----~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...+++.+|||+|++ ..+...||.|.+.|+..... .+.++..++++++++.+++.+..++. ++.||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g---~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG---LPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC---CCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 4 456788999999985 56788899999999876543 34556778899999999999887776 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||+||.+|+.+|++|+|||||||||+.++..+++.++++.++ |+|+|++|||.+ .+.+.+|+++++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl 212 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL 212 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEE
Confidence 99999999999999999999999999999999999999999999876 799999999997 688899998763
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=336.68 Aligned_cols=200 Identities=30% Similarity=0.429 Sum_probs=168.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD--SGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEcCc
Confidence 5677777652 356999999999999999999999999999999999988764 6999999987532
Q ss_pred -hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 -ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 -~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
...++.++|++|++.+++.+|++||+.+...... .......+.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 2235679999998888888999999988653321 122333456788999999987766654 4699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++ ++.+.+|+++.
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~ 203 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAV 203 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999999999999999876 4999999999986 67889999875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=360.60 Aligned_cols=203 Identities=25% Similarity=0.353 Sum_probs=175.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +++.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~--~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT--SGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC--ceEEEECCEEC
Confidence 378889988762 2356999999999999999999999999999999999998864 69999999876
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...++.+|||+|+..++|.+||+||+.|+...+. ....+..+.++++++.++|.+..++.. .+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG---MPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 42 2235789999999999999999999999865331 233445567899999999988877764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+|||||+.+|++||||||||+||+.++..+.+.|+++.++ |.|+|++|||++ ++.+++|++++
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~v 207 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVV 207 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999998765 999999999996 79999999875
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=358.96 Aligned_cols=203 Identities=24% Similarity=0.390 Sum_probs=177.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT--EGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC--ceEEEECCEEC
Confidence 488999998762 356999999999999999999999999999999999998874 59999999876
Q ss_pred chh-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQE-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
... ..++.+|||+|+..++|.+||+||+.|+...+. ....+..++++++++.+++.+..++.. ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 432 235789999999999999999999999865432 234455678899999999988877763 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++|||||||++||+.++.++.+.|+++.++ |+|+|++|||++ ++++++|+++++
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm 210 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVM 210 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999765 999999999997 799999998753
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=359.74 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=177.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|. +|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~--~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT--AGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC--ceEEEECCEEC
Confidence 388899998763 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...+|.+|||+|+..++|.+||+||+.|+...+. .+..+..+.++++++.++|.+..++.. .+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG---MGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 42 2346789999999999999999999999865431 234455678899999999998887764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++||||||||+||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|+++++
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl 208 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVM 208 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999998765 999999999997 789999998753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=336.53 Aligned_cols=205 Identities=28% Similarity=0.402 Sum_probs=168.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT--SGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC--ceeEEECCEehh
Confidence 3577888876310 00156999999999999999999999999999999999998764 699999998753
Q ss_pred hh-------hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 259 QE-------TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 259 ~~-------~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 21 124579999999888888999999998754432 122233456889999999987766654 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++. .+|+++.+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l 213 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIEL 213 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEe
Confidence 99999999999999999999999999999999999999999999976 5899999999997 454 89998753
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=333.81 Aligned_cols=203 Identities=28% Similarity=0.356 Sum_probs=170.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcc
Confidence 57788888662 1346999999999999999999999999999999999988764 699999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ..+++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999998888888999999998754321 122333467789999999987666654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l 210 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIIL 210 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEe
Confidence 99999999999999999999999999999999999999999998777999999999996 688889998753
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=354.37 Aligned_cols=203 Identities=24% Similarity=0.367 Sum_probs=176.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ ++.+|+||||+|++||++||+||||||||||+++|+|+.+|. +|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~--~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--ceEEEECCEEC
Confidence 589999999773 457999999999999999999999999999999999998874 69999999875
Q ss_pred ch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.+||++|+..+++.+|++||+.+....+. ....+..+.++++++.++|.+..++.++ +||+||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHH
Confidence 32 3456789999999888899999999997654432 2223344567889999999988888764 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il 245 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVL 245 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999877999999999997 789999998753
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=335.05 Aligned_cols=202 Identities=27% Similarity=0.395 Sum_probs=168.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~- 69 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT--SGEVLVDGEPVT- 69 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECc-
Confidence 567888766310 01157999999999999999999999999999999999987764 699999998764
Q ss_pred hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 260 ~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.. ..||||||||+
T Consensus 70 -~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 70 -GPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred -cccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 245679999998888888999999998754331 222333466889999999987666654 47999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++...+|+++.
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 204 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVV 204 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999865 4899999999997 67888999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=332.48 Aligned_cols=199 Identities=23% Similarity=0.396 Sum_probs=169.1
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRF-------------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD--SGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEE-------------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCCchhH
Confidence 567777765 2356999999999999999999999999999999999987764 6999999987643
Q ss_pred hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 260 ~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
..++.++|++|+..+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ .+||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 446679999999888888999999988654332 122334566888999999987666654 47999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 200 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLL 200 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEE
Confidence 9999999999999999999999999999999999998777899999999987 67788998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=358.21 Aligned_cols=203 Identities=26% Similarity=0.364 Sum_probs=176.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee--eEEEECCc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME--GEIKIGGY 255 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~--G~I~i~G~ 255 (404)
.++++||++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 478899998773 35699999999999999999999999999999999999876 46 99999998
Q ss_pred cCch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 256 PKVQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 256 ~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
++.. ...++.+|||+|+..++|.+||+||+.|+...+. ....+..+.++++++.++|.+..++.. ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK---MPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7542 2245779999999999999999999999865432 233445567899999999998888764 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT--GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++|||++ +++.++|+++++
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl 212 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIM 212 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999865 799999999997 789999998763
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=349.57 Aligned_cols=202 Identities=25% Similarity=0.372 Sum_probs=172.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 488899998763 356999999999999999999999999999999999988764 69999999875
Q ss_pred ch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.+||++|++.+++.+|++||+.+....+. ....+..+.++++++.+++.+..++.++ +|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHH
Confidence 32 2346779999999888889999999987543321 2223334567788999999887777653 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~ 207 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCV 207 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999877999999999997 78889999875
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=332.37 Aligned_cols=202 Identities=26% Similarity=0.321 Sum_probs=169.1
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT--SGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEccc
Confidence 5677887662 1246999999999999999999999999999999999988764 6999999986532
Q ss_pred ------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 260 ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 260 ------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
...++.++|++|++.+++.+|++||+.+....+. ...++..+.++++++.+++.+..++.. .+||+
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1245679999999888888999999998754322 122334456788999999987666654 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|+++.+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l 209 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIAL 209 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999998767999999999986 677789998753
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=337.05 Aligned_cols=204 Identities=27% Similarity=0.395 Sum_probs=169.4
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRF-------------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT--SGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEE-------------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CceEEECCEECCC
Confidence 467777765 2356999999999999999999999999999999999988764 6999999987532
Q ss_pred ---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccC-------ChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 260 ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEI-------NSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 260 ---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
.. .++.++|++|++.+++.+||+||+.+.......... ...+..+.++++++.+++.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 12 245689999998888999999999987543221100 12233456789999999987766654
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.+
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l 216 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVL 216 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999998777999999999997 688889998753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=331.97 Aligned_cols=185 Identities=27% Similarity=0.377 Sum_probs=158.7
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCC-CCCCCCHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDI-HSPQITVE 282 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~-~~~~~Tv~ 282 (404)
+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.....++.++|++|++. .++.+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES--SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 56999999999999999999999999999999999988764 6999999987643445667999999863 34568999
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD 362 (404)
||+.+...... ...+.+.++++.+++.+..++.+ ..||||||||++|||||+.+|++|||||||+|||
T Consensus 91 e~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-------AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-------ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99988643221 11245788999999987777664 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 363 ARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 363 ~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 198 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLL 198 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999777999999999997 57788999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=333.20 Aligned_cols=200 Identities=28% Similarity=0.359 Sum_probs=169.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 2 ~~~~~~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKY-------------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT--SGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEE-------------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEecCc
Confidence 567777765 2457999999999999999999999999999999999987764 6999999976432
Q ss_pred --hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 260 --ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 260 --~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
...++.++|++|+..+++.+|++||+.+....+. ....+..+.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHH
Confidence 2345679999999888888999999998754332 122334456889999999987777664 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~ 204 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAI 204 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999876 899999999997 68888999865
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=354.74 Aligned_cols=205 Identities=26% Similarity=0.384 Sum_probs=175.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|+++
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEC
Confidence 377888888762 356999999999999999999999999999999999998764 59999999876
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.++||+|+..+++.+||+||+.|+...+.. .....++..++++++++.++|.+..++.. .+|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 42 23356799999999999999999999998643211 11233445667899999999988777764 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~v 209 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVV 209 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999865 899999999997 78999999875
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=332.54 Aligned_cols=205 Identities=26% Similarity=0.408 Sum_probs=171.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+.. ....++|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--CceEEECCEEcc
Confidence 5778888876310 01126999999999999999999999999999999999998764 699999998754
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ..+++.++|++|++.+++.+||+||+.+....+. ....+..+.++++++.+++.+..++.+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 2 2346779999999888888999999988654321 223344567789999999987777664 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~ 208 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVV 208 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999999999999999999767999999999996 67888999865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-44 Score=330.63 Aligned_cols=202 Identities=25% Similarity=0.358 Sum_probs=169.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+++||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD--SGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCc
Confidence 5677887662 356999999999999999999999999999999999998764 6999999987521
Q ss_pred -----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 260 -----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 260 -----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
...++.++|++|++.+++.+|++||+.+...... .....+..+.++++++.+++.+..++.+ .+||+|
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2346789999999888888999999988643111 1222334456788999999987666654 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l 208 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFM 208 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999877999999999996 678899998753
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=331.04 Aligned_cols=200 Identities=26% Similarity=0.386 Sum_probs=168.1
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT--SGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCc
Confidence 5678887662 356999999999999999999999999999999999988764 6999999987532
Q ss_pred h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 ~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
. ..++.++|++|++.+++..|++||+.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 1 224579999998888888999999988654321 222334456788999999987666664 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~ 203 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAV 203 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEE
Confidence 99999999999999999999999999999999999999764 899999999986 67888999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=335.72 Aligned_cols=205 Identities=28% Similarity=0.386 Sum_probs=170.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD--SGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 378889988763 356999999999999999999999999999999999988764 69999999875
Q ss_pred chh-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQE-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
... ..++.++|++|++.+++.+||+||+.++...+.. ......+..+.++++++.+++.+..++.+ .+||+||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 321 2245799999988888889999999987543211 00112233456788999999987666654 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~ 209 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVV 209 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999764 899999999996 67888999875
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=330.00 Aligned_cols=196 Identities=28% Similarity=0.409 Sum_probs=167.0
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD--SGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCCcccc
Confidence 5677877652 357999999999999999999999999999999999988764 6999999987532
Q ss_pred -hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 -ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 -~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
...++.++|++|++.+++.+|++||+.+....+. . ..+.++++++.+++.+..++.. ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2345679999998888889999999988754321 1 1345788899999987766654 3699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++.
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~ 198 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGI 198 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEE
Confidence 99999999999999999999999999999999999998877999999999997 67788998875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=355.55 Aligned_cols=203 Identities=24% Similarity=0.342 Sum_probs=176.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~--~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD--SGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 489999999773 356999999999999999999999999999999999998874 59999999876
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...++.+|||+|+..++|.+||+||+.|+...+. ....+..+.++++++.++|.+..++.. .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 42 2245779999999999999999999999864332 233444567889999999998887764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||+++ +++.++|+++++
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl 218 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVM 218 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999764 999999999996 789999998753
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=334.53 Aligned_cols=200 Identities=27% Similarity=0.382 Sum_probs=168.6
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRY-------------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD--SGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEe-------------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEeccc
Confidence 567777765 2456999999999999999999999999999999999998764 5999999987532
Q ss_pred ---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 260 ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 260 ---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. .++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..||+||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 12 23568999999888888999999998643322 122334456788999999987766654 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~ 205 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYI 205 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999877999999999997 78889999875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=354.49 Aligned_cols=203 Identities=25% Similarity=0.376 Sum_probs=176.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. +..+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT--AGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 589999998762 356999999999999999999999999999999999998874 59999999875
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...++.+|||+|+..++|.+||+||+.|+...+. ....+..+++.++++.+++.+..++.. .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 32 2356789999999999999999999999864332 233445667899999999988777764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++|||++ +++.++|+++++
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl 223 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIM 223 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999865 4999999999997 789999998753
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=375.34 Aligned_cols=195 Identities=27% Similarity=0.369 Sum_probs=157.9
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL--QGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 35999999998842 235999999999999999999999999999999999998875 5999999987
Q ss_pred Cc--hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 257 KV--QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~--~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
+. ...+++.++||+|++.+ ++.|++|||.++.....++++.++.+...+++.++ .+++..|+.+|+.|. .||||
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~l-F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~--~lp~GldT~ige~G~-~LSGG 474 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHL-FDTTVRDNLRLGRPDATDEELWAALERVGLADWLR--SLPDGLDTVLGEGGA-RLSGG 474 (529)
T ss_pred hhhHHHHHHhheEEEccCccc-ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHH--hCcccccchhccccC-cCCHH
Confidence 43 45678899999997665 56799999998632111111111112222333333 356678999998765 59999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
||||++|||||+++|++||||||||+||+++++.|++.|+++. +++|+|++||++
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999864 589999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=352.31 Aligned_cols=205 Identities=24% Similarity=0.301 Sum_probs=173.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. .+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~--~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT--SGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEECC
Confidence 6788999877310 11357999999999999999999999999999999999998764 699999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...++.+||++|+..+++.+||+||+.+....+. ....+..+.+.++++.+++.+..++.. .+||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1235779999999888888999999998754332 223344567889999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~ 213 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAV 213 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999997 68889999875
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=348.71 Aligned_cols=191 Identities=29% Similarity=0.413 Sum_probs=166.2
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch--hhhcceeEEeecCCCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ--ETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~g~v~Q~~~~~~~~ 279 (404)
+++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT--SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 3467999999999999999999999999999999999998764 6999999987532 23466799999998889999
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
||+||+.+.+..+. ....+..+.++++++.+++.+..++.++ .||||||||++|||||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999998765432 2223345568899999999887777653 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+.++..+++.|++++++|+|||++||+++ ++...||+++.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~ 196 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAI 196 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 99999999999999999877999999999997 78889999875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=336.25 Aligned_cols=205 Identities=27% Similarity=0.330 Sum_probs=167.4
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++||++.|. +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--CceEEECCEeccc
Confidence 5677777652 1156999999999999999999999999999999999988764 6999999987532
Q ss_pred ------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc-----CccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 260 ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL-----APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 260 ------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
...++.++|++|++.+++.+||+||+.+...... ..........+.+.++++.+++.+..++..
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA----- 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----
Confidence 2345679999998888888999999987542110 000111233456788899999977666653
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l 218 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGL 218 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999764 899999999997 678899998753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=355.28 Aligned_cols=203 Identities=26% Similarity=0.386 Sum_probs=174.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|. +|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~--~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT--SGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 378889988762 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.. ...++.++||+|+..+++.+||+||+.|+...+. ....+..+.++++++.+++.+..++.. .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 32 1234679999999889999999999999764332 223344567889999999988777764 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|+++++
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl 207 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVL 207 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999998765 899999999997 788999998753
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=328.94 Aligned_cols=205 Identities=24% Similarity=0.333 Sum_probs=170.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+... ...++|+||||++.+||+++|+|+||||||||.++|+|+..+. +|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~--~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS--SGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC--CceEEECCccc
Confidence 478899998875321 1125999999999999999999999999999999999998874 59999999765
Q ss_pred ch----hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~ 330 (404)
.. ..+.+.+.+|||++ .+.|..||++.|.-+.... ..++. .+++.++++.+||..- +++. +++
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKS--QQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHH--HHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 43 24677899999986 4678999999998765432 22222 3338899999999753 3333 468
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||||++|||||+.+|++||||||||+||...+.+|+++|.+++++ |.|.|+||||.+ .+..+|||+.++
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm 215 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVM 215 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeee
Confidence 9999999999999999999999999999999999999999999999864 899999999997 689999998764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=329.80 Aligned_cols=190 Identities=29% Similarity=0.406 Sum_probs=160.1
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCC-CCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDI-HSPQI 279 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~-~~~~~ 279 (404)
+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.. ...++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT--SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 56999999999999999999999999999999999988764 6999999986532 334677999999864 46778
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
|++||+.+...... .......+.++++++.+++.+..++.. ..||||||||++|||||+.+|++|||||||+
T Consensus 92 t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999988653321 122233456788999999977666653 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++.+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l 207 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVL 207 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999999999999877999999999987 677889998753
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=330.39 Aligned_cols=192 Identities=29% Similarity=0.431 Sum_probs=159.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCC--CCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS--PQIT 280 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~--~~~T 280 (404)
++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++. ..++.++|++|++.+. +.+|
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT--SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 356999999999999999999999999999999999988764 699999998653 3566799999987653 4489
Q ss_pred HHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 281 VEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 281 v~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
++||+.+....... .........+.++++++.+++.+..++.+ ..||||||||++|||||+.+|++|||||||+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999886432110 00112233456788999999976666654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.+
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l 205 (213)
T cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLL 205 (213)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 99999999999999999777999999999997 678889998753
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=332.98 Aligned_cols=205 Identities=26% Similarity=0.321 Sum_probs=170.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT--SGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcc
Confidence 5778888876310 00126999999999999999999999999999999999998764 599999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.. ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 2 1235679999999888888999999988654332 222334556789999999987766654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~ 213 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAV 213 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 67888999875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=341.86 Aligned_cols=197 Identities=24% Similarity=0.288 Sum_probs=165.8
Q ss_pred ccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hh----hcceeEE
Q 015591 196 ERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ET----FARVSGY 268 (404)
Q Consensus 196 ~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~----~~~~~g~ 268 (404)
++.+.++++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.. .. .++.++|
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~--~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT--SGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 4444556678999999999999999999999999999999999998764 5999999987532 11 1357999
Q ss_pred eecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcC
Q 015591 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 348 (404)
Q Consensus 269 v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~ 348 (404)
++|++.+++.+|++||+.+...... .......+.++++++.+++.+..++.+ .+||+|||||++|||||+.+
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcC
Confidence 9999888888999999998754321 122334456788999999987777764 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~ 233 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAI 233 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999998754 899999999987 67889999875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=375.11 Aligned_cols=205 Identities=27% Similarity=0.366 Sum_probs=167.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.+. +++++|+|+||+++|||.+||+||||||||||+++|+|++ |. +|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~--~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY--QGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC--CcEEEECCEec
Confidence 599999997652 2356999999999999999999999999999999999998 63 69999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+|+.++||+|++.+ ++.|++|||.++.....++++..+.+...+++.++ .+++..|+.+|+.|. .||||
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~L-F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~--~lp~G~dT~vge~G~-~LSGG 489 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQL-PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLP--LLPQGLDTPIGDQAA-GLSVG 489 (588)
T ss_pred ccCCHHHHHhheEEecCCCcC-CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHH--hcccccccccccCCC-CCCHH
Confidence 3 45678899999997664 56799999999632111112222222333444554 466778999998865 59999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+++|+|||||||||+||+++++.|++.|+++. +++|+|++||+++ ..+.+|+++++
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl 556 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVM 556 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999885 5899999999995 56789998763
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=329.91 Aligned_cols=212 Identities=33% Similarity=0.598 Sum_probs=172.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceeeEEEECCccC
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT-GSMEGEIKIGGYPK 257 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~-~~~~G~I~i~G~~~ 257 (404)
+.|+|+++.++.. ...+++|+|+||++++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5688888876321 0136799999999999999999999999999999999998761 12469999999876
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHH-HHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNE-VLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.....++.++|++|++.+++.+|++||+.+................+.+++ .++.+++.+..++.+ ..||+|||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544567789999999888888999999998754432221122222334455 788888876666553 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++..++.+.+|+++.+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999987779999999999966799999998753
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=330.52 Aligned_cols=199 Identities=27% Similarity=0.416 Sum_probs=164.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGY-------------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR--SGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeec-------------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcCC
Confidence 567777755 2356999999999999999999999999999999999998764 5999999987532
Q ss_pred ---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-CCCCCccccccCCCCCCCCHH
Q 015591 260 ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-ELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 260 ---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~vg~~~~~~LSgG 334 (404)
.. .++.++|++|++.+++.+|++||+.+...... .....+.+.++++.+ ++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHH
Confidence 11 24569999999888888999999998754321 112234566777777 4665556553 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|+++.+
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 205 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVL 205 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEe
Confidence 999999999999999999999999999999999999999999777899999999986 678899998753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=328.73 Aligned_cols=202 Identities=24% Similarity=0.287 Sum_probs=169.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS--AGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcc
Confidence 57788888762 1246999999999999999999999999999999999998764 699999998653
Q ss_pred h---h---hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q---E---TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~---~---~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. . .+++.++|++|++.+++.+|++||+.+....+. ....+..+.++++++.+++.+..++.. ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 2 1 245679999998887889999999998654321 222333456788899999987666653 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|+++.
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 209 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLT 209 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999777899999999997 67788999875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=334.15 Aligned_cols=202 Identities=25% Similarity=0.345 Sum_probs=170.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE--AGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEcc
Confidence 78889988762 356999999999999999999999999999999999988764 599999998653
Q ss_pred h-----------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 259 Q-----------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 259 ~-----------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
. ...++.++|++|++.+++..|++||+.++..... ........+.+.++++.+++.+..++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 1 2345679999998888888999999988542211 1122334456788999999987666653
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~ 216 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIF 216 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999997 68888999875
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=331.22 Aligned_cols=201 Identities=27% Similarity=0.322 Sum_probs=165.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCceeeEEEECC
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK-----TTGSMEGEIKIGG 254 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~-----~~~~~~G~I~i~G 254 (404)
+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYY-------------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLDG 66 (227)
T ss_pred EEEEEEEEc-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC--CCeEEEECC
Confidence 567777765 2356999999999999999999999999999999999987 55 469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++.. ..+++.++|++|++.++ .+||+||+.+....+.. ....+..+.++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 23466799999987766 79999999987543311 1112234567889999999766555420 24
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.+|++++
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~ 212 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAF 212 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEE
Confidence 79999999999999999999999999999999999999999999999876 99999999997 67889999875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=375.46 Aligned_cols=207 Identities=30% Similarity=0.428 Sum_probs=174.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|.|+. ++++|+|+||++++||.+||+||||||||||+++|+|++++. +|+|++||++
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~--~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT--SGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCeEEECCEe
Confidence 45999999998852 467999999999999999999999999999999999998874 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+|+.++||+|+..+ ++.||+||+.++......+++.++.+.+.+++.++. +++..|+.+|+.|. .|||
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~L-F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge~G~-~LSg 468 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLL-FSGTIRENIALGRPDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGERGV-NLSG 468 (567)
T ss_pred hhhcCHHHHHHhccEEccccee-ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh--CcccccceecCCCc-cCCH
Confidence 53 46788999999996555 558999999998543223344444555556777774 57789999997765 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++||||++++|++|+||||||+||++++..|.+.++++. +|+|+|+|+|+++. + ..+|+++++
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl 536 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVL 536 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEE
Confidence 99999999999999999999999999999999999999999887 67999999999963 4 449999864
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=329.03 Aligned_cols=202 Identities=27% Similarity=0.415 Sum_probs=168.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+. +++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT--SGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEecc
Confidence 356788876621 1156999999999999999999999999999999999998764 699999998753
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ..+++.++|++|+..+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..||+|||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 2 3345679999998888889999999998654332 122233456788999999987766654 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|+++.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~ 204 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAI 204 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEE
Confidence 999999999999999999999999999999999999999875 699999999997 57788999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=334.90 Aligned_cols=205 Identities=24% Similarity=0.302 Sum_probs=167.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. .++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS--SGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ccEEEECCEEhh
Confidence 56788887652 1356999999999999999999999999999999999998764 699999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc-----CccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL-----APEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
. ..+++.++|++|+..+++.+||+||+.++..... ..........+.+.++++.+++.+..++..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 2 1246679999999888888999999987532100 000112233456788999999977666653
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||+++.
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~ 218 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVG 218 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEE
Confidence 479999999999999999999999999999999999999999999998754 899999999997 57788999875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=331.69 Aligned_cols=202 Identities=20% Similarity=0.334 Sum_probs=169.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT--SGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECC
Confidence 56788888662 356999999999999999999999999999999999988764 699999998754
Q ss_pred h-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 259 Q-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...++.++|++|++.+++.+||+||+.+...... ........+.+.++++.+++.+..++.. ..||+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 2345679999998888888999999988642111 1223334456789999999987666653 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 208 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIF 208 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 67788999875
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=354.53 Aligned_cols=206 Identities=26% Similarity=0.337 Sum_probs=175.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|.++
T Consensus 3 ~L~~~nls~~y-------------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~--sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEF-------------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC--CcEEEECCEEc
Confidence 37888998876 3467999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ..+++.+|||+|+..+++.+||+||+.++...+... ........+.++++++.+++.+..++.+ .+|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 32 345678999999988889999999999864322110 0012334567899999999988888765 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++.+++++|++++++|+|||+++|+++ ++.+.||+++++
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l 212 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLL 212 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 788999998753
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=343.00 Aligned_cols=201 Identities=24% Similarity=0.378 Sum_probs=173.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+..
T Consensus 3 l~~~~l~~~~-------------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~--~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLY-------------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD--SGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEE-------------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcc
Confidence 7788888876 2466999999999999999999999999999999999998764 699999998753
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ...++.+||++|++.+++.+|+.||+.+.+.++. ....+..+.++++++.+++.+..++.++ .||+|||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHH
Confidence 2 2356779999999888899999999998765432 2223345568899999999988777754 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||+++.+
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l 205 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIII 205 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999864 799999999997 789999998753
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=334.17 Aligned_cols=199 Identities=27% Similarity=0.361 Sum_probs=168.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECC
Confidence 57788888662 356999999999999999999999999999999999998764 599999998754
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
. ..+.++|++|++.+++..||+||+.+....+. ....+..+.+.++++.+++.+..++.. ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 2 23458999999888888999999988653321 223334566889999999987666553 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++...+|+++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~ 201 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVL 201 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999854 5899999999997 68889999875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=326.57 Aligned_cols=204 Identities=26% Similarity=0.368 Sum_probs=166.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT--SGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEhh
Confidence 5678888876310 01256999999999999999999999999999999999998764 699999998753
Q ss_pred h---h---hhc-ceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 259 Q---E---TFA-RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 259 ~---~---~~~-~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. . .++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+++.+..++.. ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 2 1 122 569999998888888999999998654321 122233456788999999987666654 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|++++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 999999999999999999999999999999999999999999999764 899999999987 44 45798865
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=328.54 Aligned_cols=207 Identities=25% Similarity=0.317 Sum_probs=164.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|... ....++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT--SGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcc
Confidence 5788888876310 00136999999999999999999999999999999999998764 599999998753
Q ss_pred h------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHH-HHHHHHHcCCC-CCccccccCCCC
Q 015591 259 Q------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEF-VNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
. ..+++.++|++|++ .+.+.+|++||+.+........ ......+. ++++++.+++. +..+..+
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 143 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRYP----- 143 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCCc-----
Confidence 2 23466899999987 4567899999998865432211 11111122 35788888885 4455543
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++.+
T Consensus 144 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 219 (228)
T cd03257 144 HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVM 219 (228)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 479999999999999999999999999999999999999999999999765 899999999997 677789998753
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=322.99 Aligned_cols=190 Identities=25% Similarity=0.376 Sum_probs=161.4
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---h----hhhcceeEEeecCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---Q----ETFARVSGYCEQTDIH 275 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~----~~~~~~~g~v~Q~~~~ 275 (404)
++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++. . ...++.++|++|++.+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD--SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 457999999999999999999999999999999999998764 699999998732 1 1245679999998888
Q ss_pred CCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 015591 276 SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLD 355 (404)
++.+|++||+.+....+. .......+.++++++.+++.+..++.+ .+||+|||||++|||||+.+|++||||
T Consensus 88 ~~~~t~~e~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 88 IENETVEENLDLGLKYKK---LSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred ccCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 888999999998654321 122334566789999999987777664 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||+.++..+.+.|+++.++|+|+|++||+++ +.+.+|+++.+
T Consensus 160 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999998767999999999986 34689998764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=350.13 Aligned_cols=191 Identities=23% Similarity=0.282 Sum_probs=166.8
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhh----cceeEEeecCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETF----ARVSGYCEQTDI 274 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~----~~~~g~v~Q~~~ 274 (404)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.. ..+ ++.++||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~--~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT--AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC--ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 4567999999999999999999999999999999999998874 6999999987542 223 578999999999
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlL 354 (404)
+++.+||+||+.|+..... ...++..+++.++++.++|.+..++.. ..||||||||++|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~~---~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLG---WPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999865432 234455677899999999987777664 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++||+.++..+.+.++++.++ |+|||++||+++ ++...+|++++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~v 202 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVI 202 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999754 999999999997 68899999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=339.64 Aligned_cols=207 Identities=24% Similarity=0.344 Sum_probs=170.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ....+.+|+||||++++||++||+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT--SGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ccEEEECCEECC
Confidence 7889999987421 001246999999999999999999999999999999999998764 699999998754
Q ss_pred h-----hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC--CCccccccCCCCCC
Q 015591 259 Q-----ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD--GIKDSLVGIPGVNG 330 (404)
Q Consensus 259 ~-----~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~vg~~~~~~ 330 (404)
. ...++.+|||+|++. .++..||+||+.|+.... ....++..+.++++++.++|. +..++.. ..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 2 245678999999853 445689999999865432 123444556788999999996 4556553 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||+++++
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l 218 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVM 218 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 677889998753
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=379.94 Aligned_cols=204 Identities=25% Similarity=0.306 Sum_probs=165.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+. .++++|+|+||++++||.+||+|+||||||||+|+|+|+++|. +|+|.+||+++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEEc
Confidence 5999999998842 2356999999999999999999999999999999999999874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+|+.+|||+|++.+ ++.|++||+.++.. ...+++..+.+...+++.++ .+++..|+.+|+.|. +||||
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~--~lp~G~dt~ige~G~-~LSGG 592 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRL-MSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIR--AMPMGMHTVISEGGG-TLSGG 592 (686)
T ss_pred CcCCHHHHHhccEEEccCCcc-CcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHH--hccccccccccCCCC-CCCHH
Confidence 3 45688999999997665 56799999998642 11111111111122233333 345567899998764 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+++|++||||||||+||+.+++++++.|+++ ++|+|++||+++ ..+.+|+++++
T Consensus 593 QrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl 657 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVL 657 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEE
Confidence 999999999999999999999999999999999999999875 589999999985 46789998763
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=324.89 Aligned_cols=198 Identities=33% Similarity=0.472 Sum_probs=166.9
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++++|+|+||++++| +++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~~~~~~-------------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRY-------------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEE-------------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCCcccc
Confidence 567787765 2356999999999999 99999999999999999999988764 6999999987532
Q ss_pred --hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 260 --ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 260 --~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
...++.++|++|++.+++.+|++||+.+....+. ....+..+.++++++.+++.+..++.+ ..||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2346779999999888888999999998654432 122233456788999999987666654 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|+++.
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~ 201 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAV 201 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999975 699999999997 57788999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=358.53 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=176.0
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
+..|+|+||+++|.+ ++++|+++||+|++||-+||+|+|||||||++|+|.++.. .+|+|++||+
T Consensus 349 ~~~I~F~dV~f~y~~------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeCC------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 445999999999853 4569999999999999999999999999999999999877 3599999999
Q ss_pred cC---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 256 PK---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 256 ~~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
++ ..+.+|+.+||||| |.++++.||.+|+.++..-...+++.+..++...++.+. .+++.++|.+|+.|. .||
T Consensus 414 dik~~~~~SlR~~Ig~VPQ-d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~--~l~~GY~T~VGerG~-~LS 489 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQ-DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVIS--RLPDGYQTLVGERGL-MLS 489 (591)
T ss_pred eHhhhChHHhhhheeEeCC-cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHH--hccccchhhHhhccc-ccc
Confidence 85 34678999999999 666777899999999864433333333444445556665 467788999999986 499
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||+||||++++|+|+++|||||+||.+++..+++.+.+.. .|+|+|+|.|+.+ +...||+++++
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~DkI~~l 558 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFDKIIVL 558 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCCEEEEE
Confidence 999999999999999999999999999999999999999999844 6999999999985 68899999863
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=331.10 Aligned_cols=200 Identities=27% Similarity=0.367 Sum_probs=168.0
Q ss_pred EEeceeEEeeccccccccccccCc-eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKK-LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
+++|+++.|+ + +.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 ~~~~l~~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 66 (242)
T cd03295 2 EFENVTKRYG-------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT--SGEIFIDGEDIR 66 (242)
T ss_pred EEEEEEEEeC-------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCeEcC
Confidence 5677777652 2 56999999999999999999999999999999999988764 699999998753
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC--CccccccCCCCCCCCH
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG--IKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~vg~~~~~~LSg 333 (404)
. ...++.++|++|++.+++.+|++||+.+....+. .......+.+.++++.+++.+ ..++.. .+||+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRYP-----HELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCH
Confidence 2 2345679999999888888999999998654321 222334566889999999975 555543 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~ 208 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAI 208 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999996 67888999875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=327.34 Aligned_cols=205 Identities=25% Similarity=0.340 Sum_probs=167.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.. ...+++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT--SGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEc
Confidence 38899999977320 01146999999999999999999999999999999999988764 69999999875
Q ss_pred chh------hh-cceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQE------TF-ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~------~~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
... .. ++.++|++|+..+++.+|++||+.+....+. ....+..+.+.++++.+++.+..++.. .+
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 321 12 2569999998888888999999998654321 122334466889999999987766653 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.. +|+++.
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~ 217 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLE 217 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEE
Confidence 999999999999999999999999999999999999999999999875 5899999999996 3443 567653
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-43 Score=335.25 Aligned_cols=203 Identities=22% Similarity=0.319 Sum_probs=170.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD--HGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEc
Confidence 488999998762 356999999999999999999999999999999999998764 69999999875
Q ss_pred ch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 VQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
.. ...++.++|++|+..+++.+|++||+.+...... ........+.+.++++.+++.+..++.+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 32 1235679999998888888999999988643211 1122333456788899999987777664 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~ 216 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYI 216 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 68888999875
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-43 Score=329.70 Aligned_cols=203 Identities=25% Similarity=0.387 Sum_probs=170.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD--AGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEC
Confidence 377888888762 356999999999999999999999999999999999988764 59999999875
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++.+++.+|++||+.+....+. .....+....++++++.+++.+..+... ..|||
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 140 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSG 140 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCH
Confidence 32 1235679999999888888999999987643221 1122334566888999999877666553 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.+++++++|+|||++||+++ ++.+.+|+++.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~ 209 (241)
T PRK10895 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYI 209 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999999999999999999998877999999999986 68889999875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=336.03 Aligned_cols=204 Identities=26% Similarity=0.330 Sum_probs=170.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 378999998773 1245999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++. .++..||+||+.|+.... ........+.+.++++.+++.+..++.. ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 32 234567999999753 456789999999864322 1223334456789999999987777664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|+++++
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l 211 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVL 211 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999987 577899998753
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=338.84 Aligned_cols=207 Identities=26% Similarity=0.343 Sum_probs=170.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ....+++|+||||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYK--------TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT--SGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCC--------CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEECc
Confidence 7899999988421 001245999999999999999999999999999999999998764 599999998753
Q ss_pred -------hhhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 -------QETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 -------~~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
....++.+|||+|++. .++..||+||+.|+.... .....+..+.++++++.++|. +..++.+ .
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 1245667999999752 344679999999875432 122333446788999999996 5556653 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|+++++
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l 219 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVM 219 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 79999999999999999999999999999999999999999999999764 999999999997 688899998753
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=377.93 Aligned_cols=208 Identities=25% Similarity=0.379 Sum_probs=168.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++++|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT--EGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEE
Confidence 35999999998842 2356999999999999999999999999999999999999875 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+|+.++||+|++.+ ++.|++|||.++......+++..+.+...+++.++ .+++..|+.+|+.|. .|||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~l-f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~--~lp~gl~T~i~e~G~-~LSg 604 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRL-FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVR--RHPDGLDMQIGERGR-SLSG 604 (694)
T ss_pred hhhCCHHHHHhccEEECCChhh-hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHH--hCcccccceecCCCC-CCCH
Confidence 53 35678899999997665 55799999998632111111111112222333444 356678999998765 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|++||||||||+||+++++.|++.|+++. +++|+|++||+++ ....+|+++++
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl 672 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM 672 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999986 5899999999996 46889998763
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=340.02 Aligned_cols=207 Identities=22% Similarity=0.319 Sum_probs=170.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ......+|+||||++++||++||+||||||||||+++|+|+.+|. +|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEeceecc
Confidence 7889999987421 001135999999999999999999999999999999999998774 599999986431
Q ss_pred ---------------------------hhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHH
Q 015591 259 ---------------------------QETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310 (404)
Q Consensus 259 ---------------------------~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 310 (404)
....++.+|||+|++ ..++..||+||+.|+..... ....+..+++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG---VSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcC---CCHHHHHHHHHHHH
Confidence 123467899999974 34566799999998754321 23344456788999
Q ss_pred HHcCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 015591 311 ETIELD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389 (404)
Q Consensus 311 ~~l~l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~ 389 (404)
+.++|. +..++.. ..||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5666653 4799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHhccccccC
Q 015591 390 PSIDIFEAFDEVKQF 404 (404)
Q Consensus 390 ~~~~i~~~fd~~l~~ 404 (404)
++ ++.+.+|+++++
T Consensus 225 ~~-~~~~~adrv~vl 238 (305)
T PRK13651 225 LD-NVLEWTKRTIFF 238 (305)
T ss_pred HH-HHHHhCCEEEEE
Confidence 86 688899999763
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=310.11 Aligned_cols=184 Identities=28% Similarity=0.367 Sum_probs=161.5
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEESVIF 287 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~ 287 (404)
..++.|+.||++||+||||||||||||+|+|+..|. +|+|++||++... ...+|-+++++|+.++|..+||.+|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC--CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 578899999999999999999999999999999875 5999999998543 3356778999999999999999999998
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~ 367 (404)
+..... .-.++.++.++.+...+|+.++.+++- .+||||||||+++||+|+++-+||+||||+|+|||.-+.
T Consensus 95 Gl~P~L---kL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL---KLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc---ccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 753221 123456678999999999999888773 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 368 IIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 368 ~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++..++.++++ ++.|++++||+|+ ++..+.|+++.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~f 202 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVF 202 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEE
Confidence 99999999986 4999999999998 78888888764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=330.10 Aligned_cols=204 Identities=22% Similarity=0.280 Sum_probs=170.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEc
Confidence 388999998763 356999999999999999999999999999999999998764 59999999765
Q ss_pred ch----------------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCc-c
Q 015591 258 VQ----------------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK-D 320 (404)
Q Consensus 258 ~~----------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~ 320 (404)
.. ..+++.++|++|++.+++.+|++||+.++..... ........+.+.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 21 2345679999999888888999999987542111 122334456778899999997653 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccc
Q 015591 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 321 ~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~ 400 (404)
+. +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 44 2479999999999999999999999999999999999999999999999877999999999987 67778999
Q ss_pred cccC
Q 015591 401 VKQF 404 (404)
Q Consensus 401 ~l~~ 404 (404)
++.+
T Consensus 222 i~~l 225 (257)
T PRK10619 222 VIFL 225 (257)
T ss_pred EEEE
Confidence 8753
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=336.72 Aligned_cols=207 Identities=27% Similarity=0.368 Sum_probs=170.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|++|.|+.. ....+.+|+||||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT--EGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC--CcEEEECCEECc
Confidence 6889999988421 001135999999999999999999999999999999999998764 599999998753
Q ss_pred -------hhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 -------QETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 -------~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
...+++.+|||+|++ ..++..||.||+.|+..... ....+..+.+.++++.++|. +..++. +.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFG---IPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 123567899999975 24445799999998754321 23344556788999999995 455554 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l 217 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLL 217 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 79999999999999999999999999999999999999999999999877999999999996 677899998763
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=328.70 Aligned_cols=202 Identities=25% Similarity=0.338 Sum_probs=167.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~---~~G~I~i~G~ 255 (404)
++++||++.|+ ++.+++|+||++++||+++|+|+||||||||+++|+|+.+|.+ .+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 67888888763 3469999999999999999999999999999999999987631 1699999998
Q ss_pred cCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC----CCccccccCC
Q 015591 256 PKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----GIKDSLVGIP 326 (404)
Q Consensus 256 ~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~vg~~ 326 (404)
++.. ...++.++|++|+..+++ .|++||+.+....+. .....+..+.++++++.+++. +..++.
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7532 234667999999887777 999999998754331 112233445678899999997 444444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~ 215 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAF 215 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999876 599999999997 68889999875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=327.54 Aligned_cols=202 Identities=25% Similarity=0.359 Sum_probs=169.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEec
Confidence 377888888763 356999999999999999999999999999999999998764 59999999864
Q ss_pred c---------hhhhcceeEEeecCCCCCCCCCHHHHHHHHh-hhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 258 V---------QETFARVSGYCEQTDIHSPQITVEESVIFSA-WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
. ....++.++|++|++.+++.+|++||+.+.. ... .....+..+.+.++++.+++.+..++..
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 1234567999999988888899999997532 111 1122233456788999999987667654
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++.
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~ 213 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVY 213 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 479999999999999999999999999999999999999999999999767999999999997 67788998865
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=384.85 Aligned_cols=211 Identities=28% Similarity=0.392 Sum_probs=180.1
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
....++|+||+|+|+.. .+.++|+|+||.|++|+.+||||||||||||++++|.+++.|. +|+|++||
T Consensus 347 ~~g~ief~nV~FsYPsR----------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~--~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR----------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT--SGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCC----------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CceEEEcC
Confidence 34579999999999753 3457999999999999999999999999999999999999875 59999999
Q ss_pred ccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 255 YPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 255 ~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
.++. ...+|..+|.|+|+|. ++..|++||+.|+.......++.++.+.+.+.+++. .+++..|+.+|+.|+. |
T Consensus 415 ~di~~~~~~~lr~~iglV~QePv-lF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~q-L 490 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPV-LFATTIRENIRYGKPDATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERGVQ-L 490 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechh-hhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCCCC-C
Confidence 9854 3567889999999885 567899999999864433334444555556677776 5788899999999874 9
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||++|||||+++|+|||||||||+||+++++.|+++|+++. .|+|.|+++|++| .|-+ .|+++++
T Consensus 491 SGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~ 560 (1228)
T KOG0055|consen 491 SGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVM 560 (1228)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEE
Confidence 9999999999999999999999999999999999999999999876 6999999999998 4554 8888753
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=370.65 Aligned_cols=201 Identities=24% Similarity=0.352 Sum_probs=166.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+. +++++|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID--EGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC--CceEEECCEEh
Confidence 5999999998742 2356999999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~~ 327 (404)
. ...+++.++||+|++.++ +.|++|||.++.. +..+. +.++++++.. .+++..|+.+|+.|
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~----~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLF-NDTIANNIAYART----EQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceee-cchHHHHHhcCCC----CCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 3 356788899999976654 5799999998531 11111 2233333333 35667899999876
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++|||||+++|++|+||||||+||+.++..+++.|+++. +++|+|+|||+++ ..+.||+++.+
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l 551 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVV 551 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999875 5799999999995 57889998763
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=336.25 Aligned_cols=205 Identities=24% Similarity=0.340 Sum_probs=171.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.. +.+.+|+|+||+|++||++||+|+||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE--SGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 38899999987420 1245999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++ ..++..||+||+.|+.... ....++..+.++++++.+++.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 32 34567799999986 3677889999999875432 2233444567889999999987777664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|+++++
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l 213 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVM 213 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999987 45 579998753
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=328.29 Aligned_cols=204 Identities=28% Similarity=0.299 Sum_probs=168.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 255 (404)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 78888888762 356999999999999999999999999999999999987642 35799999998
Q ss_pred cCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccCCCC
Q 015591 256 PKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGIPGV 328 (404)
Q Consensus 256 ~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~~~~ 328 (404)
++. ...+++.++|++|++.+++.+|++||+.++...+.. .....+..+.+.++++.+++.+ ..++. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 753 234567899999988888899999999986533211 0122333456788999998854 23443 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|+|++||+++ ++.+.+|+++.
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 217 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQ-QAARISDYVAF 217 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 4799999999999999999999999999999999999999999999986 4899999999997 67889999875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=325.56 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=166.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEcc
Confidence 56788887662 356999999999999999999999999999999999998764 699999998653
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ...++.++|++|++.+++.+|++||+.+....+. .......+.+.++++.+++.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG---LSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 1223578999998887789999999988654321 222333456788999999987766654 36999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|+|++||+++ ++. .+|++++
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~ 204 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVV 204 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEE
Confidence 999999999999999999999999999999999999999975 5899999999997 344 5999875
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=335.85 Aligned_cols=208 Identities=24% Similarity=0.326 Sum_probs=170.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|... ....+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++
T Consensus 2 ~i~~~~l~~~~~~~--------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPG--------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS--SGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCC--------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 37889999877310 000146999999999999999999999999999999999998874 69999999875
Q ss_pred ch-------hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ-------ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~-------~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ...++.++|++|++. .++.+|++||+.|+...+. ...++..++++++++.+++. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFG---FSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 31 234567999999852 3446899999988653321 22334456788999999996 5666654
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|+++++
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l 218 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVL 218 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999767999999999997 688899998753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=330.88 Aligned_cols=194 Identities=23% Similarity=0.294 Sum_probs=166.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS--AGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEH
Confidence 489999999773 356999999999999999999999999999999999998764 69999999764
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ..++.++|++|++.+++.+||+||+.+... . ...+.+.++++.+++.+..++.. ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 2 346679999999888888999999987521 0 12345788899999987666653 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|+++.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~ 206 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLL 206 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999865 4899999999997 57788999875
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=320.40 Aligned_cols=200 Identities=24% Similarity=0.313 Sum_probs=170.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+.++|+++.|+ ++.+++++||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|+++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--CeeEEECCEEc
Confidence 488999998762 346999999999999999999999999999999999998764 59999999876
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
.....++.++|++|++.+++.+|++||+.+....+. ....+.++++++.+++.+..++.+ ..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG------RRAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC------CcHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 433345568999998888888899999988653321 112345678889999987777764 369999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|++|||+++.+|++|||||||++||+.+++.+.+.|++++++|+|+|++||+++ ++.+.+|+++.+
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l 210 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTL 210 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEE
Confidence 999999999999999999999999999999999999998878999999999997 788999998753
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=379.77 Aligned_cols=210 Identities=25% Similarity=0.377 Sum_probs=182.7
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
-...++++||+|.|+.. .+.++|+|+|+++++|+.+||||||||||||.+.+|-++++|. +|.|.+||
T Consensus 984 ~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~--~G~V~IDg 1051 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD--AGKVKIDG 1051 (1228)
T ss_pred ceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CCeEEECC
Confidence 44579999999999753 4577999999999999999999999999999999999998874 59999999
Q ss_pred ccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 255 YPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 255 ~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
+++. ...+|+.+|.|.|+|.+ ++.|++|||.|+..-....++.++.+.+.+++++. .|++.+||.+|+.|. +|
T Consensus 1052 ~dik~lnl~~LR~~i~lVsQEP~L-F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG~-QL 1127 (1228)
T KOG0055|consen 1052 VDIKDLNLKWLRKQIGLVSQEPVL-FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERGV-QL 1127 (1228)
T ss_pred cccccCCHHHHHHhcceeccCchh-hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcccC-cC
Confidence 9854 45688999999998875 56799999999922112234555667778888887 799999999999987 59
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||++||||+++||+||||||+||+||+++++.|+++|++.. .|+|.|+|+|++|. ...+|.+.+
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~V 1196 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAV 1196 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEE
Confidence 9999999999999999999999999999999999999999999976 69999999999984 778887765
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=326.27 Aligned_cols=206 Identities=20% Similarity=0.260 Sum_probs=164.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+..+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 5678887662 356999999999999999999999999999999999984211356999999987532
Q ss_pred ---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC--c--cCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCC
Q 015591 260 ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLA--P--EINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNG 330 (404)
Q Consensus 260 ---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~--~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~ 330 (404)
.. .+..++|++|++.+++.+|++||+.+....... . .....+..+.+.++++.+++. +..++.++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 12 233489999998888999999999886432211 0 011222345678899999997 34555432 24
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh-cccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA-FDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~-fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++... +|++++
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~ 217 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHV 217 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEE
Confidence 9999999999999999999999999999999999999999999999877999999999997 56666 798875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=377.36 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=166.1
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. ++++|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|++||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~--~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC--CcEEEECCEE
Confidence 35999999998841 246999999999999999999999999999999999998874 5999999987
Q ss_pred C---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhh-hcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 257 K---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWL-RLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 257 ~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
+ +...+|+.+|||+|++.+ ++.|++|||.++... ...+++.++.+...+++.++ .+++..|+.+|+.|. +||
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~--~lp~gldt~i~e~G~-~LS 613 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYI-FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIE--NMPLGYQTELSEEGS-SIS 613 (708)
T ss_pred HHHcCHHHHHHheEEEecCcee-hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHH--hcccccCcEecCCCC-CCC
Confidence 5 345678899999997665 567999999986311 00011111112222334443 355677999998764 699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||||+++|++||||||||+||+++++.+++.|+++ +|+|+|++||+++ ....+|+++++
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l 681 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVL 681 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEE
Confidence 99999999999999999999999999999999999999999885 4899999999996 46789998763
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=376.95 Aligned_cols=206 Identities=28% Similarity=0.370 Sum_probs=164.9
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. .++++|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW--SGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEe
Confidence 36999999998852 2356999999999999999999999999999999999998874 5999999988
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+|+.++||+|++.+ ++.|++|||.++.......++.++.+...+++.++ .+++..|+.+|+.|. +|||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~l-f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~--~lp~gl~t~i~e~G~-~LSG 618 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFL-FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVIT--SRPGGYDAELAEGGA-NLSG 618 (710)
T ss_pred HHHCCHHHHHhheeEEecCChh-hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHH--hCcCcccceeccCCC-CCCH
Confidence 53 35678999999997665 56799999987531110011111111122233333 355677899998764 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|++||||||||+||+.++++|++.|++ .++|+|++||+++ ....+|+++++
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl 684 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVL 684 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEE
Confidence 999999999999999999999999999999999999999985 4899999999986 46679998763
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=368.05 Aligned_cols=199 Identities=26% Similarity=0.331 Sum_probs=166.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|++|.|+. ++++|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CceEEECCEE
Confidence 35999999998841 245999999999999999999999999999999999999875 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~ 326 (404)
+. ...+++.++||+|++.+++ .|++|||.++.. .+ ++.++++++.++ +++..|+.+|+.
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~~------~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGRD------IS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 53 4577899999999777654 699999998631 11 122344444444 556678999886
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. .||||||||++|||||+++|++|+||||||+||+++++.|.+.|+++. .++|+|++||+++ ....||+++++
T Consensus 474 g~-~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~--~l~~~D~ii~l 547 (592)
T PRK10790 474 GN-NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLS--TIVEADTILVL 547 (592)
T ss_pred CC-CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEE
Confidence 54 699999999999999999999999999999999999999999999986 4799999999985 57789998753
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=339.74 Aligned_cols=208 Identities=23% Similarity=0.342 Sum_probs=169.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. ....+.+|+||||++++||++||+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~--~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK--YGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCEEc
Confidence 48999999988421 001245999999999999999999999999999999999998874 59999999764
Q ss_pred ch-------------------hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-
Q 015591 258 VQ-------------------ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD- 316 (404)
Q Consensus 258 ~~-------------------~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~- 316 (404)
.. ..+++.++||+|++. .++..||+||+.|+.... .....+..++++++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~ 167 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDD 167 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCCh
Confidence 21 235678999999852 344569999998875322 122334456788899999996
Q ss_pred CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH
Q 015591 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE 396 (404)
Q Consensus 317 ~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~ 396 (404)
+..++. +.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+
T Consensus 168 ~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~ 241 (320)
T PRK13631 168 SYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLE 241 (320)
T ss_pred hHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHH
Confidence 455544 3479999999999999999999999999999999999999999999998777999999999987 5778
Q ss_pred hccccccC
Q 015591 397 AFDEVKQF 404 (404)
Q Consensus 397 ~fd~~l~~ 404 (404)
.+|+++++
T Consensus 242 ~adri~vl 249 (320)
T PRK13631 242 VADEVIVM 249 (320)
T ss_pred hCCEEEEE
Confidence 99998753
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=335.10 Aligned_cols=208 Identities=23% Similarity=0.355 Sum_probs=170.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.. ....+.+|+||||+|++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKG--------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT--TGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCC--------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 37899999988421 001246999999999999999999999999999999999998764 59999999875
Q ss_pred ch-------hhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ-------ETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~-------~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ..+++.+|||+|++ ..++..||+||+.|+.... .....+..+.++++++.++|. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP----- 143 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 32 24567899999975 2344469999999875332 123334456788999999996 5556543
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|+++++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l 219 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999975 4999999999997 678899998763
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=339.30 Aligned_cols=218 Identities=21% Similarity=0.247 Sum_probs=173.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.........+..+...+++||||+|++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~--~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT--DGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CcEEEECCEEC
Confidence 4899999998853100000000112356999999999999999999999999999999999998764 69999999875
Q ss_pred ch------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ..+++.++||+|++ .++|.+||.||+.+...... ......+..+.+.++++.+++. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 32 12456799999986 57788999999998654321 1123445566788999999994 344554 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++||||||||++|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|+||||++ .+.+.+|+++++
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl 235 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVM 235 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 579999999999999999999999999999999999999999999999764 999999999997 677889998763
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=317.91 Aligned_cols=194 Identities=28% Similarity=0.322 Sum_probs=165.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~i~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCER-------------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL--AGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEe-------------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEeccc
Confidence 567777765 2356999999999999999999999999999999999998764 5999999987432
Q ss_pred --hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 260 --ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 260 --~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
..+++.++|++|++.+++.+|++||+.+.... ...+.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 34567899999988888889999999885311 12345788899999987766654 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||++. ++...+|+++.
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~ 197 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELD 197 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEe
Confidence 999999999999999999999999999999999999998777999999999986 67778888764
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=328.58 Aligned_cols=202 Identities=26% Similarity=0.322 Sum_probs=166.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 589999998762 356999999999999999999999999999999999987642 2579999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++.. ..+++.++|++|++.+++ +|++||+.+....+. .......+.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87531 234667999999877766 899999998753321 222333456788899888742 23433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
...||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~ 225 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGF 225 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 899999999987 67788999875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=329.39 Aligned_cols=202 Identities=26% Similarity=0.396 Sum_probs=169.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~--~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEEcc
Confidence 67888888763 356999999999999999999999999999999999987764 699999998653
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
. ...++.++|++|++.+++.+|++||+.+...... .......+.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 2345679999998877788999999988643211 112233456788999999987667664 4799999
Q ss_pred HHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELV------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||++|||||+ .+|++|||||||+|||+.++..+.+.|++++ ++|+|||++||+++ ++...+|+++++
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 214 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLL 214 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 99999999999 5999999999999999999999999999987 56999999999987 678899998753
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=328.01 Aligned_cols=202 Identities=25% Similarity=0.319 Sum_probs=168.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID--EGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcc
Confidence 35778888662 356999999999999999999999999999999999988764 699999998652
Q ss_pred h----------------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccc
Q 015591 259 Q----------------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322 (404)
Q Consensus 259 ~----------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 322 (404)
. ...++.++|++|++.+++..|++||+.++..... ........+.+.++++.+++.+..++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 1 1346779999998888888999999988642111 122333445678899999998766655
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
. ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++...+|++
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 479999999999999999999999999999999999999999999998764 899999999997 678889998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
++
T Consensus 218 ~~ 219 (252)
T TIGR03005 218 CF 219 (252)
T ss_pred EE
Confidence 75
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=328.31 Aligned_cols=205 Identities=21% Similarity=0.261 Sum_probs=169.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT--GGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC--cceEEECCEEC
Confidence 488999998762 357999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC----------ccC--ChhhHHHHHHHHHHHcCCCCCccc
Q 015591 258 VQ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLA----------PEI--NSKTKAEFVNEVLETIELDGIKDS 321 (404)
Q Consensus 258 ~~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~----------~~~--~~~~~~~~~~~~l~~l~l~~~~~~ 321 (404)
.. .. .+..++|++|++.+++.+|++||+.++...... ... ...+..+.+.++++.+++.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 32 12 234588999998888999999999986431110 000 111233567888999999876666
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccc
Q 015591 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 322 ~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~ 400 (404)
.. ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 54 479999999999999999999999999999999999999999999999765 899999999997 68889999
Q ss_pred ccc
Q 015591 401 VKQ 403 (404)
Q Consensus 401 ~l~ 403 (404)
++.
T Consensus 224 i~~ 226 (255)
T PRK11300 224 IYV 226 (255)
T ss_pred EEE
Confidence 875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=322.19 Aligned_cols=206 Identities=29% Similarity=0.396 Sum_probs=168.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. .....+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CeeEEECCEEc
Confidence 48899999877320 00135999999999999999999999999999999999998764 59999999875
Q ss_pred ch---hh---h-cceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQ---ET---F-ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~---~~---~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
.. .. . ++.++|++|++.+++.+|++||+.+....+. .......+.+.++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 32 11 1 3579999998888888999999988653321 122334567889999999987666653 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|+++.+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l 219 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRL 219 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998754 899999999997 45 559998753
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=320.90 Aligned_cols=197 Identities=27% Similarity=0.382 Sum_probs=172.2
Q ss_pred ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCCCC
Q 015591 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTDIH 275 (404)
Q Consensus 200 ~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~~~ 275 (404)
+++...+++||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. +..+..++..||...+
T Consensus 13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~--~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC--CceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 447788999999999999999999999999999999999999985 5999999998643 2345678889999999
Q ss_pred CCCCCHHHHHHHHhhhhc--------Ccc-CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh
Q 015591 276 SPQITVEESVIFSAWLRL--------APE-INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV 346 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~ 346 (404)
|+.+||.||+..++..+. +.. ....+..+++.++++.++|.+.+|...+ +||+||||||.|||||+
T Consensus 91 F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa 165 (250)
T COG0411 91 FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALA 165 (250)
T ss_pred cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHh
Confidence 999999999998865331 111 1234556788999999999999999875 69999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+|++|+||||.+||.+.....+.+.|+++.++ |.||++|.||++ -++.+||++.++
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl 223 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVL 223 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEec
Confidence 999999999999999999999999999999874 799999999998 699999999764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=326.38 Aligned_cols=201 Identities=21% Similarity=0.340 Sum_probs=165.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|..++. +|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT--SGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CceEEECCEec
Confidence 488899998762 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-CCCCCccccccCCCCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-ELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~vg~~~~~~LS 332 (404)
.. ...++.++|++|+..+++..||+||+.++.... ......+.++++++.+ ++.+..+.. ...||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 32 124567999999988888899999998864221 1112233456667766 455444443 24799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l 210 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVL 210 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 688999998753
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=333.05 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=171.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~--~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS--SGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ccEEEECCEEC
Confidence 488999999773 1246999999999999999999999999999999999998764 69999999875
Q ss_pred c-----hhhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 V-----QETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~-----~~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. ...+++.++|++|++. .++..|++||+.+..... .....+..+.++++++.+++.+..++.. ..|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 2 1245678999999763 345689999998865332 1223344567889999999987777764 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||+++++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l 215 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVM 215 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999765 999999999997 577789998763
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=362.55 Aligned_cols=200 Identities=28% Similarity=0.428 Sum_probs=166.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+. +++++|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+|.+||.++
T Consensus 320 ~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEeh
Confidence 5999999998842 2246999999999999999999999999999999999998875 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~~ 327 (404)
. ...+++.++||+|++.++ +.|++||+.++... .+ ++.+.++++..+ +++..|+.+|+.|
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~-----~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g 456 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLF-AGTIAENIRLARPD-----AS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGG 456 (529)
T ss_pred hhCCHHHHHhheEEEcCCCccc-CcCHHHHHhccCCC-----CC----HHHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence 3 356788999999977655 57999999986321 11 122333344333 4456788998866
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
. .||||||||++|||||+++|++|+||||||+||+.+++.+.+.++++. .++|+|++||+++ ....+|+++++
T Consensus 457 ~-~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 457 A-GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred c-cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4 699999999999999999999999999999999999999999999875 6899999999985 46789999864
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=324.99 Aligned_cols=203 Identities=26% Similarity=0.346 Sum_probs=168.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD--EGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCeecC
Confidence 67888888662 356999999999999999999999999999999999988764 599999998653
Q ss_pred h---h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC--c---cCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 259 Q---E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA--P---EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 259 ~---~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
. . ..++.++|++|++.+++.+|++||+.+....... . ........+.++++++.+++.+..++.+ .
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 2 1 2345699999998888889999999986432110 0 0112233456889999999987766654 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||+++.
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~ 214 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTV 214 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999875 799999999987 68889999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=346.42 Aligned_cols=214 Identities=21% Similarity=0.259 Sum_probs=174.8
Q ss_pred EEEeceeEEeeccc-----------cccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee
Q 015591 179 VAFQDLKYYIDTPL-----------EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME 247 (404)
Q Consensus 179 i~~~~l~~~~~~~~-----------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~ 247 (404)
|+++||++.|.... ...++...++...+|+|+||++++||+++|+||||||||||+++|+|+.+|. +
T Consensus 5 i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~--s 82 (400)
T PRK10070 5 LEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT--R 82 (400)
T ss_pred EEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC--C
Confidence 66777776664321 1112223345566899999999999999999999999999999999998764 5
Q ss_pred eEEEECCccCch---hh----hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcc
Q 015591 248 GEIKIGGYPKVQ---ET----FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320 (404)
Q Consensus 248 G~I~i~G~~~~~---~~----~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 320 (404)
|+|.++|.++.. .. .++.++|++|+..+++.+||+||+.++...+. ....+..+.+.++++.++|.+..+
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhh
Confidence 999999987532 11 23579999999888999999999999764432 223344567889999999988777
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcc
Q 015591 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFD 399 (404)
Q Consensus 321 ~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd 399 (404)
+.. .+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|
T Consensus 160 ~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~D 233 (400)
T PRK10070 160 SYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGD 233 (400)
T ss_pred cCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCC
Confidence 664 47999999999999999999999999999999999999999999999875 4899999999997 6888999
Q ss_pred cccc
Q 015591 400 EVKQ 403 (404)
Q Consensus 400 ~~l~ 403 (404)
+++.
T Consensus 234 ri~v 237 (400)
T PRK10070 234 RIAI 237 (400)
T ss_pred EEEE
Confidence 9875
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=328.15 Aligned_cols=204 Identities=28% Similarity=0.373 Sum_probs=169.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ--SGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--CcEEEECCEEhH
Confidence 67888888762 357999999999999999999999999999999999987764 699999998643
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...++.++|++|+..+++.+|+.||+.++...... .........+.++++++.+++.+..++.. ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 23456799999988777888999999885321100 00111233456788899999987667654 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~ 210 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVV 210 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEE
Confidence 999999999999999999999999999999999999999998767999999999997 78899999875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=326.98 Aligned_cols=203 Identities=24% Similarity=0.302 Sum_probs=165.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 489999999763 346999999999999999999999999999999999987753 2469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC----CCccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----GIKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~vg~ 325 (404)
.++.. ...++.++|++|++..+ .+||+||+.++...... .......+.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeeccccc-cCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 23567799999987766 48999999987533211 11223345677888888873 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++ +++|||++||+++ ++.+.+|+++.
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~ 221 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAF 221 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 35799999999999999999999999999999999999999999999996 4799999999997 67788999875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=319.59 Aligned_cols=199 Identities=25% Similarity=0.364 Sum_probs=164.1
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
.++|+++.|+ ++. .|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~--~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcCc
Confidence 5677877652 222 3999999999999999999999999999999998764 5999999987532
Q ss_pred -hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 -ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 -~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
...++.++|++|+..+++.+|++||+.+....+. .. .....+.+.++++.+++.+..++.. ..||+|||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 1234679999999888888999999987643211 11 1233456788999999987666654 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|+++.+
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 202 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFL 202 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEE
Confidence 9999999999999999999999999999999999999875 4899999999996 677889998753
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=326.77 Aligned_cols=205 Identities=27% Similarity=0.297 Sum_probs=167.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++||++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 378899998763 356999999999999999999999999999999999987763 2479999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++. ...+++.++|++|++.+++.+|++||+.++...+.. ........+.++++++.+++.. ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8753 123566799999998888889999999986543211 0112233456778888888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|+++.
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 220 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAF 220 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 799999999997 67889999875
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=329.44 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=170.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS--EGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCEeh
Confidence 489999998762 356999999999999999999999999999999999988764 59999999864
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...+++.++|++|+..+++.+|+.||+.+....... .........+.++++++.+++.+..++.. .+|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 2 234456799999987778889999999876421110 00111223456788999999977666664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~ 220 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVA 220 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999997 68889999875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=329.29 Aligned_cols=208 Identities=24% Similarity=0.325 Sum_probs=171.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-MEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~-~~G~I~i~G~~ 256 (404)
.++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++.. .+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 378899998762 3569999999999999999999999999999999999887642 36999999986
Q ss_pred Cch--------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc-----cCChhhHHHHHHHHHHHcCCCCCccccc
Q 015591 257 KVQ--------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-----EINSKTKAEFVNEVLETIELDGIKDSLV 323 (404)
Q Consensus 257 ~~~--------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~v 323 (404)
+.. ...++.++|++|++.+++.+|++||+.+......+. ........+.++++++.+++.+..++..
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 531 233567899999988888899999998764211000 0111233457889999999987666654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++...+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 47999999999999999999999999999999999999999999999975 4899999999997 5788999987
Q ss_pred cC
Q 015591 403 QF 404 (404)
Q Consensus 403 ~~ 404 (404)
++
T Consensus 225 ~l 226 (262)
T PRK09984 225 AL 226 (262)
T ss_pred EE
Confidence 53
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=315.60 Aligned_cols=195 Identities=27% Similarity=0.397 Sum_probs=171.7
Q ss_pred ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCCCC
Q 015591 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTDIH 275 (404)
Q Consensus 200 ~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~~~ 275 (404)
++++++++++||+++++||+++|+|||||||||.+.++.|+..++ +|.|.+||.++.. ...|..+||++|+...
T Consensus 13 ~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred hhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEECCcccccCChHHHhhcCcccccccchH
Confidence 345788999999999999999999999999999999999998875 5999999998653 2345679999999999
Q ss_pred CCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 015591 276 SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLD 355 (404)
|..+||+||+......+... ....+++..++++++.+.+.++.+..- ..||||||+|+.|||||+.+|+.++||
T Consensus 91 Fr~LtV~dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred hhcCcHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEec
Confidence 99999999999887665422 223455667889999999999998863 369999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|+||.+...|.++++.|+++|..|++|-|+.. |.+++|||...
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYI 211 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYI 211 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEE
Confidence 999999999999999999999999999999999997 89999998653
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=326.77 Aligned_cols=204 Identities=26% Similarity=0.349 Sum_probs=167.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 378899998763 356999999999999999999999999999999999987642 2479999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++. ....++.++|++|+..+++.+|++||+.++...+. ........+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 8752 12456779999998888888999999988754321 1122333456788898888742 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|+++.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~-~~~~~~d~i~~ 219 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQ-QAARVSDQTAF 219 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhCCEEEE
Confidence 34799999999999999999999999999999999999999999999986 4799999999987 68889999875
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=331.25 Aligned_cols=202 Identities=21% Similarity=0.299 Sum_probs=168.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ +++.+|+||||+|++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ--KGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEECC
Confidence 57788888763 1245999999999999999999999999999999999998764 699999998753
Q ss_pred h----hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 259 Q----ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...++.++|++|++. .++..|++||+.+..... ........+.++++++.+++.+..++.. ..||+
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999864 466789999998865332 1233344566888999999987777654 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++ ..+|+++.+
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l 208 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVM 208 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 45 569998753
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=330.65 Aligned_cols=201 Identities=23% Similarity=0.310 Sum_probs=166.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ--KGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ccEEEECCEEcc
Confidence 57788888662 356999999999999999999999999999999999988764 699999998752
Q ss_pred h-----hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q-----ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~-----~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...++.++|++|++. .++..|+.||+.+....+. ....+..+.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG---VPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 234567999999764 3456689999988643321 222333456788999999987766654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~ 208 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYV 208 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999767999999999997 67788999875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=327.05 Aligned_cols=204 Identities=27% Similarity=0.370 Sum_probs=168.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD--AGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCEEcc
Confidence 56788887662 457999999999999999999999999999999999988764 599999998753
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...++.++|++|+...++.+||+||+.++...... ......+..+.+.++++.+++.+..++.+ ..||+|
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 2 23456789999987777889999999885321100 00111233456788999999987667664 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 209 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVV 209 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999867899999999997 68889999875
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=320.93 Aligned_cols=195 Identities=23% Similarity=0.351 Sum_probs=165.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~l~~v~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRF-------------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT--SGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEE-------------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEeccc
Confidence 567777765 2356999999999999999999999999999999999988764 6999999987543
Q ss_pred hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 260 ~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
.. ++.++|++|++.+++.+|++||+.+....+. .. .+.+.++++.+++.+..++.. ..||+|||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 3578999998888888999999987654321 11 235678899999987776654 46999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 196 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGI 196 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEE
Confidence 9999999999999999999999999999999999999777999999999997 68889999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=396.16 Aligned_cols=212 Identities=22% Similarity=0.332 Sum_probs=174.6
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC------------
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG------------ 244 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~------------ 244 (404)
..++|+||+|.|+.. .++++|+|+||++++|+.+||+||||||||||+++|.|+++|.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 359999999998531 1346999999999999999999999999999999999998872
Q ss_pred ----------------------------------------ceeeEEEECCccCc---hhhhcceeEEeecCCCCCCCCCH
Q 015591 245 ----------------------------------------SMEGEIKIGGYPKV---QETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 245 ----------------------------------------~~~G~I~i~G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+.+|+|++||.++. ...+|+.++||+|++.+ ++.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L-F~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML-FNMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc-ccccH
Confidence 14799999999853 46788999999997665 57899
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
+|||.++.......++..+.+.+.++++++ .|++..|+.+|+.|. .||||||||++|||||+++|+|||||||||+|
T Consensus 1313 reNI~~g~~~at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLLDEaTSaL 1389 (1466)
T PTZ00265 1313 YENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLDEATSSL 1389 (1466)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHH--hCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 999999743211122222333344555555 577889999998765 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 362 DARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+++++.|++.|+++. .+++|+|+|+|+++ ....+|+++++
T Consensus 1390 D~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl 1431 (1466)
T PTZ00265 1390 DSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVF 1431 (1466)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEE
Confidence 9999999999999986 36899999999996 46789999864
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=330.80 Aligned_cols=206 Identities=25% Similarity=0.346 Sum_probs=166.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ....+++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~--------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAG--------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT--QGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCC--------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcc
Confidence 7889999877320 000135999999999999999999999999999999999998764 699999998753
Q ss_pred h-------hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 Q-------ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 ~-------~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
. ..+++.++|++|++. .++..|++||+.+...... ....+..+.++++++.+++. ...++.+ .
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFG---VSQEEAEALAREKLALVGISESLFEKNP-----F 144 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCCc-----c
Confidence 2 234567999999752 3345799999998643321 12233345678889999996 3455553 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 217 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYV 217 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEE
Confidence 79999999999999999999999999999999999999999999999767999999999996 67788999875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=315.20 Aligned_cols=187 Identities=26% Similarity=0.346 Sum_probs=159.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD--AGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEcc
Confidence 56788887662 356999999999999999999999999999999999998764 599999998753
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ...++.++|++|++.+++.+|++||+.+....+. . ...+.++++++.+++.+..++.+ ..||+|||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345678999998888888999999998754321 1 22356788999999987666654 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 9999999999999999999999999999999999999998777899999999986
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=323.11 Aligned_cols=193 Identities=28% Similarity=0.371 Sum_probs=161.6
Q ss_pred ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch--hhhcceeEEee-cCCCCC
Q 015591 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ--ETFARVSGYCE-QTDIHS 276 (404)
Q Consensus 200 ~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~g~v~-Q~~~~~ 276 (404)
+++.+++|+|+||++++||+++|+|+||||||||+++|+|+.+|. +|+|.++|.+... ...++.++|++ |.+.++
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT--SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 345678999999999999999999999999999999999988764 6999999986422 23456789997 445667
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
+.+|++||+.+....+. ....+..+.++++++.+++.+..++.+ ..||+|||||++|||||+.+|++|||||
T Consensus 108 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 108 WDLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred CCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 88999999988654321 122333456778899999987777764 3699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 226 (236)
T cd03267 180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLV 226 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 99999999999999999998764 899999999997 67888999875
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=324.20 Aligned_cols=207 Identities=25% Similarity=0.314 Sum_probs=165.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--T-GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.. + .+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 589999999773 3469999999999999999999999999999999999753 1 13579999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
+++.. ..+++.++|++|++.+++ .|++||+.++...+.. .......+.++++++.+++.+........+ +.
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~ 148 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHES-AL 148 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhCC-cc
Confidence 87531 234677999999877776 5999999987533211 112233456778888888854211111111 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|+++.
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~ 220 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAF 220 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEE
Confidence 799999999999999999999999999999999999999999999986 4799999999997 67789999875
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=323.50 Aligned_cols=207 Identities=22% Similarity=0.312 Sum_probs=164.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC---CCCCceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR---KTTGSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~---~~~~~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+ .++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 478899988762 35699999999999999999999999999999999996 23322469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++.. ...++.++|++|++.+++ .|++||+.++...+.. .......+.++++++.+++.+..+.....+ +.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKES-AF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhCC-cc
Confidence 87532 234667999999877665 6999999887543311 111223456788899888864221111111 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|+++.
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~ 217 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAF 217 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEE
Confidence 799999999999999999999999999999999999999999999985 5899999999997 68889999875
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=326.01 Aligned_cols=205 Identities=23% Similarity=0.314 Sum_probs=166.8
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEE
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--T-GSMEGEIKI 252 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i 252 (404)
...++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ + .+.+|+|.+
T Consensus 11 ~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 44589999999773 3469999999999999999999999999999999999865 2 135799999
Q ss_pred CCccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----Cccccc
Q 015591 253 GGYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLV 323 (404)
Q Consensus 253 ~G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~v 323 (404)
+|.++.. ..+++.++|++|+..+++ .|++||+.+...... .....+..+.++++++.+++.+ ..++.
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 153 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS- 153 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC-
Confidence 9987531 234678999999877666 899999988653221 1222333456788999988743 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
...||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.+|+++.
T Consensus 154 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 227 (260)
T PRK10744 154 ----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAF 227 (260)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 34799999999999999999999999999999999999999999999986 4789999999986 67788999875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=322.24 Aligned_cols=198 Identities=25% Similarity=0.326 Sum_probs=162.6
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK--SGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEECCC
Confidence 5677877652 357999999999999999999999999999999999998764 6999999987532
Q ss_pred ---h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-CCCCccccccCCCCCCCCHH
Q 015591 260 ---E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-LDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 260 ---~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~vg~~~~~~LSgG 334 (404)
. ..++.++|++|+..+++.+|++||+.+....+.. ...+..+++++.++ +.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~------~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPR------RSRKIPDEIYELFPVLKEMLGRRG-----GDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc------chHHHHHHHHHHHHhHHHHhhCCh-----hhCCHH
Confidence 1 2345799999998888889999999887543211 11233566777765 455555553 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|+++++
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l 205 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVM 205 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999998864 899999999987 677789998753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=327.78 Aligned_cols=206 Identities=24% Similarity=0.299 Sum_probs=171.1
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA--HGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEE
Confidence 4689999999773 356999999999999999999999999999999999988764 5999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
+.. ...++.++|++|+..+++..|++||+.+....... .........+.++++++.+++.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCC
Confidence 532 23456799999998888889999999875311100 00011223456788999999987666654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|+++.
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~ 216 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIA 216 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999997 68999999875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=329.29 Aligned_cols=203 Identities=25% Similarity=0.359 Sum_probs=169.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEECC
Confidence 77889998773 1235999999999999999999999999999999999988764 699999998753
Q ss_pred h---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 259 Q---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...++.++|++|++. .++..||+||+.+..... ........+.++++++.+++.+..++.+ ..||+|
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 2 345567899999863 345689999998765322 1223334456789999999987777664 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.+
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l 211 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVM 211 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999765 899999999997 688899998753
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=372.78 Aligned_cols=200 Identities=26% Similarity=0.373 Sum_probs=162.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+.. .++++|+|+||+++|||.+||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT--GGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCEE
Confidence 359999999988521 1356999999999999999999999999999999999998875 5999999988
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~ 326 (404)
+. ...+++.++||+|++.+ ++.|++|||.++... .+ ++.+.++++..+ +++..|+.+|+.
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~l-F~gTIreNI~~g~~~-----~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVL-FSGSVRENIAYGLTD-----TP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccc-cccCHHHHHhcCCCC-----CC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 53 35678899999997664 567999999986321 11 122333444333 455678889887
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++|+|||||||||+||+++++.+.+ .. ...++|+|++||+++ ..+.+|+++++
T Consensus 615 G~-~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL 686 (711)
T TIGR00958 615 GS-QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVL 686 (711)
T ss_pred CC-cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEE
Confidence 64 699999999999999999999999999999999999999998 22 235899999999986 46789998763
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=316.12 Aligned_cols=195 Identities=27% Similarity=0.339 Sum_probs=162.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA--AGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEeCc
Confidence 77888888762 356999999999999999999999999999999999987764 699999998743
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
....++.++|++|++.+++.+|++||+.+....+. ...+.+.++++.+++.+..+... ..||+|||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG-------GEELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC-------CcHHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22256678999998888888999999987643321 11234788999999976666554 3699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.. |+++.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~ 197 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELD 197 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEe
Confidence 99999999999999999999999999999999999998777999999999986 3443 76653
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=330.69 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=170.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|.. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~--~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE--AGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 3889999997731 1245999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++. .++..||+||+.++..... ...++..+.++++++.++|.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG---VPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 42 234567999999863 5677899999998754321 223344567889999999987777664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++. .+|+++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l 213 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVM 213 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999997 454 59998753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=356.91 Aligned_cols=208 Identities=21% Similarity=0.297 Sum_probs=173.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+||||++++||+++|+||||||||||+|+|+|+.++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 388999998762 3569999999999999999999999999999999999887633579999999875
Q ss_pred chh----hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQE----TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~~----~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
... ..++.++||+|++.+++.+||+||+.++...+...........+.++++++.+++.+..++.+ .+|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 321 234669999999888889999999998753321111122333456889999999987777765 37999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++++
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l 216 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVI 216 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999987 677889998753
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=307.12 Aligned_cols=187 Identities=27% Similarity=0.402 Sum_probs=166.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
+.+|+|+|+++.+||.++++||||||||||||+++|+.+|. .|+|.+||.++....- ..|.|+|++.++|.+++.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~--~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS--RGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc--cceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 45999999999999999999999999999999999998875 5999999998754332 3489999999999999999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
|+.|+..++. +.++++.+.+.+.+..+||.+..++.+- +||||||||+.|||||+.+|++|+||||+++||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccceE-----eecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999998875 5677888999999999999988877753 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 364 RAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
-+++++.++|-++.+ .|+.+++|||+.+..+| +.+++++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf-latrLvv 205 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIEEALF-LATRLVV 205 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh-hhheeEE
Confidence 999999999999875 59999999999986665 5566554
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=328.41 Aligned_cols=203 Identities=30% Similarity=0.374 Sum_probs=168.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. +++.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT--SGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEECc
Confidence 67888888763 1245999999999999999999999999999999999988764 599999998753
Q ss_pred h-----hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q-----ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~-----~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...++.++|++|++. .++..||+||+.+..... .....+..+.+.++++.+++.+..++.. ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 234677999999753 345579999998764321 1223344466788999999988777764 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||+++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l 210 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVM 210 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999767999999999987 678889998753
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=322.85 Aligned_cols=208 Identities=23% Similarity=0.291 Sum_probs=167.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TG-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 488999998763 3569999999999999999999999999999999999865 32 2469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++.. ..+++.++|++|+..+++.+|++||+.+....... ....+..+.++++++.+++.......... .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGR--VNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87531 23567799999998888889999999876433211 11223345678888888885421111111 135
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||+++.
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~ 219 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAF 219 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEE
Confidence 7999999999999999999999999999999999999999999999975 689999999997 67889999875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=326.21 Aligned_cols=211 Identities=23% Similarity=0.315 Sum_probs=168.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+..-..+ ..+++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEcc
Confidence 78899999874210000 011357999999999999999999999999999999999998764 699999998753
Q ss_pred h---h---hhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 Q---E---TFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 ~---~---~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
. . ..++.++|++|++ .+.+.+|++||+.+...... ........+.+.++++.+++. ...+... .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 2 1 2456799999985 35677999999987643211 122233456688999999995 5556553 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|+++.
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~ 223 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAV 223 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEE
Confidence 79999999999999999999999999999999999999999999999765 899999999987 67788999875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=325.07 Aligned_cols=212 Identities=24% Similarity=0.258 Sum_probs=169.5
Q ss_pred CCCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeE
Q 015591 173 PFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGE 249 (404)
Q Consensus 173 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~ 249 (404)
|.....++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33445699999999773 356999999999999999999999999999999999987541 35799
Q ss_pred EEECCccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccccc
Q 015591 250 IKIGGYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324 (404)
Q Consensus 250 I~i~G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg 324 (404)
|.++|.++.. ...++.++|++|++.+++ .|++||+.++..... ........+.+.++++.+++.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987531 234667999999877666 699999998643221 11222334567788888888532222222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 325 ~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+ +..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++
T Consensus 159 ~~-~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 159 KS-ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred CC-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEE
Confidence 22 35799999999999999999999999999999999999999999999986 4799999999997 68899999875
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=311.14 Aligned_cols=179 Identities=25% Similarity=0.356 Sum_probs=150.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-----hhhcceeEEeecCCC-CC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-----ETFARVSGYCEQTDI-HS 276 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----~~~~~~~g~v~Q~~~-~~ 276 (404)
++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+... ..+++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ--SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 356999999999999999999999999999999999988764 6999999987531 134567999999863 34
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
+..|++||+.+..... .....+..+.++++++.+++.+..++.+ ..||+|||||++|||||+.+|++|||||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4679999999865322 1222333456788999999987777664 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999986
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=362.18 Aligned_cols=201 Identities=24% Similarity=0.357 Sum_probs=166.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|+|+. .++++|+|+|+++++||.++|+|+||||||||+++|+|+++|. +|+|.+||.++
T Consensus 330 ~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD--SGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEeH
Confidence 5999999998742 2346999999999999999999999999999999999998875 59999999874
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~~ 327 (404)
. ...+++.++||+|++. +++.|++|||.++.. ++.+ ++.++++++.++ +++..|+.+|+.|
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~-lf~~Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g 467 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVV-LFNDTIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENG 467 (571)
T ss_pred HhcCHHHHHhhceEEccCcc-cccccHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCC
Confidence 3 3567888999999765 557799999998631 0111 123344444443 4566788898775
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++||||++++|++|+||||||+||+.+++.+++.|+++. .++|+|++||+++ ..+.||+++.+
T Consensus 468 -~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l 540 (571)
T TIGR02203 468 -VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVM 540 (571)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999875 5799999999984 68889998753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=313.82 Aligned_cols=186 Identities=31% Similarity=0.559 Sum_probs=156.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~ 256 (404)
+++|+||+|.|+.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999998642 13467999999999999999999999999999999999987732 357999999987
Q ss_pred Cch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 257 KVQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
+.. ...++.++|++|++.+++.+||+||+.+..... .+.. ...||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 542 235667999999988888999999998753210 2222 2469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+.+|+++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 999999999999999999999999999999999999999999765 678888777665578899999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=325.16 Aligned_cols=204 Identities=24% Similarity=0.299 Sum_probs=166.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 599999999773 356999999999999999999999999999999999987641 2579999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC----ccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI----KDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~vg~ 325 (404)
.++.. ..+++.++|++|++..++ .|++||+.++...+.. ........+.+.++++.+++.+. .++.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCC-CcHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87531 234677999999877666 4999999987543211 01122334567888999898542 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...+|+++.
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~ 234 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAF 234 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEE
Confidence 347999999999999999999999999999999999999999999999865 789999999987 67788999875
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=312.08 Aligned_cols=193 Identities=24% Similarity=0.309 Sum_probs=160.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSR-------------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD--SGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEE-------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEEccc
Confidence 567777765 3467999999999999999999999999999999999988764 6999999986432
Q ss_pred --hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 260 --ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 260 --~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
..+++.++|++|++.+++.+|++||+.+....+. . + .+.+.++++.+++.+..++.+ ..||+||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2345678999998887888999999988643321 1 1 245678899999987766654 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|++||||++.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. .-.+++++
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~---~~~~~~~~ 196 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL---GLVEAREL 196 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc---cccceEEe
Confidence 999999999999999999999999999999999999998777999999999985 22346554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=326.33 Aligned_cols=203 Identities=24% Similarity=0.304 Sum_probs=165.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIG 253 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~ 253 (404)
..++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3599999999773 356999999999999999999999999999999999986531 257999999
Q ss_pred CccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----Ccccccc
Q 015591 254 GYPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVG 324 (404)
Q Consensus 254 G~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg 324 (404)
|.++. ....++.++|++|++.+++ .||+||+.+....+. .. ....+.+.++++.+++.. ..++.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98752 2345667999999887776 599999998764331 11 122345677788877642 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 325 ~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|||++||+++ ++...+|+++++
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 34799999999999999999999999999999999999999999999986 4799999999997 688999998753
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=327.27 Aligned_cols=203 Identities=23% Similarity=0.347 Sum_probs=168.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ--SGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEec
Confidence 4899999997631 2356999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ..+++.++|++|++. .++.+|++||+.+..... .....+..+.++++++.+++.+..++.. ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 32 245678999999863 567789999998864322 1222334456788999999987777664 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ ++|||++||+++. + ..+|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~ 214 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIV 214 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEE
Confidence 9999999999999999999999999999999999999999998765 5999999999973 4 47999875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=349.08 Aligned_cols=200 Identities=28% Similarity=0.442 Sum_probs=167.2
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
+..++.+|++|.|+. + +++++|+|+++++|+.+||+|+||||||||+++|+|+.++. +|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~~-----------g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~--~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYPD-----------G-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT--QGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecCC-----------C-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC--CceEEECCc
Confidence 456777899998753 2 37999999999999999999999999999999999998874 699999998
Q ss_pred cC---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC------CCCccccccCC
Q 015591 256 PK---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL------DGIKDSLVGIP 326 (404)
Q Consensus 256 ~~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l------~~~~~~~vg~~ 326 (404)
+. +...+++.++||+|++.+ +..|++||+.++.... + ++.+.++++..++ ++..|+.+|+.
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~l-f~gTireNi~l~~~~~-----s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~ 453 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYL-FAGTIRENILLARPDA-----S----DEEIIAALDQAGLLEFVPKPDGLDTVIGEG 453 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCcc-ccccHHHHhhccCCcC-----C----HHHHHHHHHHhcHHHhhcCCCcccchhccC
Confidence 74 456789999999997765 5569999999974321 1 2333444444443 45678889987
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
| .+|||||+|||++||||+++++++++|||||+||.++++.|++.|.++++ ++|+|++||++. .....|+|++
T Consensus 454 G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~v 526 (559)
T COG4988 454 G-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVV 526 (559)
T ss_pred C-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEE
Confidence 6 47999999999999999999999999999999999999999999999985 699999999985 5778898875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=340.14 Aligned_cols=194 Identities=21% Similarity=0.285 Sum_probs=166.3
Q ss_pred cccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc----cCc---hhh---h-cceeE
Q 015591 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY----PKV---QET---F-ARVSG 267 (404)
Q Consensus 199 ~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~----~~~---~~~---~-~~~~g 267 (404)
.+++...+|+|+||++++||+++|+|+||||||||+++|+|+.+|. +|+|.++|. ++. ... . ++.++
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~--~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS--RGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 3456678999999999999999999999999999999999998864 599999995 221 111 2 25799
Q ss_pred EeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 268 YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 268 ~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
||+|+..+++.+||+||+.|+...+. ....+..+.+.++++.++|.+..++.. .+||||||||++|||||+.
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~ 181 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAM 181 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999864432 233455667899999999988777764 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|++|||||||+|||+.++..+++.|.++.++ |+|||++|||++ ++.+.+|+++.
T Consensus 182 ~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~v 237 (382)
T TIGR03415 182 DADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAI 237 (382)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999765 999999999997 68899999875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=358.49 Aligned_cols=207 Identities=27% Similarity=0.377 Sum_probs=165.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+. +++++|+|+|+++++||.++|+||||||||||+++|+|+++|. +|+|.+||.++
T Consensus 316 ~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~i 382 (544)
T TIGR01842 316 HLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT--SGSVRLDGADL 382 (544)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEeh
Confidence 5999999998742 2356999999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+++.++||+|++.+++ .|++||+.+........++....+....+++++. +++..|+.+|+.| ..||||
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~~g-~~LSgG 458 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILR--LPDGYDTVIGPGG-ATLSGG 458 (544)
T ss_pred hhCCHHHHhhheEEecCCccccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh--CccccccccCCCc-CCCCHH
Confidence 3 3456788999999877665 5999999864311000111111122233455553 4556688888765 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+++|++||||||||+||++++..+.+.|+++.++|+|+|++||+++ ..+.+|+++.
T Consensus 459 q~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~ 525 (544)
T TIGR01842 459 QRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILV 525 (544)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEE
Confidence 999999999999999999999999999999999999999998656899999999996 4678999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=347.38 Aligned_cols=212 Identities=25% Similarity=0.344 Sum_probs=181.8
Q ss_pred ccCCCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE
Q 015591 171 VLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI 250 (404)
Q Consensus 171 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I 250 (404)
++......++|+||+|.|++ ++++|+||||++.||+.+||+||||+||||++++|.++.+. .+|.|
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv--~sGsI 595 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDP------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV--NSGSI 595 (790)
T ss_pred CccccCCeEEEEEeEEecCC------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc--cCceE
Confidence 34556678999999999864 47899999999999999999999999999999999998775 46999
Q ss_pred EECCccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 251 KIGGYPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 251 ~i~G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
.+||+++. ..++|+.||.|||+.. +++.|+..|++|+..-..++++..+.+.+.+++-+ +++++..++.+|++|
T Consensus 596 ~iDgqdIrnvt~~SLRs~IGVVPQDtv-LFNdTI~yNIryak~~AsneevyaAAkAA~IHdrI--l~fPegY~t~VGERG 672 (790)
T KOG0056|consen 596 TIDGQDIRNVTQSSLRSSIGVVPQDTV-LFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRI--LQFPEGYNTRVGERG 672 (790)
T ss_pred EEcCchHHHHHHHHHHHhcCcccCcce-eecceeeeheeecCCCCChHHHHHHHHHhhHHHHH--hcCchhhhhhhhhcc
Confidence 99999864 3578899999999554 56779999999987655555665566666666554 378999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+ |||||||||+|||+++++|.+++|||+||+||..++++|+..|.+++ .++|.|+++|++|. .-..|.+|+
T Consensus 673 Lk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvAHRLST--ivnAD~ILv 744 (790)
T KOG0056|consen 673 LK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVAHRLST--IVNADLILV 744 (790)
T ss_pred cc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEeeeehh--eecccEEEE
Confidence 86 99999999999999999999999999999999999999999999998 58999999999985 334676665
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=315.95 Aligned_cols=198 Identities=25% Similarity=0.359 Sum_probs=164.6
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++||++.|+ ..++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA--SGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEccc
Confidence 5677877652 1467999999999999999999999999999999998764 6999999987532
Q ss_pred -hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 -ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 -~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
...++.++|++|++.+++.+|++||+.+...... . ......+.++++++.+++.+..++.. ..||+|||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHH
Confidence 2345679999999888888999999987542211 1 11123456788999999987666654 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|+++.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~ 201 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAV 201 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEE
Confidence 99999999999999999999999999999999999998764 899999999987 67788999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=316.31 Aligned_cols=206 Identities=26% Similarity=0.430 Sum_probs=170.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|... .+.+.+|+|+||++++|++++|+|+||||||||+++|+|++++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhH
Confidence 6788888876310 1125799999999999999999999999999999999998876 4699999998753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ...++.++|++|++.+++.+|+.||+.+...... .....+..+.+.++++.+++.+..++.. ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 2 1346789999998888888999999998654321 1223334567889999999987666654 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ +.+.+|+++.+
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 45799998753
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=321.75 Aligned_cols=198 Identities=24% Similarity=0.330 Sum_probs=164.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT--EGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEh
Confidence 378889988762 356999999999999999999999999999999999988764 59999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++.+++ .|++||+.+....+. ...+.+.++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG-------EKNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-------cHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 344667999999877665 699999987543211 1134577889999996 445554 347999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.+
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l 205 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFL 205 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999998764 999999999997 678889998753
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=361.32 Aligned_cols=201 Identities=24% Similarity=0.401 Sum_probs=167.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++++|+|+||++++||.+||+||||||||||+++|+|+++|. +|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~--~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ--QGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEE
Confidence 36999999998742 2246999999999999999999999999999999999998874 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC------CCCccccccCCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL------DGIKDSLVGIPG 327 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l------~~~~~~~vg~~~ 327 (404)
+. ...+++.++||+|++.+ ++.|++||+.++.. +. .++.+.++++.+++ ++..|+.+|+.|
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~l-f~~ti~~Ni~~~~~-----~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g 473 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHL-FSATLRDNLLLAAP-----NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG 473 (574)
T ss_pred hhhCCHHHHHhheeEEcccchh-hcccHHHHhhcCCC-----cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCC
Confidence 53 35678889999997665 45799999998632 11 12334555665555 445788888875
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
. .||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|++||+++. ...+|+++++
T Consensus 474 ~-~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l 546 (574)
T PRK11160 474 R-QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVM 546 (574)
T ss_pred C-CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEE
Confidence 4 699999999999999999999999999999999999999999999986 58999999999973 4679998753
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=360.55 Aligned_cols=206 Identities=26% Similarity=0.367 Sum_probs=164.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+. ++++|+|+|++++|||.++|+|+||||||||+|+|+|+++|. +|+|.+||.++
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~--~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ--SGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEEh
Confidence 5999999998842 245999999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+++.++||+|++.+ +..|++||+.++.....++++....+....++.++ .+++..|+.+++.| ..||||
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~--~lp~gldt~i~~~g-~~LSgG 475 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGL-FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIE--RKPDGYDTVVGERG-RQLSGG 475 (588)
T ss_pred hhCCHHHHHhheEEEecCccc-ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHH--hCcccccchhcCCC-CCCCHH
Confidence 3 35678899999997665 56799999998631110011111111112233333 25566788888765 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+++|++|+||||||+||+.+++.+++.|+++. +++|+|++||+++ ..+.+|+++.+
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l 542 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVF 542 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999875 5899999999985 57889998753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=329.47 Aligned_cols=207 Identities=20% Similarity=0.307 Sum_probs=166.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. ......+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK--------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE--TGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC--------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEc
Confidence 48899999987420 000135999999999999999999999999999999999998764 59999999864
Q ss_pred c--------hhhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCC
Q 015591 258 V--------QETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPG 327 (404)
Q Consensus 258 ~--------~~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~ 327 (404)
. ...+++.++|++|++. .++..|++||+.|...... .......+.++++++.+++. +..++..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLG---ENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 2 1234667999999863 2345699999998643221 12233345678889999984 5556553
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~ 223 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIV 223 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999998754 899999999997 68889999875
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=321.43 Aligned_cols=207 Identities=21% Similarity=0.303 Sum_probs=164.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceeeEEEECCccC
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT-GSMEGEIKIGGYPK 257 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~-~~~~G~I~i~G~~~ 257 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|+++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 67888888763 35699999999999999999999999999999999998642 23579999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
.. ...++.++|++|++.+++ .|++||+.++...+.... ......+.+.++++.+++.+......... ...||+|
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN-ALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC-cccCCHH
Confidence 32 245677999999877766 699999998653321100 11233456788899999853211111111 3479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +|+|+|++||+++ ++.+.+|+++.
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 213 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQ-QGKRVADYTAF 213 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHhhCcEEEE
Confidence 9999999999999999999999999999999999999999986 4899999999996 67888999875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=332.39 Aligned_cols=213 Identities=19% Similarity=0.225 Sum_probs=169.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGY 255 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~ 255 (404)
.++++||++.|... .+...+|+||||++++||++||+|+||||||||+++|+|+.++. +.+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 37899999987421 11256999999999999999999999999999999999987632 25799999998
Q ss_pred cCch---hhh----cceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 256 PKVQ---ETF----ARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 256 ~~~~---~~~----~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
++.. ..+ ++.++||+|++ .+.|.+|+.+++........ ....++..+.+.++++.++|.+..+..-..
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~- 150 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY- 150 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC-
Confidence 7532 112 24699999986 46788999998876543321 123344567788999999997532211111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++||||||||++|||||+.+|++||+||||+|||+.++.++++.|+++++ .|.|+|+||||++ .+.+.+|+++++
T Consensus 151 -p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm 227 (326)
T PRK11022 151 -PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVM 227 (326)
T ss_pred -chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999986 4999999999997 577899998753
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=297.18 Aligned_cols=205 Identities=28% Similarity=0.387 Sum_probs=172.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.|+.+++++.+.. ..+...+|++|++.|++||.+||||||||||||||-+++|+..+. +|+|.+.|+++
T Consensus 6 ii~~~~l~ktvg~---------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s--sGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQ---------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcC---------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC--CceEEEcCcch
Confidence 3777788776533 234577999999999999999999999999999999999998874 59999999975
Q ss_pred ch------hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQ------ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~------~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
.. .. ..+.+|+|||...+.|++|..||+..+..++... ..+..+.+.+.++.+||.+..+- +| .+
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~H---yP--~q 146 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTH---YP--AQ 146 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCccccccc---Cc--cc
Confidence 32 12 3467999999999999999999999998887532 23445667889999999765443 33 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||+|||+||||++..|++||.||||-+||.++..+|.++|-.+.+ .|.|.+++||||. +...|||.+-
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r 218 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLR 218 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheee
Confidence 999999999999999999999999999999999999999999999875 5999999999985 6888998763
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=317.56 Aligned_cols=200 Identities=27% Similarity=0.388 Sum_probs=168.4
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
.++|+++.| +.+.+++|+||++++||+++|+|+||||||||+++|+|.+++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~-------------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~--~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFY-------------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcCc
Confidence 567777765 2356999999999999999999999999999999999998764 5999999987542
Q ss_pred h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 ~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
. ..++.++|++|++..++.+|++||+.+....+. .......+.++++++.+++.+..++.. ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 1 235679999998888888999999988654331 122233456788999999987777654 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|+++.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~ 203 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAV 203 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 99999999999999999999999999999999999999764 999999999996 68889999875
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=309.60 Aligned_cols=193 Identities=22% Similarity=0.312 Sum_probs=162.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeeEEECCCccc
Confidence 57788888662 356999999999999999999999999999999999998764 599999998753
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ..+++.++|++|+..+++..||+||+.+..... . ....++++++.+++.+..++.+ ..||+|||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 345678999999877778899999999864211 1 1235788999999876666654 36999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
||++||||++.+|++|||||||+|||+.++..+.+.|++++++|.|||++||+++ ..+.+|..
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~ 196 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYE 196 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchh
Confidence 9999999999999999999999999999999999999998777999999999985 35667643
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=325.78 Aligned_cols=206 Identities=23% Similarity=0.358 Sum_probs=167.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc------eeeEEEE
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS------MEGEIKI 252 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~------~~G~I~i 252 (404)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++.. .+|+|.+
T Consensus 2 l~~~nl~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVAR-------------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEE-------------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 5778888866 24579999999999999999999999999999999999887640 1699999
Q ss_pred CCccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 253 GGYPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 253 ~G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
+|.++. ...+++.++|++|++..++.+|++||+.+....+.. ......+..+.++++++.+++.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 998753 233456689999987666779999999886421110 01111233456788999999987666553
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhc
Q 015591 329 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~---------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~f 398 (404)
..||||||||++|||||+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 479999999999999999 599999999999999999999999999998765 899999999987 678899
Q ss_pred ccccc
Q 015591 399 DEVKQ 403 (404)
Q Consensus 399 d~~l~ 403 (404)
|+++.
T Consensus 223 d~i~~ 227 (272)
T PRK13547 223 DRIAM 227 (272)
T ss_pred CEEEE
Confidence 99875
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=315.54 Aligned_cols=199 Identities=24% Similarity=0.371 Sum_probs=163.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++++++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCeEEECCEEc
Confidence 488999998762 356999999999999999999999999999999999987764 69999999864
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSg 333 (404)
. ...+++.++|++|++.+++ .|++||+.+....+.. ....+.++++++.+++. ...++.+ ..||+
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ-----QPDPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC-----ChHHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 3 2235677999999877665 5999999886433211 11234567899999985 3455543 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++ ++ +.+|+++.+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l 210 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITL 210 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEE
Confidence 999999999999999999999999999999999999999999875 4899999999997 45 469998753
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=332.41 Aligned_cols=213 Identities=22% Similarity=0.310 Sum_probs=172.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~ 256 (404)
.++++||++.|... .+...+|+||||+|++||+++|+|+||||||||+++|+|+.++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 48999999887421 12356999999999999999999999999999999999998763 126999999987
Q ss_pred Cch---hh---hc-ceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 257 KVQ---ET---FA-RVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 257 ~~~---~~---~~-~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
+.. .. ++ +.++||+|++ .+.+.+|+.+++.+...... .....+..+++.++++.++|.+..+..-..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-- 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMY-- 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCC--
Confidence 532 22 22 4799999986 57788999999987654332 123344456788899999997543332222
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++||||||||++|||||+.+|++||+||||+|||+.++..|++.|++++++ |.|+|+||||++ .+.+.+|+++++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm 235 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVM 235 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 4679999999999999999999999999999999999999999999999765 999999999997 677889998763
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=308.95 Aligned_cols=179 Identities=56% Similarity=0.902 Sum_probs=153.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. .+++++|+|+||++++||+++|+||||||||||+++|+|+..+.+.+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899999987421 012569999999999999999999999999999999999754223579999999876
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ..+++.++|++|++.+++.+|++||+.+.... + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 4 44567799999988888889999999874210 0 39999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|+|++||+++.++.+.+|+++.
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~ 181 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLL 181 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEE
Confidence 999999999999999999999999999999999999998777999999999997557888999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=314.21 Aligned_cols=209 Identities=22% Similarity=0.279 Sum_probs=165.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC--Cc-
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIG--GY- 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~--G~- 255 (404)
++++|+++.|+.... ...++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEEecCCCc
Confidence 678889887742100 001246999999999999999999999999999999999998764 5999998 42
Q ss_pred -cCc---hhh----hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCC
Q 015591 256 -PKV---QET----FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIP 326 (404)
Q Consensus 256 -~~~---~~~----~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~ 326 (404)
++. ... .++.++|++|++.+++.+|++||+.+...... .......+.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG---VPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 321 111 23568999999888899999999988643221 2222334567888999998753 3444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.+||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++.+
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 3479999999999999999999999999999999999999999999999777999999999965 566789998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=385.70 Aligned_cols=203 Identities=30% Similarity=0.431 Sum_probs=175.4
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceeeEEEECCccCch--hhhcceeEEeecCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT--GSMEGEIKIGGYPKVQ--ETFARVSGYCEQTDIHSP 277 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~--~~~~G~I~i~G~~~~~--~~~~~~~g~v~Q~~~~~~ 277 (404)
.++++|+|||+.+++||+++|+||||||||||||+|+|+... .+.+|+|.+||.+... ..+++.++||+|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 346799999999999999999999999999999999998531 2357999999987532 234567999999999999
Q ss_pred CCCHHHHHHHHhhhhcCc----cCChhhHHHH-HHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 015591 278 QITVEESVIFSAWLRLAP----EINSKTKAEF-VNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 352 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~----~~~~~~~~~~-~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iL 352 (404)
.+||+|++.|++.++.+. ...++++.+. ++++++.++|.+.+|+.+|...+++|||||||||+||++|+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998776432 1223333333 56789999999999999998777899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 353 FMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 353 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||+++++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L 284 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVL 284 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Confidence 999999999999999999999999864 9999999999988999999999863
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=320.23 Aligned_cols=203 Identities=25% Similarity=0.340 Sum_probs=164.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 378899998763 346999999999999999999999999999999999976431 1469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++.. ...++.++|++|++.+++ .|++||+.+....... .......+.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87532 234667999999877666 8999999987533211 112233456778888887742 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|+++.
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~ 217 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAF 217 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEE
Confidence 34799999999999999999999999999999999999999999999986 4899999999986 68888999875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=331.70 Aligned_cols=214 Identities=22% Similarity=0.266 Sum_probs=172.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|...... .. ..+...+|+||||+|++||++||+|+||||||||+++|+|+.++ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~--~~-~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGL--FK-PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCc--cc-cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 48999999988531100 00 01135699999999999999999999999999999999999876 469999999875
Q ss_pred ch------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCC
Q 015591 258 VQ------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGV 328 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~ 328 (404)
.. ..+++.++||+|++ .+.+.+|+.+++........ .....+..+.+.++++.++|.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 23466799999986 57788999999987643321 1233445567899999999963 44554 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++||||||||++|||||+.+|++||+||||++||..++.+|++.|++++++ |.|+|+||||++ .+.+.+|+++++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm 228 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVM 228 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 579999999999999999999999999999999999999999999999764 999999999987 577789998753
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=319.92 Aligned_cols=204 Identities=26% Similarity=0.340 Sum_probs=164.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TG-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999998763 3569999999999999999999999999999999999743 32 1369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
+++.. ..+++.++|++|+..+++ .|++||+.+....+.. .......+.+.++++.+++.+ ..++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGI--KDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87521 234667999999877666 8999999986433211 112223455677888888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|+++++
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFF 220 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEE
Confidence 347999999999999999999999999999999999999999999999864 699999999997 688899998753
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=366.20 Aligned_cols=208 Identities=25% Similarity=0.398 Sum_probs=166.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++.+|+|+|+++++||.+||+|+||||||||+++|+|+++|. +|+|++||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEe
Confidence 36999999998842 2356999999999999999999999999999999999998874 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+++.++||+|++. +++.|++||+.++.......++..+.+...+++.++ .+++..|+.+++.| .+|||
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~-lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~--~lp~gl~t~i~~~g-~~LSg 596 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENV-LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFIS--ELPQGYNTEVGEKG-ANLSG 596 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCe-ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHH--hCcCccCcEecCCC-CCCCH
Confidence 53 3567888999999665 456799999988531110011111112222334444 35566788898875 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|++||||||||+||+.+++.+++.|+++. .++|+|++||+++ ....+|+++++
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l 664 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVL 664 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999985 6899999999996 35679998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=318.09 Aligned_cols=200 Identities=28% Similarity=0.421 Sum_probs=168.2
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+|+||++.+||+++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcCc
Confidence 5677777662 356999999999999999999999999999999999988764 5999999987542
Q ss_pred h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 260 E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 260 ~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
. ..++.++|++|++.+++..|++||+.+....+. .......+.++++++.+++.+..++.. ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 1 235679999998888888999999988654321 122333456788999999977667654 3699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~ 203 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVV 203 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEE
Confidence 99999999999999999999999999999999999998765 899999999996 67889999875
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=351.94 Aligned_cols=205 Identities=27% Similarity=0.378 Sum_probs=172.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD--AGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECC
Confidence 78899998762 356999999999999999999999999999999999998764 599999998753
Q ss_pred h----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 259 Q----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...++.++|++|++.+++.+||+||+.++...+.. ......+..+.++++++.+++.+..++.++ +|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCH
Confidence 2 11345799999998888999999999986432210 111223334567899999999887777654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.+
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l 214 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF 214 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 688899998753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=314.30 Aligned_cols=186 Identities=24% Similarity=0.370 Sum_probs=156.9
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcceeEEeecCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFARVSGYCEQTDI 274 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~g~v~Q~~~ 274 (404)
+++.+ |+||++++ |+++|+||||||||||+++|+|+.+|. +|+|.++|.+... ...++.++|++|++.
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 85 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD--GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEecccccchhhhhhHhhcEEEEecCCc
Confidence 34445 99999999 999999999999999999999998764 6999999986431 124567999999988
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlL 354 (404)
+++.+|++||+.+..... ......+.++++++.+++.+..++.. ..||||||||++|||||+.+|++|||
T Consensus 86 ~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 86 LFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred cCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888899999998864321 12233456788999999977666653 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++...+|+++.
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 204 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVV 204 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEE
Confidence 9999999999999999999999765 899999999997 57788999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=326.20 Aligned_cols=206 Identities=24% Similarity=0.315 Sum_probs=170.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-MEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~-~~G~I~i~G~~ 256 (404)
.++++|+++.|+. ..+++|+|+||++++||+++|+||||||||||+++|+|+.++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4889999997631 12459999999999999999999999999999999999887642 13899999987
Q ss_pred Cch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 257 KVQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
+.. ...++.+||++|++. .++..||+||+.|..... ....++..+.++++++.++|.+..++.. ..||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 642 234567999999863 567889999998864322 1233444567888999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..+|+++++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l 216 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVL 216 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEE
Confidence 99999999999999999999999999999999999999999999764 9999999999973 4 579998753
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=325.50 Aligned_cols=208 Identities=23% Similarity=0.290 Sum_probs=169.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+... ....+.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS--EGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEec
Confidence 488999999874210 001246999999999999999999999999999999999998764 59999999875
Q ss_pred ch----hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
.. ...++.+||++|++. .+...|+.||+.|+..... ....+..+.++++++.+++.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLG---IPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcC---CCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 32 234678999999863 3445799999998754321 223344567889999999988777764 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.. +|+++++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l 217 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVM 217 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEE
Confidence 9999999999999999999999999999999999999999999976 4999999999998 4544 9998753
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=318.92 Aligned_cols=204 Identities=24% Similarity=0.297 Sum_probs=165.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478899988762 356999999999999999999999999999999999986542 2469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++.. ...++.++|++|++.+++ +|++||+.|....... ....+..+.++++++.+++.+ ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87532 234667999999887766 8999999986533211 112233456778889888743 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|+++++
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l 219 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFF 219 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEE
Confidence 347999999999999999999999999999999999999999999999875 699999999986 688899998753
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=322.19 Aligned_cols=203 Identities=26% Similarity=0.320 Sum_probs=168.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK--SGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 4899999997731 1235899999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++. +++..|+++|+.+...... .......+.++++++.+++.+..++.. ..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 32 345677999999864 6777899999988653221 122333456788999999987766653 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.. +|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~ 214 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIV 214 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999997 4554 999875
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=318.49 Aligned_cols=208 Identities=25% Similarity=0.295 Sum_probs=165.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 478889988763 356999999999999999999999999999999999987653 2469999999
Q ss_pred ccCc----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 255 YPKV----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 255 ~~~~----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
.++. ....++.++|++|++.+++ .|++||+.+....... .......+.+.+.++.+++.+........+ ..+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGI--KDKKVLDEVVERSLRGAALWDEVKDRLKSH-AFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCC--CchHHHHHHHHHHHHHcCCchhhhHHhhcC-ccc
Confidence 8752 1245677999999887776 8999999886432210 112233455677788877753211111111 347
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l 217 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFF 217 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 699999999996 688899998753
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=318.68 Aligned_cols=206 Identities=25% Similarity=0.330 Sum_probs=164.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 255 (404)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 78899998762 356999999999999999999999999999999999986531 24699999998
Q ss_pred cCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 256 PKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 256 ~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
++.. ...++.++|++|++.+++ .|++||+.+....... .......+.+++.++.+++.+..+..... ...+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSELNK-PGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHHhC-Chhh
Confidence 7532 234567999999887766 8999999986533211 11222344567888888875321111111 1347
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~ 217 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAF 217 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999864 799999999987 67888999875
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=317.65 Aligned_cols=186 Identities=23% Similarity=0.335 Sum_probs=156.2
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVI 286 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~ 286 (404)
|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.... ...+|++|++.+++.+|++||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT--SGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 57999999999999999999999999999999998764 699999998754221 12489999988888899999998
Q ss_pred HHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 015591 287 FSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366 (404)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~ 366 (404)
+...... ......+..+.+.++++.+++.+..++.+ .+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 8632111 11222334456788999999987666654 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 367 AIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 367 ~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~ 187 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVM 187 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 9999999998764 899999999997 68889999875
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=316.70 Aligned_cols=199 Identities=22% Similarity=0.305 Sum_probs=165.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+ ++ ..|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCeecC
Confidence 67888988773 12 23899999999999999999999999999999998764 599999998753
Q ss_pred hh-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 QE-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
.. ..++.++|++|++.+++.+|+.||+.+...... . ..+...+.+.++++.+++.+..++.. ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--K-LNAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--C-CCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 21 234679999999888888999999987532110 1 11233456888999999987777764 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++||||++.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 202 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLV 202 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999998754 899999999997 67888999875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=307.53 Aligned_cols=180 Identities=47% Similarity=0.822 Sum_probs=154.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECCc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK--TTGSMEGEIKIGGY 255 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~--~~~~~~G~I~i~G~ 255 (404)
.++++||++.|+..- +...+++|+|+||++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCE
Confidence 488999999874200 001256999999999999999999999999999999999987 65 4699999998
Q ss_pred cCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 256 PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
+......++.++|++|++.+++.+|++||+.+.... . .||+||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------~----------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------R----------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---------------c----------------------cCCHHH
Confidence 865445567899999988888889999999764210 0 399999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++|+|+|++||+++.++.+.+|+++.
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~ 184 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLL 184 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEE
Confidence 99999999999999999999999999999999999999998767999999999998678889999875
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=315.12 Aligned_cols=189 Identities=26% Similarity=0.338 Sum_probs=155.1
Q ss_pred cccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCC
Q 015591 195 RERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDI 274 (404)
Q Consensus 195 ~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~ 274 (404)
+++++.++++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|++... . .+...
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~--~-------~~~~~ 94 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD--SGTVTVRGRVSSL--L-------GLGGG 94 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEchh--h-------ccccc
Confidence 44445556788999999999999999999999999999999999988764 6999999976421 1 11123
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlL 354 (404)
+.+.+||+||+.+....+. .......+.+.++++.+++.+..++.+ .+||+|||||++|||+|+.+|++|||
T Consensus 95 ~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llll 166 (224)
T cd03220 95 FNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLI 166 (224)
T ss_pred CCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4567899999988754321 122333456788899999987777765 37999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 167 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 214 (224)
T cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALV 214 (224)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999998777899999999986 67788998865
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=330.97 Aligned_cols=214 Identities=16% Similarity=0.233 Sum_probs=167.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceeeEEEECCcc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT--GSMEGEIKIGGYP 256 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~--~~~~G~I~i~G~~ 256 (404)
++++||++.|+.. .+...+|+||||+|++||+++|+|+||||||||+++|+|+.++ .+.+|+|.++|++
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 7889999987421 1235699999999999999999999999999999999998753 1357999999987
Q ss_pred Cch---hhh----cceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCcc---CChhhHHHHHHHHHHHcCCCCCcccccc
Q 015591 257 KVQ---ETF----ARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPE---INSKTKAEFVNEVLETIELDGIKDSLVG 324 (404)
Q Consensus 257 ~~~---~~~----~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~vg 324 (404)
+.. ... ++.++||+|++. +.+.+||.+++.+......... ....+..+.+.++++.++|.+..+..-.
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 532 111 346999999865 5678999999976432111000 0112334678899999999753221111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 325 ~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
. +++||||||||++|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|||+||||++ .+.+.+|++++
T Consensus 155 ~--p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 155 F--PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred C--chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 1 3579999999999999999999999999999999999999999999999864 999999999997 67789999875
Q ss_pred C
Q 015591 404 F 404 (404)
Q Consensus 404 ~ 404 (404)
+
T Consensus 232 m 232 (330)
T PRK15093 232 L 232 (330)
T ss_pred E
Confidence 3
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=334.98 Aligned_cols=178 Identities=23% Similarity=0.365 Sum_probs=156.3
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcceeEEeecCCCCCCCCCH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.. ...++.++|++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 899999999999999999999999999999998764 6999999987531 2346789999999889999999
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
+||+.|+.. ....+.++++++.+++.+..++.. .+||||||||++|||||+.+|++|||||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999998632 112356788999999987777664 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 362 DARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.++..+.+.|++++++ |+|+|++||+++ ++...+|++++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~ 201 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVV 201 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEE
Confidence 999999999999999765 899999999996 78899999875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=322.75 Aligned_cols=212 Identities=19% Similarity=0.264 Sum_probs=169.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|...-+ ....+.+++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--CCEEEECCEECC
Confidence 889999998742100 00001246999999999999999999999999999999999998764 599999998753
Q ss_pred h---hhhcceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCC
Q 015591 259 Q---ETFARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LS 332 (404)
. ...++.++|++|++. +.+..|+.+++.+...... ........+.++++++.+++. +..+..+ ..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhcC
Confidence 2 223456999999764 4677899999988654321 112233345678899999994 5555543 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||+++++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l 223 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVM 223 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999997 678889998753
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=319.71 Aligned_cols=203 Identities=24% Similarity=0.323 Sum_probs=165.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--C-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT--G-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 489999999763 35699999999999999999999999999999999998652 2 1369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC----ccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI----KDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~vg~ 325 (404)
+++.. ...++.++|++|++.+++. |++||+.+....... ....+..+.++++++.+++.+. .++.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87531 2345679999998777764 999999886433211 1122334567788888887532 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|++||+++ ++.+.+|+++.
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 226 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAF 226 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 799999999997 68889999875
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=320.30 Aligned_cols=203 Identities=23% Similarity=0.321 Sum_probs=165.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-c--eeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-S--MEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~--~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 488999998773 356999999999999999999999999999999999987643 1 379999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
+++.. ..+++.++|++|++.+++ .|++||+.++...+. ........+.+.++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87531 234567999999887776 899999988654331 1122233456778888888742 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~ 221 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAF 221 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEE
Confidence 347999999999999999999999999999999999999999999999864 699999999997 78899999875
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=317.60 Aligned_cols=204 Identities=25% Similarity=0.312 Sum_probs=164.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~---~~G~I~i~G 254 (404)
.+.++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 478889988762 3569999999999999999999999999999999999876532 369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC----CCccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----GIKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~vg~ 325 (404)
.++.. ..+++.++|++|++.+++.+|+.||+.+....... ...+...+.+++.++.+++. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87531 23466799999998888889999999876432211 11222334566667766653 223433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|+++.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 219 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMH-QAARVSDTTSF 219 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 34799999999999999999999999999999999999999999999986 4799999999997 67888999875
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=336.20 Aligned_cols=182 Identities=25% Similarity=0.371 Sum_probs=158.0
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcceeEEeecCCCCCCCCCH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 999999999999999999999999999999998764 5999999987531 1345679999999888899999
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
+||+.|+.... ...+..+.++++++.++|.+..++.. .+||||||||++|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 12233456889999999988777764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 362 DARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~ 204 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVV 204 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 999999999999999765 899999999997 68889999875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=318.14 Aligned_cols=207 Identities=23% Similarity=0.333 Sum_probs=163.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TG-SMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G~ 255 (404)
-+++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+.+ +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 46778887662 3569999999999999999999999999999999999865 21 24799999998
Q ss_pred cCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 256 PKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 256 ~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
++.. ...++.++|++|++.+++. |++||+.+....+.. ........+.+.++++.+++.+........+ +.+
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKDS-AFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhcC-hhh
Confidence 6532 1346779999998777765 999999886433211 1112233456778899999864211111111 347
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.+|+++.
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~ 220 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAF 220 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEE
Confidence 99999999999999999999999999999999999999999999986 5899999999997 67888999875
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=308.02 Aligned_cols=200 Identities=27% Similarity=0.380 Sum_probs=165.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||+-.| ++.++|++|||++++||+++|+|+|||||||||++|+|+.++. +|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~--~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR--SGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEECCeecC
Confidence 6677777655 5678999999999999999999999999999999999988764 699999999864
Q ss_pred h----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-CCCCccccccCCCCCCCCH
Q 015591 259 Q----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-LDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~vg~~~~~~LSg 333 (404)
. +..++.++||||....|+.+||+|||..++..+... .......+++.+.+- |.+..+..-| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~----~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc----ccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 3 445778999999999999999999999987544321 111222566776653 4444455433 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||.++|||||+.+|++|+|||||.||-|.-.++|.+.|++++++ |.||+++.++.. ...++.|+..+
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yv 209 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYV 209 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEE
Confidence 9999999999999999999999999999999999999999999965 889999999886 57788888654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=350.44 Aligned_cols=205 Identities=24% Similarity=0.295 Sum_probs=171.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC--ccEEEECCEEC
Confidence 388899998762 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch---h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhh----cCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 258 VQ---E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLR----LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 258 ~~---~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.. . ..++.++|++|++.+++.+||+||+.++.... ........+..+.++++++.+++.+..++.++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA----- 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----
Confidence 32 1 12456999999988888999999998754211 00001122334668899999999877777653
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~ 217 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTV 217 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 79999999999999999999999999999999999999999999999877999999999986 67788999875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=315.02 Aligned_cols=187 Identities=26% Similarity=0.387 Sum_probs=159.9
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~--~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD--SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 899999999999999999999999999999999988764 5999999987542 1235679999999888888999999
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
+.+...... ....+..+.+.++++.+++.+..++.+ ..||+|||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 988643321 122334456778899999987777664 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 365 AAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+++.+.+.|++++++ |+|+|++||++. ++.+.+|+++.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~ 202 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAI 202 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 999999999998764 999999999996 67888999875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=317.08 Aligned_cols=208 Identities=23% Similarity=0.276 Sum_probs=164.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~---~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+.++.. .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 378899998762 3569999999999999999999999999999999999877631 259999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++.. ...++.++|++|++.+++ .|++||+.+....+... ......+.++++++.+++.+........+ +.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLHKS-GL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCc-CcHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhhCC-cc
Confidence 87531 244678999999887776 49999999875432111 11122345667777777653211111111 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|+++++
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l 219 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFL 219 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEE
Confidence 799999999999999999999999999999999999999999999985 6899999999997 677889998753
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=348.33 Aligned_cols=207 Identities=21% Similarity=0.334 Sum_probs=169.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.| +++++|+||||++++||+++|+||||||||||+++|+|+.++++.+|+|.++|+++.
T Consensus 2 l~i~~l~~~~-------------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTF-------------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEe-------------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5778888866 235699999999999999999999999999999999998775334699999998753
Q ss_pred h----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCc-cccccCCCCCCCC
Q 015591 259 Q----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIK-DSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~vg~~~~~~LS 332 (404)
. ...++.++||+|++.+++.+||+||+.++....... ........+.++++++.+++.+.. ++.+ .+||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 2 113456999999988888999999998864322100 012223345688999999997654 3443 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.+
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l 214 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVI 214 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999987 678889998753
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=301.51 Aligned_cols=165 Identities=28% Similarity=0.441 Sum_probs=145.6
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD--SGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEccc
Confidence 5677777652 346999999999999999999999999999999999988764 6999999987532
Q ss_pred --hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 260 --ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 260 --~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
...++.++|++|++.+++..|++||+. ||+||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 244677999999988888889999873 8999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|++|||||+.+|++|+|||||++||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|+++.+
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l 168 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAIL 168 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999877899999999987 677889998753
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=340.65 Aligned_cols=199 Identities=23% Similarity=0.357 Sum_probs=168.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|+|+. ...++|+|+||++++||.+||+|+||||||||+++|+|.+++. +|+|.++|.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~--~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ--QGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC--CCeeeECCcCh
Confidence 6999999998853 3457999999999999999999999999999999999988875 59999999874
Q ss_pred ---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCCC
Q 015591 258 ---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIPG 327 (404)
Q Consensus 258 ---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~~ 327 (404)
++..+++.++++.| ..|++..|+|+|+.++.... .++.+.++++.+||. +..++.+|+.|
T Consensus 403 ~~l~~~~~~e~i~vl~Q-r~hlF~~Tlr~NL~lA~~~A---------sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 403 ASLDEQALRETISVLTQ-RVHLFSGTLRDNLRLANPDA---------SDEELWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred hhCChhhHHHHHhhhcc-chHHHHHHHHHHHhhcCCCC---------CHHHHHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 33457788999999 66778889999999864322 123445556666554 45677888876
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||+|++|.++++|||||.|||+.++++|++.|.+.+ +|+|+|++||+.. -.+.||+|++
T Consensus 473 -~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~--~le~~drIiv 544 (573)
T COG4987 473 -RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLR--GLERMDRIIV 544 (573)
T ss_pred -CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccc--cHhhcCEEEE
Confidence 4699999999999999999999999999999999999999999999876 5999999999986 4889999876
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=322.55 Aligned_cols=205 Identities=24% Similarity=0.297 Sum_probs=169.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. .....+|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF--EGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCEEEECCEEC
Confidence 4889999998741 01235999999999999999999999999999999999998764 59999999875
Q ss_pred ch---hhhcceeEEeecCCC-CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ETFARVSGYCEQTDI-HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~-~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.++|++|++. .++..||.||+.++..... ....+..+.++++++.+++.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG---IPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 32 245678999999863 5778899999988653221 223333456789999999987766653 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++. +. .+|+++++
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l 213 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVM 213 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999974 44 69998753
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=319.71 Aligned_cols=209 Identities=24% Similarity=0.331 Sum_probs=166.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIG 253 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~ 253 (404)
..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3589999999773 356999999999999999999999999999999999986631 257999999
Q ss_pred CccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 254 GYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 254 G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
|.++.. ..+++.++|++|+..+++. |++||+.+....... .......+.++++++.+++.+........+ +
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHEN-A 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhCC-c
Confidence 987531 2356789999998777765 999999886533211 112223355778888888753211111111 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|+++++
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 240 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFM 240 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999975 799999999986 678899998753
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=347.80 Aligned_cols=205 Identities=28% Similarity=0.375 Sum_probs=171.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEEC
Confidence 378899998763 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ..+++.++|++|++.+++.+||+||+.++............+..+.++++++.+++.+..++.+ .+|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 31 2345679999999888889999999998642111011122333456889999999987666654 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++.
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~ 212 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITV 212 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 67888999875
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=316.74 Aligned_cols=207 Identities=27% Similarity=0.320 Sum_probs=164.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~---~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+..+.+ .+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 488999998763 3569999999999999999999999999999999999754321 369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
+++.. ...++.++|++|++.+++ .||+||+.+....+.. .......+.+.++++.+++.+........+ ..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS-AL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC-hh
Confidence 87532 234567999999887776 5999999987543321 112233456778888887743211111111 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~ 220 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGF 220 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEE
Confidence 7999999999999999999999999999999999999999999999875 699999999987 57788999875
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=309.01 Aligned_cols=201 Identities=23% Similarity=0.382 Sum_probs=181.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
+++++|+++ ++++.+++|+||+++||++.+++|||||||||.+++|.|+..++ +|+|.++|.++.
T Consensus 3 L~ie~vtK~-------------Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~--~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKS-------------FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT--EGEITWNGGPLS 67 (300)
T ss_pred eEEecchhc-------------cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc--CceEEEcCcchh
Confidence 566666654 46788999999999999999999999999999999999998874 599999999876
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
. ..+.+|||.|.+..+++.+||.|.|.|.+.+.. ++.++..+.++.+++++++.+...+.+ .+||.|++|+
T Consensus 68 ~-~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQK 138 (300)
T COG4152 68 Q-EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQK 138 (300)
T ss_pred h-hhhhhcccChhhhccCccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHH
Confidence 3 445679999999999999999999999998875 455677788999999999998887775 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.+-.+++++|+++|||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||+++.+
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL 203 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLML 203 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhhee
Confidence 99999999999999999999999999999999999999999999999999997 799999999753
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=317.68 Aligned_cols=209 Identities=22% Similarity=0.291 Sum_probs=167.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999999763 346999999999999999999999999999999999987753 1369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
+++.. ...++.++|++|+..+++ .|++||+.+....... ....+..+.+.++++.+++.+..+.....+ +.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHKS-AL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcCC-cc
Confidence 87521 234667999999877766 8999999886432210 112233456788888888754222222222 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|+++++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l 224 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFF 224 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 7999999999999999999999999999999999999999999999865 4899999999996 688999998753
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=319.84 Aligned_cols=208 Identities=23% Similarity=0.293 Sum_probs=167.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.+.++||++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 589999999873 357999999999999999999999999999999999987652 3479999999
Q ss_pred ccCch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 255 YPKVQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 255 ~~~~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
.++.. ...++.++|++|++.+++ .|++||+.+...... .....+..+.+.++++.+++.+..+..... .+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSD-SPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhC-Cccc
Confidence 87532 234677999999877776 899999988643221 112223334567788888886432221111 1357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.+|+++++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l 235 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALF 235 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 589999999997 688899998753
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=316.04 Aligned_cols=203 Identities=22% Similarity=0.286 Sum_probs=163.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--C-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT--G-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G 254 (404)
.++++|+++.|. .+++|+|+||++++||+++|+|+||||||||+++|+|+.++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 378999998763 35699999999999999999999999999999999998752 1 2479999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
+++.. ...++.++|++|++.+++ .|++||+.+....... .......+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87531 234667999999877665 7999999886432211 111222355778888888842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.+|+++.
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~ 218 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQTAF 218 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCEEEE
Confidence 34799999999999999999999999999999999999999999999986 4799999999997 67888999865
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=320.82 Aligned_cols=206 Identities=24% Similarity=0.380 Sum_probs=165.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEh
Confidence 588999998773 1356999999999999999999999999999999999998764 69999999876
Q ss_pred chhhhcceeEEeecCCCCC--CCCCHHHHHHHHhhhhc-CccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 VQETFARVSGYCEQTDIHS--PQITVEESVIFSAWLRL-APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~--~~~Tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
.....++.++|++|++.+. ...++++++.++..... ..........+.++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999986542 34578998876421100 000111223455778899999987777764 369999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++.
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~ 214 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVM 214 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999877999999999986 67889998753
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=317.11 Aligned_cols=203 Identities=25% Similarity=0.306 Sum_probs=164.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc-
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP- 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~- 256 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCccc
Confidence 488999998763 346999999999999999999999999999999999998764 5999999986
Q ss_pred ----Cch---hh----hcceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-Ccccc
Q 015591 257 ----KVQ---ET----FARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSL 322 (404)
Q Consensus 257 ----~~~---~~----~~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 322 (404)
+.. .. .++.++|++|+.. +.+.+|+.||+.+....... ....+..+.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA--RHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 431 11 2456999999863 56778999999764322111 111233456788999999863 44544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
. ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 479999999999999999999999999999999999999999999998764 899999999997 577789998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 223 ~~ 224 (258)
T PRK11701 223 LV 224 (258)
T ss_pred EE
Confidence 75
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=353.90 Aligned_cols=200 Identities=23% Similarity=0.346 Sum_probs=164.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+. +++.+|+|+|+++++|+.++|+||||||||||+++|+|+++|. +|+|.+||.++
T Consensus 313 ~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~--~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS--EGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCEEEECCEEH
Confidence 5899999998742 2346999999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~~ 327 (404)
. ...+++.++||+|++.++ ..|++||+.++.. +.+. +.++++++.. .+++..|+.+|+.|
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g 449 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLF-SDTVANNIALGRP-----DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERG 449 (569)
T ss_pred hhCCHHHHHhheEEEccCCeec-cccHHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCC
Confidence 3 346678899999977655 5699999988531 1111 1223333333 34566788888765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
. .||||||||++|||||+++|++||||||||+||+++++.+++.|+++. +|+|+|++||+++ ..+.+|+++.+
T Consensus 450 ~-~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l 522 (569)
T PRK10789 450 V-MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVM 522 (569)
T ss_pred C-cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEE
Confidence 4 699999999999999999999999999999999999999999999875 6899999999986 46779998753
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=317.99 Aligned_cols=203 Identities=22% Similarity=0.381 Sum_probs=153.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|.. +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCeehH
Confidence 357788876631 1346999999999999999999999999999999999998764 699999998643
Q ss_pred ---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCCCH
Q 015591 259 ---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 259 ---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~LSg 333 (404)
...+++.++|++|++.++ ..||+||+.+..................+.++++.+ ++....+.. +.+|||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~LSg 141 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLF-NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSG 141 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhc-cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCcCCH
Confidence 234567799999987655 579999998753210000000000111123344433 333333332 357999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.+|+++.
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~ 208 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIV 208 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEE
Confidence 99999999999999999999999999999999999999999986 4899999999997 45 56999875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=315.94 Aligned_cols=201 Identities=21% Similarity=0.273 Sum_probs=163.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGY 255 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~ 255 (404)
.++++|+++.| ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 58899999865 135999999999999999999999999999999999987761 14699999998
Q ss_pred cCchhhh-cceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC---CccccccCCCCC
Q 015591 256 PKVQETF-ARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG---IKDSLVGIPGVN 329 (404)
Q Consensus 256 ~~~~~~~-~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~vg~~~~~ 329 (404)
++..... ++.++|++|++. +.+..|+.+++.+.+.... .. ...+.+.++++.+++.+ ..++. +.
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KP--ADDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CC--hHHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 7643222 357999999864 4456799999876532221 11 12356788999999875 23443 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~ 213 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAV 213 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEE
Confidence 79999999999999999999999999999999999999999999998764 899999999997 57788999865
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=326.12 Aligned_cols=210 Identities=25% Similarity=0.322 Sum_probs=169.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEEC
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT---GSMEGEIKIG 253 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~ 253 (404)
..++++|+++.|.. +.+.+|+|+||+|++||++||+|+||||||||+++|+|+..+ .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 35999999998742 234699999999999999999999999999999999998653 1346999999
Q ss_pred CccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCC-hhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 254 GYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN-SKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 254 G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
|.++.. ..+++.++||+|++.++ ..|++||+.|+.... ... .....+.+.++++.+++.+..++.++..+
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAG 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCc
Confidence 998642 24567899999987765 589999999864321 111 12223446778888887544444555543
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||+++ .+.+.+|+++++
T Consensus 224 -~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl 297 (329)
T PRK14257 224 -NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFF 297 (329)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999875 799999999997 577889999864
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=319.59 Aligned_cols=200 Identities=26% Similarity=0.338 Sum_probs=163.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT---GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 254 (404)
.++++|+++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 589999999773 35699999999999999999999999999999999998753 13469999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++. ....++.++|++|+..+++. |++||+.+....+. ... ...+.++++++.+++.+ ..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 8752 12356789999998776664 99999998654322 111 23456788898888753 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|+++
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~ 250 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTA 250 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEE
Confidence 347999999999999999999999999999999999999999999999975 489999999987 6778899853
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=301.80 Aligned_cols=166 Identities=28% Similarity=0.413 Sum_probs=146.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5677777652 35699999999999999999999999999999999998876 46999999987532
Q ss_pred -----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 260 -----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 260 -----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
...++.++|++|++.+++..|++||+.+. ||+|
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 34567899999988888889999987642 8999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ ++.+.+|+++.
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 173 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVV 173 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 999999999999999999999999999999999999999999876 899999999986 67778999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=352.66 Aligned_cols=200 Identities=24% Similarity=0.348 Sum_probs=164.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+.. .++.+|+|+||+++|||.++|+|+||||||||+++|+|+++|. +|+|.+||.++
T Consensus 337 ~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~--~G~I~i~g~~i 404 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ--SGRILLDGVDL 404 (576)
T ss_pred eEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCEEH
Confidence 59999999988521 1256999999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~~ 327 (404)
. ...+++.++|++|++. +++.|++||+.++.. +.+ .+.+.++++..+ +++..|+.+|+.|
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~-lf~~Ti~~Ni~~~~~-----~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g 474 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPV-LFAASVMENIRYGRP-----DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGERG 474 (576)
T ss_pred HhcCHHHHHHhceEEccCCc-cccccHHHHHhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCC
Confidence 3 3567788999999665 567799999988531 111 122334444443 3445678888765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++||||++++|++|+||||||+||+.+++.+++.|+++. +++|+|++||+++ ....+|+++.
T Consensus 475 -~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~ 546 (576)
T TIGR02204 475 -VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVV 546 (576)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999985 5899999999985 5678999875
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=381.27 Aligned_cols=202 Identities=33% Similarity=0.519 Sum_probs=175.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
++++|+|||+.++|||+++|+||||||||||||+|+|+.++. ..+|+|.+||++......++.++||+|+|.|++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 467999999999999999999999999999999999987653 3479999999886543446789999999999999999
Q ss_pred HHHHHHHhhhhcCc-------cCChhhH------------------------HHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 282 EESVIFSAWLRLAP-------EINSKTK------------------------AEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 282 ~e~l~~~~~~~~~~-------~~~~~~~------------------------~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
+|++.|++.++... +....++ ...++++++.+||.+++|+.+|....++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999998765321 1111111 1235789999999999999999877789
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+++++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEe
Confidence 999999999999999999999999999999999999999999999976 58999999999998999999999864
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=317.99 Aligned_cols=203 Identities=25% Similarity=0.320 Sum_probs=162.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--T-GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.. + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 489999999773 3569999999999999999999999999999999999753 1 13569999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++.. ...++.++|++|++.+++ .|++||+.+...... ........+.+.+.++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87532 234667999999887776 499999988643221 1111222345677788887742 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++.
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~ 235 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAF 235 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 689999999986 68889999875
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=346.60 Aligned_cols=198 Identities=22% Similarity=0.354 Sum_probs=170.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEC
Confidence 488999999773 356999999999999999999999999999999999998764 59999999875
Q ss_pred ch---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. .. .++.++|++|++.+++.+||+||+.+.... .....+.++++++.+++.+..++.+ .+|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 32 11 234689999998888999999999885321 1223456788999999987777765 37999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~ 212 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISV 212 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999877999999999997 67889999875
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=313.32 Aligned_cols=203 Identities=24% Similarity=0.317 Sum_probs=162.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TG-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 488999998763 3569999999999999999999999999999999999754 21 1369999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~ 325 (404)
.++.. ...++.++|++|++.+++ .|++||+.+....+... ......+.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 234567999999877776 79999999865432211 11112344566777777642 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|+++.
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~ 219 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAF 219 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999875 589999999997 68889999875
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=371.45 Aligned_cols=204 Identities=24% Similarity=0.350 Sum_probs=176.6
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||++.|+. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt--sG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT--SGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC--ceEEEECCEE
Confidence 46899999997731 2357999999999999999999999999999999999998764 6999999987
Q ss_pred Cch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 257 KVQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
+.. ...++.+|||+|++.+++.+||+||+.|.+.++. ....+.++.++++++.++|.+..++.+ ++||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 642 2356789999999999999999999999876543 222334567889999999998888775 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++ +|+|||++||+++ ++..++|+++.
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~i 1132 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAI 1132 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999985 6999999999997 67888999865
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=351.95 Aligned_cols=200 Identities=26% Similarity=0.332 Sum_probs=162.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+. ++++|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+|.+||.+.
T Consensus 334 ~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT--VGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC--CCEEEECCEEh
Confidence 5999999998742 245899999999999999999999999999999999998874 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHH-----HHHHHHHHcCCCCCccccccCCCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAE-----FVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
. ...+++.++||+|++.++ ..|++||+.++.. ..+.++..+ .+++.+. .+++..|+.+|+.+ .
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~~-~ 470 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLF-NRSIRENIRLGRE-----GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGERG-N 470 (585)
T ss_pred hhCCHHHHHhheEEEccCCccC-cccHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCCC-C
Confidence 3 345778899999977655 5799999988632 111111111 1222222 34556678888765 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~ 541 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLF 541 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEE
Confidence 699999999999999999999999999999999999999999999875 5899999999996 3467999875
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=317.92 Aligned_cols=204 Identities=21% Similarity=0.251 Sum_probs=163.6
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEE
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKI 252 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i 252 (404)
+..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+..+. +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34689999999763 356999999999999999999999999999999999986532 24699999
Q ss_pred CCccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----Cccccc
Q 015591 253 GGYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLV 323 (404)
Q Consensus 253 ~G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~v 323 (404)
+|+++.. ..+++.++|++|+..+++ .|+.||+.+....+. .. ....+.+++.++.+++.. ..++.
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK- 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC-
Confidence 9987531 234678999999877665 499999988643321 11 112244566777777632 22332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 159 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 232 (274)
T PRK14265 159 ----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAF 232 (274)
T ss_pred ----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999874 799999999997 68889999875
Q ss_pred C
Q 015591 404 F 404 (404)
Q Consensus 404 ~ 404 (404)
+
T Consensus 233 l 233 (274)
T PRK14265 233 F 233 (274)
T ss_pred E
Confidence 3
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=315.53 Aligned_cols=207 Identities=21% Similarity=0.254 Sum_probs=166.4
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEEC
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIG 253 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~ 253 (404)
..+.+++++++| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+|. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 347778887765 3467999999999999999999999999999999999987651 247999999
Q ss_pred CccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 254 GYPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 254 G~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
|+++.. ..+++.++|++|++.++ .+|++||+.++...+. . .....+.++++++.+++.+..+...+. ..
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 987531 23466799999987765 6999999998754321 1 122345678889988885432222222 23
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|+|++||+++ ++.+.+|+++++
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l 221 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFF 221 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 5799999999999999999999999999999999999999999999986 4799999999997 688899998753
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=320.33 Aligned_cols=203 Identities=23% Similarity=0.313 Sum_probs=163.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CC-ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--TG-SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 254 (404)
.+.++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ +. +.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999998763 3469999999999999999999999999999999999753 21 2469999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC----CCccccccC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----GIKDSLVGI 325 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~vg~ 325 (404)
.++.. ...++.++|++|++.+++ .|++||+.+....+... ......+.+.++++.+++. +..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFDNIAYGPRLHGIN--DKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCc-cCHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87531 134667999999887776 49999999875332111 1122345567788888764 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++.
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~ 253 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMF 253 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 689999999997 67888999875
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=316.76 Aligned_cols=205 Identities=21% Similarity=0.261 Sum_probs=162.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++||++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+..+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 488999998763 356999999999999999999999999999999999986421 2469999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++. ....++.++|++|++.+++ .|++||+.+....+. .. ....+.++++++.+++.+..+.....+ +.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQS-GL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCC-cc
Confidence 8652 1234667999999877666 599999988653321 11 122345566777777642111111111 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++.
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~ 222 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAF 222 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 7999999999999999999999999999999999999999999999975 589999999987 78999999875
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=314.97 Aligned_cols=203 Identities=24% Similarity=0.342 Sum_probs=154.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV- 258 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~- 258 (404)
+++|+++.|+. .++.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD--SGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC--CCEEEECCEEhhh
Confidence 56778876631 1236999999999999999999999999999999999998764 699999997643
Q ss_pred --hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCCCHH
Q 015591 259 --QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 --~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~LSgG 334 (404)
....++.++|++|+..+++ .|++||+.+..................+++.++.+ ++....+.. +..||+|
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G 142 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGG 142 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHH
Confidence 2344667999999877665 79999998754211000000000111234555544 444333333 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||+++ ++. .+|+++++
T Consensus 143 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~v~~l 209 (234)
T cd03251 143 QRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TIE-NADRIVVL 209 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEe
Confidence 9999999999999999999999999999999999999999986 4899999999997 454 49998753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=344.81 Aligned_cols=194 Identities=24% Similarity=0.324 Sum_probs=162.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCCCCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTDIHSPQ 278 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~~~~~~ 278 (404)
++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++.. ...++.++|++|+..+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 467999999999999999999999999999999999988764 6999999987532 2235679999998888889
Q ss_pred CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
+||+||+.++............+..+.++++++.+++.+..++.+ .+||||||||++|||||+.+|++|||||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999987642110100122233456889999999987777664 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 359 TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 359 sgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||+.++..+.+.|++++++|+|||++||+++ ++...||+++++
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l 207 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITIL 207 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 999999999999999999877999999999996 678899998753
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=311.85 Aligned_cols=189 Identities=27% Similarity=0.337 Sum_probs=155.6
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCccCchhhh-cceeEEeecCCC--CCCCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGYPKVQETF-ARVSGYCEQTDI--HSPQIT 280 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~~~~~~~~-~~~~g~v~Q~~~--~~~~~T 280 (404)
+|+|+||++++||+++|+||||||||||+++|+|+.++. +.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999987751 136999999987643223 357999999864 456789
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC---CccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG---IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP 357 (404)
+.||+.+....... ......+.+.++++.+++.+ ..++.+ ..||+|||||++|||||+.+|++||||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999876432211 11233456889999999973 344443 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 358 TTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 358 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~ 198 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAV 198 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999764 899999999997 68889999875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=311.76 Aligned_cols=206 Identities=23% Similarity=0.358 Sum_probs=160.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ--GGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CcEEEECCCch
Confidence 58999999987420 1235999999999999999999999999999999999998764 59999999864
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCCC
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~LS 332 (404)
.. ...++.++|++|+..+++ .|++||+.++.................++++++.+ ++.+..+.. +..||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LS 152 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQLS 152 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcCC
Confidence 32 234567999999876654 69999998754211000000111122356777777 565554444 34799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ +.+|+++.+
T Consensus 153 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l 221 (226)
T cd03248 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVL 221 (226)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEe
Confidence 9999999999999999999999999999999999999999999864 699999999997 45 459998753
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=316.13 Aligned_cols=203 Identities=23% Similarity=0.269 Sum_probs=161.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--T-GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 254 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 489999999773 2469999999999999999999999999999999999865 1 12569999999
Q ss_pred ccCc-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC----CCccccccC
Q 015591 255 YPKV-----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----GIKDSLVGI 325 (404)
Q Consensus 255 ~~~~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~vg~ 325 (404)
.++. ...+++.++|++|++.+++ .|++||+.++...+.. .......+.+.+.++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 8753 1234677999999877666 5999999986532211 11122234456667666542 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~ 238 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAF 238 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999875 799999999987 67889999875
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=309.65 Aligned_cols=200 Identities=24% Similarity=0.387 Sum_probs=158.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|.. .++.+|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCeEEECCEEhH
Confidence 678888886631 1246999999999999999999999999999999999987764 599999998653
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccccc------CCCCC
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG------IPGVN 329 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg------~~~~~ 329 (404)
. ...++.++|++|++.+++ .|++||+.+.... . . .+.+.++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~-~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----A-D---DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----C-C---HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567999999877665 6999999874211 1 1 2234567777777654444210 01134
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+ +.+|+++.+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~-~~~d~v~~l 211 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPS-LL-DLVDRIIVM 211 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEE
Confidence 7999999999999999999999999999999999999999999999875 489999999997 34 799998753
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=315.21 Aligned_cols=211 Identities=24% Similarity=0.322 Sum_probs=167.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|.... .. + ...++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~-~~--~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG-LS--G-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc-cc--c-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 78899998774100 00 0 00135799999999999999999999999999999999998776 4699999998653
Q ss_pred h------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 Q------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
. ...++.++|++|+. .+.+..|+.||+.+..... .........+.++++++.+++. ...++.. .
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 2 12466799999986 3567789999997653211 1122334455788999999986 4555543 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++.+.+|+++.
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~ 224 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMV 224 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEE
Confidence 79999999999999999999999999999999999999999999998764 899999999987 67788999875
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=299.29 Aligned_cols=166 Identities=23% Similarity=0.433 Sum_probs=145.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.| +|+++||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 5 l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~ 65 (182)
T cd03215 5 LEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA--SGEITLDGKPVT 65 (182)
T ss_pred EEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECC
Confidence 7778887632 899999999999999999999999999999999998764 599999998753
Q ss_pred h----hhhcceeEEeecCC---CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 259 Q----ETFARVSGYCEQTD---IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~---~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. ...++.++|++|+. .+++.+|++||+.+... |
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------L 105 (182)
T cd03215 66 RRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------L 105 (182)
T ss_pred ccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------c
Confidence 2 23456799999974 46788999999976420 8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|+++++
T Consensus 106 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l 177 (182)
T cd03215 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVM 177 (182)
T ss_pred CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 999999999999999999999999999999999999999999998767999999999986 788899998753
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=310.26 Aligned_cols=208 Identities=24% Similarity=0.323 Sum_probs=163.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++.+|+||||++++||+++|+|+||||||||+++|+|+....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 488999998762 3569999999999999999999999999999999999731113469999999875
Q ss_pred ch---hhhcc-eeEEeecCCCCCCCCCHHHHHHHHhhhhcC----ccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ---ETFAR-VSGYCEQTDIHSPQITVEESVIFSAWLRLA----PEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~---~~~~~-~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ...++ .++|++|++.+++.+|+.+++.+....... ......+..+.+.++++.+++. ...++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 32 12222 478999998888889999999875432110 0111112235677889999986 34455432
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh-cccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA-FDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~-fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~ 224 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHV 224 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEE
Confidence 249999999999999999999999999999999999999999999998877999999999986 35454 798865
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=314.78 Aligned_cols=213 Identities=24% Similarity=0.327 Sum_probs=173.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC-C-C-ceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT-T-G-SMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~-~-~-~~~G~I~i~G~ 255 (404)
++++||+.+|... .+..++++||||++++||++||+|+|||||||+.+.|+|+.+ + . ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 5678887776431 123579999999999999999999999999999999999876 3 2 35689999999
Q ss_pred cCc---hhh----hcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 256 PKV---QET----FARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 256 ~~~---~~~----~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
++. .+. ..+.+++++|++ .+.|.+||.+.+.-....+.... .+++..+++.++++.+++++-....-.+|
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP 151 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSYP 151 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhCC
Confidence 642 221 235799999985 56789999998877655432111 24455678899999999987544444444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++||||||||+.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.|+|+||||+. -+.+++|++.++
T Consensus 152 --helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 152 --HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred --cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 68999999999999999999999999999999999999999999999986 5999999999997 699999998763
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=312.02 Aligned_cols=203 Identities=25% Similarity=0.289 Sum_probs=162.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc-
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP- 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~- 256 (404)
.++++|+++.|+ ++.+|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEecccc
Confidence 378899988763 346899999999999999999999999999999999998764 6999999875
Q ss_pred ----Cch---h----hhcceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCcccc
Q 015591 257 ----KVQ---E----TFARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSL 322 (404)
Q Consensus 257 ----~~~---~----~~~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~ 322 (404)
+.. . ..++.++|++|++. ..+..|+.||+.+........ ......+.+.++++.+++. ...++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR--HYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhccc--chHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12356899999864 345679999997643211100 1112345678899999986 355554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+ ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++
T Consensus 146 ~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 P-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3 479999999999999999999999999999999999999999999998754 899999999987 677889998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 220 ~~ 221 (253)
T TIGR02323 220 LV 221 (253)
T ss_pred EE
Confidence 75
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=299.54 Aligned_cols=192 Identities=19% Similarity=0.270 Sum_probs=157.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|. ++.+++ +||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS--SGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCcccC
Confidence 57788888762 234555 99999999999999999999999999999988764 699999998764
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
... ++.++|++|+...++.+|++||+.+...... ..+.++++++.+++.+..++.. ..||+|||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHH
Confidence 322 3458999998777888999999988643221 1245677888888876666553 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
++||||++.+|++|+|||||+|||+.++..+.+.|++..++|+|+|++||+++ ..+..|-+.
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~~ 193 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQILQ 193 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhheec
Confidence 99999999999999999999999999999999999877667999999999986 244466543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=311.67 Aligned_cols=198 Identities=26% Similarity=0.400 Sum_probs=152.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. +.+.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ--KGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEeH
Confidence 478889988763 1235999999999999999999999999999999999998764 59999999865
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCc-------cccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK-------DSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~vg~~~ 327 (404)
. ...+++.++|++|++.+++ .|++||+.+..... . ...+.+.++.+++.+.. +...+..
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~~~~~~~~~-----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 136 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFS-GTIMENIRLGRPNA-----T----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN- 136 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhh-hHHHHHHhccCCCC-----C----HHHHHHHHHHhChHHHHHhCcccccCHhhcC-
Confidence 3 2345677999999876665 49999998753210 1 11122223333222111 1111111
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
...||+|||||++|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||+++ ++ +.+|+++.
T Consensus 137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~ 209 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILV 209 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEE
Confidence 35799999999999999999999999999999999999999999999986 5899999999996 34 46999865
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=309.91 Aligned_cols=207 Identities=24% Similarity=0.304 Sum_probs=163.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C-CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT--T-GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 254 (404)
.++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.. + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 377888888762 3569999999999999999999999999999999999753 2 12479999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
.++.. ...++.++|++|++.+++ .|++||+.+...... ........+.+.++++.+++.+........+ ..
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFP-KSIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDKS-AL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCc-chHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhCC-cc
Confidence 87532 234677999999887776 499999987643221 1112233456778888888753211112222 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.+|++++
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~ 217 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSF 217 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEE
Confidence 799999999999999999999999999999999999999999999986 4899999999997 68888998754
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=313.07 Aligned_cols=203 Identities=24% Similarity=0.365 Sum_probs=151.0
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV- 258 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~- 258 (404)
+++|+++.|.. .+++++|+|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 ~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT--SGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC--CCEEEECCEehhh
Confidence 56788876631 01246999999999999999999999999999999999988764 699999998753
Q ss_pred --hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCCCHH
Q 015591 259 --QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 --~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~LSgG 334 (404)
....++.++|++|++.+++ .|++||+.+....+.............+.++++.+ ++....+.. +..||||
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G 143 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGER-----GSQLSGG 143 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccC-----CccCCHH
Confidence 2234567999999876654 69999998753211000000000000122222322 222222222 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++ ++. .||+++.
T Consensus 144 ~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~ 209 (238)
T cd03249 144 QKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAV 209 (238)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEE
Confidence 9999999999999999999999999999999999999999987 7999999999987 454 7999875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=311.47 Aligned_cols=205 Identities=24% Similarity=0.271 Sum_probs=164.2
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eeeEEEE
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS---MEGEIKI 252 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~---~~G~I~i 252 (404)
+..++++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.++.+ .+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 44589999999773 3569999999999999999999999999999999999876422 5799999
Q ss_pred CCccCc-------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----Cccc
Q 015591 253 GGYPKV-------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDS 321 (404)
Q Consensus 253 ~G~~~~-------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~ 321 (404)
+|.+.. ...+++.++|++|++.+++. |++||+.+........ ......+.+.++++.+++.+ ..++
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVK--RRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCC--hHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 987642 12346679999998877775 9999998864322110 11122345677777777642 2233
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 322 ~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
. ...||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++
T Consensus 158 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 158 L-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEE
Confidence 3 246999999999999999999999999999999999999999999999875 699999999997 688899998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 231 ~~ 232 (265)
T PRK14252 231 AY 232 (265)
T ss_pred EE
Confidence 75
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=333.57 Aligned_cols=206 Identities=27% Similarity=0.411 Sum_probs=180.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
-++.+|++++| +..++|+||||++++||++||+|+||||||||+|+|+|.++|+ +|+|.++|++.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~--~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD--SGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC--CceEEECCEEc
Confidence 37788888876 4567999999999999999999999999999999999998874 69999999875
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc-CccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL-APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
.. +..+..|..|.|+..+.|++||.||+.++...+. ...++.+.-.+.+.++++.+++....++.++ +||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 32 3455679999999999999999999998765543 2334556667888999999998644777765 699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||.|.|||||..+++|||||||||+|+....+.+.+.+++|+++|.+||+|||+++ |+|+.||++.++
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVl 218 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVL 218 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999997 899999998653
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=310.68 Aligned_cols=204 Identities=25% Similarity=0.318 Sum_probs=163.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc----eeeEEEEC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS----MEGEIKIG 253 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~----~~G~I~i~ 253 (404)
.+.++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.++.. ..|++.++
T Consensus 10 ~i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 38899999876 34679999999999999999999999999999999999877643 12444444
Q ss_pred CccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC----CccccccCC
Q 015591 254 GYPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGIP 326 (404)
Q Consensus 254 G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~~ 326 (404)
|.+.. ....++.++|++|++.+++.+|++||+.+...... .....+..+.+.++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 55432 22356779999998888888999999998743221 1112333456788899888853 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||+|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+...||++++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~ 224 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAF 224 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999864 799999999986 67789999875
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=308.69 Aligned_cols=207 Identities=23% Similarity=0.317 Sum_probs=158.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++|++++|+|+||||||||+++|+|+.+..+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 57788888662 35699999999999999999999999999999999998421124699999998753
Q ss_pred h---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhh-hh-c-Ccc-CChhhHHHHHHHHHHHcCCC-CCccccccCCCCC
Q 015591 259 Q---ET-FARVSGYCEQTDIHSPQITVEESVIFSAW-LR-L-APE-INSKTKAEFVNEVLETIELD-GIKDSLVGIPGVN 329 (404)
Q Consensus 259 ~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~-~~-~-~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~ 329 (404)
. .. .++.++|++|++.+++.+|+.+++.+... .+ . ... .......+.+++.++.+++. +..++.+. .
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 2 12 23568999998887777787776654321 11 0 000 11112245677888888885 34444321 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh-cccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA-FDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~-fd~~l~ 403 (404)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||+++ .+... +|+++.
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~ 218 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHV 218 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEE
Confidence 69999999999999999999999999999999999999999999999877899999999986 35544 788764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=310.88 Aligned_cols=188 Identities=26% Similarity=0.396 Sum_probs=158.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD--EGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCc--
Confidence 378899998763 356999999999999999999999999999999999998764 599999872
Q ss_pred chhhhcceeEEeecCCCCCCC--CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQ--ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~--~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
..++|++|++.+++. .|+++++.+.. .. ..+.+.++++.+++.+..++.+ ..||+||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GT----KKEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhccc------cc----cHHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999998766554 47888765421 11 1234678899999987777654 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++.+
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l 194 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCL 194 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999998765 899999999997 688899998753
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=371.61 Aligned_cols=204 Identities=25% Similarity=0.424 Sum_probs=177.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+. +++.+|+||||.|++||++||+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt--sG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT--SGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEEECCEEC
Confidence 4899999998731 1356999999999999999999999999999999999998774 59999999876
Q ss_pred ch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.+|||+|++.+++.+|++|++.+.+.++. ...++.++.++++++.++|.+..|+.++ .|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 32 2345679999999999999999999998776553 2233345667899999999888888764 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+||+++.
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~I 2142 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAI 2142 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999877999999999997 78999999875
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=327.27 Aligned_cols=218 Identities=25% Similarity=0.364 Sum_probs=183.0
Q ss_pred CCcccCCCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee
Q 015591 168 GKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME 247 (404)
Q Consensus 168 ~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~ 247 (404)
..+.+|.....+.++++++. ++ ..++++|+++||.+.+||.+||+||||||||||.|+|.|..+|. +
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~-PP----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~--~ 390 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAA-PP----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT--S 390 (580)
T ss_pred CCCCCCCCCceeeEeeeeec-CC----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC--C
Confidence 34566777778999999983 22 24578999999999999999999999999999999999988764 6
Q ss_pred eEEEECCccC---chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccccc
Q 015591 248 GEIKIGGYPK---VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324 (404)
Q Consensus 248 G~I~i~G~~~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg 324 (404)
|.|++||-++ +.+.+-+.+||.|| |..++..||.|||.-......++.+-++.+.+.+++++- .+++.+||.+|
T Consensus 391 G~VRLDga~l~qWd~e~lG~hiGYLPQ-dVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG 467 (580)
T COG4618 391 GSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIG 467 (580)
T ss_pred CcEEecchhhhcCCHHHhccccCcCcc-cceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccC
Confidence 9999999874 34678899999999 555667899999964322112222334455667788776 68899999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 325 ~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.|. .||||||||+++||||..+|.+++||||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +....|+++++
T Consensus 468 ~~G~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl 544 (580)
T COG4618 468 EGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVL 544 (580)
T ss_pred CCCC-CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeee
Confidence 8765 69999999999999999999999999999999999999999999999989999999999996 68999999863
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=315.34 Aligned_cols=208 Identities=24% Similarity=0.332 Sum_probs=163.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT---GSMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 254 (404)
.+.++||++.|. ++.+|+++||++++||+++|+|+||||||||+++|+|+.++ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999998763 35699999999999999999999999999999999998652 13579999999
Q ss_pred ccCch-----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc---------cCC-hhhHHHHHHHHHHHcCCCCCc
Q 015591 255 YPKVQ-----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP---------EIN-SKTKAEFVNEVLETIELDGIK 319 (404)
Q Consensus 255 ~~~~~-----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~l~l~~~~ 319 (404)
.++.. ...++.++|++|+..+++ .||+||+.+....+... ... .....+.+.++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87531 234567999999877666 59999999865322100 011 122345678888888875322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcc
Q 015591 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD 399 (404)
Q Consensus 320 ~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd 399 (404)
+.....+ +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|
T Consensus 191 ~~~~~~~-~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDDN-ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcCc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 2222221 357999999999999999999999999999999999999999999999975 589999999997 5788899
Q ss_pred ccc
Q 015591 400 EVK 402 (404)
Q Consensus 400 ~~l 402 (404)
+++
T Consensus 268 ~i~ 270 (305)
T PRK14264 268 QTA 270 (305)
T ss_pred EEE
Confidence 853
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=295.02 Aligned_cols=163 Identities=26% Similarity=0.439 Sum_probs=141.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV- 258 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~- 258 (404)
+++|+++.|+. .++.+++++|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT--SGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEEccc
Confidence 56788876631 1245999999999999999999999999999999999998764 599999998753
Q ss_pred --hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 --QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 --~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
...+++.++|++|++.+++ .|++||+ ||+|||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 2345677999999876665 5998886 899999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+ +.+|++++
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~ 167 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILV 167 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEE
Confidence 9999999999999999999999999999999999999999777999999999986 44 67999875
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=340.47 Aligned_cols=201 Identities=22% Similarity=0.273 Sum_probs=164.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceeeEEEECC---
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK--TTGSMEGEIKIGG--- 254 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~--~~~~~~G~I~i~G--- 254 (404)
+++|+++.| +++.+|+|+||++.+||+++|+||||||||||+++|+|+. +| .+|+|.++|
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p--~~G~i~~~~~~~ 66 (520)
T TIGR03269 2 EVKNLTKKF-------------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIYHVALC 66 (520)
T ss_pred EEEEEEEEE-------------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC--CceEEEEecccc
Confidence 567788765 3457999999999999999999999999999999999985 34 469999972
Q ss_pred --------------------ccC----------ch---hhhcceeEEeecC-CCCCCCCCHHHHHHHHhhhhcCccCChh
Q 015591 255 --------------------YPK----------VQ---ETFARVSGYCEQT-DIHSPQITVEESVIFSAWLRLAPEINSK 300 (404)
Q Consensus 255 --------------------~~~----------~~---~~~~~~~g~v~Q~-~~~~~~~Tv~e~l~~~~~~~~~~~~~~~ 300 (404)
.++ .. ...++.++|++|+ +.+++.+|++||+.++..... ....
T Consensus 67 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~ 143 (520)
T TIGR03269 67 EKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGK 143 (520)
T ss_pred ccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHH
Confidence 211 00 1235678999997 567788999999998654321 2233
Q ss_pred hHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 015591 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-T 379 (404)
Q Consensus 301 ~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~ 379 (404)
+..+++.++++.+++.+..++.+ .+||||||||++|||||+.+|++|||||||++||+.++..+++.|+++++ .
T Consensus 144 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 218 (520)
T TIGR03269 144 EAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAS 218 (520)
T ss_pred HHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999987776654 47999999999999999999999999999999999999999999999965 4
Q ss_pred CCeEEEEecCCCHHHHHhccccccC
Q 015591 380 GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 380 g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+|||++||+++ .+.+.||+++.+
T Consensus 219 g~tviivtHd~~-~~~~~~d~i~~l 242 (520)
T TIGR03269 219 GISMVLTSHWPE-VIEDLSDKAIWL 242 (520)
T ss_pred CcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 999999999997 577889998753
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=310.10 Aligned_cols=185 Identities=26% Similarity=0.362 Sum_probs=157.0
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 79999999999999999999999999999999998742 6999999987532 23455689999988778889999
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEe
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 355 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~-------~p~iLlLD 355 (404)
||+.+..... .......+.++++++.+++.+..++.+ ..||+|||||++|||||+. +|++||||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998863211 122233456789999999987666654 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|+++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~ 205 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWL 205 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 999999999999999999999777999999999987 68889999875
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=309.80 Aligned_cols=198 Identities=25% Similarity=0.349 Sum_probs=150.5
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV- 258 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~- 258 (404)
+++|+++.|+ +++.+|+|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS--SGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCEEEECCEEhhh
Confidence 5677777652 1245999999999999999999999999999999999988764 699999998643
Q ss_pred --hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHH-----HHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 259 --QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA-----EFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 259 --~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
...+++.++|++|+..++ ..|++||+.+.... ....... ..+.+.++.+ ....++....+ ...|
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~-~~~L 138 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLF-NDTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIVGER-GLKL 138 (236)
T ss_pred CCHHHHHhhEEEECCCChhh-cchHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchhhcC-CCcC
Confidence 234566799999987665 57999999875321 1111100 0122233322 11122222222 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||+++ .+ ..+|+++.
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~ 207 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIV 207 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEE
Confidence 99999999999999999999999999999999999999999999876 999999999997 45 45999875
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=311.05 Aligned_cols=188 Identities=25% Similarity=0.320 Sum_probs=168.7
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---h---hh-hcceeEEeecCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---Q---ET-FARVSGYCEQTDIHS 276 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~---~~-~~~~~g~v~Q~~~~~ 276 (404)
..-++|+||+++.||+..|||-||||||||+++|.++..|. +|+|+++|.++. . .. .++.+++|||+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept--~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT--RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC--CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 44689999999999999999999999999999999998874 599999998742 1 22 346799999999999
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
|..||.||..|+..++. ++++++++++.+.++.+||.+..+.. +++|||||||||.|||||+.+|+||++||
T Consensus 119 PhrtVl~Nv~fGLev~G---v~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQG---VPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeecC---CCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecC
Confidence 99999999999987764 56778889999999999999998887 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|+|+|||--+.++++.|.+|.++ .+||+++|||++ |.+.+-||+-
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIa 236 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIA 236 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEE
Confidence 99999999999999999999765 899999999998 7888888864
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=340.87 Aligned_cols=204 Identities=20% Similarity=0.358 Sum_probs=166.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.+ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 265 ~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~--~G~I~~~g~~~ 327 (510)
T PRK09700 265 VFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA--GGEIRLNGKDI 327 (510)
T ss_pred EEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCEEC
Confidence 47788877632 13899999999999999999999999999999999988764 59999999765
Q ss_pred ch----hhhcceeEEeecC---CCCCCCCCHHHHHHHHhhhh---cCc--c-CChhhHHHHHHHHHHHcCCC-CCccccc
Q 015591 258 VQ----ETFARVSGYCEQT---DIHSPQITVEESVIFSAWLR---LAP--E-INSKTKAEFVNEVLETIELD-GIKDSLV 323 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~---~~~~~~~Tv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~v 323 (404)
.. ...++.++|++|+ ..+++.+||+||+.+....+ ... . .......+.++++++.+++. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 32 1235678999997 35678899999998753211 000 0 01222335678899999996 6677765
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ ++.+.||+++.
T Consensus 408 -----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~ 481 (510)
T PRK09700 408 -----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAV 481 (510)
T ss_pred -----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEE
Confidence 379999999999999999999999999999999999999999999999877999999999986 68889999875
Q ss_pred C
Q 015591 404 F 404 (404)
Q Consensus 404 ~ 404 (404)
+
T Consensus 482 l 482 (510)
T PRK09700 482 F 482 (510)
T ss_pred E
Confidence 3
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=373.33 Aligned_cols=207 Identities=20% Similarity=0.250 Sum_probs=167.6
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|+|+. +.+++|+||||+|+|||.+||+|+||||||||+++|.|++++. +|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~--~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE--RGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC--CceEEECCEe
Confidence 46999999998842 2246999999999999999999999999999999999998874 5999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+|+.+++|+|++.++ ..|+||||.++.. ..+.++..+.+...+++.++ .+++..|+.+|+.|. +|||
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF-~GTIreNLd~~~~-~tdeei~~Al~~a~l~~~I~--~lp~GLdt~Vge~G~-nLSg 1377 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLF-SGTVRFNLDPFNE-HNDADLWESLERAHLKDVIR--RNSLGLDAEVSEAGE-NFSV 1377 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccc-cccHHHHhCcCCC-CCHHHHHHHHHHcCcHHHHH--hCccccCccccCCCC-CCCH
Confidence 54 357889999999977655 5699999986421 11111111122222334444 345678999998765 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|+|||||||||+||+++++.|++.|++.. +++|+|+|+|+++. ...||+++++
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVL 1445 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVL 1445 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEE
Confidence 99999999999999999999999999999999999999999875 58999999999974 4569999863
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=343.80 Aligned_cols=215 Identities=22% Similarity=0.226 Sum_probs=171.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+..... ..-..+.+.+|+||||+|++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~--~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ--GGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CcEEEECCEEC
Confidence 48999999987421000 000001246999999999999999999999999999999999998764 59999999865
Q ss_pred ch------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ..+++.++||+|++ .+++.+||.||+.+....+. .....+..+.+.++++.++|. +..++.+
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP----- 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----
Confidence 32 12456799999986 47888999999988653321 111233456788999999995 4556653
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++ .+...+|+++++
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl 537 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVM 537 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999765 999999999997 688899998753
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=291.81 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=171.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|+.+|++|+. .++++|++||++++|||++||+||||||||||||.|+|...|+ +|++.+||.+..
T Consensus 2 i~a~nls~~~-------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSL-------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEe-------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcChh
Confidence 5677888865 4578999999999999999999999999999999999988764 599999999754
Q ss_pred ---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 259 ---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 259 ---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.....+..+.++|+..+-+..||+|-+.++..-.... ....+..+.+++.+...++.+++.... ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g-~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSG-REPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccC-CCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 2445667789999988888899999999986433211 112244566889999999998877664 3699999
Q ss_pred HHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELVA------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~~------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||.+||.|+. ++++|+||||||+||...+..++++.++++++|..|++|-||++ -...++|+++++
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll 214 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLL 214 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch-HHHHhhheeeee
Confidence 999999999986 44589999999999999999999999999999999999999998 467789999863
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=342.76 Aligned_cols=208 Identities=22% Similarity=0.255 Sum_probs=169.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|... .+..++|+||||++++||++||+||||||||||+++|+|+.++. +|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~--~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA--GGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CeEEEECCEEe
Confidence 48999999987421 12356999999999999999999999999999999999998764 59999988532
Q ss_pred -------------chh---hhc-ceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-
Q 015591 258 -------------VQE---TFA-RVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG- 317 (404)
Q Consensus 258 -------------~~~---~~~-~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~- 317 (404)
... .++ +.+|||+|++ .+++.+||+||+.++..... .....+..+++.++++.++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 111 122 4689999986 56788999999999764321 1233344567889999999964
Q ss_pred --CccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHH
Q 015591 318 --IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDI 394 (404)
Q Consensus 318 --~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i 394 (404)
..+.. +.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++++++ |+|||++||++. .+
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 23444 3579999999999999999999999999999999999999999999999765 999999999986 67
Q ss_pred HHhccccccC
Q 015591 395 FEAFDEVKQF 404 (404)
Q Consensus 395 ~~~fd~~l~~ 404 (404)
.+.+|+++++
T Consensus 233 ~~~adri~vl 242 (623)
T PRK10261 233 AEIADRVLVM 242 (623)
T ss_pred HHhCCEEEEe
Confidence 8899999864
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=329.12 Aligned_cols=215 Identities=24% Similarity=0.309 Sum_probs=176.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
-++++||++.|......- ....+...+++||||++++||++||||+||||||||.++|+|+.+|. +|+|.++|.+.
T Consensus 280 ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~--~G~i~~~g~~~ 355 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS--SGSIIFDGQDL 355 (539)
T ss_pred eeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEEeCccc
Confidence 488999999986532111 00123467999999999999999999999999999999999998874 69999999762
Q ss_pred --c---hhhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCC
Q 015591 258 --V---QETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVN 329 (404)
Q Consensus 258 --~---~~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~ 329 (404)
. ....++.+-+|+|++ .+.|.+||++++.......... ..+++++++.++++.++|.. ..++. ++
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~ 428 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PH 428 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----ch
Confidence 1 123456777888875 5689999999998876544322 24566678999999999984 34443 46
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+||||||||++|||||+.+|++|++|||||+||+..+.+|+++|+++.++ |.|.|+||||++ -+...||++.++
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm 503 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVM 503 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEE
Confidence 89999999999999999999999999999999999999999999999865 999999999997 588899998763
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=336.95 Aligned_cols=210 Identities=20% Similarity=0.266 Sum_probs=168.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGG 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 254 (404)
.++++|+++.|+.. .+.+++|+|+||++++||++||+||||||||||+++|+|+.++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 38899999987310 01256999999999999999999999999999999999987652 2479999999
Q ss_pred ccCch---h---hhc-ceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC---cccc
Q 015591 255 YPKVQ---E---TFA-RVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI---KDSL 322 (404)
Q Consensus 255 ~~~~~---~---~~~-~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~ 322 (404)
.++.. . ..+ +.+||++|++. +.+.+|++|++.+...... .....+..++++++++.+++.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 87532 1 122 46999999864 5567899999886532211 12233445678899999999753 3554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+ .+||||||||++|||||+.+|++|||||||++||+.++..+++.|++++++ |+|||++||+++ .+...+|++
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 3 479999999999999999999999999999999999999999999999765 899999999997 577889998
Q ss_pred ccC
Q 015591 402 KQF 404 (404)
Q Consensus 402 l~~ 404 (404)
+.+
T Consensus 228 ~~l 230 (529)
T PRK15134 228 AVM 230 (529)
T ss_pred EEE
Confidence 753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=336.95 Aligned_cols=209 Identities=23% Similarity=0.368 Sum_probs=168.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. .+++.+|+|+||++++||+++|+||||||||||+|+|+|+.++. .+|+|.++|.++
T Consensus 259 ~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-~~G~i~~~g~~~ 327 (506)
T PRK13549 259 ILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR-WEGEIFIDGKPV 327 (506)
T ss_pred eEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-CCcEEEECCEEC
Confidence 4788888876521 02346999999999999999999999999999999999987631 359999999865
Q ss_pred ch----hhhcceeEEeecCC---CCCCCCCHHHHHHHHhhhhcCc--cCChhhHHHHHHHHHHHcCCC-CCccccccCCC
Q 015591 258 VQ----ETFARVSGYCEQTD---IHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELD-GIKDSLVGIPG 327 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~---~~~~~~Tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~ 327 (404)
.. ...++.++|++|+. .+++.+|+.||+.+........ ........+.++++++.+++. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 403 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI---- 403 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc----
Confidence 31 12345689999974 4677899999998763211100 012223345688999999996 4667664
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ ++.+.||+++.
T Consensus 404 -~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~ 477 (506)
T PRK13549 404 -ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLV 477 (506)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 379999999999999999999999999999999999999999999999878999999999997 68889999875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=336.79 Aligned_cols=209 Identities=20% Similarity=0.325 Sum_probs=168.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|.. .+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. .+|+|.++|.++
T Consensus 257 ~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~~G~i~~~g~~~ 325 (500)
T TIGR02633 257 ILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK-FEGNVFINGKPV 325 (500)
T ss_pred eEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-CCeEEEECCEEC
Confidence 4778888765410 01346999999999999999999999999999999999987641 359999999875
Q ss_pred ch----hhhcceeEEeecCC---CCCCCCCHHHHHHHHhhhhcC--ccCChhhHHHHHHHHHHHcCCCC-CccccccCCC
Q 015591 258 VQ----ETFARVSGYCEQTD---IHSPQITVEESVIFSAWLRLA--PEINSKTKAEFVNEVLETIELDG-IKDSLVGIPG 327 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~---~~~~~~Tv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~ 327 (404)
.. ...++.++|++|+. .+++.+|++||+.++...... .........+.++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 401 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI---- 401 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc----
Confidence 31 23456799999984 478889999999886421110 01122233456889999999964 456664
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||+++.
T Consensus 402 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~ 475 (500)
T TIGR02633 402 -GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLV 475 (500)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 369999999999999999999999999999999999999999999999878999999999997 68889999875
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=335.17 Aligned_cols=206 Identities=21% Similarity=0.300 Sum_probs=166.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC-Ccc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIG-GYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~-G~~ 256 (404)
.++++|+++.|+.. ..+++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++ |.+
T Consensus 279 ~l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~g~~ 348 (520)
T TIGR03269 279 IIKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT--SGEVNVRVGDE 348 (520)
T ss_pred eEEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEEecCCc
Confidence 58999999877310 012356999999999999999999999999999999999998764 6999996 532
Q ss_pred ---Cch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-----Ccccc
Q 015591 257 ---KVQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-----IKDSL 322 (404)
Q Consensus 257 ---~~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~ 322 (404)
... ...++.++|++|++.+++.+||+||+.+..... .......+.++++++.+++.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 123456899999888888899999998754221 122223456788999999964 34554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+ .+||||||||++|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++||+++ .+.+.+|++
T Consensus 425 ~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i 498 (520)
T TIGR03269 425 P-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRA 498 (520)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEE
Confidence 3 479999999999999999999999999999999999999999999999764 899999999997 688899998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 499 ~~ 500 (520)
T TIGR03269 499 AL 500 (520)
T ss_pred EE
Confidence 75
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=302.17 Aligned_cols=198 Identities=21% Similarity=0.295 Sum_probs=154.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS--SGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECCEEh
Confidence 3788999987631 2246999999999999999999999999999999999987764 69999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcc-------ccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD-------SLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~vg~~~ 327 (404)
. ...+++.++|++|++.++ ..|++||+.+... .. .+.+.+.++.+++.+..+ +..+. .
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~-~~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLF-SGTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVEE-G 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCccc-cchHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhccccccccccc-C
Confidence 3 234567899999987755 4699999975321 11 122344455555433221 11122 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
...||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++. .+|+++.
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~ 209 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLD-TII-DSDRILV 209 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEE
Confidence 35799999999999999999999999999999999999999999999986 4789999999986 454 5898875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=304.46 Aligned_cols=207 Identities=19% Similarity=0.241 Sum_probs=164.7
Q ss_pred CcEEEEeceeEEeeccc----cccc--ccc-ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee
Q 015591 176 PLTVAFQDLKYYIDTPL----EMRE--RGF-TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG 248 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~----~~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G 248 (404)
++.+.++||+..|+..- .++. .++ ....+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~--~G 79 (264)
T PRK13546 2 NVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT--VG 79 (264)
T ss_pred CceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ce
Confidence 34688888888776521 1111 112 124567999999999999999999999999999999999998764 59
Q ss_pred EEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 249 EIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 249 ~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
+|.++|. ++++.|...+.+.+|++||+.+...... ....+..+.++++++.+++.+..++.+
T Consensus 80 ~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (264)
T PRK13546 80 KVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCMG---FKRKEIKAMTPKIIEFSELGEFIYQPV----- 141 (264)
T ss_pred EEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCc-----
Confidence 9999984 3456676666678899999987643321 222333445677888888877666654
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||+|||||++|||||+.+|++|||||||+|||+.++..+++.|.++++.|+|||++||+++ ++.+.+|+++.
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~ 215 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAW 215 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEE
Confidence 479999999999999999999999999999999999999999999998777999999999986 67788998864
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=291.65 Aligned_cols=166 Identities=25% Similarity=0.451 Sum_probs=141.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+. .++.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCEEHH
Confidence 357788876631 1135999999999999999999999999999999999998764 599999998653
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ..+++.++|++|++.+++ .|++||+ ...||+|||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 245677999999876654 6998886 136999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++||||++.+|++|||||||+|||+.++..+++.|+++. +++|||++||+++ ++ +.+|+++.
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~ 168 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILF 168 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEE
Confidence 99999999999999999999999999999999999999985 5899999999997 44 46998865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=336.66 Aligned_cols=215 Identities=22% Similarity=0.273 Sum_probs=169.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+...+. ..-..+++.+|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|.++
T Consensus 275 ~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i 349 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPL 349 (529)
T ss_pred cccccCcEEEeecCccc--cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEc
Confidence 48899999877311000 0000013569999999999999999999999999999999999874 369999999865
Q ss_pred ch---h---hhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ---E---TFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~---~---~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. . .+++.++|++|+. .+++.+||+||+.++...+.. .....+..+.++++++.+++. +..++.+
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 423 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP----- 423 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----
Confidence 32 1 1356789999985 367789999999986532211 112233446688999999996 3556553
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|+++++
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l 499 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVL 499 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 479999999999999999999999999999999999999999999999865 899999999997 678899998753
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=371.18 Aligned_cols=200 Identities=22% Similarity=0.248 Sum_probs=165.9
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|.|+. +.+++|+|+||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~--~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE--KGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CceEEECCEE
Confidence 36999999998842 2356999999999999999999999999999999999998874 5999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~ 326 (404)
+. ...+|+.++||+|++.++ +.|+||||.+.. +.+ ++.+.++++.. .+++..|+.+|+.
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF-~gTIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLF-SGTVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeee-CccHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 54 356889999999977665 569999998642 111 12233334433 3455678999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++|+|||||||||+||+++++.|.+.|++.. +++|+|+|+|+++. ...||+++++
T Consensus 1369 G~-~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL 1442 (1495)
T PLN03232 1369 GE-NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVL 1442 (1495)
T ss_pred CC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEE
Confidence 65 699999999999999999999999999999999999999999999875 58999999999963 5569999863
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=320.44 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=181.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++++++.| +...+++||||++++||+.||+|+||||||||+++|.|.+.|+ +|+|.++|++.
T Consensus 4 ~l~~~~itK~f-------------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~--~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRF-------------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD--SGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEc-------------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC--cceEEECCEEe
Confidence 37778888766 3567999999999999999999999999999999999999885 59999999874
Q ss_pred c----hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 V----QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. .+..+..||+|.|+..+.+++||.||+..+.........+.+...+.++++.+.+||+-..|..++ .||.
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCc
Confidence 3 244567899999999999999999999998654322334566677889999999999877788875 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||.|-++|+++|++||||||||-|-|+..+++++.+++++++|+|||+|||.+. |+.+.+|++-+
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTV 212 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTV 212 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEE
Confidence 9999999999999999999999999999999999999999999999999999999997 89999998743
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=325.87 Aligned_cols=179 Identities=20% Similarity=0.291 Sum_probs=149.6
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
+.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~--sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN--KGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--ceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 46999999999999999999999999999999999998764 59999999641 1222334566789999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
|+.+...... ....+..+.+.++++.+++.+..++.+ ..||||||||++|||||+.+|++|||||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9988543221 222333456778899999987777664 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 364 RAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.++..+++.|++++++|+|||++||+++ ++.+.||+++.
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIiv 215 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALW 215 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999998777999999999987 68888999875
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=292.73 Aligned_cols=155 Identities=31% Similarity=0.473 Sum_probs=131.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~T 280 (404)
+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.. ..+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~--~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS--SGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 56999999999999999999999999999999999998764 6999999987532 233445677776
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
+++.+++.+..++.. ..||+|||||++|||||+.+|+++||||||+|
T Consensus 81 ----------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 445556654444432 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 361 LDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+.++..+.+.|++++++ |.|+|++||+++ ++.+.+|+++.
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~ 170 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVIL 170 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999766 899999999997 67789999875
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=294.65 Aligned_cols=171 Identities=24% Similarity=0.335 Sum_probs=142.0
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+..+.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 5677877652 356999999999999999999999999999999999984212346999999987542
Q ss_pred ---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 260 ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 260 ---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. .++.++|++|+..+++..++++++ +.. ...||+||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhc-----cccCCHHH
Confidence 12 234599999988777778877765 000 12599999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH-hcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE-AFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~-~fd~~l~ 403 (404)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+ .+|+++.
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~ 177 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHV 177 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEE
Confidence 99999999999999999999999999999999999999999777899999999997 5555 6999865
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=283.59 Aligned_cols=196 Identities=24% Similarity=0.374 Sum_probs=165.6
Q ss_pred cccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---hhhhcceeEEe
Q 015591 193 EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---QETFARVSGYC 269 (404)
Q Consensus 193 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~~~~~~~~g~v 269 (404)
+.+++.|..++.++|+|+||.+.+||..+|.||||||||||+|+++-+.+|+ +|++++.|++++ .+.+|..++||
T Consensus 5 e~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~--~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred HHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC--CceEEEcCccccccChHHHHHHHHHH
Confidence 3445566667788999999999999999999999999999999999998875 599999999854 46789999999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcC
Q 015591 270 EQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVAN 348 (404)
Q Consensus 270 ~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~ 348 (404)
.|.+.+|+ .||++|+.|+-..|... ...+.+.++++.+++.+. .++.+ .+||||||||++|+|.|..-
T Consensus 83 ~Q~paLfg-~tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~i-----t~lSGGE~QriAliR~Lq~~ 151 (223)
T COG4619 83 AQTPALFG-DTVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNI-----TELSGGEKQRIALIRNLQFM 151 (223)
T ss_pred HcCccccc-cchhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchh-----hhccchHHHHHHHHHHhhcC
Confidence 99988776 49999999998776432 123456788888898753 44443 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccc
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|+||+||||||+||+.++++|-++|.++. ++..+++-+||++. +-...+|+++
T Consensus 152 P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~i 205 (223)
T COG4619 152 PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVI 205 (223)
T ss_pred CceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEE
Confidence 99999999999999999999999999986 56899999999997 4455677654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=309.34 Aligned_cols=198 Identities=20% Similarity=0.266 Sum_probs=159.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. +...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ . +|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~--~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T--EGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C--CcEEEECCEEh
Confidence 3789999998742 23469999999999999999999999999999999999875 2 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCc-------cccccCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK-------DSLVGIPG 327 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~vg~~~ 327 (404)
. ...+++.++|++|++.+++ .|++||+..... .. .+.+.+.++.++|.+.. ++.+++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~~------~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~- 135 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYGK------WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG- 135 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhccC------CC----HHHHHHHHHHcCCHHHHHhCcccccceecCC-
Confidence 3 2356778999999888765 599999964210 11 13355667777775433 3344443
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
...||+|||||++|||||+.+|+||+|||||++||+.++..+.+.|+++. .++|||++||+++ .+. .+|+++++
T Consensus 136 g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl 209 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVI 209 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEe
Confidence 34699999999999999999999999999999999999999999999875 5899999999995 454 59998763
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=333.70 Aligned_cols=194 Identities=18% Similarity=0.218 Sum_probs=161.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~--~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL--SGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CceEEECCcccc
Confidence 78899998763 346999999999999999999999999999999999988764 599999987542
Q ss_pred ---hhhhcceeEEeecCCCC--C------CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 259 ---QETFARVSGYCEQTDIH--S------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 259 ---~~~~~~~~g~v~Q~~~~--~------~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
....++.++|++|++.. + ..+|++|++.+. ....++++++++.+++.+..++.+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~---- 133 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF---- 133 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc----
Confidence 12334568999997532 1 146888877542 112356788999999987777764
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||+++.+
T Consensus 134 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l 208 (490)
T PRK10938 134 -KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVL 208 (490)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999997 688899998753
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=297.54 Aligned_cols=185 Identities=26% Similarity=0.350 Sum_probs=144.0
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcceeEEeecCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFARVSGYCEQTDIHS 276 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~g~v~Q~~~~~ 276 (404)
+++++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL--EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 56999999999999999999999999999999999998764 5999999986432 12346799999987665
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-------ccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-------KDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
..|++||+.+.... .. +...++++.+++.+. .++..+.+ +..||+|||||++|||||+.+|
T Consensus 92 -~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGER-GINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCcccC-CCcCCHHHHHHHHHHHHHhhCC
Confidence 67999999875311 11 112334444444321 11222222 3579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 350 SIIFMDEPTTGLDARAAAIIMR--AVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 350 ~iLlLDEPtsgLD~~~~~~i~~--~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
++|||||||+|||+.++..+++ +++.+.+.|.|+|++||+++ .+ ..+|+++.+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l 214 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAM 214 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEe
Confidence 9999999999999999999998 66666666899999999997 34 569998753
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=295.86 Aligned_cols=188 Identities=21% Similarity=0.335 Sum_probs=143.9
Q ss_pred EEEeceeEEeeccccccccccccCc---eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKK---LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
++++||++.|.. .+ +.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|
T Consensus 1 l~~~~l~~~~~~-----------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~--~G~i~~~g- 66 (204)
T cd03250 1 ISVEDASFTWDS-----------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL--SGSVSVPG- 66 (204)
T ss_pred CEEeEEEEecCC-----------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC--CCeEEEcC-
Confidence 357788876631 11 36999999999999999999999999999999999988764 69999998
Q ss_pred cCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-------CccccccCCCC
Q 015591 256 PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-------IKDSLVGIPGV 328 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~vg~~~~ 328 (404)
.++|++|++.++ ..|++||+.+.... .. + ...+..+.+++.+ ..++....+ .
T Consensus 67 ---------~i~~~~q~~~l~-~~t~~enl~~~~~~------~~-~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~ 125 (204)
T cd03250 67 ---------SIAYVSQEPWIQ-NGTIRENILFGKPF------DE-E---RYEKVIKACALEPDLEILPDGDLTEIGEK-G 125 (204)
T ss_pred ---------EEEEEecCchhc-cCcHHHHhccCCCc------CH-H---HHHHHHHHcCcHHHHHhccCcccceecCC-C
Confidence 589999987765 67999999885321 11 1 1122222222211 122222222 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||+|||||++|||||+.+|++++|||||+|||+.+++.+.+ +++++.++|+|||++||+++ .+.. +|+++.
T Consensus 126 ~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~ 199 (204)
T cd03250 126 INLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVV 199 (204)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEE
Confidence 5799999999999999999999999999999999999999988 46666556899999999986 4444 998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=333.15 Aligned_cols=192 Identities=20% Similarity=0.343 Sum_probs=159.2
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCC---CCCC
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTD---IHSP 277 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~---~~~~ 277 (404)
.+++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT--AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC--CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 4899999999999999999999999999999999988764 6999999986531 22346789999975 3788
Q ss_pred CCCHHHHHHHHhhhhcCc-c--CChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 015591 278 QITVEESVIFSAWLRLAP-E--INSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 353 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLl 353 (404)
.+|+.||+.++....... . .......+.++++++.+++. +..++.++ .|||||||||+|||||+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEE
Confidence 899999998754221100 0 11222345678899999994 56677654 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 354 MDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 354 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.+|+++.+
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l 469 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVM 469 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEE
Confidence 99999999999999999999999888999999999997 688999998753
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=283.93 Aligned_cols=159 Identities=28% Similarity=0.421 Sum_probs=136.7
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|+ +++++|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.
T Consensus 2 ~~~~~~~~~~------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~---- 63 (166)
T cd03223 2 ELENLSLATP------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPEG---- 63 (166)
T ss_pred EEEEEEEEcC------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCC----
Confidence 5677887652 1246999999999999999999999999999999999988764 699999873
Q ss_pred hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 260 ~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
+.++|++|++.+ +..|++||+.+. . ...||+|||||+
T Consensus 64 ----~~i~~~~q~~~~-~~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~rv 100 (166)
T cd03223 64 ----EDLLFLPQRPYL-PLGTLREQLIYP---------------------------------W-----DDVLSGGEQQRL 100 (166)
T ss_pred ----ceEEEECCCCcc-ccccHHHHhhcc---------------------------------C-----CCCCCHHHHHHH
Confidence 568999997654 567999998752 0 136999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||+.+|++|+|||||+|||+.++..+.+.|+++ ++|+|++||+++ ....+|+++.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l 160 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDL 160 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEE
Confidence 9999999999999999999999999999999999875 689999999985 35789998753
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=287.11 Aligned_cols=163 Identities=31% Similarity=0.506 Sum_probs=138.9
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|.. .+..+++|+||++++|++++|+||||||||||+++|+|+.++. +|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~--~G~i~~~g~~~~~ 68 (171)
T cd03228 2 EFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT--SGEILIDGVDLRD 68 (171)
T ss_pred EEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECCEEhhh
Confidence 56777776531 1136999999999999999999999999999999999998764 6999999986532
Q ss_pred ---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 260 ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 260 ---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
...++.++|++|++.+++ .|++||+ ||+|||
T Consensus 69 ~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~ 102 (171)
T cd03228 69 LDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQR 102 (171)
T ss_pred cCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHH
Confidence 234667999999876554 6888876 899999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|+|++||+++ ++.. +|+++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~~-~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLS-TIRD-ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHHh-CCEEEEE
Confidence 99999999999999999999999999999999999999986 4799999999997 4555 9998753
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=283.97 Aligned_cols=183 Identities=23% Similarity=0.360 Sum_probs=156.6
Q ss_pred ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-------------h---hhhc
Q 015591 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV-------------Q---ETFA 263 (404)
Q Consensus 200 ~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~-------------~---~~~~ 263 (404)
+++...+|++||+..++|+++.|+|.|||||||+|+||.=+.+|. .|.|.+||..+. . +.+|
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~--~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R 92 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC--CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence 346678999999999999999999999999999999999887774 599999997421 1 2345
Q ss_pred ceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHH
Q 015591 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAV 343 (404)
Q Consensus 264 ~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAr 343 (404)
...|+|+|..+++..+||.||+.-+-. + -...++.+..++++..+..+|+.+..|.. | ..|||||+||++|||
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaPv-h-VLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y---P--~~LSGGQQQR~aIAR 165 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAPV-H-VLGVSKAEAIERAEKYLAKVGIAEKADAY---P--AHLSGGQQQRVAIAR 165 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcch-H-hhcCCHHHHHHHHHHHHHHhCchhhhhcC---c--cccCchHHHHHHHHH
Confidence 567999999999999999999975421 1 11345666778889999999998877754 3 469999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 344 ELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 344 aL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||...
T Consensus 166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 999999999999999999999999999999999999999999999875
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=332.36 Aligned_cols=203 Identities=18% Similarity=0.244 Sum_probs=159.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+.. ...++++|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~--------~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~--~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAP--------EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ--EGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCC--------CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEE
Confidence 469999999988521 001235999999999999999999999999999999999998874 5999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccc-ccCCCCCCCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL-VGIPGVNGLS 332 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-vg~~~~~~LS 332 (404)
+.. ..+++.++||+|++. +++.|+++|.. + ....+.++++++.+++.+..+.. -|..-...||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~-lf~~ti~~n~~--------~----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFH-LFDDLIGPDEG--------E----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChh-hhhhhhhcccc--------c----chhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 643 456788999999655 45668888841 1 11234567788888876543221 1211124699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK-NVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~-~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||++||||++++|++||||||||+||+++++.+.+.+. .+...|+|+|++||+++ ..+.+|+++++
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l 543 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKL 543 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEE
Confidence 999999999999999999999999999999999999998664 45556999999999985 56889998753
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=292.58 Aligned_cols=187 Identities=23% Similarity=0.289 Sum_probs=150.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+. ..+.+++|+||++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE--EGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCeEEECCEEh
Confidence 4889999997731 1236999999999999999999999999999999999998764 59999999875
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ....++.++|++|++.+++ .|++||+.+.. ... .+.+.+.++ + +.. ...||+|
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~----~~~~~~~l~---~----~~~-----~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYS----DEEIYGALR---V----SEG-----GLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCC----HHHHHHHhh---c----cCC-----CCcCCHH
Confidence 3 2234677999999876655 69999997531 111 112233332 2 222 3479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|++||+++ ++. .+|+++.
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~-~~d~v~~ 195 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TII-DYDKILV 195 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEE
Confidence 9999999999999999999999999999999999999999985 5899999999997 344 4899875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=296.83 Aligned_cols=182 Identities=28% Similarity=0.380 Sum_probs=149.8
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCC--CCCCHHHHHHHHh
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS--PQITVEESVIFSA 289 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~--~~~Tv~e~l~~~~ 289 (404)
|++++||+++|+|+||||||||+++|+|+.++. +|+|.++|.+.. ..++.++|++|++.+. +.+|+.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 568999999999999999999999999988764 599999998753 2456799999987653 3579999998753
Q ss_pred hhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 015591 290 WLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 368 (404)
Q Consensus 290 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~ 368 (404)
..... .........+.+.++++.+++.+..++.+ .+||+|||||++|||||+.+|++|||||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111223456788999999987776654 3699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 369 IMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 369 i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.+.|++++++|+|+|++||+++ ++.+.+|++++
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~ 185 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVL 185 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999877999999999987 68889999875
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=366.71 Aligned_cols=200 Identities=20% Similarity=0.205 Sum_probs=165.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|+|+. +..++|+||||+|+|||.+||+|+||||||||+++|.|++++. +|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~--~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA--EGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC--CCeEEECCEE
Confidence 46999999999853 2246999999999999999999999999999999999998874 5999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~ 326 (404)
+. ...+|+.+++|+|++.++ ..|+||||.... +.+ ++.+.++++..+ +++..|+.+|+.
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF-~gTIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLF-SGSLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCccc-CccHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 54 357889999999977765 469999997321 111 122334444433 446689999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++|+||+||||||+||++++..|++.|++.. +++|||+|+|+++ ....+|+++++
T Consensus 1419 G~-~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVl 1492 (1522)
T TIGR00957 1419 GE-NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVL 1492 (1522)
T ss_pred CC-cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEE
Confidence 64 699999999999999999999999999999999999999999999865 5899999999996 36679999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=321.66 Aligned_cols=212 Identities=24% Similarity=0.310 Sum_probs=175.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGY 255 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~ 255 (404)
.++++||+..|... .+...+++||||++.+||++||+|+|||||||+.+.|.|+.+++ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 48899998877532 12347999999999999999999999999999999999987654 24799999998
Q ss_pred cCc---hh----hhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 256 PKV---QE----TFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 256 ~~~---~~----~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
++. .. ...+.++|++|++ .+.|-+||.+-+.-....+... ..++..+++.++++.+++++-... -.+
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~--~~~ea~~~a~elL~~Vgl~~~~~~-~~y- 151 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG--SRAEARKRAVELLEQVGLPDPERR-DRY- 151 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHcCCCChhhh-ccC-
Confidence 642 11 1236799999985 3567789999888766655432 256677888999999999876554 123
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++||||||||+.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+. -+.+++|+++++
T Consensus 152 -PheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm 228 (539)
T COG1123 152 -PHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVM 228 (539)
T ss_pred -CcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEE
Confidence 478999999999999999999999999999999999999999999999985 5999999999997 588999999863
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=330.24 Aligned_cols=190 Identities=21% Similarity=0.344 Sum_probs=158.3
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCC---CCCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTD---IHSPQ 278 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~---~~~~~ 278 (404)
+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.. ...++.++|++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~--~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT--SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 799999999999999999999999999999999998764 5999999976532 12356799999985 46788
Q ss_pred CCHHHHHHHHhhhhcCc---cCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 015591 279 ITVEESVIFSAWLRLAP---EINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlL 354 (404)
+|++||+.+........ .....+..+.++++++.+++. +..++.+ ..||||||||++|||||+.+|++|||
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999998753211100 012223345688999999995 5667664 37999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++.
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~ 467 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILV 467 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEE
Confidence 9999999999999999999999877999999999997 68889999875
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=282.38 Aligned_cols=150 Identities=26% Similarity=0.423 Sum_probs=131.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD--SGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEECC
Confidence 35778888663 356999999999999999999999999999999999998764 599999998753
Q ss_pred h----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 259 Q----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...++.++|++| ||+|
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 2 123456788877 9999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|.|+|++||+++ ++.+.+|+++.
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~ 154 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTV 154 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999777999999999986 57788998865
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=363.25 Aligned_cols=211 Identities=23% Similarity=0.357 Sum_probs=167.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE-CCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI-GGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i-~G~~ 256 (404)
.++++||+|.|+.. .+.++|+|+||++++||++||+||||||||||+++|+|+++|. +|+|++ +|.+
T Consensus 382 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT--EGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC--CCeEEEeCCcc
Confidence 59999999988521 1246999999999999999999999999999999999998874 599999 4666
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhh-c---------C-----cc----------------------
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLR-L---------A-----PE---------------------- 296 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~-~---------~-----~~---------------------- 296 (404)
+. ...+|+.+|||+|++.+++ .|++||+.++.... . . .+
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 43 3456788999999877665 69999999974210 0 0 00
Q ss_pred --C---------ChhhHHHHHHHHHHHcC-------CCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 297 --I---------NSKTKAEFVNEVLETIE-------LDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 297 --~---------~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
. ......+.+.++++.++ +++..|+.+|..+ ..||||||||++|||||+++|+||||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g-~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNA-SKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0 00011234555555554 4556788888875 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 359 TGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 359 sgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+||+.++..|.+.|+++++ +|+|+|+++|+++. ...+|+++++
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl 652 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVL 652 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEE
Confidence 99999999999999999875 58999999999973 4789998763
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=302.78 Aligned_cols=204 Identities=21% Similarity=0.263 Sum_probs=153.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|+. .++.+|+|+||++++||+++|+|+||||||||+++|+|+.++ .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~ 84 (257)
T cd03288 18 GEIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGID 84 (257)
T ss_pred ceEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCEE
Confidence 45999999998742 124699999999999999999999999999999999998876 46999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~L 331 (404)
+.. ..+++.++|++|++.+++ .|++||+....... ............+++.++.+ +++ +..+.+ ...|
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~----~~~~~~-~~~L 157 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKCT-DDRLWEALEIAQLKNMVKSLPGGLD----AVVTEG-GENF 157 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCCC-HHHHHHHHHHhCcHHHHhhcccccC----cEeccC-CCcC
Confidence 532 345678999999876655 69999986421100 00000000011123333333 232 223322 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+|||||++|||||+.+|++|||||||+|||+.++..+.+.++++. ++.|||++||+++ ++.. +|+++.
T Consensus 158 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~ 226 (257)
T cd03288 158 SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLV 226 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 5899999999997 4554 999875
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=332.40 Aligned_cols=196 Identities=20% Similarity=0.258 Sum_probs=158.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+. ++++|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+|.+||.++
T Consensus 322 ~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEC
Confidence 6999999998841 245999999999999999999999999999999999998874 59999999985
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+++.++||+|++. +++.|++|| . . ...++.++++++.+++.+..+..-+..+..+||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~-lf~~ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgG 453 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFH-LFDQLLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKG 453 (547)
T ss_pred CCCCHHHHhhheEEEecChh-HHHHhhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHH
Confidence 4 3457788999999665 455688887 1 0 12234567888888876543321111012469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++||||++++|++||||||||+||+++++.+.+.+.+..+ .|+|+|++||+++ ....+|+++.
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~ 521 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLE 521 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEE
Confidence 99999999999999999999999999999999999999987643 5899999999984 5778999875
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=362.54 Aligned_cols=200 Identities=23% Similarity=0.241 Sum_probs=166.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|+|+. +...+|+||||+|++||.+||+|+||||||||+++|.|++++. +|+|++||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~--~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC--GGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEE
Confidence 46999999998853 2345999999999999999999999999999999999998874 5999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC-------CCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~vg~~ 326 (404)
+. ...+|+.++||+|++.+| ..||||||.... +.+ ++.+.++++..++ ++..|+.+|+.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF-~gTIreNIdp~~------~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLF-DGTVRQNVDPFL------EAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccc-cccHHHHhCccc------CCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 54 457889999999977655 569999996421 111 2334455555444 45678999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~-p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++ |+|||||||||+||+++++.|.+.|++.. +++|||+|+|+++ ....||+|+++
T Consensus 1443 G~-nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL 1517 (1560)
T PTZ00243 1443 GS-NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVM 1517 (1560)
T ss_pred cC-cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEE
Confidence 64 6999999999999999996 89999999999999999999999999864 5899999999995 56789999863
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=297.03 Aligned_cols=175 Identities=24% Similarity=0.275 Sum_probs=146.1
Q ss_pred eeeeeeeeee-----CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCC
Q 015591 206 LLYDVTGSLR-----PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 206 iL~~vs~~i~-----~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
.+++++++++ +||+++|+||||||||||+++|+|+.+|. +|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~--~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD--EGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCc---------eEEEecccccCCCCCC
Confidence 5666666665 79999999999999999999999988764 599999884 5799999877677899
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
|+|++.+...... ......+++++.+++.+..++.+ ..||||||||++|||||+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~-------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY-------THPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc-------ccHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432111 01223567888899987766654 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 361 LDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+.++..+.+.|+++++ .|+|||++||+++ .+...+|+++++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l 189 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVF 189 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999875 4899999999986 677789998753
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=312.09 Aligned_cols=209 Identities=27% Similarity=0.378 Sum_probs=180.6
Q ss_pred CCCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEEC
Q 015591 174 FEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIG 253 (404)
Q Consensus 174 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~ 253 (404)
.....+.|.+++|.|++ .+++|+++||.+++|+.+|++||||+||||++++|-+++++. +|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~~------------~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~--sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYDP------------RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITID 323 (497)
T ss_pred cccceEEEEEEEeeccc------------cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc--CceEEEc
Confidence 44557999999998853 578999999999999999999999999999999999998874 5999999
Q ss_pred CccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 254 GYPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 254 G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
|+++. ..++|+.+|.||| |..+++.|+..|+.|+.......++..+.+.+.+..+++ .+++..|+.||+.|.+
T Consensus 324 ~qdir~vtq~slR~aIg~VPQ-DtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerglk- 399 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQ-DTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLK- 399 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcc-cceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheee-
Confidence 99853 4678899999999 555677899999999865554445555556667777887 5788999999999885
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||||+|||+++++|+||+|||+||+||..++++|+..|++.. .|+|.+++.|++|. .--.|++++
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst--i~~adeiiv 469 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST--IIDADEIIV 469 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh--ccCCceEEE
Confidence 99999999999999999999999999999999999999999999986 79999999999985 334677765
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=270.26 Aligned_cols=192 Identities=27% Similarity=0.394 Sum_probs=164.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc-
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP- 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~- 256 (404)
.|++++++++| +..++|-||+++.+.||.+.|+||||||||||+++|.=+..|. +|+..|-|..
T Consensus 2 sirv~~in~~y-------------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~--sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFY-------------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHF 66 (242)
T ss_pred ceEEccccccc-------------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC--CCeEEeccccc
Confidence 46778888776 4578999999999999999999999999999999998766664 5999887753
Q ss_pred -Cc-------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCC
Q 015591 257 -KV-------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328 (404)
Q Consensus 257 -~~-------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~ 328 (404)
.+ ...+|+.+|+|+|+..++|.+||.||+.-+- .+. ...++.+.+.++.++++++.|.+.+|+. +
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----p 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----P 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----c
Confidence 11 1357888999999999999999999997542 221 2345566778889999999999999876 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
-.|||||+||++|||||+.+|++|++||||++|||+-..++.++|++|+..|.|-+++||..+
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 369999999999999999999999999999999999999999999999988999999999865
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=324.90 Aligned_cols=191 Identities=20% Similarity=0.267 Sum_probs=156.5
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---h-hhcceeEEeecCC---CCCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---E-TFARVSGYCEQTD---IHSPQ 278 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~-~~~~~~g~v~Q~~---~~~~~ 278 (404)
+|+||||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.++.. . ..++.++|++|+. .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR--GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 699999999999999999999999999999999988764 5999999986532 1 2345789999973 46788
Q ss_pred CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 015591 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP 357 (404)
+|+.||+......+..........++.++++++.+++. +..++.+ ..||||||||++|||||+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 89999996431111010011122345678999999996 6667764 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 358 TTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 358 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+|||+.+++.+.+.|++++++|.|||++|||++ ++.+.||+++.+
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l 476 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVM 476 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEE
Confidence 9999999999999999999878999999999997 688899998753
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=287.71 Aligned_cols=209 Identities=22% Similarity=0.344 Sum_probs=172.9
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
...-|.++|++..+ +++++|+|+|++|+|||.++|+|||||||||||++++|..+|. +|.+.+.|
T Consensus 28 ~~~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G 92 (257)
T COG1119 28 NEPLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLG 92 (257)
T ss_pred CcceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeee
Confidence 33459999999876 4688999999999999999999999999999999999988775 69999999
Q ss_pred ccCc---h-hhhcceeEEeecC--CCCCCCCCHHHHHHHHhhhh--cCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 255 YPKV---Q-ETFARVSGYCEQT--DIHSPQITVEESVIFSAWLR--LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 255 ~~~~---~-~~~~~~~g~v~Q~--~~~~~~~Tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
+... . .++|+.||+|.-. ..+.++.+|+|-+.-+..-. .......++..+.+..+++.+++.+.+|+..+
T Consensus 93 ~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-- 170 (257)
T COG1119 93 RRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-- 170 (257)
T ss_pred eeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh--
Confidence 7632 1 5678999999743 33456678888775433211 11112345566788999999999999998865
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT--GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||-|||||+.|||||+++|++|||||||+|||...++.+.+.|.+++.. +.++|+|||+.+ |+-.-|++++++
T Consensus 171 ---~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll 246 (257)
T COG1119 171 ---SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLL 246 (257)
T ss_pred ---hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEe
Confidence 69999999999999999999999999999999999999999999999854 789999999997 888888888764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=321.85 Aligned_cols=203 Identities=16% Similarity=0.259 Sum_probs=161.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.+ +.+|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 250 ~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS--AGTITLHGKKI 312 (491)
T ss_pred EEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC--ccEEEECCEEC
Confidence 47888887631 34899999999999999999999999999999999988764 69999999765
Q ss_pred ch----hhhcceeEEeecCC---CCCCCCCHHHHHHHHhhhhc-C-cc-CChhhHHHHHHHHHHHcCCC-CCccccccCC
Q 015591 258 VQ----ETFARVSGYCEQTD---IHSPQITVEESVIFSAWLRL-A-PE-INSKTKAEFVNEVLETIELD-GIKDSLVGIP 326 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~---~~~~~~Tv~e~l~~~~~~~~-~-~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~ 326 (404)
.. ...++.++|++|+. .+++.+|+.+|..+...... . .. .......+.+.++++.+++. +..++.+
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 389 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI--- 389 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc---
Confidence 32 12355689999974 35778888877433211000 0 01 11222345678889988885 4456654
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+||||||||++|||+++.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++ ++.+.+|+++.
T Consensus 390 --~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~ 463 (491)
T PRK10982 390 --GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILV 463 (491)
T ss_pred --ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEE
Confidence 479999999999999999999999999999999999999999999999878999999999997 68889999875
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=321.08 Aligned_cols=206 Identities=18% Similarity=0.313 Sum_probs=159.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 588888888762 35699999999999999999999999999999999997543 1369999999764
Q ss_pred ch----hhhcceeEEeecCCCCCC--CCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTDIHSP--QITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVN 329 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~--~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~ 329 (404)
.. ...++.++|++|++.+++ ..++++++.++...... .........+.++++++.+++.+ ..++.+ .
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 400 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF-----H 400 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch-----h
Confidence 21 124567999999765433 35777766543211000 00011223456889999999986 667664 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEecCCCHHHHH-hcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG-RTIVCTIHQPSIDIFE-AFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tH~~~~~i~~-~fd~~l~ 403 (404)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++
T Consensus 401 ~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~ 475 (490)
T PRK10938 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEF 475 (490)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEE
Confidence 799999999999999999999999999999999999999999999998765 47999999987 5655 5788765
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=281.45 Aligned_cols=195 Identities=27% Similarity=0.402 Sum_probs=168.2
Q ss_pred ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---hhhhcceeEEeecCCCCC
Q 015591 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---QETFARVSGYCEQTDIHS 276 (404)
Q Consensus 200 ~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~~~~~~~~g~v~Q~~~~~ 276 (404)
+++++.+|+++|+++++|.+++++|||||||||||.+++++.+.+ +|+|.++|.++. ...+.+.++..-|+....
T Consensus 10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d--~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD--SGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc--CceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 346788999999999999999999999999999999999988764 599999998753 356777888899988888
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
..+||+|-+.|+....... ...++....+++.++.++|.++.|+... +||||||||.-||..++.+.+.++|||
T Consensus 88 ~rlTV~dLv~FGRfPYSqG-Rlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQG-RLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred heeEHHHHhhcCCCcccCC-CCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCcEEEecC
Confidence 8999999999986433221 2235667889999999999999998864 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|.++||.....++|+.|++++++ |+||+++.||.+. .--+.|+++.
T Consensus 162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVA 208 (252)
T COG4604 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVA 208 (252)
T ss_pred cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheee
Confidence 99999999999999999999976 9999999999984 3335677654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=320.88 Aligned_cols=193 Identities=20% Similarity=0.321 Sum_probs=157.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.| +++++|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.
T Consensus 2 l~i~~ls~~~-------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQF-------------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS--AGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEe-------------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC---
Confidence 6788888876 2356999999999999999999999999999999999988764 599999873
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhh-hh----------cCcc------------------CChhhHHHHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAW-LR----------LAPE------------------INSKTKAEFVNEV 309 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~-~~----------~~~~------------------~~~~~~~~~~~~~ 309 (404)
+.++|++|+...++.+||+||+.++.. .+ .... ....+..++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 358999998888888999999987531 00 0000 0001223567889
Q ss_pred HHHcCCCCCc-cccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q 015591 310 LETIELDGIK-DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 310 l~~l~l~~~~-~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH 388 (404)
++.+++.+.. +..+ ..||||||||++|||+|+.+|++|||||||++||+.++..+.+.|++ .|.|||++||
T Consensus 139 l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997533 3333 47999999999999999999999999999999999999999999863 5899999999
Q ss_pred CCCHHHHHhcccccc
Q 015591 389 QPSIDIFEAFDEVKQ 403 (404)
Q Consensus 389 ~~~~~i~~~fd~~l~ 403 (404)
+++ .+.+.||+++.
T Consensus 211 d~~-~~~~~~d~i~~ 224 (530)
T PRK15064 211 DRH-FLNSVCTHMAD 224 (530)
T ss_pred CHH-HHHhhcceEEE
Confidence 997 67889999875
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=303.32 Aligned_cols=172 Identities=30% Similarity=0.418 Sum_probs=146.9
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChh
Q 015591 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK 300 (404)
Q Consensus 222 lvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~ 300 (404)
|+||||||||||+++|+|+.++. +|+|.++|.++.. ...++.++|++|+..+++.+||+||+.|+...+. ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~--~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK---VPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC---CCHH
Confidence 68999999999999999998764 6999999987532 2245679999999888999999999999754321 2233
Q ss_pred hHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 015591 301 TKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT- 379 (404)
Q Consensus 301 ~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~- 379 (404)
+..+.++++++.+++.+..++.. .+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 34567889999999988777764 479999999999999999999999999999999999999999999998765
Q ss_pred CCeEEEEecCCCHHHHHhccccccC
Q 015591 380 GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 380 g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|+|+|++||+++ ++...+|+++++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl 174 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIM 174 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 899999999997 788999998753
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=319.72 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=157.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. +++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|. +|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~--~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF--EGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC--
Confidence 488999998762 1356999999999999999999999999999999999998764 599998752
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhh-h-------------cCcc--C-----------------ChhhHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWL-R-------------LAPE--I-----------------NSKTKAE 304 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~-~-------------~~~~--~-----------------~~~~~~~ 304 (404)
..+|||+|++.+++.+||.||+.++... + .... . ...+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 3589999998888889999999875321 0 0000 0 0001134
Q ss_pred HHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 015591 305 FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384 (404)
Q Consensus 305 ~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii 384 (404)
.++++++.+++.. .++.+ .+|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 5778888888854 45554 479999999999999999999999999999999999999999999876 25999
Q ss_pred EEecCCCHHHHHhcccccc
Q 015591 385 CTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 385 ~~tH~~~~~i~~~fd~~l~ 403 (404)
++||+++ .+.+.+|+++.
T Consensus 215 iisHd~~-~~~~~~d~i~~ 232 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILE 232 (556)
T ss_pred EEeCCHH-HHHhhcCeEEE
Confidence 9999996 67788998875
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=321.53 Aligned_cols=205 Identities=22% Similarity=0.360 Sum_probs=171.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|+.++. +|+|.++|+++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT--SGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEc
Confidence 48899999987420 11256999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hh----hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQ---ET----FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~---~~----~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
.. .. .++.++|++|+..+++..|+.||+.+...... ....+..+.+.++++.+++.+..|+.. ..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG---LERKQRLLRAQELLQRLGLEDRVEYQP-----SQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhcCCc-----cc
Confidence 32 11 24679999999888888999999998653221 223445567889999999987777664 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ..+.+|+++.
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~ 215 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIE 215 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999998777999999999986 3457999875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=319.99 Aligned_cols=187 Identities=24% Similarity=0.305 Sum_probs=159.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ +. .|+++||++++||+++|+||||||||||+++|+|+.+|. +|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~--~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD--EGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEe----
Confidence 488888887652 23 589999999999999999999999999999999998764 5999885
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
..++|++|+..+.+.+||+||+.+.... .. ....++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG---SSYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999987778889999999875311 11 1124678999999987777765 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+...+|+++++
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl 527 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVF 527 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999764 899999999987 677889998763
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=351.88 Aligned_cols=199 Identities=23% Similarity=0.265 Sum_probs=166.2
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|+|+. +.+++|+||||+|++||.+||+|+||||||||+++|.|+++ .+|+|++||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999998853 23579999999999999999999999999999999999875 36999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC-------CCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~vg~~ 326 (404)
+. ...+|+.++||+|++.++ ..|+||||.... .. .++.+.++++.+++ ++..|+.+++.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF-~GTIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIF-SGTFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccC-ccCHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 64 356788999999977765 469999996421 11 12345556665554 45678899886
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++|+|||||||||+||+++...|++.|++.. +++|||+|+|+++ ....||+++++
T Consensus 1351 G~-nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL 1424 (1490)
T TIGR01271 1351 GY-VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVI 1424 (1490)
T ss_pred CC-cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEE
Confidence 54 699999999999999999999999999999999999999999999865 5899999999986 45569999863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=291.11 Aligned_cols=186 Identities=22% Similarity=0.320 Sum_probs=144.0
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...++++|+++. .+.+|+|+||++++||+++|+|+||||||||+++|+|++++. +|+|.++|
T Consensus 37 ~~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~--~G~I~i~g- 98 (282)
T cd03291 37 DNNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS--EGKIKHSG- 98 (282)
T ss_pred CCeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECC-
Confidence 345899999873 145999999999999999999999999999999999998764 59999987
Q ss_pred cCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCCCC
Q 015591 256 PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIPGV 328 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~~~ 328 (404)
.++|++|++.+++ .|++||+.+..... . . .+.+.++.+++. ...++.++.+ .
T Consensus 99 ---------~i~yv~q~~~l~~-~tv~enl~~~~~~~------~-~---~~~~~l~~~~l~~~l~~~~~~~~~~~~~~-~ 157 (282)
T cd03291 99 ---------RISFSSQFSWIMP-GTIKENIIFGVSYD------E-Y---RYKSVVKACQLEEDITKFPEKDNTVLGEG-G 157 (282)
T ss_pred ---------EEEEEeCcccccc-cCHHHHhhcccccC------H-H---HHHHHHHHhCCHHHHHhccccccceecCC-C
Confidence 3899999876665 59999998753210 0 0 111222222222 1223333322 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV-KNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||+|||||++|||+|+.+|++|||||||+|||+.++..+.+.+ +++. ++.|||++||+++. + ..+|+++.
T Consensus 158 ~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~ 230 (282)
T cd03291 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILI 230 (282)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEE
Confidence 479999999999999999999999999999999999999999865 5554 58999999999873 4 57999875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=287.60 Aligned_cols=180 Identities=26% Similarity=0.409 Sum_probs=158.1
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc-------hhhhcceeEEeecCCCCCCCCC
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV-------QETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~-------~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
=+++|..+.-.++||.|+||||||||+|+|+|+..|+ +|.|.+||..+. ....+|++|||||+-.+||.+|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 3678888875799999999999999999999998875 599999997432 1235788999999999999999
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
|+.||.|+.+.. .....+++++.+|+.++.+.. +..|||||||||+|+|||+..|++|+||||.|+
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986421 345678999999999998876 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 361 LDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||-..+.+++-.|++|.++ +..|+.+||.+. |+..+.|+++++
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~l 202 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVL 202 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEe
Confidence 9999999999999999876 889999999986 899999998763
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=315.76 Aligned_cols=186 Identities=20% Similarity=0.268 Sum_probs=155.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD--SGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCc--
Confidence 588999998763 356999999999999999999999999999999999988764 599999873
Q ss_pred chhhhcceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHH
Q 015591 258 VQETFARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgG 334 (404)
+.+||++|+.. +.+.+|++|++.+.. .. ....+.++++++.+++. +..++.+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 46899999753 445789999986421 11 11234578889999984 4556654 479999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||++ .+...+|+++.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~ 507 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIE 507 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999876 359999999997 68888999875
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=323.06 Aligned_cols=195 Identities=15% Similarity=0.246 Sum_probs=156.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ +++++|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.+++
T Consensus 451 ~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~--~G~i~~~~--- 513 (659)
T TIGR00954 451 GIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY--GGRLTKPA--- 513 (659)
T ss_pred eEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEeecC---
Confidence 589999999763 1346999999999999999999999999999999999988764 59998764
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccc------cccCCCCCCC
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS------LVGIPGVNGL 331 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~------~vg~~~~~~L 331 (404)
++.++||+|++.+++. |++||+.++........ .....+.++++++.+++.+..++ ..+. ...|
T Consensus 514 -----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~--~~~L 583 (659)
T TIGR00954 514 -----KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDW--MDVL 583 (659)
T ss_pred -----CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCccccccc--ccCC
Confidence 3568999998876655 99999998643211000 01123456788888888764433 3322 2479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||++|||||+++|+++||||||++||+.++..+.+.+++ .|+|+|++||+++ ..+.+|+++++
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l 651 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYM 651 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEE
Confidence 99999999999999999999999999999999999999998875 4899999999987 35789998763
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=315.74 Aligned_cols=194 Identities=23% Similarity=0.295 Sum_probs=155.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ +++++|+|+||+|++|++++|+|||||||||||++|+|+.+|. +|+|.+++.
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF--NGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC--
Confidence 478899998763 1356999999999999999999999999999999999998764 599998752
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhh-hc----------CccCChhh----------------------HHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWL-RL----------APEINSKT----------------------KAE 304 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~-~~----------~~~~~~~~----------------------~~~ 304 (404)
..+|||+|++.+++.+||+||+.++... +. .......+ ...
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 4689999998888899999999875321 00 00000000 113
Q ss_pred HHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 015591 305 FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384 (404)
Q Consensus 305 ~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii 384 (404)
.+.++++.+++.. .+..+ ..||||||||++|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777753 44443 479999999999999999999999999999999999999999999875 35999
Q ss_pred EEecCCCHHHHHhcccccc
Q 015591 385 CTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 385 ~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||+++ .+...+|+++.
T Consensus 213 iisHd~~-~~~~~~d~v~~ 230 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILE 230 (552)
T ss_pred EEeCCHH-HHHhhcCeEEE
Confidence 9999997 67788998875
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=287.38 Aligned_cols=182 Identities=21% Similarity=0.260 Sum_probs=149.2
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-----------ECCccCchh--h-hc--ceeEE
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK-----------IGGYPKVQE--T-FA--RVSGY 268 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~-----------i~G~~~~~~--~-~~--~~~g~ 268 (404)
.+|+|+| .+++||+++|+||||||||||+++|+|+.++. +|+|. ++|.+.... . .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~--~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN--LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC--CceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5899999 59999999999999999999999999998874 59996 778765321 1 11 23688
Q ss_pred eecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcC
Q 015591 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 348 (404)
Q Consensus 269 v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~ 348 (404)
++|.....+ .++.+++.+.. ......+.+.++++.+++.+..++.. ..||+|||||++|||+|+.+
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCc-hHHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhC
Confidence 888766666 47888887642 11223456788999999987666553 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|++++|||||++||+.++..+.+.|++++++|+|||++||+++ .+...+|+++.+
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l 212 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL 212 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 9999999999999999999999999999877999999999986 577789998753
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=314.61 Aligned_cols=189 Identities=24% Similarity=0.328 Sum_probs=156.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+.+|. +|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD--SGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCc--
Confidence 588999998762 356999999999999999999999999999999999988764 599998542
Q ss_pred chhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHH
Q 015591 258 VQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGq 335 (404)
..+||++|+. .+++.+||+||+.+...... ... ....++++++.+++.+ ..++.+ .+|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGN--REIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---ccc--cHHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999985 67788999999998643221 111 1123457889999864 446654 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++. | |||++||+++ .+...||+++.
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~ 514 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILA 514 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999862 4 8999999987 68888999875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=345.39 Aligned_cols=191 Identities=24% Similarity=0.358 Sum_probs=154.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+.. .++++|+|+|+++++||.++|+||||||||||+++|.|.+++. +|.+.
T Consensus 614 ~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~--~G~i~------ 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA--ETSSV------ 675 (1495)
T ss_pred cEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc--CCCEE------
Confidence 59999999988521 1356999999999999999999999999999999999988764 46552
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCCCCCC
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~~~~~ 330 (404)
.+++.++||+|++.++ +.|++|||.|+.. .+. ++.+++++.. .+++..++.+|+.|. +
T Consensus 676 ---~~~~~Iayv~Q~p~Lf-~gTIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~-~ 740 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIF-NATVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGV-N 740 (1495)
T ss_pred ---EecCcEEEEcCccccc-cccHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-c
Confidence 2456799999977654 6799999999742 111 2233333333 356677899999876 5
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA-VKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~-l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||||++||||++++|+|+|||||||+||+++++++++. ++... +|+|+|++||+++ ..+.+|+++++
T Consensus 741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~--~l~~aD~Ii~L 812 (1495)
T PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLH--FLPLMDRIILV 812 (1495)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChh--hHHhCCEEEEE
Confidence 999999999999999999999999999999999999988765 55443 6899999999986 57789998753
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=313.31 Aligned_cols=189 Identities=23% Similarity=0.324 Sum_probs=155.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|. +|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD--SGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeEEEECCc--
Confidence 588999988762 356999999999999999999999999999999999987764 699998542
Q ss_pred chhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHH
Q 015591 258 VQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGq 335 (404)
..+||++|+. .+++.+|++||+.++..... .... ...++++++.+++.+ ..++.+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999975 46788999999998643211 1111 223557899999864 446554 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||++ .+...+|+++.
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~ 512 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILA 512 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999873 4 8999999986 67788999875
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=264.29 Aligned_cols=186 Identities=27% Similarity=0.380 Sum_probs=161.5
Q ss_pred cccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch--hhhcceeEEee
Q 015591 193 EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ--ETFARVSGYCE 270 (404)
Q Consensus 193 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~g~v~ 270 (404)
+.+++++..+++.++.++||++.+||.+-|.|||||||||||++|+|+..|. +|+|.++|.++.. +++++..-|+-
T Consensus 4 ~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD--AGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred hhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC--CCeEEecCCCCccchhhHHHHHHHhh
Confidence 3455666677888999999999999999999999999999999999998875 5999999987543 23556667777
Q ss_pred cCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 015591 271 QTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS 350 (404)
Q Consensus 271 Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~ 350 (404)
.++.+-+.+|+.||+.|....... ...+.+.+.++.+||.+..|.+++ .||-|||||++|||-++..++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCC
Confidence 778888899999999998765442 123457889999999999999876 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 351 IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 351 iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+.|||||+++||.+....+-..+...+.+|-.||.+||||.
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 99999999999999999999999998888999999999985
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=278.15 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=138.2
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-ECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK-IGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~-i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
+|+||||++++||+++|+||||||||||+++|+|+.++. +|+|. ++|.... +.+...+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~~----------~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDALP----------LGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCceec----------cccccccCCcCcHHHH
Confidence 799999999999999999999999999999999988764 59997 7775321 2234557788999999
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
+.+...... ....+ ..+.+.+.+++.+..++.++ .||+|||||++|||||+.+|+++||||||+++|+.
T Consensus 70 l~~~~~~~~---~~~~~---~~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDE---FSHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHH---HHHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998654332 11111 12334455677766666653 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++..+.+.+.+.. +++|+|++||+++ ++...+|+++.
T Consensus 139 ~~~~~~~~l~~~~-~~~~ii~vsH~~~-~~~~~~d~i~~ 175 (213)
T PRK15177 139 TQLRMQAALACQL-QQKGLIVLTHNPR-LIKEHCHAFGV 175 (213)
T ss_pred HHHHHHHHHHHHh-hCCcEEEEECCHH-HHHHhcCeeEE
Confidence 9999999886544 3578999999997 67788999875
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=343.36 Aligned_cols=189 Identities=21% Similarity=0.366 Sum_probs=154.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee-eEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME-GEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~-G~I~i~G~~ 256 (404)
.++++|++|.|+.. .++++|+|+|+++++||.++|+||||||||||+++|.|.+++ .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE----
Confidence 59999999988521 135699999999999999999999999999999999998875 47 89875
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCCCCC
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIPGVN 329 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~~~~ 329 (404)
++.++||+|++.+ ++.||||||.|+... + +++.+++++.. .|++..++.+|+.|.
T Consensus 678 ------~~~Iayv~Q~p~L-fngTIreNI~fg~~~------d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~- 739 (1622)
T PLN03130 678 ------RGTVAYVPQVSWI-FNATVRDNILFGSPF------D----PERYERAIDVTALQHDLDLLPGGDLTEIGERGV- 739 (1622)
T ss_pred ------cCeEEEEcCcccc-CCCCHHHHHhCCCcc------c----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCC-
Confidence 3468999997665 567999999997421 1 12233444433 345677899999876
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||||||++||||++++|+|+|||||||+||++++++|.+ .++.+. +|+|+|++||+++ ..+.+|+++.
T Consensus 740 ~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~ 811 (1622)
T PLN03130 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIIL 811 (1622)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEE
Confidence 599999999999999999999999999999999999998864 566554 5899999999985 5788999875
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=286.12 Aligned_cols=219 Identities=25% Similarity=0.334 Sum_probs=183.1
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
.+.-++.+|+...|+.+..+-.. ......++++||+++++||.++|+|+||||||||-..|.++..+ +|+|.++|
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G 347 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDG 347 (534)
T ss_pred CCceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECC
Confidence 44568999998888765332111 11335699999999999999999999999999999999998764 49999999
Q ss_pred ccCch------hhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 255 YPKVQ------ETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 255 ~~~~~------~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
+++.. ..+|+.+-.|||++ .+.|.+||.+-+.-+...+.+ ..+.+++.+++.++++.+||+. ++...+
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp--~~r~RY- 423 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDP--ATRNRY- 423 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCCh--hHhhcC-
Confidence 98642 34577889999986 467999999999988766543 4567888999999999999975 233334
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++.|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-++|+||+. -+-.+||+++++
T Consensus 424 -PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm 500 (534)
T COG4172 424 -PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVM 500 (534)
T ss_pred -CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEE
Confidence 478999999999999999999999999999999999999999999999975 4999999999997 688899999863
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=258.94 Aligned_cols=138 Identities=30% Similarity=0.461 Sum_probs=123.3
Q ss_pred EEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch
Q 015591 180 AFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ 259 (404)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~ 259 (404)
+++|+++.|. +.++++++||++++||+++|+||||||||||+++|+|+.++. +|+|.++|.
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~~~---- 62 (144)
T cd03221 2 ELENLSKTYG-------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWGST---- 62 (144)
T ss_pred EEEEEEEEEC-------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCe----
Confidence 5677777652 346999999999999999999999999999999999998764 699999984
Q ss_pred hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 260 ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 260 ~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
+.++|++| ||+||+||+
T Consensus 63 ----~~i~~~~~-----------------------------------------------------------lS~G~~~rv 79 (144)
T cd03221 63 ----VKIGYFEQ-----------------------------------------------------------LSGGEKMRL 79 (144)
T ss_pred ----EEEEEEcc-----------------------------------------------------------CCHHHHHHH
Confidence 46788887 899999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||||+.+|++++|||||+|||+.++..+.+.++++ ++|+|++||+++ ++.+.+|+++.
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~ 139 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIE 139 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999876 479999999986 67788999875
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=267.07 Aligned_cols=206 Identities=24% Similarity=0.336 Sum_probs=172.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+.++. +++++|++||++|++||+.+||||||||||||.++|+|...+..++|+|.++|+++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478888888763 12589999999999999999999999999999999999987777889999999985
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCC
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LS 332 (404)
.. +..+..+...+|.|.-.|..|+.+.|+.+...+........+....+++.++.+++++ ..++.+. .++|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 32 4456778889999999999999999988765432211112345667888999999986 5666665 3799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhc--ccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF--DEV 401 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~f--d~~ 401 (404)
||||||..|+..++.+|++.|||||-||||..+-+.|.+.++++++.|.++++|||.. +++.+. |++
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~v 215 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKV 215 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEE
Confidence 9999999999999999999999999999999999999999999998899999999985 466665 544
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=277.32 Aligned_cols=176 Identities=29% Similarity=0.381 Sum_probs=147.1
Q ss_pred EEEEeceeEEeeccccccccccccC-ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEK-KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
.++++||++.|..... +... ...+++||||++++||+++|||+||||||||-|+|.|+..|. +|+|.++|.+
T Consensus 4 ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcc
Confidence 4788999998865321 1111 247999999999999999999999999999999999998874 5999999987
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGq 335 (404)
+.... ..+..+++.++++.+|+.. ..++. +++|||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----PhelSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----CcccCchh
Confidence 43211 2344567889999999764 33333 47899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+.|||||+.+|+++++|||||+||...+.+|+++|+++.++ |.|.+++|||++ .+..++|++.+
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~V 182 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAV 182 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEE
Confidence 99999999999999999999999999999999999999999865 999999999998 58888998865
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=265.51 Aligned_cols=133 Identities=26% Similarity=0.369 Sum_probs=118.0
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+++.+++++ +++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+ ++|++|...
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~---------i~~~~q~~~------- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGIT---------PVYKPQYID------- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEE---------EEEEcccCC-------
Confidence 456788884 999999999999999999999999999998764 5999999842 678777321
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
||+|||||++|||+|+.+|++++|||||++|
T Consensus 72 -------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 72 -------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCC-CeEEEEecCCCHHHHHhcccccc
Q 015591 362 DARAAAIIMRAVKNVVDTG-RTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~~~g-~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.++..+.+.++++++++ .|||++||+++ .+...+|+++.
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 144 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHV 144 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999999987664 99999999986 57778998865
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=252.59 Aligned_cols=181 Identities=26% Similarity=0.326 Sum_probs=156.4
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCch-hhhcceeEEeecCCCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~ 279 (404)
++.-+|-|+|++|.+||++.||||||||||||+..+.|...+. ..+|++++|++.++. ...+|.+|+.+|++.+||.+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 4567999999999999999999999999999999999965443 457999999987643 34578899999999999999
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
+|.+|+.|+. +..+....++..+...++..+|.+..+.. +..||||||-|+++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 9999999964 44455556777889999999999877764 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH-HhCCCeEEEEecCCC
Q 015591 360 GLDARAAAIIMRAVKNV-VDTGRTIVCTIHQPS 391 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l-~~~g~tii~~tH~~~ 391 (404)
.||..-+.++.+.+-.- ...|..+|.+|||..
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999877554 446999999999975
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=311.86 Aligned_cols=190 Identities=23% Similarity=0.338 Sum_probs=155.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|+.+|. +|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD--SGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEE-CCCc
Confidence 58888888876 2456999999999999999999999999999999999987764 599998 4321
Q ss_pred chhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHH
Q 015591 258 VQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGq 335 (404)
.+||++|+. .+++.+||.||+.+..... ... .....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 589999974 5778899999998753211 011 1134567888888885 3456654 3699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||.. .+...+|+++.+
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l 510 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIF 510 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999875 459999999986 577889998753
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=263.03 Aligned_cols=152 Identities=23% Similarity=0.362 Sum_probs=125.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
.+++|+|+||++++|++++|+|||||||||||++|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 4679999999999999999999999999999999963 2599999886321 12334677766
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVAN--PSIIFMDEPTT 359 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~--p~iLlLDEPts 359 (404)
.++++.+++... .++.. ..||+|||||++|||||+.+ |++|||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 135666677642 44442 47999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+||+.++..+.+.|++++++|+|||++||+++. + ..+|+++.+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l 161 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDF 161 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEE
Confidence 999999999999999987779999999999863 4 679998753
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=308.01 Aligned_cols=186 Identities=22% Similarity=0.304 Sum_probs=152.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+.++||++.| +++.+|+|+||+|++|+++||+|||||||||||++|+|..+|. +|+|.+++.
T Consensus 312 ~l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV--SGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCC--
Confidence 58889998876 2457999999999999999999999999999999999988764 599999742
Q ss_pred chhhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHH
Q 015591 258 VQETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgG 334 (404)
..+||++|+. .+.+..|+.+++... . .....+.+.++++.+++.. ..++.++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~~-----~----~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLARL-----A----PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHHh-----C----chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2589999963 234566787775321 0 1122356788999999963 4566653 69999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++ .| |||+||||+. .+...||+++.+
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l 500 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLV 500 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999986 34 9999999986 578889998753
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=306.18 Aligned_cols=192 Identities=22% Similarity=0.281 Sum_probs=148.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|..+|+ +|+|.++|..
T Consensus 2 i~i~nls~~~-------------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd--~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRR-------------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD--GGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEe-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCCC--
Confidence 6788888876 3467999999999999999999999999999999999987764 5999998742
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhh-----------------------hhcC-ccCChhhHHHHHHHHHHHcC
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAW-----------------------LRLA-PEINSKTKAEFVNEVLETIE 314 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~-----------------------~~~~-~~~~~~~~~~~~~~~l~~l~ 314 (404)
.++|++|..... ..|+.+.+.-... +... ...........++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 368888854322 3455554431100 0000 00001122356788999999
Q ss_pred CC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH
Q 015591 315 LD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID 393 (404)
Q Consensus 315 l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~ 393 (404)
+. +..++.++ .|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||+. .
T Consensus 138 l~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 45666654 69999999999999999999999999999999999999999988864 579999999987 5
Q ss_pred HHHhcccccc
Q 015591 394 IFEAFDEVKQ 403 (404)
Q Consensus 394 i~~~fd~~l~ 403 (404)
+...||+++.
T Consensus 209 l~~~~d~i~~ 218 (638)
T PRK10636 209 LDPIVDKIIH 218 (638)
T ss_pred HHHhcCEEEE
Confidence 7788999875
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=253.78 Aligned_cols=139 Identities=35% Similarity=0.563 Sum_probs=123.5
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~T 280 (404)
+.+++++|+++++|++++|+|+||||||||+++|+|..++. +|+|.++|.+... ...++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~--~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT--SGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 46999999999999999999999999999999999988764 6999999986432 234566888887
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
||+||+||++|||+++.+|++++|||||+|
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||..++..+.+.++++.+.++|++++||+++ ++...+|+++.+
T Consensus 111 lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l 153 (157)
T cd00267 111 LDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVL 153 (157)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 9999999999999998766899999999986 566678988753
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=271.46 Aligned_cols=190 Identities=27% Similarity=0.375 Sum_probs=158.4
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc--hhhhcceeEEeecC-CCCCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV--QETFARVSGYCEQT-DIHSPQIT 280 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~--~~~~~~~~g~v~Q~-~~~~~~~T 280 (404)
..+.+||||+|++|++++++|||||||||+||+|+|...|. +|.|.++|.+.. .+.+-+.+++|+-+ -.+.-.+-
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~--~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT--SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC--CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 45899999999999999999999999999999999998874 599999998632 23445567776533 33334445
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
+.|.+..-.... +++.++-+++.+.+.+.+++++..+..+ +.||-|||.|+.||.+|+++|++|||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 777766543332 4556666788899999999998888775 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 361 LDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||..++..|.+.|++..+ ++.||+.+||+.+ ++...||+++.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I 230 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLI 230 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEe
Confidence 999999999999999975 5999999999998 899999999864
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=328.40 Aligned_cols=193 Identities=25% Similarity=0.361 Sum_probs=153.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+. .++++|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|
T Consensus 636 ~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~--~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV--EGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC--CcEEEECC---
Confidence 5999999998742 2246999999999999999999999999999999999988764 69999987
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHH---HHHHcC-CCCCccccccCCCCCCCCH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNE---VLETIE-LDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~-l~~~~~~~vg~~~~~~LSg 333 (404)
.++||+|++.+ ++.|++||+.|+... .. ++.+.+.+ +.+.++ +++..++.+|+.|. +|||
T Consensus 700 -------~i~yv~Q~~~l-~~~Ti~eNI~~g~~~------~~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~-~LSG 763 (1522)
T TIGR00957 700 -------SVAYVPQQAWI-QNDSLRENILFGKAL------NE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGV-NLSG 763 (1522)
T ss_pred -------EEEEEcCCccc-cCCcHHHHhhcCCcc------CH-HHHHHHHHHhCCHHHHHhcCCCCCceecCCCC-CCCH
Confidence 48999998765 568999999986421 11 11111111 112222 34456788888765 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV--VDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l--~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++||||++++|++++||||||+||+.+++.+.+.+.+. ..+|+|+|++||+++ ....+|+++.+
T Consensus 764 GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l 834 (1522)
T TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVM 834 (1522)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEe
Confidence 9999999999999999999999999999999999999998753 235899999999986 35569998753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=258.82 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=167.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC-cc
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG-YP 256 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G-~~ 256 (404)
.++.+||+.++ +...+|+|+||++.+||+-+|+|||||||||++++|+|...|. +|+++++| .+
T Consensus 5 iL~~~~vsVsF-------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~--~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSF-------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ--EGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEE-------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC--cceEEEcCchh
Confidence 36677777655 4677999999999999999999999999999999999976664 59999999 55
Q ss_pred Cch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-----ccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 257 KVQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-----PEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 257 ~~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
+.. +-.|..||--+|.+..|..+||+|||..+...... ......+.++++++++...+|.+..+...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA--- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh---
Confidence 421 23456789999999999999999999986432110 001123455789999999999998888765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
.||.||||++.|++-++.+|++|+||||++|+-.+...+.-++|+.++ ..++|+++.||... +-++.|+|
T Consensus 147 --~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la-~~hsilVVEHDM~F-vr~~A~~V 216 (249)
T COG4674 147 --LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHDMGF-VREIADKV 216 (249)
T ss_pred --hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHh-cCceEEEEeccHHH-HHHhhhee
Confidence 599999999999999999999999999999999999999999999997 57999999999863 56666665
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=304.78 Aligned_cols=178 Identities=24% Similarity=0.294 Sum_probs=147.2
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-----------ECCccCchh--h---hcceeE
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK-----------IGGYPKVQE--T---FARVSG 267 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~-----------i~G~~~~~~--~---~~~~~g 267 (404)
..+|++++ .+++||+++|+||||||||||+|+|+|..+|. +|+|. ++|.++... . .+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 35899999 99999999999999999999999999988774 59997 888875321 1 112345
Q ss_pred EeecCCCCCC---CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHH
Q 015591 268 YCEQTDIHSP---QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVE 344 (404)
Q Consensus 268 ~v~Q~~~~~~---~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAra 344 (404)
+.+|.....+ ..||+|++... +..+.++++++.+++.+..|+.++ +||||||||++||+|
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHH
Confidence 6565433333 34999998641 123457889999999887777754 799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 345 LVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 345 L~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|+++ ++...+|++++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~v 283 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHI 283 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999987 999999999997 68888999865
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=300.07 Aligned_cols=192 Identities=23% Similarity=0.262 Sum_probs=146.4
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+++|. ++.+|+||||++++|++++|+|||||||||||++|+|..+|. +|+|.++|..
T Consensus 3 ~l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~--~G~I~~~~~~- 66 (635)
T PRK11147 3 LISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD--DGRIIYEQDL- 66 (635)
T ss_pred EEEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeEEEeCCCC-
Confidence 378889988763 356999999999999999999999999999999999987764 5999998732
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHh------------------------------hhhc-CccCChhhHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSA------------------------------WLRL-APEINSKTKAEFV 306 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~------------------------------~~~~-~~~~~~~~~~~~~ 306 (404)
.++|++|.+......++.+++..+. .+.. ............+
T Consensus 67 -------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (635)
T PRK11147 67 -------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRI 139 (635)
T ss_pred -------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 2466666543333345555442110 0000 0000011223567
Q ss_pred HHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q 015591 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386 (404)
Q Consensus 307 ~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~ 386 (404)
+++++.+++.. ++.+ ..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+|
T Consensus 140 ~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvliv 209 (635)
T PRK11147 140 NEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFI 209 (635)
T ss_pred HHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEE
Confidence 88999999863 4443 479999999999999999999999999999999999999999999886 3599999
Q ss_pred ecCCCHHHHHhcccccc
Q 015591 387 IHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 387 tH~~~~~i~~~fd~~l~ 403 (404)
|||+. .+...+|+++.
T Consensus 210 sHd~~-~l~~~~d~i~~ 225 (635)
T PRK11147 210 SHDRS-FIRNMATRIVD 225 (635)
T ss_pred eCCHH-HHHHhcCeEEE
Confidence 99987 57788999875
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=301.89 Aligned_cols=190 Identities=17% Similarity=0.256 Sum_probs=149.8
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|+ +++.+|+|+||+|++|++++|+|||||||||||++|+|+.+|. +|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~--~G~I~~~~~- 571 (718)
T PLN03073 507 PIISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS--SGTVFRSAK- 571 (718)
T ss_pred ceEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CceEEECCc-
Confidence 3588999998773 1245999999999999999999999999999999999988764 599998752
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGq 335 (404)
..+||++|+. .+.+++.++..+......+ .. ..+.+.++++.+++.+ ..++.+ ..|||||
T Consensus 572 -------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGq 632 (718)
T PLN03073 572 -------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPM-----YTLSGGQ 632 (718)
T ss_pred -------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCCc-----cccCHHH
Confidence 3589999964 2445666664432111111 11 1345778899999973 445543 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||++|||+|+.+|++|||||||+|||+.++..+++.|++. .| |||++|||+. .+...||+++.+
T Consensus 633 kqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l 697 (718)
T PLN03073 633 KSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVV 697 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999998888764 34 9999999987 578889998753
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=272.90 Aligned_cols=211 Identities=22% Similarity=0.294 Sum_probs=174.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG---SMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 255 (404)
++++|++..+.. ..+...++++|||++++||.+||||+||||||-..+.++|+++.. ..+|+|.++|.
T Consensus 7 L~v~nLsV~f~~---------~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~ 77 (534)
T COG4172 7 LSIRNLSVAFHQ---------EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGE 77 (534)
T ss_pred eeeeccEEEEec---------CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcCh
Confidence 788888877643 234678999999999999999999999999999999999976542 23689999999
Q ss_pred cCc---hhhhc----ceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 256 PKV---QETFA----RVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 256 ~~~---~~~~~----~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
++- ...++ ..|+++||++. +.|-.|+...+.-...++ ...+.++.++++.++++.+|+.+-...+-.+|
T Consensus 78 dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP 155 (534)
T COG4172 78 DLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAYP 155 (534)
T ss_pred hhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhCC
Confidence 742 22232 36899999864 567788888887665544 34556677788999999999988766666665
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||||||.||.||+.+|++||.||||++||...+.+|+++|++|.++ |+++++||||+. -+-...|+|.+
T Consensus 156 --HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~V 230 (534)
T COG4172 156 --HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYV 230 (534)
T ss_pred --cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEE
Confidence 689999999999999999999999999999999999999999999999765 999999999997 46677888865
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=257.17 Aligned_cols=193 Identities=23% Similarity=0.367 Sum_probs=154.6
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh---hhcceeEEeecCCC--CCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE---TFARVSGYCEQTDI--HSP 277 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~~~~~~g~v~Q~~~--~~~ 277 (404)
.+++|+++|++|.+|+++.|+|.||||||||+++|+|...++ +|+|.|+|.++... .....++-|+|++. ..+
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t--~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT--SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC--CceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 467999999999999999999999999999999999988764 59999999986542 22334677899763 579
Q ss_pred CCCHHHHHHHHhhhhcCccCC---hhhHHHHHHHHHHHc--CCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 015591 278 QITVEESVIFSAWLRLAPEIN---SKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 352 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iL 352 (404)
.+|+.||+..+..-....... ...+.+...+-+..+ |+++..++.+| -|||||||-++++.|-++.|+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pkiL 170 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKIL 170 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcEE
Confidence 999999999875321111121 122333444445544 55777777776 49999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 353 FMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 353 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|||-|++|||.++..|++.-.++.++ +.|.+||||+++ +...+-+|++.
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlIm 221 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIM 221 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEE
Confidence 999999999999999999999998754 789999999997 56777777664
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=319.27 Aligned_cols=180 Identities=24% Similarity=0.360 Sum_probs=142.2
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
+++|+|+|+++++|++++|+|||||||||||++|+|+.++. +|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~--~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS--EGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 46999999999999999999999999999999999998864 59999987 3899999887665 59999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
|+.|+.... ........+....++.++. +++..++.+|+.|. .||||||||++||||++.+|+++|||||||+||+
T Consensus 506 NI~~g~~~~-~~~~~~~~~~~~L~~~l~~--l~~g~~t~vg~~g~-~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 506 NIIFGLSYD-EYRYTSVIKACQLEEDIAL--FPEKDKTVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred HHHhccccc-hHHHHHHHHHHhHHHHHHh--ccccccccccCcCC-CcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 999874211 0000000011112233332 33445677888764 6999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 364 RAAAIIMRA-VKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 364 ~~~~~i~~~-l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.++..+++. ++++. +|+|+|++||+++. .+.+|+++.
T Consensus 582 ~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~ 619 (1490)
T TIGR01271 582 VTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILL 619 (1490)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEE
Confidence 999999974 66665 58999999999963 456999875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=304.31 Aligned_cols=202 Identities=26% Similarity=0.402 Sum_probs=178.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+..+++++.|.. .+. +++++|+.|++||+.++.|+|||||||++++|.|..++. +|++.++|.+.
T Consensus 564 ~~~~~~L~k~y~~-----------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t--~G~a~i~g~~i 629 (885)
T KOG0059|consen 564 ALVLNNLSKVYGG-----------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT--SGEALIKGHDI 629 (885)
T ss_pred eEEEcceeeeecc-----------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC--cceEEEecCcc
Confidence 4677888876632 112 899999999999999999999999999999999988874 59999999875
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
.. ...++.+|||||.|.+.+.+|.||.+.+.+++++- ...+-.+.+++.++.++|.+..++.++ .+||
T Consensus 630 ~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~---~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySg 701 (885)
T KOG0059|consen 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGL---PRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSG 701 (885)
T ss_pred ccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHcCChhhhccchh-----hCCC
Confidence 42 23678899999999999999999999999998863 334455668999999999999999875 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|+|+|+++|.||+.+|++++|||||+|+||.+++.+.+++++++++|+.||+|||..+ |...+|||+-
T Consensus 702 G~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~a 769 (885)
T KOG0059|consen 702 GNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTA 769 (885)
T ss_pred cchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999988889999999987 7888999874
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=249.08 Aligned_cols=207 Identities=22% Similarity=0.275 Sum_probs=169.2
Q ss_pred EEEEeceeEEeecccc--------ccccc--c-ccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 015591 178 TVAFQDLKYYIDTPLE--------MRERG--F-TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSM 246 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~--------~~~~~--~-~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~ 246 (404)
.++++||+..|+...+ +.+.. + .....++|+||||++++||.++|+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 3667777776654421 11111 1 234578999999999999999999999999999999999998875
Q ss_pred eeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC
Q 015591 247 EGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326 (404)
Q Consensus 247 ~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~ 326 (404)
+|+|.++|.-...- .-. -.+.|.+|.+||+.+-..+.. ...++.++.++++++..+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~li--~lg-------~Gf~pelTGreNi~l~~~~~G---~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPLI--ELG-------AGFDPELTGRENIYLRGLILG---LTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehhh--hcc-------cCCCcccchHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 59999999642111 111 223577899999999776543 456677788999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.+|-||+-||++|.|...+|+|||+||-.+.-|+.-+++=.+.++++.++++|||++||+++ .+-+.||+++.+
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l 220 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWL 220 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEE
Confidence 479999999999999999999999999999999999999999999999778899999999997 699999998753
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=279.99 Aligned_cols=192 Identities=27% Similarity=0.350 Sum_probs=152.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.| +.+.+|+|+|+++.+|+.+||||+||||||||||+|+|...+. +|+|...+.
T Consensus 3 ~i~~~~ls~~~-------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~--~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY-------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD--SGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee-------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC--CCeEeecCC--
Confidence 47788888866 4578999999999999999999999999999999999988764 599987542
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc--Ccc-------------------------CChhhHHHHHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL--APE-------------------------INSKTKAEFVNEVL 310 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~--~~~-------------------------~~~~~~~~~~~~~l 310 (404)
-.++|+.|+....+..||.+.+.-+..-.. ..+ ...-..+.++..++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 257999999888888899998876532100 000 00001135667888
Q ss_pred HHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 311 ~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
..+++.+. ++.++ +||||||.|++||++|+.+|++|+|||||++||..+..-+-+.|++. .| |+|+||||-
T Consensus 140 ~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 66654 79999999999999999999999999999999999999999998864 47 999999997
Q ss_pred CHHHHHhccccc
Q 015591 391 SIDIFEAFDEVK 402 (404)
Q Consensus 391 ~~~i~~~fd~~l 402 (404)
.. +-+.|++++
T Consensus 211 ~F-Ld~V~t~I~ 221 (530)
T COG0488 211 YF-LDNVATHIL 221 (530)
T ss_pred HH-HHHHhhheE
Confidence 53 555666654
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-32 Score=236.40 Aligned_cols=134 Identities=35% Similarity=0.573 Sum_probs=117.6
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
|+|||+++++|++++|+|+||||||||+++|+|...+ .+|+|.++|.++.. ...++.++|++|++.+++.+|++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999998776 46999999988654 456788999999988899999999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
| ...+.++++++.+++.+..+..++.+. ..||+|||||++|||||+++|++|||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 123457888999998887788776553 5799999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=296.91 Aligned_cols=208 Identities=23% Similarity=0.256 Sum_probs=169.0
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...|+|+|++.+|.+ +...||+||||+|+|||.+||||..|||||||+++|-++..+ .+|+|.|||.
T Consensus 1136 ~G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCe
Confidence 457999999998854 346799999999999999999999999999999999998776 4699999999
Q ss_pred cCch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 256 PKVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 256 ~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
++.. ..+|++++.+||++.+ +..|+|.||.=... ..+.++.++-++...++.++ .+++..|..+.+.|. ++|
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvL-FsGTvR~NLDPf~e-~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~egG~-N~S 1277 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVL-FSGTVRFNLDPFDE-YSDDEIWEALERCQLKDVVS--SLPGGLDSEVSEGGE-NFS 1277 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCce-ecCccccccCcccc-cCHHHHHHHHHHhChHHHHh--hCCcCCCceecCCCc-cCC
Confidence 8643 5789999999997775 56799999963221 11222333333444455555 455567888887654 699
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||.+++||||+++++||+|||+|+++|+++-..|++.|++-- .++|||.|+|+++. .--+|+||++
T Consensus 1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T--Vmd~DrVlVl 1346 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT--VMDSDRVLVL 1346 (1381)
T ss_pred hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch--hhhcCeEEEe
Confidence 999999999999999999999999999999999999999999854 58999999999984 3358999874
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=307.67 Aligned_cols=183 Identities=26% Similarity=0.337 Sum_probs=138.9
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+++.+|+|+|+++++|++++|+|||||||||||++|+|+.++. +|+|.++ +.++||+|++.+ ++.|+
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~--~G~i~~~----------~~i~yv~Q~~~l-~~~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS--EGRVWAE----------RSIAYVPQQAWI-MNATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEEC----------CeEEEEeCCCcc-CCCcH
Confidence 4467999999999999999999999999999999999988764 5999763 468999998765 46799
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
+||+.|+..... .......+...+++.++.+ .+..++.+++.+ ..||||||||++|||||+.+|+++||||||++|
T Consensus 738 ~enI~~~~~~~~-~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~~g-~~LSGGQkqRvaLARAl~~~p~illLDEP~saL 813 (1560)
T PTZ00243 738 RGNILFFDEEDA-ARLADAVRVSQLEADLAQL--GGGLETEIGEKG-VNLSGGQKARVSLARAVYANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHHHcCChhhH-HHHHHHHHHhhhHHHHHHh--hccchHHhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 999998532100 0000011111233334432 233455667664 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 362 DARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.++..+++.+.....+|+|+|++||+++ ..+.+|+++.
T Consensus 814 D~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~ 853 (1560)
T PTZ00243 814 DAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVA 853 (1560)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEE
Confidence 999999888754322235899999999986 3477999875
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-32 Score=295.76 Aligned_cols=202 Identities=35% Similarity=0.560 Sum_probs=179.0
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
..++|+|+|+-++||+++.++||.||||||||+.|+|..+.. ...|+|.+||++.+....++.++|+.|+|.|+|.+||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999964322 1258999999987654447889999999999999999
Q ss_pred HHHHHHHhhhhcCc----cCChhhHHH-HHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 282 EESVIFSAWLRLAP----EINSKTKAE-FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 282 ~e~l~~~~~~~~~~----~~~~~~~~~-~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
+|.|.|+++++.+. +..+.++.+ ..+.+++.+||++++|+.+|....++.||||||||+||-+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999999987762 233333322 6789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|.|||+.++.++++.|+++++. +.|.+++.|||+.+++++||.++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL 335 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILL 335 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeee
Confidence 99999999999999999999864 8999999999999999999999864
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=232.75 Aligned_cols=208 Identities=22% Similarity=0.275 Sum_probs=162.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc--
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-- 256 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~-- 256 (404)
+.++|+++++..-. + ..-..++++|+||+++.|||++|-||||+||||||++|-|.+.++ +|+|++....
T Consensus 5 l~v~~~~KtFtlH~--q----~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d--~G~I~v~H~g~~ 76 (235)
T COG4778 5 LNVSNVSKTFTLHQ--Q----GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD--EGQILVRHEGEW 76 (235)
T ss_pred eeeecchhheEeee--c----CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC--CceEEEEeCcch
Confidence 66777766553210 0 011357999999999999999999999999999999999988775 5999986432
Q ss_pred Cc-----h----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCC
Q 015591 257 KV-----Q----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327 (404)
Q Consensus 257 ~~-----~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~ 327 (404)
++ . ...++.+|||.|.-...|..+..|-+.-+...+ ........+++.+++.++++++..=.+ +
T Consensus 77 vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L---a- 149 (235)
T COG4778 77 VDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL---A- 149 (235)
T ss_pred hhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC---C-
Confidence 11 1 223567899999877788888777776655433 344555667788999999887533222 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+...||||+||+.|||.++.+-+||+|||||+.||..++..++++|++-+.+|..+|=|-||-+ --...+||++
T Consensus 150 PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee-vre~vadR~~ 223 (235)
T COG4778 150 PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE-VREAVADRLL 223 (235)
T ss_pred CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH-HHHHHhhhee
Confidence 3579999999999999999999999999999999999999999999998878999999999964 3455688876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=289.77 Aligned_cols=192 Identities=22% Similarity=0.369 Sum_probs=157.3
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|.+++.+.. +..+.|+||||+|++|+.+||+|+-|||||+||.+|.|..+. .+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~--~sG~v~v~gs- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK--LSGSVAVNGS- 583 (1381)
T ss_pred ceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc--ccceEEEcCe-
Confidence 358888888875431 234489999999999999999999999999999999997764 5699999984
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC-------CCCccccccCCCCC
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DGIKDSLVGIPGVN 329 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~vg~~~~~ 329 (404)
++||+|++.. .+.||||||.|+..+ . +++.+++++.+.| ++...|.+|+.|.
T Consensus 584 ---------iaYv~Q~pWI-~ngTvreNILFG~~~-------d---~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi- 642 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWI-QNGTVRENILFGSPY-------D---EERYDKVIKACALKKDLEILPFGDLTEIGERGI- 642 (1381)
T ss_pred ---------EEEeccccHh-hCCcHHHhhhcCccc-------c---HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-
Confidence 7999998775 567999999997532 1 2334555555544 3566788999988
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+||||||||+++|||+.++++|++||.|.|++|++....|.+..-+..-+++|+|++|||. +..+.+|.++++
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl 715 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVL 715 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEe
Confidence 4999999999999999999999999999999999999998865544334689999999986 579999998863
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=288.08 Aligned_cols=204 Identities=17% Similarity=0.176 Sum_probs=140.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceeeEEEECCc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT-GSMEGEIKIGGY 255 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~-~~~~G~I~i~G~ 255 (404)
..|.++|++++|. ++.+|+|+||+|++|+++||+|+|||||||||++|+|+... -+.+|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 4589999999773 35699999999999999999999999999999999996311 123578865433
Q ss_pred c-----Cch------------hhhcceeEEeecCCCCCCCCCHHHHHHHHhh---------------hhcCccCChhhHH
Q 015591 256 P-----KVQ------------ETFARVSGYCEQTDIHSPQITVEESVIFSAW---------------LRLAPEINSKTKA 303 (404)
Q Consensus 256 ~-----~~~------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~---------------~~~~~~~~~~~~~ 303 (404)
. ... ...++.+++++|.+..... ++.++...... ...-.........
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 2 110 0012234566654322111 11111100000 0000000011223
Q ss_pred HHHHHHHHHcCCC-CCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 015591 304 EFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT 382 (404)
Q Consensus 304 ~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 382 (404)
+++.+++..+++. +..++.+ ..||||||||++||++|+.+|++|||||||++||+.++..+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4567788888885 3345543 479999999999999999999999999999999999999999999875 689
Q ss_pred EEEEecCCCHHHHHhcccccc
Q 015591 383 IVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 383 ii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++||+.. .+.+.||+++.
T Consensus 394 viivsHd~~-~l~~~~d~i~~ 413 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILH 413 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEE
Confidence 999999986 57788999875
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=230.03 Aligned_cols=212 Identities=21% Similarity=0.297 Sum_probs=169.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++|+++.+...... +......+++.|||+++.|+.+|++|.||||||||.|+|+|...|. +|+|++||+++.
T Consensus 5 LeV~nLsKtF~~~~~l----f~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT--sG~il~n~~~L~ 78 (267)
T COG4167 5 LEVRNLSKTFRYRTGL----FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGEILINDHPLH 78 (267)
T ss_pred hhhhhhhhhhhhhhhh----hhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC--CceEEECCcccc
Confidence 5566776654332111 1223346899999999999999999999999999999999998874 599999999864
Q ss_pred hh---hhcceeEEeecCCC--CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCC
Q 015591 259 QE---TFARVSGYCEQTDI--HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~~---~~~~~~g~v~Q~~~--~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LS 332 (404)
.. ...+.+-+++|++. +.|.+.+..-+..+. +...+.....+.+++.+-++.+||- +.++.. ++.||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la 151 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLA 151 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcC
Confidence 32 23467889999864 456677777666654 4445566677888899999999985 444443 35799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.||||||++||||+.+|+|+|.||+.++||..-+.++.+++.+|.++ |.+-|.++.++- -+-++.|++++.
T Consensus 152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM 223 (267)
T COG4167 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVM 223 (267)
T ss_pred chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEE
Confidence 99999999999999999999999999999999999999999999865 999999999987 588899998863
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=229.83 Aligned_cols=198 Identities=26% Similarity=0.388 Sum_probs=144.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc---
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY--- 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~--- 255 (404)
++++++++.|. ...-.+||||.+.|||+.+|+|+|||||||||+||+++..|+ .|+|.+.-.
T Consensus 7 L~V~~lsk~Yg-------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~--~G~v~Y~~r~~~ 71 (258)
T COG4107 7 LSVSGLSKLYG-------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQ 71 (258)
T ss_pred eeehhhhhhhC-------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC--CCeEEEEcCCCC
Confidence 77788887663 345788999999999999999999999999999999998875 599988543
Q ss_pred cC-----chhh----hcceeEEeecCCCCCCCC------CHHHHHHH-HhhhhcCccCChhhHHHHHHHHHHHcCCCCCc
Q 015591 256 PK-----VQET----FARVSGYCEQTDIHSPQI------TVEESVIF-SAWLRLAPEINSKTKAEFVNEVLETIELDGIK 319 (404)
Q Consensus 256 ~~-----~~~~----~~~~~g~v~Q~~~~~~~~------Tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 319 (404)
+. .+.+ .|-.-|+|.|++.-=-.+ .+.|-+.- ++ | .. ....+.+.++++.++++..
T Consensus 72 ~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~--R---HY--G~iR~~a~~WL~~VEI~~~- 143 (258)
T COG4107 72 PRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA--R---HY--GNIRAEAQDWLEEVEIDLD- 143 (258)
T ss_pred chhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh--h---hh--hhHHHHHHHHHHhcccCcc-
Confidence 21 1111 123469999986422122 23333221 11 1 11 1224456788888887632
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhc
Q 015591 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 320 ~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~f 398 (404)
..-.. +..+|||++||+.|||.|+..|+++|+||||.|||..-+..++++++.|..+ |.+++++|||+.. .--+.
T Consensus 144 -RiDD~--PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla 219 (258)
T COG4107 144 -RIDDL--PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLA 219 (258)
T ss_pred -cccCc--ccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhh
Confidence 22122 3579999999999999999999999999999999999999999999999865 9999999999852 23345
Q ss_pred ccccc
Q 015591 399 DEVKQ 403 (404)
Q Consensus 399 d~~l~ 403 (404)
|++++
T Consensus 220 ~rlmv 224 (258)
T COG4107 220 DRLMV 224 (258)
T ss_pred hccee
Confidence 66554
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=243.16 Aligned_cols=182 Identities=23% Similarity=0.302 Sum_probs=123.1
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHH-HHHhCCCCCCceeeEEEE------------CCccCc-hhhhc-ceeE
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLL-DVLAGRKTTGSMEGEIKI------------GGYPKV-QETFA-RVSG 267 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl-~~L~g~~~~~~~~G~I~i------------~G~~~~-~~~~~-~~~g 267 (404)
+.++|+||||++++||+++|+|+||||||||+ ..+.. .|++.+ ...... ....+ ....
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 45699999999999999999999999999995 44431 122111 000000 00111 1223
Q ss_pred EeecCCC--CCCCCCHHH---HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHH
Q 015591 268 YCEQTDI--HSPQITVEE---SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTI 341 (404)
Q Consensus 268 ~v~Q~~~--~~~~~Tv~e---~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~I 341 (404)
+..|++. ..+..++.. ...+...+. ......+. .+.++.+++.+ ..+... ..||||||||++|
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~l 148 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRL 148 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHH
Confidence 3333332 234445442 222211111 11111222 46788889875 355543 4799999999999
Q ss_pred HHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 342 AVELVANP--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 342 AraL~~~p--~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|++||+++ ++ +.+|+++++
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l 211 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDI 211 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEe
Confidence 99999998 599999999999999999999999999877999999999986 34 689998753
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=240.54 Aligned_cols=163 Identities=19% Similarity=0.233 Sum_probs=126.3
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-------ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCC
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-------SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-------~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
+++++++++| +++|+||||||||||+++|+|+..+. ...|++.++|.+......++.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999875332 12356777777643333457799999977654
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeC
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV----ANPSIIFMDE 356 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~----~~p~iLlLDE 356 (404)
|+. . ..++++++++. .+..++.+ ..||+|||||++||++++ .+|++++|||
T Consensus 89 ------~~~----~-------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI----I-------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE----E-------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 210 0 02345566665 34445443 479999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||+..+..+.+.|+++++ +.|||++||+++ ..+.+|+++.
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~ 187 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYG 187 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEE
Confidence 9999999999999999999864 789999999986 3578999874
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=237.36 Aligned_cols=184 Identities=25% Similarity=0.331 Sum_probs=137.2
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh-----C---CC--CCC---------ceeeEEEECCccCch-----
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA-----G---RK--TTG---------SMEGEIKIGGYPKVQ----- 259 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~-----g---~~--~~~---------~~~G~I~i~G~~~~~----- 259 (404)
..-|+|||..|+.|++++|.|+||||||||++.+. . .. .++ ...--|.++..|+..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 1 10 010 011236777765321
Q ss_pred --------hhhcc----------------eeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC
Q 015591 260 --------ETFAR----------------VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315 (404)
Q Consensus 260 --------~~~~~----------------~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 315 (404)
...|+ .+.|..+.......+|+.|++.|...+. +.+.+.++++.++|
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 00111 1334444444457899999999875432 12446778999999
Q ss_pred CC-CccccccCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 316 DG-IKDSLVGIPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 316 ~~-~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~---p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.. ..+... ..||||||||+.|||+|+.+ |+++||||||+|||+..+..+.+.|+++.++|.|||+++|+++
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 344443 47999999999999999996 7999999999999999999999999999878999999999986
Q ss_pred HHHHHhcccccc
Q 015591 392 IDIFEAFDEVKQ 403 (404)
Q Consensus 392 ~~i~~~fd~~l~ 403 (404)
..+.+|+++.
T Consensus 234 --~i~~aD~ii~ 243 (261)
T cd03271 234 --VIKCADWIID 243 (261)
T ss_pred --HHHhCCEEEE
Confidence 3467999875
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=254.62 Aligned_cols=188 Identities=27% Similarity=0.353 Sum_probs=151.3
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
+..++++|+++.|+ +++.+++++||.+.+|+.+||+||||+|||||||+|+|...+. +|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~--~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL--SGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC--CceEEeCCc
Confidence 44689999998763 2267999999999999999999999999999999999976654 699987532
Q ss_pred cCchhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCH
Q 015591 256 PKVQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLST 333 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSg 333 (404)
-.+||..|+. .+.+..|+.|++.-.. +.. ....+...+..+++.. ...+.+ ..|||
T Consensus 385 --------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~----~e~~~r~~L~~f~F~~~~~~~~v-----~~LSG 442 (530)
T COG0488 385 --------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDG----DEQEVRAYLGRFGFTGEDQEKPV-----GVLSG 442 (530)
T ss_pred --------eEEEEEEehhhhcCccCcHHHHHHhhC-----ccc----cHHHHHHHHHHcCCChHHHhCch-----hhcCH
Confidence 2579999975 3347779999886432 111 1456788899999864 334554 46999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||.|+.+|+.++.+|.+|||||||+.||..+...+.+.|.+. .-|||+||||... +-..+++++.
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~F-l~~va~~i~~ 508 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYF-LDRVATRIWL 508 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHH-HHhhcceEEE
Confidence 9999999999999999999999999999999999999998864 4699999999863 5666777654
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=235.47 Aligned_cols=184 Identities=15% Similarity=0.222 Sum_probs=126.3
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC----------------CCCCceee--------EEEECCcc-
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR----------------KTTGSMEG--------EIKIGGYP- 256 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~----------------~~~~~~~G--------~I~i~G~~- 256 (404)
+++.++++++ |++++|+||||||||||+++|++. ..++ +| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~--~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG--SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC--CCCCCceEEEEEEEEcCCC
Confidence 3456888887 789999999999999999999832 2222 23 55555532
Q ss_pred ---C--chhhhcceeEEeecCCCCCC-CCCHHHHHHHHhhhhcCccCCh-hhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 257 ---K--VQETFARVSGYCEQTDIHSP-QITVEESVIFSAWLRLAPEINS-KTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 257 ---~--~~~~~~~~~g~v~Q~~~~~~-~~Tv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
. .....++.+++++|...+++ ..|..|...+............ .... .++.+.+++.+..+.. +.
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~q---g~i~~l~~l~~~~~~~-----~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQ---GKINSLTNMKQDEQQE-----MQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEc---CchHHhhhcccccccc-----cc
Confidence 1 11234567889888665555 3577666555443322111000 0001 1223333444333443 34
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||++|||+|+. +|++++|||||+|||+.++..+++.|+++++ ++|+|+++|++ ++...+|+++.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~ 232 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYG 232 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEE
Confidence 799999999999999973 5899999999999999999999999999864 78899999985 57889999875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=243.83 Aligned_cols=191 Identities=20% Similarity=0.400 Sum_probs=162.4
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecC---CCCCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQT---DIHSPQ 278 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~---~~~~~~ 278 (404)
.++|+||++++||+++|-|-=|||+|-|+++|.|..+. .+|+|.++|+++.. ...+..++||+.+ +-++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 58899999999999999999999999999999996554 36999999997532 3456789999975 457889
Q ss_pred CCHHHHHHHHhhhhcCc--cCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 015591 279 ITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLD 355 (404)
++|++|+.++...+... .++.+...+.+++.++.+++.- ..+..+ ..||||.+||+.|||.|..+|++||||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 99999999983323221 3455566678899999988853 334444 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||.|.|.-++.+|.++|++++++|++||++|-++. |+..+||||+++
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm 474 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVM 474 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEE
Confidence 999999999999999999999999999999999997 899999999874
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-28 Score=233.11 Aligned_cols=177 Identities=15% Similarity=0.238 Sum_probs=131.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc-cCch-----hhhcceeEEeecCC---------CCCCCCCH
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY-PKVQ-----ETFARVSGYCEQTD---------IHSPQITV 281 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~-~~~~-----~~~~~~~g~v~Q~~---------~~~~~~Tv 281 (404)
..+++|+||||||||||+++|++...+. ..|+++..|. ++.. ......+++++|++ ...+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4499999999999999999999976542 2367777765 3211 11234788999974 23567889
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC--------------------CccccccCCCCCCCCHHHHHHHHH
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG--------------------IKDSLVGIPGVNGLSTEQRKRLTI 341 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--------------------~~~~~vg~~~~~~LSgGqrqRl~I 341 (404)
.+++......+... .......+.+.++++.+++.. ..+.. +..||+|||||++|
T Consensus 104 ~r~I~~~~~~~~~i-n~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~-----~~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLI-NGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKES-----LTELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEE-CCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccc-----ccccCHHHHHHHHH
Confidence 88886543221100 012223467888899988851 11222 35799999999999
Q ss_pred HHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 342 AVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 342 AraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|+ .+|++++|||||++||+.++..+.+.|+++. +|.|+|++||++ ++++.+|+++-
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~ 240 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFR 240 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEE
Confidence 99998 5789999999999999999999999999985 589999999994 68889999863
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-29 Score=234.00 Aligned_cols=176 Identities=14% Similarity=0.177 Sum_probs=129.6
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+++.+++++++ ++++|+||||||||||+++|.- ++|.+.. ...++.+++++|.....+.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHHHhcCCCCCCCCce
Confidence 45679999987 8999999999999999999971 1232211 1112457888888777888888
Q ss_pred HHHHHHHhhhhcC-----ccCChhhHHH--HHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc----CCC
Q 015591 282 EESVIFSAWLRLA-----PEINSKTKAE--FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA----NPS 350 (404)
Q Consensus 282 ~e~l~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~----~p~ 350 (404)
++.+.+....... ..+....... ...++++.+++.+..++.+ ..||+|||||++||||++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 8877665432110 0011111000 1245566677777666654 3699999999999999974 579
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 351 IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 351 iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+++|||||+|||+.++..+.+.+++++ ++.|+|++||++ ++...+|+++.
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~ 201 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVG 201 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEE
Confidence 999999999999999999999999985 568899999995 67889999875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=244.14 Aligned_cols=188 Identities=26% Similarity=0.348 Sum_probs=151.4
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|++..-+ .+...|++.++.+++||-+-|.||||||||||+|+|+|+.+.+. |+|..-.
T Consensus 391 ~~i~~~nl~l~~p------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~--G~I~~P~-- 454 (604)
T COG4178 391 HGITLENLSLRTP------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS--GRISMPA-- 454 (604)
T ss_pred ceeEEeeeeEECC------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC--CceecCC--
Confidence 4699999997543 23579999999999999999999999999999999999998764 8875531
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccC-CCCCCCCHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI-PGVNGLSTEQ 335 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~-~~~~~LSgGq 335 (404)
...+-|+||.+. +|..|.||.+.++.... . -.++.+.+++..++|.+..+.+-+. +..+.||+||
T Consensus 455 ------~~~~lflpQ~PY-~p~GtLre~l~YP~~~~---~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GE 520 (604)
T COG4178 455 ------DSALLFLPQRPY-LPQGTLREALCYPNAAP---D----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGE 520 (604)
T ss_pred ------CCceEEecCCCC-CCCccHHHHHhCCCCCC---C----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhH
Confidence 123579999776 56779999999864221 1 2345577888888888776655433 1234599999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHH
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIF 395 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~ 395 (404)
||||++||.|+++|++++|||.||+||+.++..+++.+++-. .+.|||-|.|++...-|
T Consensus 521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~ 579 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNF 579 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHH
Confidence 999999999999999999999999999999999999998743 48999999999875433
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-27 Score=218.68 Aligned_cols=162 Identities=20% Similarity=0.220 Sum_probs=119.3
Q ss_pred eeeeeeCCcEEEEEcCCCCcHHHHHHHHh----CCCCCCceeeEEEECCccCchhhhcceeEEeecCC-----CCCCCCC
Q 015591 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLA----GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTD-----IHSPQIT 280 (404)
Q Consensus 210 vs~~i~~Ge~~alvG~sGaGKSTLl~~L~----g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~-----~~~~~~T 280 (404)
.++++.+| +++|+||||||||||+++|. |...++ .|.+..+...+.....+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34566778 99999999999999999994 766543 254441111122223456788999876 2234458
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH------HHHHHHHhcCCCEEEE
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR------LTIAVELVANPSIIFM 354 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR------l~IAraL~~~p~iLlL 354 (404)
+.||+.+.. . ..+++.+ +.. +..||+||||| ++|||+++.+|++++|
T Consensus 93 ~~~~~~~~~---------~----~~~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------Q----GESNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------h----HHHHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888886531 1 1122222 222 24699999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAA-IIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~-~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++||+..+. .+.+.|++++++ |.|||++||+++ ....+|+++.
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~ 194 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYR 194 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEE
Confidence 9999999999999 999999998766 899999999975 4567998874
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=215.00 Aligned_cols=175 Identities=18% Similarity=0.112 Sum_probs=114.9
Q ss_pred eeeeeeee-CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc-c-CchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 208 YDVTGSLR-PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY-P-KVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 208 ~~vs~~i~-~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~-~-~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
++++|... +|++++|+||||||||||+++|++... +...+....+.. . +........+++++|.+.... ++...
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 45666644 589999999999999999999996321 112233332211 1 111233456888988653211 11111
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc----------CCCEEEE
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA----------NPSIIFM 354 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~----------~p~iLlL 354 (404)
. ..+..+..+.+ .++..++.+..+.. +..||+|||||++|||+|+. +|+++||
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 11111111100 12222333333443 34799999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++||+.+...+.+.|++++++|.|+|++||+++ .+...+|++++
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~ 205 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEV 205 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEE
Confidence 9999999999999999999999867999999999986 46666777654
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-27 Score=207.15 Aligned_cols=180 Identities=27% Similarity=0.415 Sum_probs=149.7
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
|-.+|.++..||++-+||||||||||||-.++|+.+ .+|+|.++|.++.. .++.|..+|..|+..-.+.|.|..
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 678899999999999999999999999999999865 35999999998643 356677789999887778899999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA-----NP--SIIFMDE 356 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~-----~p--~iLlLDE 356 (404)
.+... ++ .++....++++...+++.+...+.+ +.|||||-|||-+|...+. || ++|++||
T Consensus 92 YL~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE 158 (248)
T COG4138 92 YLTLH----QP----DKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158 (248)
T ss_pred hhhhc----Cc----hHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecC
Confidence 88763 22 2455667788888888887665553 5799999999999977653 44 4899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|.++||...+..+.+.|.+++..|.+|||+.||++ ......|++.+
T Consensus 159 P~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wL 204 (248)
T COG4138 159 PMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWL 204 (248)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHH
Confidence 99999999999999999999999999999999998 46666776654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-26 Score=223.87 Aligned_cols=195 Identities=21% Similarity=0.277 Sum_probs=150.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
+++++|+.|.|... .--+..||+++++||++-|+|.||||||||+++|.|++.|+ +|+|++||.|+
T Consensus 322 ~lelrnvrfay~~~------------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq--sG~I~ldg~pV 387 (546)
T COG4615 322 TLELRNVRFAYQDN------------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPV 387 (546)
T ss_pred ceeeeeeeeccCcc------------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC--CCceeECCccC
Confidence 59999999988531 13478999999999999999999999999999999999885 59999999987
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
+. +++|+..+-|+.+..+++.+ + +++.. ...+.++..++++++.+.-.-.-|.-..-.||.|
T Consensus 388 ~~e~ledYR~LfSavFsDyhLF~~l-l-----------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStG 452 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSDYHLFDQL-L-----------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTG 452 (546)
T ss_pred CCCCHHHHHHHHHHHhhhHhhhHhh-h-----------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccc
Confidence 54 45677777777744444332 1 11111 1234567777777776543222222223469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN-VVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||+++-.||+-+.+|+++||=-+-.||.-++.+.+.+-- +++.|+||+.||||-. -|...||++.
T Consensus 453 QkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~ 520 (546)
T COG4615 453 QKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLE 520 (546)
T ss_pred hHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHH
Confidence 99999999999999999999999999999999999876655 4567999999999964 6888898764
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-25 Score=249.19 Aligned_cols=122 Identities=21% Similarity=0.319 Sum_probs=96.2
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHh---cCCC
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELV---ANPS 350 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~---~~p~ 350 (404)
.+...||.|+|.+............++..+.+ +.++.++|.+. .+... ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 34567999999987653321111122333445 47788898765 45553 479999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 351 IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 351 iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||||+|||+.++..+++.|++++++|.|||+++|+++ .+ ..+|+++.+
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L 884 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLEL 884 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEE
Confidence 99999999999999999999999999888999999999997 45 899998753
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-24 Score=210.82 Aligned_cols=172 Identities=23% Similarity=0.329 Sum_probs=137.1
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVI 286 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~ 286 (404)
|+-=.+++..||+++++||||-||||+.++|+|..+|+ +|. .. .-.++|-||--.-....||++-+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 44445677788999999999999999999999998875 465 11 124678888544456789999876
Q ss_pred HHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 015591 287 FSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366 (404)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~ 366 (404)
-....+.. ..-+..++++-|.|+++.+..+. +|||||.|||+||.+|.+++++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 54332211 11234678888899998888864 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 367 AIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 367 ~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
..+.+.|++..++ ++|.+++.||.-. +-=+.|++++|
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF 529 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVF 529 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEE
Confidence 9999999999864 8999999999863 34467888876
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=218.75 Aligned_cols=189 Identities=21% Similarity=0.245 Sum_probs=141.6
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..+.++|++|.|+. +..++++++|-+..++-+|+|||||||||||||++.|...|. .|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~--~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT--IGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc--cccccccccc
Confidence 35778888886632 236899999999999999999999999999999999988764 5887654332
Q ss_pred CchhhhcceeEEeecC--CCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCH
Q 015591 257 KVQETFARVSGYCEQT--DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~--~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSg 333 (404)
. +++..|. +.+.-..++.|++.=.. ......+.+..++.++||.. ..+.++ ++||+
T Consensus 454 ~--------~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~ 512 (614)
T KOG0927|consen 454 K--------LPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQLSD 512 (614)
T ss_pred c--------chhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhccc
Confidence 1 2233332 23333456667664221 11234567889999999984 444443 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+||.+|+.++..|.+|+|||||+|||..+...+-++|.+. .-+||++|||.. -|-+..+++.+|
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c 579 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVC 579 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhh
Confidence 9999999999999999999999999999999998888888753 468999999976 366666665543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=208.88 Aligned_cols=209 Identities=19% Similarity=0.355 Sum_probs=171.3
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...++++||+..-. .....+++|||+++.||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|+
T Consensus 255 ~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~--~G~I~l~G~ 320 (501)
T COG3845 255 EVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA--SGRILLNGK 320 (501)
T ss_pred CeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC--CceEEECCE
Confidence 34588888886421 1245799999999999999999999999999999999988664 499999999
Q ss_pred cC----chh-hhcceeEEeecCC---CCCCCCCHHHHHHHHhhhhc----CccCChhhHHHHHHHHHHHcCCCC-Ccccc
Q 015591 256 PK----VQE-TFARVSGYCEQTD---IHSPQITVEESVIFSAWLRL----APEINSKTKAEFVNEVLETIELDG-IKDSL 322 (404)
Q Consensus 256 ~~----~~~-~~~~~~g~v~Q~~---~~~~~~Tv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 322 (404)
+. ... ..+..++|||.+. .+.+.+|+.||+.+....+. ..-+......+.+.++++.++... ..+..
T Consensus 321 ~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~ 400 (501)
T COG3845 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP 400 (501)
T ss_pred eccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc
Confidence 85 222 2345789999864 35688999999998754321 112344556778899999988863 22333
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
...||||++||+-+||+|..+|++|++.+||-|||..+.+.|.+.|.+.+++|+.|++++-+++ |+++++|++.
T Consensus 401 -----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIa 474 (501)
T COG3845 401 -----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIA 474 (501)
T ss_pred -----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheee
Confidence 3479999999999999999999999999999999999999999999999989999999999997 8999999987
Q ss_pred cC
Q 015591 403 QF 404 (404)
Q Consensus 403 ~~ 404 (404)
++
T Consensus 475 Vi 476 (501)
T COG3845 475 VI 476 (501)
T ss_pred ee
Confidence 64
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-24 Score=195.82 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=113.4
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE--ECCcc----CchhhhcceeEEeecCCCCCCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK--IGGYP----KVQETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~--i~G~~----~~~~~~~~~~g~v~Q~~~~~~~~ 279 (404)
-++++++++.+| +++|+||||||||||+..|.-... |+.. ..|.. +........+.+++|.....+
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC--
Confidence 346788888888 889999999999999999874221 1111 11211 001112345677777544333
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHH----hcCCCEEEEe
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL----VANPSIIFMD 355 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL----~~~p~iLlLD 355 (404)
| .. .....+.++++++. .+..++.+ +.||+|||||++||+++ +.+|++++||
T Consensus 83 ----~-----------~~-~~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 83 ----N-----------PL-CVLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ----C-----------cC-CHHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 1 00 11123456666664 44445543 47999999999999999 5899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC---CCeEEEEecCCCHHHHHhcccccc
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDT---GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~---g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+|||+.++..+.+.|+++.++ ++|||+++|+++ ++.. +|++-+
T Consensus 139 EP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~ 187 (198)
T cd03276 139 EFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKV 187 (198)
T ss_pred CcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeE
Confidence 999999999999999999997643 368999999997 4544 587754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=227.58 Aligned_cols=109 Identities=27% Similarity=0.347 Sum_probs=89.5
Q ss_pred CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEE
Q 015591 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANP---SIIFM 354 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p---~iLlL 354 (404)
+|+.|++.|...+. . .....+.++.++|... .+... ..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78888888864321 1 1224577888898752 44443 479999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||+|||+..+..+++.|+++.++|.|||+++|+++ .+ ..+|+++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~ 904 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIID 904 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEE
Confidence 9999999999999999999999878999999999986 34 67999875
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-24 Score=204.53 Aligned_cols=179 Identities=13% Similarity=0.169 Sum_probs=114.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc-C-chh------hhcceeEEee--cCCCC-CCCCCHHH
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-K-VQE------TFARVSGYCE--QTDIH-SPQITVEE 283 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~-~-~~~------~~~~~~g~v~--Q~~~~-~~~~Tv~e 283 (404)
.++ +++|+||||||||||+++|++...+. .|++..++.. . ... .....+..++ |++.. ....++++
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~--~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEK--SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCC--cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 344 99999999999999999999865432 3555443321 0 000 0112233333 32111 11111111
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccc----------ccC-C------CCCCCCHHHHHHHHHHHHHh
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL----------VGI-P------GVNGLSTEQRKRLTIAVELV 346 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~----------vg~-~------~~~~LSgGqrqRl~IAraL~ 346 (404)
... ..+... .....+.++++++.+++....... ... | .+..||+|||||++||++++
T Consensus 98 ~~~---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~ 171 (247)
T cd03275 98 GSS---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFA 171 (247)
T ss_pred Cce---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHH
Confidence 100 001010 111234456888888885321111 000 1 12579999999999999998
Q ss_pred cC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 347 AN----PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 347 ~~----p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+ |+++||||||+|||+..+..+.+.|++++++|.|+|++||++ ++.+.+|+++.+
T Consensus 172 ~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~ 231 (247)
T cd03275 172 IHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGV 231 (247)
T ss_pred HhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEE
Confidence 64 899999999999999999999999999986699999999995 567899998753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=211.88 Aligned_cols=196 Identities=20% Similarity=0.250 Sum_probs=150.0
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..+++++|+..-+. .+..+.+|+||+|++|+-+.|.||||||||+|+++|+|+.+.. +|.+.--...
T Consensus 432 n~i~~e~v~l~tPt-----------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~--~G~l~k~~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT-----------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST--GGKLTKPTDG 498 (659)
T ss_pred ceEEeeeeeecCCC-----------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC--CCeEEecccC
Confidence 46999999986432 1345889999999999999999999999999999999998753 5888654322
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC------CCCC
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP------GVNG 330 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~------~~~~ 330 (404)
.. +.+-|+||.|. ++-.|.||.+.|+..--.. ..+....+.+.+.++.++|.++.+..-|.. ....
T Consensus 499 ~~-----~~lfflPQrPY-mt~GTLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 GP-----KDLFFLPQRPY-MTLGTLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred CC-----CceEEecCCCC-ccccchhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 11 34679999776 4566999999997322111 112233456777788777776554433321 2345
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHH
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE 396 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~ 396 (404)
||+||+||++.||-+.++|++-||||.||++|...+..+.+.+++ .|.|.|-|.|+.+..-|+
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSLWKFH 633 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHHHhhh
Confidence 999999999999999999999999999999999999999988874 599999999999854443
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-23 Score=206.57 Aligned_cols=202 Identities=22% Similarity=0.270 Sum_probs=127.5
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...+.+.++++.+ .+..+++|++|++.+|+-++|+|+|||||||+|++|+|...|-+.+=.++.-.+
T Consensus 73 s~dvk~~sls~s~-------------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~ 139 (614)
T KOG0927|consen 73 SRDVKIESLSLSF-------------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139 (614)
T ss_pred cccceeeeeeecc-------------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcc
Confidence 3457778877755 457899999999999999999999999999999999998776553333333222
Q ss_pred cCchh---hhcce----------eEEeecCCCCC-CCCCHHHHHHH-HhhhhcCccCChhhHHHHHHHHHHHcCCC-CCc
Q 015591 256 PKVQE---TFARV----------SGYCEQTDIHS-PQITVEESVIF-SAWLRLAPEINSKTKAEFVNEVLETIELD-GIK 319 (404)
Q Consensus 256 ~~~~~---~~~~~----------~g~v~Q~~~~~-~~~Tv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~ 319 (404)
+.... ..+.. ..|...+-... +. .+.-.+ ....|. .+........++-+++..++.. +..
T Consensus 140 e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~---~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 140 EIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDD---KEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred cCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc---hhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 21110 00000 00000000000 00 000000 000111 1112222233445555555543 445
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcc
Q 015591 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD 399 (404)
Q Consensus 320 ~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd 399 (404)
++.+ .+||||||.|+++||+|..+|++|+|||||++||..+..-+-+.|.+.. ++ ++++++|.-. -+-..|.
T Consensus 216 ~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d-~~-~lVi~sh~QD-fln~vCT 287 (614)
T KOG0927|consen 216 DKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD-RI-ILVIVSHSQD-FLNGVCT 287 (614)
T ss_pred HHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc-Cc-eEEEEecchh-hhhhHhh
Confidence 5553 5799999999999999999999999999999999999998888887643 22 8999999765 3555666
Q ss_pred ccc
Q 015591 400 EVK 402 (404)
Q Consensus 400 ~~l 402 (404)
+|+
T Consensus 288 ~Ii 290 (614)
T KOG0927|consen 288 NII 290 (614)
T ss_pred hhh
Confidence 654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=218.22 Aligned_cols=110 Identities=26% Similarity=0.334 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhc---CCCEEE
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVA---NPSIIF 353 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~---~p~iLl 353 (404)
.+||.|++.|...+. . .....++++.++|... .++.+ ..|||||+||+.||++|+. +|+++|
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777754321 1 1134577888888642 34443 4799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 354 MDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 354 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..+|+++.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~ 902 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIID 902 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEE
Confidence 99999999999999999999999878999999999996 34 67999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-23 Score=184.70 Aligned_cols=198 Identities=18% Similarity=0.242 Sum_probs=148.0
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceeeEEEECCccC---chhhhc----ceeEEeecC
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTG--SMEGEIKIGGYPK---VQETFA----RVSGYCEQT 272 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~~~---~~~~~~----~~~g~v~Q~ 272 (404)
+...++++||+++..||+-+|+|+||||||-..|+|.|..+.. .+.-..++++.++ ..+..| +.+++++|+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 4567999999999999999999999999999999999964321 0112345555542 223333 346788997
Q ss_pred CC--CCCCCCHHHHHHHHhhhhcCcc---CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 273 DI--HSPQITVEESVIFSAWLRLAPE---INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 273 ~~--~~~~~Tv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
+. +.|+-+|...+.-......... ..-.-+++++-+++..+|+.+..|-.-.+| .+|.-||-|+|.||.|++.
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP--~ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP--YELTEGECQKVMIAIALAN 175 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc--chhccCcceeeeeehhhcc
Confidence 64 3455555544432211111000 011124566778999999998888776665 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+|++||.||||+++|+.++.+|.++|.++.+ +|.||++++||+. .+-+-+|++=
T Consensus 176 qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~ 230 (330)
T COG4170 176 QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKIN 230 (330)
T ss_pred CCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheE
Confidence 9999999999999999999999999999975 4899999999996 5888888763
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=203.21 Aligned_cols=176 Identities=22% Similarity=0.236 Sum_probs=119.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
.+|+..+.+..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |.|..-.
T Consensus 79 ~Di~~~~fdLa~-------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v~~f~-- 135 (582)
T KOG0062|consen 79 KDIHIDNFDLAY-------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQVSGFH-- 135 (582)
T ss_pred cceeeeeeeeee-------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCcCccC--
Confidence 356666666554 56789999999999999999999999999999999985 3332222
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChh-hHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSK-TKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgG 334 (404)
.. +..+ ..+++-....+...+.+..+... ..++... +..+...+++.-+|+.+- .... .++||||
T Consensus 136 ve-qE~~--g~~t~~~~~~l~~D~~~~dfl~~-----e~~l~~~~~l~ei~~~~L~glGFt~emq~~p-----t~slSGG 202 (582)
T KOG0062|consen 136 VE-QEVR--GDDTEALQSVLESDTERLDFLAE-----EKELLAGLTLEEIYDKILAGLGFTPEMQLQP-----TKSLSGG 202 (582)
T ss_pred ch-hhee--ccchHHHhhhhhccHHHHHHHHh-----hhhhhccchHHHHHHHHHHhCCCCHHHHhcc-----ccccCcc
Confidence 11 1111 11222211112222333333221 1111111 233344447888888643 2232 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.|-|+++||||..+|+||+|||||+.||..+..-+-+.|+.. +.|+|+|+||-+
T Consensus 203 WrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~ 256 (582)
T KOG0062|consen 203 WRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRN 256 (582)
T ss_pred hhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHH
Confidence 999999999999999999999999999999988888888753 489999999965
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-22 Score=193.97 Aligned_cols=176 Identities=20% Similarity=0.309 Sum_probs=136.6
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..+-+.||+|.|+ +.++++++++|-|.--..+|||||||.||||||++|.|.+.|. .|+.+-|
T Consensus 585 PvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~--~GE~RKn--- 647 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN--DGELRKN--- 647 (807)
T ss_pred CeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC--cchhhcc---
Confidence 3466777777653 4578999999999999999999999999999999999988774 4765432
Q ss_pred CchhhhcceeEEeecCC--CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 257 KVQETFARVSGYCEQTD--IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~--~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
.+-++|+..|+. .+-..-|.-|.|.-... ++ .+.+...+-.+||...++++- ...||||
T Consensus 648 -----hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lp----yq~ARK~LG~fGL~sHAHTik----ikdLSGG 708 (807)
T KOG0066|consen 648 -----HRLRIGWFDQHANEALNGEETPVEYLQRKFN------LP----YQEARKQLGTFGLASHAHTIK----IKDLSGG 708 (807)
T ss_pred -----ceeeeechhhhhHHhhccccCHHHHHHHhcC------CC----hHHHHHHhhhhhhhhccceEe----eeecCCc
Confidence 234678877753 33344566666643211 11 233456788889988888763 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
||-||++|---+..|+||||||||++||.++...+.++|++. .-.||+++||-.
T Consensus 709 QKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR 762 (807)
T KOG0066|consen 709 QKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER 762 (807)
T ss_pred chHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc
Confidence 999999999999999999999999999999999998888765 458999999865
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=169.34 Aligned_cols=182 Identities=25% Similarity=0.409 Sum_probs=134.1
Q ss_pred CcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 176 PLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 176 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...|+++++.|.|+. ..+++-|+|+.++.|....++|.||||||||||+|+|-.-.+. |.|.++|.
T Consensus 11 ~~aievsgl~f~y~~------------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~--~~v~Vlgr 76 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV------------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG--GVVQVLGR 76 (291)
T ss_pred cceEEEeccEEeccc------------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC--CeEEEcCc
Confidence 346999999998853 2479999999999999999999999999999999999655443 89999997
Q ss_pred cCch--------------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccc
Q 015591 256 PKVQ--------------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321 (404)
Q Consensus 256 ~~~~--------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 321 (404)
+.-. .++.+..++-.. -.+....++.+ +.|+.. .... ++-+++++.++++-..
T Consensus 77 saFhDt~l~~Sgdl~YLGgeW~~~~~~age-vplq~D~sae~-mifgV~-----g~dp----~Rre~LI~iLDIdl~W-- 143 (291)
T KOG2355|consen 77 SAFHDTSLESSGDLSYLGGEWSKTVGIAGE-VPLQGDISAEH-MIFGVG-----GDDP----ERREKLIDILDIDLRW-- 143 (291)
T ss_pred CccccccccccCceeEeccccccccccccc-ccccccccHHH-HHhhcc-----CCCh----hHhhhhhhheeccceE--
Confidence 5321 122222222221 11222345543 444421 1111 3345677776664221
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q 015591 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQ 389 (404)
Q Consensus 322 ~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~ 389 (404)
. .+.+|-|||+||.|++.|++.-++|+|||-|--||..++..+++.+++-++ +|.||+..||-
T Consensus 144 R-----mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHI 207 (291)
T KOG2355|consen 144 R-----MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHI 207 (291)
T ss_pred E-----EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeee
Confidence 1 246999999999999999999999999999999999999999999999886 49999999995
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-20 Score=169.33 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||++|||+++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|++||+++ ....+|+++.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~ 169 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIG 169 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEE
Confidence 9999999999999996 699999999999999999999999999998767899999999975 5678999875
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=184.36 Aligned_cols=167 Identities=25% Similarity=0.371 Sum_probs=124.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC------CCceeeEEEECCccCchhhhcceeEEeecC-CCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT------TGSMEGEIKIGGYPKVQETFARVSGYCEQT-DIH 275 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~------~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~-~~~ 275 (404)
...+|+|||++++||++++|+|+|||||||||++|+|... +.+++|.|.+--.. ..+.++.. +.-
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~ 466 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccc
Confidence 4679999999999999999999999999999999999421 22346777653211 12233332 222
Q ss_pred CCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 015591 276 SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLD 355 (404)
+..-|+.|.+.- . ..+...+.+++...|+.+- ..-....+.||.|||.|..||.++..+|.+++.|
T Consensus 467 f~~~tilehl~s------~-----tGD~~~AveILnraGlsDA---vlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRS------K-----TGDLNAAVEILNRAGLSDA---VLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhh------c-----cCchhHHHHHHHhhccchh---hhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 334566665532 0 1112335678888888642 2111224579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~ 391 (404)
|-.|.||+.++..+.+-|.+++++ |.|++++||+|+
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 999999999999999999999865 999999999986
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-21 Score=188.20 Aligned_cols=157 Identities=26% Similarity=0.378 Sum_probs=116.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh---h---------hcc------eeEEeecCCCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE---T---------FAR------VSGYCEQTDIH 275 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~---------~~~------~~g~v~Q~~~~ 275 (404)
.++|++++|+|+||-||||-+|+|+|...|.- |+ .++.|-..+ . |++ ++..-+|--.+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL--G~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL--GR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC--CC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 47899999999999999999999999776642 43 223221110 0 110 01111221111
Q ss_pred C---CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 015591 276 S---PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 352 (404)
Q Consensus 276 ~---~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iL 352 (404)
. ...+|.|-|.-. ...-..+++++.++|.+..|+-+. +|||||-||++||.+++++++++
T Consensus 173 iPk~~KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 173 IPKVVKGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHHhcchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEE
Confidence 1 123666654321 112346889999999999988764 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 353 FMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 353 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
++|||||-||...+..+.+.+++|++.+++||++.||+.
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa 274 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA 274 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence 999999999999999999999999977999999999985
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-21 Score=175.17 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=98.5
Q ss_pred eeeeeeeeeeCCc-EEEEEcCCCCcHHHHHHHHh--------CCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCC
Q 015591 206 LLYDVTGSLRPGV-LTALMGVSGAGKTTLLDVLA--------GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS 276 (404)
Q Consensus 206 iL~~vs~~i~~Ge-~~alvG~sGaGKSTLl~~L~--------g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~ 276 (404)
-.-++|+++.+|+ +++|+|||||||||||+.|+ |...|.. . ...++|+.|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~--~--------------~~~~~~~~~~~~-- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA--E--------------GSSLPVFENIFA-- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc--c--------------cccCcCccEEEE--
Confidence 3457999999995 89999999999999999998 3222110 0 001233333100
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDE 356 (404)
.++..+..+.. ...+|+||||++.|+++ +.+|+++++||
T Consensus 78 -----------------------------------~lg~~~~l~~~-----~s~fs~g~~~~~~i~~~-~~~p~llllDE 116 (200)
T cd03280 78 -----------------------------------DIGDEQSIEQS-----LSTFSSHMKNIARILQH-ADPDSLVLLDE 116 (200)
T ss_pred -----------------------------------ecCchhhhhcC-----cchHHHHHHHHHHHHHh-CCCCcEEEEcC
Confidence 00111111111 23699999999999988 58999999999
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 357 PTTGLDARAAAIIM-RAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 357 PtsgLD~~~~~~i~-~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||+..+..+. ..++++.+.|.|+|++||+. ++...+|+++.
T Consensus 117 p~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~ 162 (200)
T cd03280 117 LGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREG 162 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCC
Confidence 99999999999996 46788776799999999984 67889998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=174.47 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CeEEEEecCCCHHHHHhcccc
Q 015591 329 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-G-RTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL----~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tii~~tH~~~~~i~~~fd~~ 401 (404)
..||+|||||+.+|+++ +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||++. ++.+.+|++
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~ 202 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKM 202 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCce
Confidence 47999999998877554 5899999999999999999999999999998765 5 58999999986 455666643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-21 Score=191.06 Aligned_cols=174 Identities=22% Similarity=0.320 Sum_probs=128.6
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
...+...++|.+++|..+.|+||||||||+|.++|+|+.+. ..|...+ | ....+-|+||.+..- ..|.|
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv--y~g~L~~---P-----~~~~mFYIPQRPYms-~gtlR 562 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV--YNGLLSI---P-----RPNNIFYIPQRPYMS-GGTLR 562 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc--cCCeeec---C-----CCcceEeccCCCccC-cCccc
Confidence 35588999999999999999999999999999999998764 2354432 1 123478999987765 67899
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCC----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP----GVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~----~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
|.+.++...-... .+.-.++..+.+++.+.|+++...-.|.. ...-||||||||+.+||.+.++|+.-+|||-|
T Consensus 563 DQIIYPdS~e~~~--~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 563 DQIIYPDSSEQMK--RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ceeecCCcHHHHH--hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 9988753211100 00111234455666655554443332221 11249999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCH
Q 015591 359 TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392 (404)
Q Consensus 359 sgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~ 392 (404)
|+..+.-+..+.+..++ .|.+.|-+||+|+.
T Consensus 641 sAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred cccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999999888887763 59999999999984
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-21 Score=175.99 Aligned_cols=135 Identities=15% Similarity=0.159 Sum_probs=99.5
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .+++|.+.+++.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchh
Confidence 45788887765 79999999999999999999987432 11234433211 25667777889999999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
|+.++... . ....+++.++++.+++ .+|+++|+||||+|+|+
T Consensus 79 ~l~~~~s~------~-~~e~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGISY------F-YAELRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccCh------H-HHHHHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 99875311 1 1122445666664431 68999999999999999
Q ss_pred HHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q 015591 364 RAAAIIMR-AVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 364 ~~~~~i~~-~l~~l~~~g~tii~~tH~~~ 391 (404)
.....+.. .++++.+.|.|+|++||+++
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 99987754 67888767999999999986
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-20 Score=185.59 Aligned_cols=192 Identities=21% Similarity=0.247 Sum_probs=143.3
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
++..+++.+|+|.|++ +..+++.++++.++.-+..+++|+||+||||+++++.|-..| .+|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc
Confidence 4456899999987753 222689999999999999999999999999999999996664 347765543
Q ss_pred ccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCH
Q 015591 255 YPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLST 333 (404)
Q Consensus 255 ~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSg 333 (404)
|.+++|..|...-+..+.|-+--.+ ...+ +.. ..+.+++-+..+|+.. ++... ..+|||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~vd~~-~~~~--pG~----~~ee~r~hl~~~Gl~g~la~~s-----i~~LSG 485 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNAVDFM-EKSF--PGK----TEEEIRRHLGSFGLSGELALQS-----IASLSG 485 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHHHHHH-HHhC--CCC----CHHHHHHHHHhcCCCchhhhcc-----ccccCC
Confidence 4568898886554444444332222 1111 111 2344567788899974 23222 347999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||-||++|.....+|-+|+|||||+.||..+-..+.+.|+.. +-.||+|||+.+ =+-..|+++-+
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wv 551 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWV 551 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEE
Confidence 9999999999999999999999999999999998888888764 468999999976 36667877644
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=173.90 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||+|||||+++|++++. +|++++|||||++||+..+..+++.|+++. .+.|+|++||++. +.+.+|+++.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~~--~~~~~d~~~~ 244 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCITHLPQ--VAAMADNHFL 244 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEechHH--HHHhcCcEEE
Confidence 499999999999997654 999999999999999999999999999986 4799999999985 5678998764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-19 Score=158.22 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||+++ +.+.+|+++.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~ 152 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIH 152 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEE
Confidence 499999999999999987 78999999999999999999999999987655899999999985 5677898764
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-19 Score=166.41 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=101.5
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeE-EeecCCCCCCCCCHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSG-YCEQTDIHSPQITVE 282 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g-~v~Q~~~~~~~~Tv~ 282 (404)
..+.+|++++.++|++++|.||||+|||||++.++-. .+...+| ||+.....++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe-----
Confidence 4589999999999999999999999999999999721 1111222 4444221111
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEP--- 357 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL--~~~p~iLlLDEP--- 357 (404)
.+++++..+++.+.. .+++|.|++|++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123344445554322 136999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccc
Q 015591 358 TTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 358 tsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|++||+.+.... .++.+.+ .|.++|++||+ .++.+.+|++.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~ 163 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVP 163 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCC
Confidence 999999887543 3344443 48999999996 47888888764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=189.89 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEE
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN---PSIIFM 354 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~---p~iLlL 354 (404)
.|||.|.+.|... ..+....-+.++.+||..+ ..|.+- ..|||||.||+-||..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl---~LGq~~-~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYL---PLGQNL-SSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCee---eCCCcC-CccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 4688888777521 1223444567777888643 345553 46999999999999999976 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
||||.||++...+.+++.|++|.+.|.|||+|.|++ ++.+.+|.++
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~ii 1772 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLI 1772 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEE
Confidence 999999999999999999999999999999999997 5788899886
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-18 Score=157.29 Aligned_cols=137 Identities=13% Similarity=0.193 Sum_probs=97.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
+..+.+|+++++++|++++|+||||+||||+++++++..- +.+.-.+| +.....+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccCh
Confidence 3568999999999999999999999999999999987421 11111123 2233445666
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD 362 (404)
|++... ++..+..+.. .+.+|.|++|+ ..+.+++.+|++++||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~~-----~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMERN-----LSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccchh-----hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 666321 1222111111 23699999975 56667889999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhCCCeEEEEecCCC
Q 015591 363 ARAAAIIM-RAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 363 ~~~~~~i~-~~l~~l~~~g~tii~~tH~~~ 391 (404)
+.....+. ..++.+.+.|.++|++||+.+
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 97766654 567777777999999999875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=171.91 Aligned_cols=110 Identities=27% Similarity=0.404 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEE
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP---SIIFM 354 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p---~iLlL 354 (404)
.|||.|...|.... .+..+.-+.+..+||.- -..|.| ...|||||.||+-+|.+|.++. .++||
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgY---i~LGQp-atTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGY---IKLGQP-ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcce---EecCCc-cccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 37888888876421 11222234455567753 235665 3579999999999999999988 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
||||+||.....+++++.|.+|.+.|-|||+|.|++ ++...+|.++
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~II 895 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWII 895 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEE
Confidence 999999999999999999999999999999999998 4788888876
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-18 Score=180.33 Aligned_cols=118 Identities=25% Similarity=0.421 Sum_probs=104.7
Q ss_pred CceeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCCc-cccCCC--C-
Q 015591 1 MFRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPRW-QKMLPT--N- 76 (404)
Q Consensus 1 ~fr~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~~-~~~~~~--~- 76 (404)
+++++++++|+...|+.+++++++++++|+||++|.++||+||+|++|+||+.|||+|++.|||.+..+ +|...+ .
T Consensus 489 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~ 568 (617)
T TIGR00955 489 FGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGP 568 (617)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCC
Confidence 357899999999999999999999999999999999999999999999999999999999999999886 675321 1
Q ss_pred -cchhhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 015591 77 -TTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTF 120 (404)
Q Consensus 77 -~~~G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 120 (404)
...|+++++.+|++. .++|.++++++++.++|.++.++++.+
T Consensus 569 c~~~g~~~l~~~g~~~--~~~~~~~~il~~~~~~~~~l~~~~L~~ 611 (617)
T TIGR00955 569 CPSSGEVILETLSFRN--ADLYLDLIGLVILIFFFRLLAYFALRI 611 (617)
T ss_pred CCcChHHHHHhcCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 236899999999866 466999999999999999998888876
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.7e-18 Score=155.00 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
.++.+++| +..+.+++.+|+++|+||||+|+|+.....+.. .++.+.+.+.++|++||++ ++...+|++
T Consensus 91 ~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~ 160 (202)
T cd03243 91 TFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQV 160 (202)
T ss_pred eHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcC
Confidence 46766665 666678889999999999999999998888765 5666666789999999986 566677643
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-17 Score=163.11 Aligned_cols=189 Identities=19% Similarity=0.234 Sum_probs=125.9
Q ss_pred cccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-----------hhh---
Q 015591 197 RGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-----------ETF--- 262 (404)
Q Consensus 197 ~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----------~~~--- 262 (404)
...+..++.++.|.|+.|-.|..++||||||-||||||+.|+.+...-+..=++++..+.+.. ...
T Consensus 270 F~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl 349 (807)
T KOG0066|consen 270 FDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRL 349 (807)
T ss_pred eeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHH
Confidence 333445677999999999999999999999999999999999863211112345444432100 000
Q ss_pred ------cceeEEeecCCCCCCCCCHHHHHHHH-hhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHH
Q 015591 263 ------ARVSGYCEQTDIHSPQITVEESVIFS-AWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTE 334 (404)
Q Consensus 263 ------~~~~g~v~Q~~~~~~~~Tv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgG 334 (404)
++..+-+.+ ...|+.|-+.-. ..+|.. ......+++.+++.-+|+..- .+++ ...+|||
T Consensus 350 ~lLeee~~L~~q~e~-----Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFskEMQ~rP-----t~kFSGG 416 (807)
T KOG0066|consen 350 ALLEEEAKLMSQIEE-----GDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSKEMQERP-----TTKFSGG 416 (807)
T ss_pred HHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCChhHhcCC-----ccccCCc
Confidence 111111111 234666655432 223321 112234567788888887642 3333 3469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
.|-||++||||...|-+|.|||||+.||-.+..-+-..|+... +|.++++||-.. +-+.|..++
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF-LD~VCtdII 480 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF-LDSVCTDII 480 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch-HHHHHHHHh
Confidence 9999999999999999999999999999988777777776653 799999999873 455565544
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=152.42 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 329 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~---------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
+-+|+||||+++||++|+ .+|++++|||||++||+..+..+.+.++++ +. +++++|+.
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q-~ii~~~~~ 248 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQ-TFVTTTDL 248 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CC-EEEEeCCc
Confidence 348999999999999985 799999999999999999999999998764 34 45555544
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=154.80 Aligned_cols=206 Identities=24% Similarity=0.335 Sum_probs=145.9
Q ss_pred CCCcEEEEeceeEEeecccccc--cccccc-CceeeeeeeeeeeeCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 015591 174 FEPLTVAFQDLKYYIDTPLEMR--ERGFTE-KKLRLLYDVTGSLRPG-----VLTALMGVSGAGKTTLLDVLAGRKTTGS 245 (404)
Q Consensus 174 ~~~~~i~~~~l~~~~~~~~~~~--~~~~~~-~~~~iL~~vs~~i~~G-----e~~alvG~sGaGKSTLl~~L~g~~~~~~ 245 (404)
.++..++.++++|.+......+ --.|.+ +.+..+.+..+.|+.| |++..+|+||.||||++++++|+.+|+.
T Consensus 316 ten~rfR~~~l~f~~~~~~~~ek~~~~y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~ 395 (592)
T KOG0063|consen 316 TENLRFRPECLVFLASDLSSEDRRTGRYSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE 395 (592)
T ss_pred cccccccchhheeeeccccchhhhhheeccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc
Confidence 3444556666666553321110 001222 2345677888888877 5779999999999999999999888753
Q ss_pred eeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccC
Q 015591 246 MEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325 (404)
Q Consensus 246 ~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~ 325 (404)
.|+|-. -.++|=+|.-.--...|||+-+.--. |. .-.....+.++++-|.+++..|..+
T Consensus 396 -~~e~p~-----------lnVSykpqkispK~~~tvR~ll~~kI--r~-----ay~~pqF~~dvmkpL~ie~i~dqev-- 454 (592)
T KOG0063|consen 396 -GGEIPV-----------LNVSYKPQKISPKREGTVRQLLHTKI--RD-----AYMHPQFVNDVMKPLQIENIIDQEV-- 454 (592)
T ss_pred -cCcccc-----------cceeccccccCccccchHHHHHHHHh--Hh-----hhcCHHHHHhhhhhhhHHHHHhHHh--
Confidence 344321 13567677544445678888664321 11 0112356778888888888888775
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
.+|||||.||+++|.+|-+.+++.+.|||.+-||++.+...-+.+++.. +..+|-.++.||.-.+.+ +.|++++|
T Consensus 455 ---q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTY-ladrvivf 530 (592)
T KOG0063|consen 455 ---QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATY-LADRVIVF 530 (592)
T ss_pred ---hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHh-hcceeEEE
Confidence 4799999999999999999999999999999999999998888888864 568999999999754444 57888764
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-16 Score=172.51 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=92.9
Q ss_pred CCCCCHHHHHHHHhhhhcCcc---CC---hhhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcC
Q 015591 276 SPQITVEESVIFSAWLRLAPE---IN---SKTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVAN 348 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~~~~---~~---~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~ 348 (404)
+..+||.|.+.|...+...+. +. ..+..++++ .++.+||.+. .|+.+ ..|||||||||.||++|+.+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 457899999998543322110 00 011223343 5777788765 56654 47999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 349 P--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 349 p--~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
| +++||||||+|||+..+..+.+.|++++++|.|||+++|+++ ++ ..+|+++.+
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~L 563 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDI 563 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEe
Confidence 7 899999999999999999999999999878999999999987 34 469998753
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-16 Score=169.47 Aligned_cols=120 Identities=25% Similarity=0.377 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHhhhhcCccCCh------hhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 277 PQITVEESVIFSAWLRLAPEINS------KTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~------~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
-.|||.|.+.|...+........ .+..+++ +.+..++|... .++.+ .+|||||+||+.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 36889998888755422110000 0111122 23555677544 35443 479999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 350 --SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 350 --~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+++||||||+|||+.....+++.|++++++|.|||+|+|+++ .+ ..+|+++.+
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~L 561 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDI 561 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEe
Confidence 899999999999999999999999999888999999999986 34 589998753
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-16 Score=142.89 Aligned_cols=139 Identities=16% Similarity=0.096 Sum_probs=90.0
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
..+.+|+++..++ ++++|+|||||||||||+.+++.... |. .|.... ..+..++++.| .++.+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp--~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVP--ASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeec--cccceecceee---EeccCCchh
Confidence 4589999999987 99999999999999999999874322 11 122221 11234566654 345556655
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH--HHHHHHHHHHHhcCCCEEEEeCC---C
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEP---T 358 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG--qrqRl~IAraL~~~p~iLlLDEP---t 358 (404)
++..+ .|.= +.++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 55432 1111 22233333334579999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 359 TGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 359 sgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+++|.... ....++.+.+. +.++|++||+. ++.+..|++
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~ 162 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKL 162 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcC
Confidence 88887652 23344555555 89999999995 566666654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-15 Score=160.40 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=90.8
Q ss_pred ceeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCC-----ccccCCC-
Q 015591 2 FRFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPR-----WQKMLPT- 75 (404)
Q Consensus 2 fr~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~-----~~~~~~~- 75 (404)
+++++|++||+..|+.++++++.++++|+||+|+ +||+||+|++|+||+.|||||++.|||.+.+ ++|..+.
T Consensus 536 g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~ 613 (659)
T PLN03211 536 GLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHG 613 (659)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCccc
Confidence 5689999999999999999999999999999997 7999999999999999999999999997643 4675421
Q ss_pred CcchhhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 015591 76 NTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFL 121 (404)
Q Consensus 76 ~~~~G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 121 (404)
....+-.++....+. ....|.++++++++.+++-++.++++...
T Consensus 614 ~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 614 SDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred CCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011111122222222 23578999999999999988888777643
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-15 Score=136.35 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCeEEEEecCCCHHHHHhccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM-RAVKNVVDT-GRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~ 400 (404)
+.+|+|++|...+.+ .+.+|+++|+|||++|+|+.....+. ..++.+.++ +.++|++||++ ++...+|+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhc
Confidence 358888776433332 23499999999999999999877765 556777664 89999999997 46666663
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=139.38 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=78.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL 293 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~ 293 (404)
.-++|+||||||||||+++|+|...++ +|+|.++|+++.. ..+...+++++|.+ ....++|.||..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch-------
Confidence 578999999999999999999998875 5999999987531 23444556777744 234444444311
Q ss_pred CccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 015591 294 APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV 373 (404)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l 373 (404)
+. + | ..+..+..+|+++++|||++ .+.+...+
T Consensus 182 --------k~---~--------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 --------KA---E--------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred --------HH---H--------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 0 0 12223336999999999974 33345555
Q ss_pred HHHHhCCCeEEEEecCCCH
Q 015591 374 KNVVDTGRTIVCTIHQPSI 392 (404)
Q Consensus 374 ~~l~~~g~tii~~tH~~~~ 392 (404)
+.+. +|.|+|+++|+++.
T Consensus 214 ~~~~-~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 214 EALH-AGVSIIATAHGRDV 231 (270)
T ss_pred HHHh-CCCEEEEEechhHH
Confidence 5543 69999999998764
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-15 Score=138.63 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 330 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
.||||||.+++||--|+ .++++++||||.++||...+..+.+.|+++.+ +.-+|++||++ ++++.+|+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~--~~~~~a~~~~ 209 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNP--EMFEDADKLI 209 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-H--HHHTT-SEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc--cccccccccc
Confidence 49999999999997653 56789999999999999999999999999864 57899999996 5788888764
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-14 Score=157.49 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=91.8
Q ss_pred eeeeeeCC-cEEEEEcCCCCcHHHHHHHHhCC-CCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHH
Q 015591 210 VTGSLRPG-VLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIF 287 (404)
Q Consensus 210 vs~~i~~G-e~~alvG~sGaGKSTLl~~L~g~-~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~ 287 (404)
+|+.+.++ ++++|.||||+||||||++|+|. ..+ ..| .+|+..... .+.+.+.+..
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a--q~G------------------~~Vpa~~~~--~~~~~d~i~~ 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF--QSG------------------IPIPANEHS--EIPYFEEIFA 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH--HhC------------------CCccCCccc--cccchhheee
Confidence 68888877 89999999999999999999985 111 112 123322110 0011111100
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~ 367 (404)
.+... +.+.+ . .+.+|+|++++..|++++ .+|+++|||||++|+|+....
T Consensus 372 --------~i~~~------~si~~---------~------LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 372 --------DIGDE------QSIEQ---------N------LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --------ecChH------hHHhh---------h------hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00000 01111 1 236999999999998876 789999999999999999999
Q ss_pred HH-HHHHHHHHhCCCeEEEEecCCCHHHHH
Q 015591 368 II-MRAVKNVVDTGRTIVCTIHQPSIDIFE 396 (404)
Q Consensus 368 ~i-~~~l~~l~~~g~tii~~tH~~~~~i~~ 396 (404)
.+ ...++.+.+.|.++|++||+.+...+.
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~eL~~~~ 451 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKELKALM 451 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 98 567788877799999999998654443
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=129.06 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=85.8
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCceeeEEEECCccCchhhhcceeEEeecCCCCCC-CCCHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK-TTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSP-QITVEE 283 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~-~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~-~~Tv~e 283 (404)
+-+|+++.=..+.+++|.||||+|||||||.++... .. ..|...... .-.++|..|....+. ..++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la--~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA--HIGSFVPAD--------SATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH--hCCCeeEcC--------CcEEeeeeeeeeeeCCccChhh
Confidence 555666542223799999999999999999998421 01 124433211 123566666322110 011111
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS--TEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS--gGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
++| .-+-||++++++++.+|+++|||||++|+
T Consensus 88 ----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 88 ----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 122 34569999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC---CCeEEEEecCCCH
Q 015591 362 DARAAAII-MRAVKNVVDT---GRTIVCTIHQPSI 392 (404)
Q Consensus 362 D~~~~~~i-~~~l~~l~~~---g~tii~~tH~~~~ 392 (404)
|+.....+ ...++++.+. +.++|++||+++.
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 99765544 5688888654 3589999999863
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-14 Score=119.14 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=61.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---hhhhcceeEEeecCCCCCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---QETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
..+|+++++++++|++++|+||||||||||++++. +|++.++|.+.. ....++.+++++|+ .+..|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhh
Confidence 45899999999999999999999999999999986 388999998753 23455667788775 56779
Q ss_pred HHHHHHHH
Q 015591 281 VEESVIFS 288 (404)
Q Consensus 281 v~e~l~~~ 288 (404)
++|||.+.
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-13 Score=133.68 Aligned_cols=60 Identities=25% Similarity=0.369 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 329 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~---------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
..+|.||+|++.||+.|+ .+|++|+||||+++||+..+..+.+.+.++ +..+++++|++.
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~ 340 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE 340 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh
Confidence 469999999999999886 799999999999999999999999988753 458899999875
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-13 Score=136.18 Aligned_cols=153 Identities=26% Similarity=0.411 Sum_probs=109.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEe----------------------ecC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYC----------------------EQT 272 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v----------------------~Q~ 272 (404)
+||++.+++|-||-||||-+++++|..+|.- |.- .++ ..+...++|. +|.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl--g~~-~~p-----p~w~~il~~frgselq~yftk~le~~lk~~~kpQy 169 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL--GRY-DNP-----PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY 169 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC--CCC-CCC-----cchHHHhhhhhhHHHhhhhhhhccccccCcCChHH
Confidence 6899999999999999999999999877642 321 111 1111111111 110
Q ss_pred CCCCC---CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 273 DIHSP---QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 273 ~~~~~---~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
-.++| ..+|.+.+. ....+...+++++.++|.+..++-+. .|||||-||.+||.+-+.+.
T Consensus 170 vd~ipr~~k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~a 232 (592)
T KOG0063|consen 170 VDQIPRAVKGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKA 232 (592)
T ss_pred HHHHHHHHHHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhc
Confidence 00011 012222221 11122345677888888888877654 69999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCH
Q 015591 350 SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392 (404)
Q Consensus 350 ~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~ 392 (404)
++.++|||.+.||...+.+-...|+.+..-.+=||++.||++.
T Consensus 233 dvyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV 275 (592)
T KOG0063|consen 233 DVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV 275 (592)
T ss_pred ceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH
Confidence 9999999999999999999999999998778999999999973
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-13 Score=128.36 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPT-----TGLDARAAAIIMRAVKNVVD 378 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPt-----sgLD~~~~~~i~~~l~~l~~ 378 (404)
|++++.|||+++.+|+++++|||| ++||+..++.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999864
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=122.70 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=84.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~-~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
..+.+|+++.+++|++++|+||||+||||+++++++. ..+ ..|..... .. -.++|..|- +-.+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la--~~G~~v~a-~~-------~~~~~~~~i---~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA--QIGSFVPA-SS-------ATLSIFDSV---LTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH--hCCCEEEc-Cc-------eEEeccceE---EEEecCc
Confidence 4589999999999999999999999999999999983 222 13543221 11 112232221 0000000
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD 362 (404)
|++. . +.+.++ .|-+|++-...-+.+|+++|||||.+|.|
T Consensus 85 d~~~------------------------------~---------~~StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 85 DSIQ------------------------------H---------GMSTFM-VELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred cccc------------------------------c---------ccchHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 1000 0 001111 22333333334466899999999999988
Q ss_pred HHHHHHH-HHHHHHHHhC-CCeEEEEecCCCH
Q 015591 363 ARAAAII-MRAVKNVVDT-GRTIVCTIHQPSI 392 (404)
Q Consensus 363 ~~~~~~i-~~~l~~l~~~-g~tii~~tH~~~~ 392 (404)
+.....+ ...++.+.+. +.++|++||+++.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l 156 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPSL 156 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHHH
Confidence 7776664 4667777765 8899999999864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-13 Score=130.24 Aligned_cols=177 Identities=18% Similarity=0.153 Sum_probs=99.7
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE---ECCccCchhhhcce---eEEeecCCCCCCCCCH---H
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK---IGGYPKVQETFARV---SGYCEQTDIHSPQITV---E 282 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~---i~G~~~~~~~~~~~---~g~v~Q~~~~~~~~Tv---~ 282 (404)
+.+.+||.++|+||+|+|||||++.|++..........+. +.........+.+. +-++.+.+. .+...+ +
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 4678999999999999999999999998654321112322 22211222222222 222333232 111000 1
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH--------HHHHHHHHHHhcCCCEEEE
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ--------RKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq--------rqRl~IAraL~~~p~iLlL 354 (404)
..+......+.. ... .--.++++- .+....+...+..|. .+|||+ +||+++||++.++++|.+|
T Consensus 90 ~~~~~a~~~~~~-G~~---vll~iDei~---r~a~a~~ev~~~~G~-~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l 161 (249)
T cd01128 90 MVLEKAKRLVEH-GKD---VVILLDSIT---RLARAYNTVVPPSGK-ILSGGVDANALHKPKRFFGAARNIEEGGSLTII 161 (249)
T ss_pred HHHHHHHHHHHC-CCC---EEEEEECHH---HhhhhhhhccccCCC-CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence 111111111100 000 000001111 122233444555443 589999 9999999999999999999
Q ss_pred eCCCCCCCHHHHHH-HHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 355 DEPTTGLDARAAAI-IMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 355 DEPtsgLD~~~~~~-i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+.+|+.+... ++ +.++...+.|.|+++|+++ -...||.+.+
T Consensus 162 --~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~v 205 (249)
T cd01128 162 --ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDI 205 (249)
T ss_pred --eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEE
Confidence 999999766554 54 5555546899999999985 3556776643
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-12 Score=118.38 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 330 GLSTEQRKRLTIAVELVANP---SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p---~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+|.|+||.+.|+..+...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|++||.|.
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 47999999999998888877 899999999999999999999999887755789999999985
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-12 Score=135.65 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVAN----PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~----p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..|||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++. ++++||++||++. +...+|+++.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~--~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQ--VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHH--HHHhcCeEEE
Confidence 36899999999999999985 69999999999999999999999999987 4899999999985 4568998865
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-12 Score=138.79 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~ 391 (404)
+.+|+|++|++.|++++ .+|+++|||||++|+|+.....+.. +++.+.+.|.++|++||+++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e 451 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE 451 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence 46999999999999998 8999999999999999999888864 56777777999999999965
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-12 Score=116.22 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=86.2
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
..+-+|+++..++|++++|.||||+||||+++.+++..-... .| ..+.... ..++++ +..+..+...|
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-~G------~~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-MG------MDVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-cC------CccCccc--cEeccc---cEEEEecCccc
Confidence 468999999999999999999999999999999987421100 01 1111110 111111 11111111111
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
++..+ .+.+. .|-+|++-....+.+|++++||||++|+|+
T Consensus 85 ~~~~~---------------------------------------~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 85 DIMKG---------------------------------------ESTFM-VELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccC---------------------------------------cchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 11100 01111 233333333344578999999999999999
Q ss_pred HHHHHHHHH-HHHHHhC-CCeEEEEecCCCH
Q 015591 364 RAAAIIMRA-VKNVVDT-GRTIVCTIHQPSI 392 (404)
Q Consensus 364 ~~~~~i~~~-l~~l~~~-g~tii~~tH~~~~ 392 (404)
.....+... ++.+.+. +.++|++||+++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 999998887 6777765 8999999999753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-12 Score=132.06 Aligned_cols=71 Identities=15% Similarity=0.338 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++. ++.+||||||+|. +...+|+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~--~~~~ad~~~~ 504 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQ--VAGCGHQHFF 504 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH--HHHhCCEEEE
Confidence 479999999999999997 589999999999999999999999999996 4799999999985 5578887664
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.8e-12 Score=133.23 Aligned_cols=117 Identities=27% Similarity=0.506 Sum_probs=102.0
Q ss_pred eeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhcCCCCccccCCC---Ccch
Q 015591 3 RFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEFLAPRWQKMLPT---NTTI 79 (404)
Q Consensus 3 r~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef~~~~~~~~~~~---~~~~ 79 (404)
-+++++.||...|+.++.+++..|++++||+++.+.+|.||+|++|+|+..|+|||++.|||.+....|...+ -...
T Consensus 488 ~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~ 567 (613)
T KOG0061|consen 488 LFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCEST 567 (613)
T ss_pred HHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCccccc
Confidence 3688999999999999999999999999999999999999999999999999999999999998555554321 2457
Q ss_pred hhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 015591 80 GQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFL 121 (404)
Q Consensus 80 G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 121 (404)
|.+++...++.. ..+|.++.+++++.+++-++.++++.+.
T Consensus 568 ~~~~l~~~~~~~--~~~~~~l~~l~~~~~~~~il~y~~L~~~ 607 (613)
T KOG0061|consen 568 GEDVLKQLGFED--SSFWLDLLVLLAFIVFFRVLGYLALRFR 607 (613)
T ss_pred HHHHHHhcCCcc--cccchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 888999888754 5679999999999999999988888764
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-12 Score=133.66 Aligned_cols=71 Identities=15% Similarity=0.329 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh
Q 015591 329 NGLSTEQRKRLTIAVELV----------ANPSIIFMDEPT-TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA 397 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~----------~~p~iLlLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~ 397 (404)
..||||||||++||++|+ .+|++||||||| ++||+.+...+.+.|+++ .|.|||++||++. +...
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~~ 542 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQK 542 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chhh
Confidence 479999999999999887 599999999998 789999999999999998 5899999999964 5677
Q ss_pred cccccc
Q 015591 398 FDEVKQ 403 (404)
Q Consensus 398 fd~~l~ 403 (404)
+|+++.
T Consensus 543 ~d~~~~ 548 (562)
T PHA02562 543 FDRHLK 548 (562)
T ss_pred hhcEEE
Confidence 898865
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-11 Score=139.33 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh
Q 015591 328 VNGLSTEQRKRLTIAVELVA----------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA 397 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~----------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~ 397 (404)
+..|||||++|++||+||+. +|++|||||||+|||+.+...+++.|+++.+.|++|++|||++. .....
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHhh
Confidence 45799999999999999985 79999999999999999999999999999878999999999986 46667
Q ss_pred cccccc
Q 015591 398 FDEVKQ 403 (404)
Q Consensus 398 fd~~l~ 403 (404)
+|++.+
T Consensus 1027 ~~~i~v 1032 (1042)
T TIGR00618 1027 PHRILV 1032 (1042)
T ss_pred CCEEEE
Confidence 787764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.5e-11 Score=110.74 Aligned_cols=134 Identities=20% Similarity=0.211 Sum_probs=80.0
Q ss_pred eeeCCcEEEEEcCCCCcHHHH-HHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhh
Q 015591 213 SLRPGVLTALMGVSGAGKTTL-LDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWL 291 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTL-l~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~ 291 (404)
-+++|+++.|.|+|||||||| ++++++....+. . +.|+.. ..|..+.+.....+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~--~-----------------~~yi~~------e~~~~~~~~~~~~~ 74 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY--S-----------------VSYVST------QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC--c-----------------EEEEeC------CCCHHHHHHHHHHh
Confidence 489999999999999999999 688887544321 1 233332 12333333332211
Q ss_pred hcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CH
Q 015591 292 RLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV----ANPSIIFMDEPTTGL----DA 363 (404)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgL----D~ 363 (404)
.. . +++.... +.-...+. .| .+|+++.++-.+.+.+- .+|+++++||||+++ |+
T Consensus 75 g~--~---------~~~~~~~-~~l~~~~~---~~---~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~ 136 (230)
T PRK08533 75 GY--D---------INKKLIS-GKLLYIPV---YP---LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASE 136 (230)
T ss_pred CC--c---------hHHHhhc-CcEEEEEe---cc---cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcch
Confidence 10 0 0111110 10000111 01 25666555544444333 369999999999999 88
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecC
Q 015591 364 RAAAIIMRAVKNVVDTGRTIVCTIHQ 389 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~~g~tii~~tH~ 389 (404)
...+.+++.++++++.|.|+++++|.
T Consensus 137 ~~~~~l~~~l~~l~~~g~tvi~t~~~ 162 (230)
T PRK08533 137 VAVNDLMAFFKRISSLNKVIILTANP 162 (230)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 88888999999998778877776554
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=140.95 Aligned_cols=112 Identities=19% Similarity=0.126 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH------HHHHHHHHhcCCCE
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK------RLTIAVELVANPSI 351 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq------Rl~IAraL~~~p~i 351 (404)
..|+.|||.+ ..-. ... ..+.+......++. -+... |+.++.++ .||+|||| |++|||+++.+|++
T Consensus 1155 ~~~~~~~i~~-~~~~-~~~-~~~~~~~~~~~~~~--~~~~~-~~~~~~~~--~lS~Gq~~~~~~~~rlala~~~~~~~~i 1226 (1311)
T TIGR00606 1155 RGQDIEYIEI-RSDA-DEN-VSASDKRRNYNYRV--VMLKG-DTALDMRG--RCSAGQKVLASLIIRLALAETFCLNCGI 1226 (1311)
T ss_pred CccHHHHhhc-CCCC-ChH-HHHHHHcCchHHHh--ccCCC-CeecCCCC--CCchhhhhHhhHhHHHHHHHHHhcCCCE
Confidence 4689999987 2110 000 01111122223332 13233 56666543 69999999 99999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCeEEEEecCCCHHHHHhc
Q 015591 352 IFMDEPTTGLDARAAAIIMRAVKNVVD-----TGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 352 LlLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~tH~~~~~i~~~f 398 (404)
|+|||||+|||+.+...+.+.|.++.. .|.|||+|||++. .+..++
T Consensus 1227 l~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~~ 1277 (1311)
T TIGR00606 1227 IALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELLG 1277 (1311)
T ss_pred EEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHHh
Confidence 999999999999999999999988732 3789999999986 455544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=115.35 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 330 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~---------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|-+++.+.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~~ 330 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAPP 330 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCCC
Confidence 48999999999999999 899999999999999999999999888643 345655565443
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=104.97 Aligned_cols=75 Identities=16% Similarity=0.079 Sum_probs=60.8
Q ss_pred CCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCeEEEEecCCCH-------
Q 015591 329 NGLSTEQRK------RLTIAVELVANPSIIFMDEPTTGLD---ARAAAIIMRAVKNVVDTGRTIVCTIHQPSI------- 392 (404)
Q Consensus 329 ~~LSgGqrq------Rl~IAraL~~~p~iLlLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii~~tH~~~~------- 392 (404)
..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~ 149 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG 149 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence 358999998 4445555667999999999999999 888888889999988789999999998753
Q ss_pred -HHHHhcccccc
Q 015591 393 -DIFEAFDEVKQ 403 (404)
Q Consensus 393 -~i~~~fd~~l~ 403 (404)
.+...+|.++.
T Consensus 150 ~~~~~~aD~ii~ 161 (187)
T cd01124 150 GDVEYLVDGVIR 161 (187)
T ss_pred CceeEeeeEEEE
Confidence 25667787764
|
A related protein is found in archaea. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.7e-11 Score=102.35 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTT----------GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID 393 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPts----------gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~ 393 (404)
.+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|..+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666678888999999999999999995 4455555666666655555699999999988644
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.2e-10 Score=100.09 Aligned_cols=62 Identities=18% Similarity=0.353 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+..|.||-=---+.+.+ .+--+.|||||-++|.+.-+..++..|+++++.|.-+||+||.|=
T Consensus 128 h~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 128 HHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 45789987665566554 456799999999999999999999999999999999999999873
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.4e-11 Score=131.77 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=64.7
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 328 VNGLSTEQRK------RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 328 ~~~LSgGqrq------Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+..|||||+| |+++|++++.+|+++||||||++||+..+..+.+.|..+.+.+.+||++||++ ++...||++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~~ 863 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADYV 863 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCeE
Confidence 3569999999 55566688899999999999999999999999999999876688999999997 467889998
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 864 ~~ 865 (880)
T PRK03918 864 IR 865 (880)
T ss_pred EE
Confidence 64
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.6e-11 Score=132.09 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=59.4
Q ss_pred CCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 328 VNGLSTEQRKRLTIAVELVA--------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~--------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
+..|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||..
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~ 1017 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE 1017 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH
Confidence 46799999999999999995 8999999999999999999999999999987899999999954
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-10 Score=126.69 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CeEEEEecCCCHHHHHhc
Q 015591 328 VNGLSTEQRKRLTI------AVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DT-G-RTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 328 ~~~LSgGqrqRl~I------AraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~-g-~tii~~tH~~~~~i~~~f 398 (404)
+..||||||+|++| |++++.+|++++|||||++||+.....+.+.++... .. | .|+|++||++. +...|
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHhc
Confidence 45799999999975 589999999999999999999999999999998643 33 3 48999999985 45789
Q ss_pred ccccc
Q 015591 399 DEVKQ 403 (404)
Q Consensus 399 d~~l~ 403 (404)
|+++.
T Consensus 877 d~ii~ 881 (895)
T PRK01156 877 DVAYE 881 (895)
T ss_pred CeEEE
Confidence 98874
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=111.07 Aligned_cols=160 Identities=16% Similarity=0.220 Sum_probs=100.0
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC---c--------hhhhcceeEEeecC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK---V--------QETFARVSGYCEQT 272 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~---~--------~~~~~~~~g~v~Q~ 272 (404)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.|.+.|+.- . ...+++.+.++.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD--LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 4589999 999999999999999999999999999987764 59998865431 1 12356778888864
Q ss_pred CCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC-HHHHHHHHHHHHHhcCCCE
Q 015591 273 DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS-TEQRKRLTIAVELVANPSI 351 (404)
Q Consensus 273 ~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS-gGqrqRl~IAraL~~~p~i 351 (404)
+.- + -.+....+.+ .+.++.+.+. | .|.++-. .+++ .-|-+| ++.
T Consensus 223 ~~~-~--~~r~~~~~~a-------------~~iAEyfr~~-g----~~Vll~~---Dsltr~A~A~r-----Eis----- 268 (438)
T PRK07721 223 DQP-A--LMRIKGAYTA-------------TAIAEYFRDQ-G----LNVMLMM---DSVTRVAMAQR-----EIG----- 268 (438)
T ss_pred CCC-H--HHHHHHHHHH-------------HHHHHHHHHC-C----CcEEEEE---eChHHHHHHHH-----HHH-----
Confidence 431 1 1111111111 1112222221 2 2222211 1121 111111 111
Q ss_pred EEEeC--CCCCCCHHHHHHHHHHHHHHHh--CCC-----eEEEEecCCCHHHHHhcccccc
Q 015591 352 IFMDE--PTTGLDARAAAIIMRAVKNVVD--TGR-----TIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 352 LlLDE--PtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.+.| .|+|+|+.....+.+.++++.. .|. ||++.+||.+. ..+|++..
T Consensus 269 l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~ 326 (438)
T PRK07721 269 LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRG 326 (438)
T ss_pred HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEE
Confidence 12344 4789999999999999999873 575 99999999983 66776653
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=107.47 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=78.0
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFS 288 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~ 288 (404)
=+++.++.|+.++|+||+|||||||+++|++..++. .|.+.+....--.......+.++.+..
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~--~~iv~ied~~El~~~~~~~~~l~~~~~--------------- 198 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD--ERIITIEDTREIFLPHPNYVHLFYSKG--------------- 198 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc--ccEEEEcCccccCCCCCCEEEEEecCC---------------
Confidence 367889999999999999999999999999987653 366666432100000001111111100
Q ss_pred hhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 015591 289 AWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 368 (404)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~ 368 (404)
-.+ ....+- .-.++.+|-.+|+++++|||.+ .+
T Consensus 199 --------------------------~~~----------~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 199 --------------------------GQG----------LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred --------------------------CCC----------cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 000 001222 1245667888999999999996 34
Q ss_pred HHHHHHHHHhCCC-eEEEEecCCCHHHHHhccccc
Q 015591 369 IMRAVKNVVDTGR-TIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 369 i~~~l~~l~~~g~-tii~~tH~~~~~i~~~fd~~l 402 (404)
+++.++.+. .|. +++.|+|..+. ....||+.
T Consensus 232 ~~~~l~a~~-~g~~~~i~T~Ha~~~--~~~~~Rl~ 263 (308)
T TIGR02788 232 AFDFIRAVN-TGHPGSITTLHAGSP--EEAFEQLA 263 (308)
T ss_pred HHHHHHHHh-cCCCeEEEEEeCCCH--HHHHHHHH
Confidence 566677665 554 67999999873 44455553
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=110.91 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=99.1
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
..+++++ +.+.+|+.++|+|+||+|||||+++|++...++ .|.|.+.|+.. .+|+|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~--~gvI~~iGerg---------------------~ev~e 199 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD--INVISLVGERG---------------------REVKD 199 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC--eEEEEeCCCCc---------------------ccHHH
Confidence 4588885 999999999999999999999999999987653 46665554321 24555
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV-------ANPSIIFMDE 356 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~-------~~p~iLlLDE 356 (404)
.+.... ..-++.. ...+- ...+-|.|+|+|++.+.+.+ .++-+|++|+
T Consensus 200 ~~~~~l---------------------~~~gl~~--tvvv~--~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 200 FIRKEL---------------------GEEGMRK--SVVVV--ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred HHHHHh---------------------hhcccce--eEEEE--ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 443211 0001110 01111 12468999999999998887 6888999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~f 398 (404)
||...|+. ++|-..+.+....|.+..+.+|.+ .+++..
T Consensus 255 lTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~ERa 292 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLERS 292 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHHHh
Confidence 99999996 556556666554588888888842 466554
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=98.44 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+++++|..+|+++++|||. |.+....++ +.+..|..++.|+|.++. .+..|+++
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~ 119 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRII 119 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHH
Confidence 4788999999999999996 665433333 344579999999999873 45667664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-10 Score=128.79 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 328 VNGLSTEQRKRLTIAVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+..||||||||++||++++ .+|+++||||||++||+.+...+.+.|+++++ +.++|+|||++. .+..+|+++
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 3579999999999999984 67799999999999999999999999999864 588999999986 457799875
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-09 Score=114.84 Aligned_cols=58 Identities=21% Similarity=0.143 Sum_probs=49.1
Q ss_pred HhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH--------HHHhccccc
Q 015591 345 LVANPSIIFMDEPTTGL-DARAAAIIMRAVKNVVDTGRTIVCTIHQPSID--------IFEAFDEVK 402 (404)
Q Consensus 345 L~~~p~iLlLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~--------i~~~fd~~l 402 (404)
+..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+++.. +.+.||..+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i 715 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKI 715 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEE
Confidence 35799999999999999 79999999999999988899999999999732 235677554
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-10 Score=100.91 Aligned_cols=66 Identities=18% Similarity=0.346 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEP--TTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEP--tsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
.+|++++-+..+++..+.+|+++++||| +.++|. .+++.+.++.+.|+++|+++|+. .+....|++
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i 145 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEI 145 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCCCeEEEEECch--hhHHHHHHH
Confidence 5999999999999999999999999995 444443 35666666666799999999984 344455554
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=8e-09 Score=97.31 Aligned_cols=72 Identities=26% Similarity=0.317 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCeEEEEecCCCH------HHHHhcc
Q 015591 331 LSTEQRKRLTIAVELVA--NPSIIFMDEPTTG---LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI------DIFEAFD 399 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~--~p~iLlLDEPtsg---LD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~------~i~~~fd 399 (404)
.+.++++.+...+.++. +|+++++||||+. .|......+++.++.+++.|.|+++++|+... .+..++|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 57788999999999997 8999999999964 45555555656677667779999999998753 1455566
Q ss_pred ccc
Q 015591 400 EVK 402 (404)
Q Consensus 400 ~~l 402 (404)
.++
T Consensus 181 gvI 183 (234)
T PRK06067 181 VYL 183 (234)
T ss_pred EEE
Confidence 554
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.5e-09 Score=110.79 Aligned_cols=118 Identities=21% Similarity=0.389 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHH------cCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET------IELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~------l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
..+++.|.+.|...+.... .........++++.++ +||.-+ .++. ...|||||.||+-+|..+-++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~-----a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRS-----AGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCccccccc-----CCCcChhHHHHHHHHHHhcccc
Confidence 3577888888866554211 1111112223333333 355432 1222 3479999999999999998873
Q ss_pred -C-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 350 -S-IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 350 -~-iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
. +++||||+.||.++.-.++++.|++|++.|-|+|++.||+ +.....|+++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iI 553 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHII 553 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEE
Confidence 3 4699999999999999999999999999999999999997 5688889876
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-09 Score=123.80 Aligned_cols=73 Identities=10% Similarity=0.141 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+..||||||++++||++++. +|+++|||||+++||+..+..+.+.|+++.+ +.++|++||++. ++..+|+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 34799999999999999985 7899999999999999999999999999864 578999999974 6789999874
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-08 Score=82.31 Aligned_cols=59 Identities=27% Similarity=0.345 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCCeEEEEec
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMR------AVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~------~l~~l~~~g~tii~~tH 388 (404)
...+++..+..++++-..+|+++++||+..-.+......... ........+..+|+++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 467888888888888888899999999999999988876654 12222335788999998
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.3e-09 Score=106.77 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=93.3
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
.++++.+..+++|++++++||||+||||++..|++.+... +|. +.++++.++. +..++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--~G~--------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR--HGA--------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh--cCC--------------CeEEEEeCCc---cchhHHHH
Confidence 3566777778899999999999999999999999864321 131 2467777743 45789999
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC-----CEEEEeCCCC
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP-----SIIFMDEPTT 359 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p-----~iLlLDEPts 359 (404)
|.+.+.....+.... ....+......++.+....++...| .|.-. ..+.-..+++.++ .+|+||.++.
T Consensus 305 Lr~~AeilGVpv~~~---~~~~Dl~~aL~~L~d~d~VLIDTaG---r~~~d-~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 305 LRIYGKILGVPVHAV---KDAADLRLALSELRNKHIVLIDTIG---MSQRD-RMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHHhCCCeecc---CCchhHHHHHHhccCCCeEEeCCCC---cChhh-HHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 998776553221111 1112333445567666666665432 22211 1233444455554 6899999887
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH 388 (404)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344455555445666555665
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-09 Score=111.05 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=44.0
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee-EEEECCccCc
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG-EIKIGGYPKV 258 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G-~I~i~G~~~~ 258 (404)
.++|++||+++++||+++|+|||||||||||+ +|+..+. +| +|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~--sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS--EGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC--CCCEEEECCEECC
Confidence 46899999999999999999999999999999 6665553 35 8999998753
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-09 Score=117.94 Aligned_cols=74 Identities=27% Similarity=0.364 Sum_probs=63.2
Q ss_pred CCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEEecCCCHHH
Q 015591 328 VNGLSTEQRK------RLTIAVELVAN-----P-SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGR-TIVCTIHQPSIDI 394 (404)
Q Consensus 328 ~~~LSgGqrq------Rl~IAraL~~~-----p-~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~-tii~~tH~~~~~i 394 (404)
+..||||||+ |+++|++++.+ | +++||||||++||+.....+.+.|+.+...|. +||++||++. +
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 3579999999 89999998863 3 67999999999999999999999999876564 8999999985 4
Q ss_pred HHhcccccc
Q 015591 395 FEAFDEVKQ 403 (404)
Q Consensus 395 ~~~fd~~l~ 403 (404)
...+|+++.
T Consensus 857 ~~~ad~~~~ 865 (880)
T PRK02224 857 VGAADDLVR 865 (880)
T ss_pred HHhcCeeEE
Confidence 567998875
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.4e-09 Score=97.59 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=39.4
Q ss_pred HhcCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q 015591 345 LVANPSIIFMDEPTT------GLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 345 L~~~p~iLlLDEPts------gLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~ 391 (404)
...+|+++++| |++ .+|+.....+++.|++++++ |.|||+++|...
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 35799999999 765 47999999999999998764 999999999873
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.1e-09 Score=103.74 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 330 GLSTEQRKRLTIAVELVA---------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~---------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|.+. |.++++|+|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999998753 779999999875
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=92.78 Aligned_cols=85 Identities=19% Similarity=0.136 Sum_probs=61.7
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCC--CCCCCCCHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTD--IHSPQITVEE 283 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~--~~~~~~Tv~e 283 (404)
..+=+.+.+++|+.++|+||||||||||++.|+|+.++. .|.|.+.+........+..++++.|.+ ...+..+..+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 445566778999999999999999999999999987754 589998775322112234566666543 2356689999
Q ss_pred HHHHHhhhh
Q 015591 284 SVIFSAWLR 292 (404)
Q Consensus 284 ~l~~~~~~~ 292 (404)
.+....+.+
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 998776543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-07 Score=102.17 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=47.4
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 341 IAVELVANPSIIFMDEPTTGL-DARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 341 IAraL~~~p~iLlLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~ 731 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS 731 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 678888999999999999999 799999999999999888999999999987
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=93.82 Aligned_cols=54 Identities=20% Similarity=0.426 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+++++|-.+|+++++||+. |+++....++. +..|.+++.+.|-.+. ....+|++
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a~tGh~v~~T~Ha~~~--~~~~~Rl~ 240 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTA----AETGHLVFGTLHTNSA--AQTIERII 240 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----HHcCCcEEEEEcCCCH--HHHHHHHH
Confidence 3677888999999999997 88877654442 4579999999998763 35555553
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.9e-08 Score=107.48 Aligned_cols=75 Identities=23% Similarity=0.360 Sum_probs=64.8
Q ss_pred CCCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhc
Q 015591 327 GVNGLSTEQRKRLTIAVELV------AN--PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~------~~--p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~f 398 (404)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.+...++++|..+...+++|++|||++ ++-+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 45689999998877776654 46 689999999999999999999999999987799999999997 467889
Q ss_pred ccccc
Q 015591 399 DEVKQ 403 (404)
Q Consensus 399 d~~l~ 403 (404)
|.++.
T Consensus 890 ~~~i~ 894 (908)
T COG0419 890 DVRIR 894 (908)
T ss_pred CeEEE
Confidence 88763
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-08 Score=98.66 Aligned_cols=88 Identities=18% Similarity=0.133 Sum_probs=67.8
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eeeEEEECCccCch---h------hhcceeEEeecC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-MEGEIKIGGYPKVQ---E------TFARVSGYCEQT 272 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~-~~G~I~i~G~~~~~---~------~~~~~~g~v~Q~ 272 (404)
+..+++++ +.+.+||+++|+|+||+|||||+++|+|...++. .-|.|-.+|.+... . ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35799999 9999999999999999999999999999876542 12455555543211 1 124468999999
Q ss_pred CCCCCCCCHHHHHHHHhhh
Q 015591 273 DIHSPQITVEESVIFSAWL 291 (404)
Q Consensus 273 ~~~~~~~Tv~e~l~~~~~~ 291 (404)
+..+..+++.+++.+.+..
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 8888899999999876654
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=104.54 Aligned_cols=137 Identities=20% Similarity=0.232 Sum_probs=82.9
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
.+-+|+++. ..+.++.|.|||.+||||+|+.++-..- ..+.-.|||-.... +++.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-------------------lAq~G~~VPa~~a~---i~~~d- 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-------------------LAQIGSFVPAESAR---IGIVD- 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-------------------HHhcCCceeccceE---ecccC-
Confidence 456777777 6678999999999999999999864210 00111233321110 11111
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CC
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA--NPSIIFMDEP---TT 359 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~--~p~iLlLDEP---ts 359 (404)
++..++|- .|.+. .++|.=+.....++..|-. +++++|+||| |+
T Consensus 652 -----------------------~I~triga---~d~i~-----~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 652 -----------------------RIFTRIGA---SDDLA-----SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -----------------------eeeeccCc---ccccc-----cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 11111121 12221 2467666666666666654 8999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccc
Q 015591 360 GLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~ 400 (404)
.+|..+ .....++.+.+. |.++|++||.. ++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 999544 445566666655 58999999994 56666553
|
|
| >PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.2e-08 Score=71.62 Aligned_cols=56 Identities=52% Similarity=0.947 Sum_probs=51.4
Q ss_pred CcchhhhhhhccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccch
Q 015591 76 NTTIGQEILESRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMI 131 (404)
Q Consensus 76 ~~~~G~~~l~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (404)
+.++|.++|+++|+..+.+|+|+++|++++|.++|++++.+++.++++...++++.
T Consensus 9 ~~tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~k~~aii 64 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLGKSQAII 64 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCcC
Confidence 47899999999999999999999999999999999999999999999877666553
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain []. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-09 Score=113.65 Aligned_cols=164 Identities=19% Similarity=0.179 Sum_probs=93.6
Q ss_pred eeeee-eeeeeCCcEEEEEcCCCCcHHHHHHHH--hCCCCCCceeeEEEECCccCchhhh---cceeEEeecCCCCCCCC
Q 015591 206 LLYDV-TGSLRPGVLTALMGVSGAGKTTLLDVL--AGRKTTGSMEGEIKIGGYPKVQETF---ARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 206 iL~~v-s~~i~~Ge~~alvG~sGaGKSTLl~~L--~g~~~~~~~~G~I~i~G~~~~~~~~---~~~~g~v~Q~~~~~~~~ 279 (404)
-||.+ .+-+++|.++.|.|++|||||||..-. .|....+. .-+++...... ..+ .+..|+-.+....-
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge--~~lyvs~eE~~-~~l~~~~~~~G~~~~~~~~~--- 82 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE--PGVFVTFEESP-QDIIKNARSFGWDLQKLVDE--- 82 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC--CEEEEEEecCH-HHHHHHHHHcCCCHHHHhhc---
Confidence 45564 567899999999999999999999866 34333221 34455433211 112 12234332211000
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA--VELVANPSIIFMDEP 357 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IA--raL~~~p~iLlLDEP 357 (404)
+++.+ ... .. ......+++.+++.+..+... ..+|+|++||+.|+ .++...|+..
T Consensus 83 ---g~l~~-----~~~--~~---~~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 83 ---GKLFI-----LDA--SP---DPEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ---CceEE-----Eec--Cc---hhccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 00000 000 00 000111223334444444443 25899999999999 5666665433
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH-------H-HHhcccccc
Q 015591 358 TTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID-------I-FEAFDEVKQ 403 (404)
Q Consensus 358 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~-------i-~~~fd~~l~ 403 (404)
...++.+.++++.+++.|.|+|+++|+++.. + ..++|.++.
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~ 188 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVI 188 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEE
Confidence 4677888999999888899999999987521 1 345677663
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=108.58 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 329 NGLSTEQRKRLT----IAVE--------LVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 329 ~~LSgGqrqRl~----IAra--------L~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
.+||||||||+. +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|++||.+
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 579999999996 5655 45799999999999999999999999999876 78999999973
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-07 Score=93.07 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=61.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC---
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG--- 254 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G--- 254 (404)
.++.++++..+.. +..+++.++ .+.+||.++|+|+||||||||+++|+++..++ .|.|.+.|
T Consensus 139 ~~~r~~v~~~l~T------------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd--~gvv~liGerg 203 (450)
T PRK06002 139 AMTRARVETGLRT------------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD--TVVIALVGERG 203 (450)
T ss_pred CeEeecceEEcCC------------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--eeeeeecccCC
Confidence 4677777776532 356888886 89999999999999999999999999987764 58888864
Q ss_pred ccCch-------hhhcceeEEeecCCC
Q 015591 255 YPKVQ-------ETFARVSGYCEQTDI 274 (404)
Q Consensus 255 ~~~~~-------~~~~~~~g~v~Q~~~ 274 (404)
.++.. ...++.+++|+|.+.
T Consensus 204 rev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 204 REVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred ccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 33211 113467899999764
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=86.55 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=60.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN 298 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~ 298 (404)
+++|.||||||||||.+.|++.... |.+.+ +.+++.+ ...+..+...........+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~----~~~~v----------------~~~D~~~-~~~~~~~~~~~~~~~~~~~--- 56 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN----PKVVI----------------ISQDSYY-KDLSHEELEERKNNNYDHP--- 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC----CCeEE----------------EEecccc-cccccccHHHhccCCCCCC---
Confidence 5899999999999999999986521 22222 2222211 1112222111111000000
Q ss_pred hhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 299 ~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
.....+...+.++.+...+..+.. ....|.|++++..+ .+.+|+++|+|+|+.+.++.
T Consensus 57 ~~~~~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 57 DAFDFDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred CcccHHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 011112223444444433322222 23578888776555 56789999999999999863
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-08 Score=91.61 Aligned_cols=46 Identities=28% Similarity=0.400 Sum_probs=33.0
Q ss_pred eeeee-eeeeeCCcEEEEEcCCCCcHHHHHHHHh--CCCCCCceeeEEEECC
Q 015591 206 LLYDV-TGSLRPGVLTALMGVSGAGKTTLLDVLA--GRKTTGSMEGEIKIGG 254 (404)
Q Consensus 206 iL~~v-s~~i~~Ge~~alvG~sGaGKSTLl~~L~--g~~~~~~~~G~I~i~G 254 (404)
-||.+ ..-+++|+++.|.|++|+|||||...++ +. ..+ ++.+++..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g--~~~~~is~ 56 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDG--DPVIYVTT 56 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcC--CeEEEEEc
Confidence 45553 5678999999999999999999988655 33 222 24456654
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.3e-06 Score=91.70 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=43.5
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 344 ELVANPSIIFMDEPTTGLD-ARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 344 aL~~~p~iLlLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+++
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3557899999999999999 88888999999999888999999999986
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-07 Score=85.09 Aligned_cols=68 Identities=22% Similarity=0.198 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh-hhc-ceeEEeecCCCCCCCCCHHHHHHHHh
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-TFA-RVSGYCEQTDIHSPQITVEESVIFSA 289 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-~~~-~~~g~v~Q~~~~~~~~Tv~e~l~~~~ 289 (404)
+||+++|+|+||||||||+++|+++..+ +.++|.+.... ..+ ...|+.+|+...++..++.+++.+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 6999999999999999999999997653 46777654321 111 23466666655556677777776654
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=100.93 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=36.3
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
=+++..+++++++|+|++|+|||||++.+++.... ...|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeec
Confidence 34667788999999999999999999999775433 2368888875
|
syringae 6; Provisional |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-05 Score=89.60 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=42.3
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 345 LVANPSIIFMDEPTTGLD-ARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 345 L~~~p~iLlLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+++
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 77888999999999888999999999986
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.5e-06 Score=71.33 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCeEEEEecCCC-----HHHHHhcccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-----TGRTIVCTIHQPS-----IDIFEAFDEV 401 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~tH~~~-----~~i~~~fd~~ 401 (404)
++..........++.++++||.-.. ++.....+.+.+..... .+.++|++++... ..+...||..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~ 146 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIR 146 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccE
Confidence 3444455566778999999998654 56667778888877643 4778999998543 3455555533
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-07 Score=85.14 Aligned_cols=62 Identities=27% Similarity=0.607 Sum_probs=59.4
Q ss_pred eeeecccCCHHHHHHHHHHHHHHHHHHhcccccCCCccchhhhhhccChHHHHHHHHHhhhc
Q 015591 3 RFVASVFQTVVAAMTAGSFAILLVLLFGGFVISKPSMPVWLKWGFWISPVTYGEIGLSLNEF 64 (404)
Q Consensus 3 r~~~~~~~~~~~a~~~~~~~~~~~~~~~Gf~i~~~~~~~w~~W~~~i~p~~y~~~al~~nef 64 (404)
.++++++++...|+.+.+++..++.+++|.++|.+.+|+|++|+.|+||+.|+.|++..++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 149 LLLAALFPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred cccccchhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 46889999999999999999999999999999999999999999999999999999999887
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.5e-07 Score=65.84 Aligned_cols=35 Identities=34% Similarity=0.492 Sum_probs=28.0
Q ss_pred eeeeeeeeeC-CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 207 LYDVTGSLRP-GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 207 L~~vs~~i~~-Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+++.++.+.+ |.++.|.|+||||||||++.+.=..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455667775 5799999999999999999987543
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.5e-06 Score=80.16 Aligned_cols=36 Identities=39% Similarity=0.468 Sum_probs=32.2
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+.|+++..-+++|+++.|.|++|+|||||+..++.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457888888999999999999999999999988765
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-05 Score=80.07 Aligned_cols=152 Identities=17% Similarity=0.216 Sum_probs=88.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc---Cc--------hhhhcceeEEeec
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP---KV--------QETFARVSGYCEQ 271 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~---~~--------~~~~~~~~g~v~Q 271 (404)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++ .|.+...|.. .. ...+++.+-++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~--~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD--VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC--EEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35699999 999999999999999999999999999987654 3665555542 11 0112334444444
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC-HHHHHHHHHHHHHhcCCC
Q 015591 272 TDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS-TEQRKRLTIAVELVANPS 350 (404)
Q Consensus 272 ~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS-gGqrqRl~IAraL~~~p~ 350 (404)
.+. +..+-..-+ . .....++.+.+. |. |.++=. .+|+ --|-+| .|+
T Consensus 227 ~d~-----~p~~r~~~~-~----------~a~t~AE~frd~-G~----~Vll~~---DslTr~A~A~R-Eis-------- 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKGA-Y----------VATAIAEYFRDQ-GK----DVLLLM---DSVTRFAMAQR-EIG-------- 273 (440)
T ss_pred CCC-----CHHHHHHHH-H----------HHHHHHHHHHHC-CC----CEEEEE---eChHHHHHHHH-HHH--------
Confidence 332 111111100 0 001122333321 21 222110 1122 112222 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------eEEEEecCCC
Q 015591 351 IIFMDEP--TTGLDARAAAIIMRAVKNVVDTGR-------TIVCTIHQPS 391 (404)
Q Consensus 351 iLlLDEP--tsgLD~~~~~~i~~~l~~l~~~g~-------tii~~tH~~~ 391 (404)
+.+.|| +.|+|+.....+.+++.+....+. ||++.+||.+
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~ 322 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN 322 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC
Confidence 234564 559999999999999999876667 8888999875
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-06 Score=85.93 Aligned_cols=53 Identities=26% Similarity=0.280 Sum_probs=45.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeee-----------eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLY-----------DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.+.|+||++.|+. ++.+|+ |+++.+.+||.++|+||+|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~------------er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPN------------ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCC------------ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 5999999998853 234675 9999999999999999999999999999997543
|
Members of this family differ in the specificity of RNA binding. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-05 Score=70.82 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 015591 330 GLSTEQRKRLT--IAVELVA-NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379 (404)
Q Consensus 330 ~LSgGqrqRl~--IAraL~~-~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~ 379 (404)
.+++||+|++. +++.+-. +++++ |||++|......+.+.|.++.++
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 147 KLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 47999999987 5555543 34443 99999999999999999887654
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.5e-05 Score=71.07 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=34.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCCeEEEEecCCC
Q 015591 346 VANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVD-TGRTIVCTIHQPS 391 (404)
Q Consensus 346 ~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~-~g~tii~~tH~~~ 391 (404)
+.+..++|+||...|=++.....+.. .++.+.+ .+..+|++||..+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 34567899999999999998887764 4455666 4889999999975
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.5e-06 Score=66.97 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=35.8
Q ss_pred CCCCHHHHH-HHHHHHH------Hhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 015591 329 NGLSTEQRK-RLTIAVE------LVA------NPSIIFMDEPTTGLDARAAAIIMRAVKN 375 (404)
Q Consensus 329 ~~LSgGqrq-Rl~IAra------L~~------~p~iLlLDEPtsgLD~~~~~~i~~~l~~ 375 (404)
.++|||||| .+.+|.+ +-. .|.+++||||+++||+.....+++++++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 369999994 4444433 323 3689999999999999999999999874
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.8e-06 Score=84.87 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=53.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eeeEEEECCccCch---h----hhcceeEEeecC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-MEGEIKIGGYPKVQ---E----TFARVSGYCEQT 272 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~-~~G~I~i~G~~~~~---~----~~~~~~g~v~Q~ 272 (404)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++. +-|.|-.+|.+... . ...+++++|+..
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 35699999 9999999999999999999999999999766542 23888888886421 1 122456777654
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-06 Score=86.78 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=57.5
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESV 285 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l 285 (404)
-++.+.-.+++|++++|+|+||+|||||++.|+|...+ ..|+|.+++.........+.+.+++|...+++ .....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~--~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~D-tpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ--KTGAVREDDSKGRHTTTHRELHPLPSGGLLID-TPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc--ceeeEEECCCCCcchhhhccEEEecCCCeecC-CCchhhh
Confidence 35566667889999999999999999999999997765 45999998754222334456788888665554 3444444
Q ss_pred HH
Q 015591 286 IF 287 (404)
Q Consensus 286 ~~ 287 (404)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 44
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.7e-06 Score=83.31 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=41.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
...+++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.|.+.|
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~-~~~vi~liG 200 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA-DVNVIALIG 200 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC-CceEEEEEC
Confidence 35689998 999999999999999999999999999976321 236777655
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-06 Score=81.32 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=25.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
++|++++|+||||||||||++.|+++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6799999999999999999999999755
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.1e-06 Score=78.76 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=51.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeE----EEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhh
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGE----IKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAW 290 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~----I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~ 290 (404)
.+..+++|.||||||||||++.|++...+. .|. |.+++..... ...+..+++.+.. .....++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~--~g~~~v~i~~D~~~~~~-~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD--GELPAIQVPMDGFHLDN-AVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc--cCCceEEEecccccCCH-HHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 457799999999999999999999977653 366 5555543322 2233457776533 3456788887777655
Q ss_pred hhc
Q 015591 291 LRL 293 (404)
Q Consensus 291 ~~~ 293 (404)
++.
T Consensus 107 l~~ 109 (229)
T PRK09270 107 LRA 109 (229)
T ss_pred HHc
Confidence 553
|
|
| >PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.1e-06 Score=68.97 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=44.3
Q ss_pred Ccchhhhhhh-ccCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccch
Q 015591 76 NTTIGQEILE-SRGLNFDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMI 131 (404)
Q Consensus 76 ~~~~G~~~l~-~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (404)
..+.|++||+ +++|. ..|+|||+||+++|+++|.++..++.++.+.......+.
T Consensus 29 ~~V~G~~YL~~~y~y~--~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~~l 83 (103)
T PF06422_consen 29 TYVSGDDYLEESYGYS--YSHRWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGEVL 83 (103)
T ss_pred cEEeHHHHHhhhcccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCccEE
Confidence 5678999998 56665 468899999999999999999999999988765544443
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=78.37 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
++|.+++|.||+||||||+|++|++...
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999999998653
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.8e-06 Score=76.34 Aligned_cols=51 Identities=31% Similarity=0.368 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQT 272 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~ 272 (404)
|++++|+||||||||||++.|++...+ .+.+++..+.. ...+..+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT-----QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC-----eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999986542 45665554321 1122345566553
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.6e-06 Score=81.83 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=49.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE---CCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI---GGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL 293 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i---~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~ 293 (404)
.++||.|+||||||||+++|.++....+.+|.|.+ ||.-.... .++..++. |...+...+++.+.+.+-..++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~-~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk~ 139 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQ-VLKERNLM-KKKGFPESYDMHRLVKFLSDLKS 139 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHH-HHHHcCCc-cccCCChhccHHHHHHHHHHHHC
Confidence 59999999999999999999987642222467655 44333222 22334544 55566778899888888766653
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-05 Score=85.05 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=67.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCc------eeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHh
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGS------MEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSA 289 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~------~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~ 289 (404)
..+.++|+||||+|||||++++.+...... ..+-+.++|..... ..+. + .+-.++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~----------------i-~~~llg~ 235 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE----------------V-TNPLLGS 235 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH----------------H-hHHhcCC
Confidence 345799999999999999999988643211 11335555533210 0000 0 0111110
Q ss_pred hhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 015591 290 WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369 (404)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i 369 (404)
. .....+.+.+.++..++.+..+..+ ..+||| +||||| +..||+..+..+
T Consensus 236 -------~-~~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 236 -------V-HDPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred -------c-cHHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 0 0011122344566677766555543 357888 999999 799999999999
Q ss_pred HHHHHH
Q 015591 370 MRAVKN 375 (404)
Q Consensus 370 ~~~l~~ 375 (404)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 999875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.9e-05 Score=68.58 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 330 GLSTEQRKRLTIAVEL-----VANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL-----~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
.++.+++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 4688888877666552 3345655 99999999999999888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.8e-06 Score=79.96 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=42.4
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+..-|.
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~--~~vi~~iGe 105 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD--VNVIALIGE 105 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC--EEEEEEEec
Confidence 5699999 999999999999999999999999999987764 366666553
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.2e-06 Score=81.92 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=51.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---------hhhcceeEEeecCCCCCCCCCHHHHH
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---------ETFARVSGYCEQTDIHSPQITVEESV 285 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---------~~~~~~~g~v~Q~~~~~~~~Tv~e~l 285 (404)
++|++++++||||+||||++..|++..... .++|.+-+.+... ...++.+.+++|.....|..++.+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 579999999999999999999999976542 3788887665311 11234578888865555656677776
Q ss_pred HHH
Q 015591 286 IFS 288 (404)
Q Consensus 286 ~~~ 288 (404)
...
T Consensus 190 ~~~ 192 (318)
T PRK10416 190 QAA 192 (318)
T ss_pred HHH
Confidence 654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 404 | ||||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-11 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 7e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 8e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 8e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 9e-09 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-08 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 7e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-08 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 9e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-07 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-07 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-07 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-07 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-07 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-06 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 7e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-04 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-04 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 5e-04 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 5e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-04 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 6e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 6e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 7e-04 |
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 3e-24
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 16/184 (8%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFA--R 264
++ + G + L+G +GAGKTT L +++ + + G + + G V+E +
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRK 88
Query: 265 VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVG 324
+ Y + + E + F A +S E V E L V
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS 145
Query: 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384
S ++L IA L+ NP + +DEPT+GLD A + + +K G TI+
Sbjct: 146 -----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 385 CTIH 388
+ H
Sbjct: 201 VSSH 204
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 3e-22
Identities = 44/197 (22%), Positives = 75/197 (38%), Gaps = 39/197 (19%)
Query: 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFA 263
L + L G + A++G +G GK+TLLD+L G R G +E
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------VY 65
Query: 264 RVSGYCEQTDIHSPQITVEESV---------IFSAWLRLAPEINSKTKAEFVNEVLETIE 314
+ G+ Q +V + V F+ + + L+ +
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKP--------KSHDYQVAMQALDYLN 117
Query: 315 LDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
L + LS QR+ + IA + + +I +DEPT+ LD I++ +
Sbjct: 118 LTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172
Query: 375 NVV-DTGRTIVCTIHQP 390
++ T+V T HQP
Sbjct: 173 DLAQSQNMTVVFTTHQP 189
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 8e-22
Identities = 38/183 (20%), Positives = 82/183 (44%), Gaps = 20/183 (10%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFARVS 266
+T ++ G + G +G GKTTLL ++ + +GEI G P + + ++
Sbjct: 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVP-ITKVKGKI- 80
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
+ + I +I+VE+ + A L K + + LE++E+ +K
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK----- 130
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVC 385
+ LS +R+ +A L+ N I +D+P +D + +++++ ++ + G I+
Sbjct: 131 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189
Query: 386 TIH 388
+
Sbjct: 190 SRE 192
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 3e-21
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 26/194 (13%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ET 261
L ++G +R G + L+G +GAGK+TLL +AG + +G I+ G P
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATK 70
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
A Y Q V + L KT+ E +N+V + LD
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYL----TLHQHD----KTRTELLNDVAGALALDDKLGR 122
Query: 322 LVGIPGVNGLSTEQRKRLTIA-------VELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
N LS + +R+ +A + ++ +DEP LD + + + +
Sbjct: 123 S-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 177
Query: 375 NVVDTGRTIVCTIH 388
+ G IV + H
Sbjct: 178 ALSQQGLAIVMSSH 191
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 5e-19
Identities = 47/247 (19%), Positives = 91/247 (36%), Gaps = 36/247 (14%)
Query: 148 GEIVKGHSRSTPMTNK-ESYKGKMVLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLR- 205
G + S + + + L F + F+ D + R F+ L+
Sbjct: 302 GVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKK 361
Query: 206 -----LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKV 258
+L G + +MG +G GKTTL+ +LAG + G ++ + K
Sbjct: 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS--MKP 419
Query: 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI 318
Q+ TV + +F ++ + + +F +V++ + +D I
Sbjct: 420 QKIAP------------KFPGTVRQ--LFFK--KIRGQFLNP---QFQTDVVKPLRIDDI 460
Query: 319 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV- 377
D V LS + +R+ I + L I +DEP+ LD+ I + ++ +
Sbjct: 461 IDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL 515
Query: 378 DTGRTIV 384
+T
Sbjct: 516 HNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 21/189 (11%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIK---IGGYPKVQETFA 263
+ RPG + L+G +G GK+T L +LAG + G + + I Y + E
Sbjct: 95 HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN 154
Query: 264 RVSGYCEQTDIHSPQI--------TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
+ E + ++ V L + E V ++ ++L
Sbjct: 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR---MEKSPEDVKRYIKILQL 211
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
+ + + LS + +R I + V + DEP++ LD + + +++
Sbjct: 212 ENVLKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
Query: 376 VVDTGRTIV 384
++ + ++
Sbjct: 267 LLAPTKYVI 275
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 8e-19
Identities = 47/227 (20%), Positives = 100/227 (44%), Gaps = 26/227 (11%)
Query: 189 DTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR--KTTGSM 246
+++ + G ++ +L ++ + G L G++GAGKTTLL++L T+G
Sbjct: 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG-- 76
Query: 247 EGEIKIGGYP--KVQETFARVS---GYCEQTDIH---SPQITVEESVI--FSAWLRLAPE 296
+ + G KV + V G+ + V + VI + + +
Sbjct: 77 --TVNLFGKMPGKVGYSAETVRQHIGFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 297 INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 356
I+ + + E +++L+ + + +G LST +++R+ IA L+ P ++ +DE
Sbjct: 134 IDDEIRNE-AHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDE 187
Query: 357 PTTGLDARAAAIIMRAVKNVVDTGR--TIVCTIHQPSIDIFEAFDEV 401
P GLD A ++ + ++ D+ ++ H +I F ++
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKI 233
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 23/216 (10%)
Query: 173 PFEPLTVAFQDLKYYIDTPLEMRERGFTEK-KLRLLYDVTGSLRPGVLTALMGVSGAGKT 231
+ + DL D +M+ +K L G + G + ++G +G GKT
Sbjct: 249 EIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKT 308
Query: 232 TLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWL 291
T +L G T + EG + ++ Y Q + TV++ +L
Sbjct: 309 TFARILVGEIT--ADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQ------YL 351
Query: 292 RLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSI 351
A + T + F EV + + L + +S V N LS + ++L IA L +
Sbjct: 352 ENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADL 406
Query: 352 IFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTI 387
+D+P++ LD I+ +A+K V + + I
Sbjct: 407 YVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 33/181 (18%), Positives = 69/181 (38%), Gaps = 16/181 (8%)
Query: 214 LRPGVLTALMGVSGAGKTTLLDVLAGR------KTTGSMEGEIKIGGYP--KVQETFARV 265
+ + ++G +G GKTT+L +LAG + + + + ++ F +
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 266 SGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGI 325
E +H Q S + + + +EV E + + + +
Sbjct: 82 -YSNELKIVHKIQYVEYASKFLKGTVNEI--LTKIDERGKKDEVKELLNMTNLWN----- 133
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC 385
N LS +RL +A L+ + D+P++ LD R + +A++ ++ IV
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 386 T 386
Sbjct: 194 D 194
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 29/193 (15%)
Query: 196 ERGFTEKKL--RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKI 252
E K L G +R G + ++G +G GKTT + +LAG + T EG+++
Sbjct: 359 EYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW 415
Query: 253 GGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET 312
V+ Y Q + TV E + S + ++NS + E+L+
Sbjct: 416 DL---------TVA-YKPQYIKAEYEGTVYE--LLSK--IDSSKLNSN---FYKTELLKP 458
Query: 313 IELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
+ + + D V LS + +R+ IA L+ + I +DEP+ LD + RA
Sbjct: 459 LGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513
Query: 373 VKNVVD-TGRTIV 384
++++++ +T +
Sbjct: 514 IRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 39/230 (16%), Positives = 90/230 (39%), Gaps = 45/230 (19%)
Query: 173 PFEPLTVAFQDLKYYIDTPLEMRER---GFTEKKLRLLYDVTGSLRPGVLTALMGVSGAG 229
PF +++ ++ P ++ E + L ++ G++ ++G +G G
Sbjct: 80 PFNAISI--------VNLPEQLDEDCVHRYGVNAFVL--YRLPIVKDGMVVGIVGPNGTG 129
Query: 230 KTTLLDVLAGR----KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESV 285
KTT + +LAG+ + + I + ++ + ++
Sbjct: 130 KTTAVKILAGQLIPNLCEDNDSWDNVIRAFR--------------GNELQNYFERLKNGE 175
Query: 286 IFSAWLRLAP---EINSKTKAEFVNEVLETIELDGIKDSLVGIPG--------VNGLSTE 334
I + P ++ K V E+L+ ++ G + +V ++ LS
Sbjct: 176 IRPV---VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGG 232
Query: 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIV 384
+ +R+ IA L+ F DEP++ LD R + R ++ + + G+ ++
Sbjct: 233 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 3e-17
Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 24/184 (13%)
Query: 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIH 275
G ++G +G+GKTTLL ++G G I I G V++ + + +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY---SGNIFINGME-VRKIRNYIRYSTNLPEAY 84
Query: 276 SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DGIKDSLVGIPGVNGLSTE 334
+TV + V L+ + E+L+ ++L + I + LS
Sbjct: 85 EIGVTVNDIVYLYEELK-------GLDRDLFLEMLKALKLGEEILRRKL-----YKLSAG 132
Query: 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDI 394
Q + ++ L + P I+ +DEP +DA +I R +K G+ + H ++
Sbjct: 133 QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTH----EL 185
Query: 395 FEAF 398
Sbjct: 186 DMLN 189
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 29/183 (15%)
Query: 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETF 262
L G ++ G + ++G +G GKTT + +LAG T G +E ++ +
Sbjct: 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--------- 350
Query: 263 ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL 322
Y Q + TV E + S A ++NS + E+L+ + + + D
Sbjct: 351 -----YKPQYIKADYEGTVYE--LLSK--IDASKLNSN---FYKTELLKPLGIIDLYDRE 398
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGR 381
V N LS + +R+ IA L+ + I +DEP+ LD + RA++++++ +
Sbjct: 399 V-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 453
Query: 382 TIV 384
T +
Sbjct: 454 TAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 30/186 (16%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGR----KTTGSMEGEIKIGGYP--KVQETFARVS 266
++ G++ ++G +G GK+T + +LAG+ + + I + ++Q F ++
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
E + PQ ++ K V E+L+ + G + +V
Sbjct: 103 N-GEIRPVVKPQYV---------------DLIPKAVKGKVIELLKKADETGKLEEVVKAL 146
Query: 327 GVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378
+ LS + +R+ IA L+ N + F DEP++ LD R RA++ + +
Sbjct: 147 ELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 379 TGRTIV 384
G++++
Sbjct: 207 EGKSVL 212
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 4e-16
Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 22/197 (11%)
Query: 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPK 257
T + + L +V+ + G + G +G+GK+TLL ++AG T G++ G K
Sbjct: 16 TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERK 71
Query: 258 VQETFARVSGYCEQTDIHSP--QI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLET 312
R G Q P Q V + V F A + N + V V +
Sbjct: 72 KGYEIRRNIGIAFQ----YPEDQFFAERVFDEVAF------AVK-NFYPDRDPVPLVKKA 120
Query: 313 IELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
+E G+ LS +++R+ IA +V P I+ +DEP GLD ++R
Sbjct: 121 MEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 180
Query: 373 VKNVVDTGRTIVCTIHQ 389
V+ G+T++ H
Sbjct: 181 VEKWKTLGKTVILISHD 197
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 8e-15
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 37/200 (18%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYP------KV 258
L + +++ G +TA++G +G GK+TL G + + G I P +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 259 QETFARVSGYCEQTDIHSP--QI---TVEESVIFSAWLRLAPE---INSKTKAEFVNEVL 310
+ + G Q P Q+ +V + V F + + V+ L
Sbjct: 80 MKLRESI-GIVFQ----DPDNQLFSASVYQDVSF------GAVNMKLPEDEIRKRVDNAL 128
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
+ ++ +KD + LS Q+KR+ IA LV P ++ +DEPT GLD + IM
Sbjct: 129 KRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 371 RAVKNV-VDTGRTIVCTIHQ 389
+ + + + G TI+ H
Sbjct: 184 KLLVEMQKELGITIIIATHD 203
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 2e-13
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 43/206 (20%)
Query: 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGS--MEGEIKIGGYP--K 257
+ L V+ S+ G +T ++G +G+GK+TL++V+ G + G E + I +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK-DITNKEPAE 78
Query: 258 VQE-----TFARVSGYCEQTDIHS-PQITVEESV-----------IFSAWLRL--APEIN 298
+ TF QT ++TV E++ + S + + E
Sbjct: 79 LYHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358
KA ++LE ++L + D G LS Q K + I L+ NP +I MDEP
Sbjct: 130 MVEKAF---KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPI 181
Query: 359 TGLDARAAAIIMRAVKNVVDTGRTIV 384
G+ A I V + G T +
Sbjct: 182 AGVAPGLAHDIFNHVLELKAKGITFL 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 3e-13
Identities = 50/322 (15%), Positives = 99/322 (30%), Gaps = 68/322 (21%)
Query: 94 YLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMISLEK---FSEMRVSEDSTSGEI 150
LFW LL+ + F++ L F + +
Sbjct: 66 RLFWT----------LLSKQEEMVQKFVEEV--------LRINYKFLMSPIKTEQ----- 102
Query: 151 VKGHSRSTPMTNKESYKGKM---VLPFEPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLL 207
S + ++ F V+ R + + + + LL
Sbjct: 103 ---RQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--------------RLQPYLKLRQALL 145
Query: 208 YDVTGSLRPGVLTALMGVSGAGKTTL-LDVLAGRKTTGSMEGEI---KIGGYPKVQETFA 263
LRP + GV G+GKT + LDV K M+ +I + +
Sbjct: 146 -----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET--IELDGIKDS 321
+ Q D P T + LR+ I ++ + ++ E + L ++++
Sbjct: 201 MLQKLLYQID---PNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 322 LVGIPGVNG----LSTEQRKRLTIAVELVANPSIIFMDEPTTGL-DARAAAIIMRAVKNV 376
N L T + K++T + A + I +D + L +++++ +
Sbjct: 257 KA-WNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 377 VDTGRTIVCTIHQPSIDIFEAF 398
V T + + I
Sbjct: 315 PQDLPREVLTTNPRRLSIIAES 336
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 47/291 (16%), Positives = 88/291 (30%), Gaps = 62/291 (21%)
Query: 77 TTIGQEILESRGL--NFDGYLFWISLGALFGFALLLNIGFTLALTFLKTSGSSRSMISLE 134
T + ++ S + D +FW++L +L + L L + + +SRS +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRS----D 218
Query: 135 KFSEMRVSEDSTSGEIVKGHSRSTPMTNKESYKGKMVL----------PFEP-----LT- 178
S +++ S E+ + +K +VL F LT
Sbjct: 219 HSSNIKLRIHSIQAEL------RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 179 -----VAFQDLKYYIDTPLEMRERGFTEKK-LRLLYDVTG----SLRPGVL-TALMGVSG 227
F L+ T + LL L VL T +S
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 228 AGKTTLLDVLAGR----------KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSP 277
+ + K T +E + + + ++ F R+S + I P
Sbjct: 333 IAE--SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--P 388
Query: 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328
I + + W + + L +E K+S + IP +
Sbjct: 389 TILLS---LI--WFDVIKSDVMVVVNKLHKYSL--VEKQP-KESTISIPSI 431
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 4e-13
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 37/208 (17%)
Query: 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQ 259
+ +L ++ S++ G +++G SG+GK+TLL +L T EG++ + G
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT----EGKVFLEGKE--- 67
Query: 260 ETFARVSGYC--EQTDIHS-------------PQITVEESVIFSAWLRLAPEINSKTKAE 304
V E + + + P++T E+VI P+ +K + E
Sbjct: 68 -----VDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 305 FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
+L + G+ D L P LS +++R+ IA L P ++F DEPT LD+
Sbjct: 123 ---YLLSEL---GLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174
Query: 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSI 392
+M + + G +IV H+ +
Sbjct: 175 NTKRVMDIFLKINEGGTSIVMVTHEREL 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-12
Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 36/211 (17%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKV 258
E+ + L +V +++ G ++MG SG+GK+T+L+++ + T EGE+ I
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT----EGEVYIDNIK-- 68
Query: 259 QETFARVSGYC--EQTDIHS-------------PQITVEESVIFSAWLRLAPEINSKTKA 303
+ E T I P +T E+V + ++ + +
Sbjct: 69 ------TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122
Query: 304 EFVNEVLETIEL-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+ E L+ EL + + P N LS Q++R+ IA L NP II D+PT LD
Sbjct: 123 KRALECLKMAELEERFANHK---P--NQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 363 ARAAAIIMRAVKNV-VDTGRTIVCTIHQPSI 392
++ IM+ +K + + G+T+V H ++
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 7e-11
Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 26/159 (16%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGY 268
L+ + G +G GK+TL+ +A ++ G+P +E R
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIANG----------QVDGFPTQEE--CRTVYV 500
Query: 269 CEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGV 328
D +V + V S E + + L IE G D ++ +P +
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGV----------GTKEAIKDKL--IEF-GFTDEMIAMP-I 546
Query: 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367
+ LS + +L +A ++ N I+ +DEPT LD A
Sbjct: 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 6e-05
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
G+ +V + GLS Q+ +L +A P +I +DEPT LD + + +A+K
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 18/144 (12%)
Query: 192 LEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK 251
+ E + + D+ A++G +GAGK+TL++VL G GE+
Sbjct: 674 VTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVY 731
Query: 252 IGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE 311
++ Y +Q + ++++ R + +T ++ E
Sbjct: 732 THENCRI--------AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINE 783
Query: 312 T--------IELDGIKDSLVGIPG 327
+++G + GI
Sbjct: 784 NDAEAMNKIFKIEGTPRRIAGIHS 807
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 9e-10
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 31/154 (20%)
Query: 221 ALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS---- 276
L+G +GAGK+ L+++AG GE+++ G + + I
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDR--GEVRLNG-----ADITPLPPE--RRGIGFVPQD 78
Query: 277 ----PQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330
P ++V ++ + LR E + + V E+ E + + + D
Sbjct: 79 YALFPHLSVYRNIAYG--LRNVERVERDRR-----VREMAEKLGIAHLLDRKP-----AR 126
Query: 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
LS +R+R+ +A LV P ++ +DEP + +D +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 2e-09
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 45/197 (22%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYP--K 257
L D++ +P + A G SG GK+T+ GEI I G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---------AGEITIDGQPIDN 68
Query: 258 VQETFARVS-GYCEQTDIHSPQITVEESVIFSAWLR------LAP-----EINSKTKAEF 305
+ R G+ Q +S I + +R L ++ F
Sbjct: 69 ISLENWRSQIGFVSQ-----------DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAF 117
Query: 306 VNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 365
+E + D + ++ VG GV +S QR+RL IA + NP I+ +DE T LD+ +
Sbjct: 118 ARSFVENMP-DQL-NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 366 AAIIMRAVKNVVDTGRT 382
+++ +A+ +++ GRT
Sbjct: 175 ESMVQKALDSLM-KGRT 190
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 47/177 (26%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
+ V+ +R G + L+G SG+GKTT+L ++AG + G++ IGG
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK--GDVWIGGK----------- 77
Query: 267 GYCEQTDIHS---------------PQITVEESVIFSAWLRL----APEINSKTKAEFVN 307
TD+ +TV ++V F LR E++++ V
Sbjct: 78 ---RVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDAR-----VR 127
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
E+L + L+ + + LS Q++R+ +A L P ++ DEP +D +
Sbjct: 128 ELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 7e-09
Identities = 52/235 (22%), Positives = 85/235 (36%), Gaps = 66/235 (28%)
Query: 178 TVAFQDL--KYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLD 235
+ +DL KY +L +++ S+ PG L+G +G+GK+TLL
Sbjct: 19 QMTVKDLTAKYTEGGNA-------------ILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 236 VLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS-------------PQITVE 282
T EGEI+I G S PQ
Sbjct: 66 AFLRLLNT---EGEIQIDG-----------------VSWDSITLEQWRKAFGVIPQ---- 101
Query: 283 ESVIFSAWLR--LAPEINSKTKAEFVNEVLETIEL-DGIK------DSLVGIPGVNGLST 333
+ IFS R L P + + E + +V + + L I+ D ++ G LS
Sbjct: 102 KVFIFSGTFRKNLDP-NAAHSDQE-IWKVADEVGLRSVIEQFPGKLDFVLVDGGCV-LSH 158
Query: 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH 388
++ + +A +++ I+ +DEP+ LD II R +K V
Sbjct: 159 GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ--AFADCTVILCE 211
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 7e-09
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 44/205 (21%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYP--K 257
L + ++ G AL+G SG GK+T + D L +G + I G
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---------DGMVSIDGQDIRT 456
Query: 258 VQETFARVSGYCEQTDIHSPQITV--EESVIFSAWLR--LAPEINSKTKAEFVN-----E 308
+ + R I V +E V+F+ + + T E
Sbjct: 457 INVRYLR------------EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 309 VLETIEL--DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+ I D+LVG G LS Q++R+ IA LV NP I+ +DE T+ LD +
Sbjct: 505 AYDFIMKLPHQF-DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 367 AIIMRAVKNVVDTGRTIVCTIHQPS 391
A++ A+ GRT + H+ S
Sbjct: 563 AVVQAALDKAR-EGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPKVQ 259
L ++ ++ G AL+G SG GK+T++ D +AG + + G ++
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKE-IK 1098
Query: 260 ETFARVSGYCEQTDIHS--P---QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 314
+ V Q I S P ++ E++ + R+ A+ N + + I+
Sbjct: 1099 Q--LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN-IHQFID 1155
Query: 315 -L-DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
L D ++ VG G LS Q++R+ IA LV P I+ +DE T+ LD + ++ A
Sbjct: 1156 SLPDKY-NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213
Query: 373 VKNVVDTGRTIVCTIH 388
+ GRT + H
Sbjct: 1214 LDKAR-EGRTCIVIAH 1228
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 44/202 (21%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYP--K 257
L DV+ ++ PG AL+G SGAGK+T+L D+ +G I+I G +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 258 V-QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL----------APEINSKTKAEFV 306
V Q + G Q ++V+F+ + E+ + +A +
Sbjct: 121 VTQASLRSHIGVVPQ-----------DTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
++ + +G + VG G+ LS +++R+ IA ++ P II +DE T+ LD
Sbjct: 170 HDAIMAFP-EGY-RTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 367 AIIMRAVKNVVDTGRTIVCTIH 388
I ++ V RT + H
Sbjct: 227 RAIQASLAKVC-ANRTTIVVAH 247
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 53.6 bits (130), Expect = 2e-08
Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 54/207 (26%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYP--K 257
L ++ S++ G + ++G SG+GK+TL G+ + I G+
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLIDGHDLAL 75
Query: 258 V-------------QET--FAR-VSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKT 301
Q+ R + + + +P ++VE+ VI++A +LA +
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSII---DNISLANPGMSVEK-VIYAA--KLA---GA-- 124
Query: 302 KAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361
+F++E L +G +++VG G LS QR+R+ IA LV NP I+ DE T+ L
Sbjct: 125 -HDFISE-LR----EGY-NTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSAL 176
Query: 362 DARAAAIIMRAVKNVVDTGRTIVCTIH 388
D + +IMR + + GRT++ H
Sbjct: 177 DYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 43/175 (24%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFARVS 266
D++ SL PG + ++G SG GKTTLL LAG + GEI + G +
Sbjct: 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD----SGEISLSG--------KTIF 69
Query: 267 GYCEQTDIHS-------------PQITVEESVIFSAWLRL----APEINSKTKAEFVNEV 309
+ P +TV ++ + L + + + +
Sbjct: 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQR-----IEAM 122
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
LE + + P + LS Q++R +A L +P +I +DEP + LD +
Sbjct: 123 LELTGISELAGRY---P--HELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 36/159 (22%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQT------DIH 275
++G SGAGKTT + ++AG + GE+ V+ + I
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPST--GELYFDD--------RLVASNGKLIVPPEDRKIG 85
Query: 276 S--------PQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDGIKDSLVGI 325
P +T E++ F EI + V EV + +++ + +
Sbjct: 86 MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKILDIHHVLNHF--- 137
Query: 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
P LS Q++R+ +A LV +PS++ +DEP + LDAR
Sbjct: 138 PR--ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 53/201 (26%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSM------EGEIKIGGYPKVQE 260
L V+ S+ G AL+G SG+GK+T+ ++ G I + G+ V++
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF--------TRFYDVDSGSICLDGHD-VRD 409
Query: 261 --------TFARVSGYCEQTDIHSPQITVEESVIFS---------AWLRLAP--EINSKT 301
FA VS Q +F+ A +I
Sbjct: 410 YKLTNLRRHFALVS-----------Q----NVHLFNDTIANNIAYAAEGEYTREQIEQAA 454
Query: 302 KAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361
+ E +E + G+ D+++G G + LS QR+R+ IA L+ + ++ +DE T+ L
Sbjct: 455 RQAHAMEFIENMP-QGL-DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSAL 511
Query: 362 DARAAAIIMRAVKNVVDTGRT 382
D + I A+ + +T
Sbjct: 512 DTESERAIQAALDELQ-KNKT 531
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 8e-08
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 49/198 (24%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPKVQ 259
L + + G AL+G +G+GK+T+ D EG+IKIGG +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----------EGDIKIGGKNVNK 85
Query: 260 ETFARVSGYCEQTDIHS-----PQITVEESVIFSAWLR--LA--------PEINSKTKAE 304
+ I S PQ ++++F+ ++ + E+ TK+
Sbjct: 86 YN---------RNSIRSIIGIVPQ----DTILFNETIKYNILYGKLDATDEEVIKATKSA 132
Query: 305 FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
+ + +E + D++VG G+ LS +R+R+ IA L+ +P I+ DE T+ LD++
Sbjct: 133 QLYDFIEALP-KKW-DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189
Query: 365 AAAIIMRAVKNVVDTGRT 382
+ +AV+++ RT
Sbjct: 190 TEYLFQKAVEDLR-KNRT 206
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 8e-08
Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 14/146 (9%)
Query: 268 YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPG 327
++ + +A ++ + + E + + +
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVW 239
Query: 328 VNG------LSTEQRKRLTIAVEL------VANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
LS +R L +A L S++ +DEPT LD ++ ++
Sbjct: 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299
Query: 376 VVDTGRTIVCTIHQPSIDIFEAFDEV 401
+ ++ H ++ +A D V
Sbjct: 300 YLKKIPQVILVSHDE--ELKDAADHV 323
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 37/193 (19%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR--KTTGSMEGEIKIGGYPKVQETFAR 264
L ++ + G AL+G SG+GK+T+ ++ R EG I + G+
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDID---EGHILMDGHD-------- 406
Query: 265 VSGYCEQTDIHS--PQITV--EESVIFS-------AWLRLAP----EINSKTKAEFVNEV 309
+ + S Q+ + + +F+ A+ R +I + + +
Sbjct: 407 ----LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDF 462
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369
+ ++ +G+ D+++G GV LS QR+R+ IA L+ + I+ +DE T+ LD + I
Sbjct: 463 INKMD-NGL-DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 370 MRAVKNVVDTGRT 382
A+ + RT
Sbjct: 520 QAALDELQ-KNRT 531
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 50/175 (28%)
Query: 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT-TGSMEGEIKIGGYPKVQETFARVSG 267
+++ + G ++G +GAGKT L+++AG G I + G
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDG------------- 61
Query: 268 YCEQTDIHS------------------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEV 309
D+ P + V++++ F ++ + V +
Sbjct: 62 ----KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK------DPKRVLDT 111
Query: 310 LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
++++ + D LS +++R+ +A LV NP I+ +DEP + LD R
Sbjct: 112 ARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 46/197 (23%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFAR 264
L D+ + G L A+ G +GAGKT+LL ++ G + EG+IK G R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 265 VSGYCEQTDIHSPQI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD- 320
+S +C Q I T++E++I ++ V++ +L+ +D
Sbjct: 101 IS-FCSQN----SWIMPGTIKENIIGVSY-----------DEYRYRSVIKACQLE--EDI 142
Query: 321 --------SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
++G G+ LS QR R+++A + + + +D P LD I +
Sbjct: 143 SKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
Query: 373 VKNVVDTGRTIVCTIHQ 389
+ +T + +
Sbjct: 202 CVCKLMANKTRILVTSK 218
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 6e-07
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 45/197 (22%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFAR 264
L D+ + G L A+ G +GAGKT+LL ++ G + EG+IK G R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 265 VSGYCEQTDIHSPQI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD- 320
+S +C Q I T++E++IF V++ +L+ +D
Sbjct: 71 IS-FCSQF----SWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLE--EDI 113
Query: 321 --------SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
++G G+ LS QR R+++A + + + +D P LD I +
Sbjct: 114 SKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 373 VKNVVDTGRTIVCTIHQ 389
+ +T + +
Sbjct: 173 CVCKLMANKTRILVTSK 189
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 9e-07
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 53/202 (26%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFAR 264
L +T S+ G L A++G G GK++LL L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 265 VSGYCEQTDIHSPQI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD- 320
V+ Y Q I ++ E+++F + + + V++ L D
Sbjct: 68 VA-YVPQQ----AWIQNDSLRENILF----------GCQLEEPYYRSVIQACALL--PDL 110
Query: 321 --------SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
+ +G GVN LS Q++R+++A + +N I D+P + +DA I
Sbjct: 111 EILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF-- 167
Query: 373 VKNVVDT-----GRTIVCTIHQ 389
+NV+ +T + H
Sbjct: 168 -ENVIGPKGMLKNKTRILVTHS 188
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-06
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 44/168 (26%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS----- 276
L+G SG+GK+TLL +AG S G+I V T++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTS--GKIYFDE--------KDV------TELPPKDRNV 77
Query: 277 ----------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
P +TV +++ F LR AP + E +V E ++ I L P
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFPLELRKAP------REEIDKKVREVAKMLHIDKLLNRYP 131
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA--RAAAIIMRA 372
LS Q++R+ IA LV P ++ +DEP + LDA R +RA
Sbjct: 132 W--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379
D+ VG GV LS Q++RL+IA + NP I+ +DE T+ LD + +II A+ +
Sbjct: 468 DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK- 525
Query: 380 GRT 382
RT
Sbjct: 526 DRT 528
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 51/214 (23%), Positives = 82/214 (38%), Gaps = 67/214 (31%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLL-------DVLAGRKTTGSMEGEIKIGGYPKVQ 259
L V S++PG L A++G +G+GK+TL+ D G +++ V+
Sbjct: 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---------ERGRVEVDELD-VR 408
Query: 260 ETFARVSGYCEQTDIHS-----PQITVEESVIFS-------AW---------LRLAPEIN 298
+ D+ PQ E+V+FS W + A +I
Sbjct: 409 T--------VKLKDLRGHISAVPQ----ETVLFSGTIKENLKWGREDATDDEIVEAAKI- 455
Query: 299 SKTKA---EFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 355
A +F+ L DS V G N S Q++RL+IA LV P ++ +D
Sbjct: 456 ----AQIHDFIIS------LPEGYDSRVERGGRN-FSGGQKQRLSIARALVKKPKVLILD 504
Query: 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389
+ T+ +D I+ +K T I Q
Sbjct: 505 DCTSSVDPITEKRILDGLKR--YTKGCTTFIITQ 536
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 27/195 (13%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSME-GEIKIGGYPKVQETFA 263
L +V+ + G + ++G SGAGK+TL+ + R T GS+ ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 264 RVSGYCEQTDI-----H---SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
R I H TV +V E+++ K E V E + L
Sbjct: 104 R-------RQIGMIFQHFNLLSSRTVFGNVAL------PLELDNTPKDEVKRRVTELLSL 150
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
G+ D P + LS Q++R+ IA L +NP ++ D+ T+ LD I+ +K+
Sbjct: 151 VGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 376 VVDT-GRTIVCTIHQ 389
+ G TI+ H+
Sbjct: 209 INRRLGLTILLITHE 223
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 40/198 (20%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSM--EGEIKIGGYPKV 258
+ + + + G + L+G +GAGKTT L +AG R G + G+ I P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ-DITNKP-- 74
Query: 259 QETFARVS-GYCEQTDIHSPQ-------ITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
G P+ +TV E+++ A+ R K K + L
Sbjct: 75 --AHVINRMGIA-----LVPEGRRIFPELTVYENLMMGAYNR-------KDKEG-IKRDL 119
Query: 311 ETI-----ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 365
E I L L G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 120 EWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
Query: 366 AAIIMRAVKNVVDTGRTI 383
+ + ++ + G TI
Sbjct: 175 VSEVFEVIQKINQEGTTI 192
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 50/168 (29%), Positives = 64/168 (38%), Gaps = 44/168 (26%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS----- 276
L+G SG GKTT L +LAG S GEI V DI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPTS--GEIYFDD--------VLV------NDIPPKYREV 77
Query: 277 ----------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
P +TV E++ F R K E V+E I + L P
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRARRIS------KDEVEKRVVEIARKLLIDNLLDRKP 131
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA--RAAAIIMRA 372
LS Q++R+ +A LV P ++ DEP + LDA R MRA
Sbjct: 132 T--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 46/172 (26%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS----- 276
L+G SG GKTT L ++AG + G+I IG V+ + +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSR--GQIYIGD--------KLVADPEKGIFVPPKDRDI 83
Query: 277 ----------PQITVEESVIFSAWLRLA----PEINSKTKAEFVNEVLETIELDGIKDSL 322
P +TV +++ F L+L EI+ + V EV E + L + +
Sbjct: 84 AMVFQSYALYPHMTVYDNIAFP--LKLRKVPRQEIDQR-----VREVAELLGLTELLNRK 136
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA--RAAAIIMRA 372
P LS QR+R+ + +V P + MDEP + LDA R MRA
Sbjct: 137 ---PR--ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 50/168 (29%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS----- 276
L+G SG GKTT L ++AG + G I G V T +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTE--GRIYFGD--------RDV------TYLPPKDRNI 85
Query: 277 ----------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
P +TV E++ F ++ P K E V EL I++ L P
Sbjct: 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFP------KDEIDKRVRWAAELLQIEELLNRYP 139
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA--RAAAIIMRA 372
LS QR+R+ +A +V P ++ MDEP + LDA R A MRA
Sbjct: 140 A--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 320 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD- 378
D+ VG G LS QR+ + +A L+ P ++ +D T+ LDA + R + +
Sbjct: 147 DTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW 205
Query: 379 TGRTIVCTIH 388
RT++
Sbjct: 206 ASRTVLLITQ 215
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFE 396
RL +++ L S++ +DEPT LD ++ ++ + ++ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 397 AFDEV 401
A D V
Sbjct: 128 AADHV 132
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 53/203 (26%), Positives = 80/203 (39%), Gaps = 53/203 (26%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG------------------ 254
+ G + ALMG +GAGK+TL +LAG GEI + G
Sbjct: 25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFL 84
Query: 255 ---YPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTK-----AEFV 306
YP ++ P +T+ F LRLA + +K AEF
Sbjct: 85 AFQYP---------------VEV--PGVTIAN---F---LRLA--LQAKLGREVGVAEFW 119
Query: 307 NEVLETIELDGIKDSLVGIPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 365
+V + +EL +S + +N G S ++KR I LV P+ +DE +GLD A
Sbjct: 120 TKVKKALELLDWDESYLSRY-LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA 178
Query: 366 AAIIMRAVKNVVDTGRTIVCTIH 388
++ R V + + H
Sbjct: 179 LKVVARGVNAMRGPNFGALVITH 201
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 28/204 (13%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-KVQET 261
+L V+ R G + +++G SG+GK+T L + + G I + G +
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE--GAIIVNGQNINLVRD 75
Query: 262 FARVSGYCEQTDIHS---------------PQITVEESVIFSAWLRLAP-EINSKTKAEF 305
++ + +TV E+V+ AP ++ +K +
Sbjct: 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM------EAPIQVLGLSKHDA 129
Query: 306 VNEVLETIELDGIKDSLVGI-PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364
L+ + GI + G P LS Q++R++IA L P ++ DEPT+ LD
Sbjct: 130 RERALKYLAKVGIDERAQGKYPVH--LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 365 AAAIIMRAVKNVVDTGRTIVCTIH 388
++R ++ + + G+T+V H
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 36/176 (20%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF 262
L +L + +R G + ++G SG+GK+T L L + GEI I G +
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE--GEIIIDGINLKAK-- 91
Query: 263 ARVSGYCEQTDIHS---------------PQITVEESVIFSAWLRLAP-EINSKTKAEFV 306
T+++ P +TV ++ LAP ++ + +
Sbjct: 92 --------DTNLNKVREEVGMVFQRFNLFPHMTVLNNIT------LAPMKVRKWPREKAE 137
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362
+ +E ++ G+KD P LS Q +R+ IA L P I+ DEPT+ LD
Sbjct: 138 AKAMELLDKVGLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 52/172 (30%)
Query: 222 LMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS----- 276
+G SG GK+TLL ++AG +T S G++ IG R+ D
Sbjct: 34 FVGPSGCGKSTLLRMIAGLETITS--GDLFIGE--------KRM------NDTPPAERGV 77
Query: 277 ----------PQITVEESVIFSAWLRLA----PEINSKTKAEFVNEVLETIELDGIKDSL 322
P ++V E++ F L+LA IN + VN+V E ++L + D
Sbjct: 78 GMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVINQR-----VNQVAEVLQLAHLLDRK 130
Query: 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA--RAAAIIMRA 372
P LS QR+R+ I LVA PS+ +DEP + LDA R MR
Sbjct: 131 ---PK--ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ---MRI 174
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 57/207 (27%)
Query: 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG------------------ 254
+ PG + A+MG +G+GK+TL LAGR+ G ++ G
Sbjct: 42 DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFM 101
Query: 255 ---YPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA-------- 303
YP +I P ++ + F L+ A +N+
Sbjct: 102 AFQYP---------------VEI--PGVSNQF---F---LQTA--LNAVRSYRGQETLDR 136
Query: 304 -EFVNEVLETIELDGIKDSLVGIPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361
+F + + E I L + + L+ VN G S ++KR I V P + +DE +GL
Sbjct: 137 FDFQDLMEEKIALLKMPEDLLTRS-VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 195
Query: 362 DARAAAIIMRAVKNVVDTGRTIVCTIH 388
D A ++ V ++ D R+ + H
Sbjct: 196 DIDALKVVADGVNSLRDGKRSFIIVTH 222
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 404 | |||
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.98 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.94 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.94 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.92 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.9 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.88 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.88 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.88 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.87 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.87 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.85 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.85 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.85 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.84 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.82 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.82 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.82 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.81 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.8 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.8 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.79 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.78 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.78 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.77 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.77 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.77 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.77 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.76 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.76 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.76 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.76 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.76 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.75 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.71 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.71 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.71 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.71 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.7 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.7 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.7 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.69 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.68 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.68 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.67 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.63 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.62 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.61 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.61 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.59 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.59 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.57 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.57 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.55 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.54 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.53 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.52 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.52 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.5 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.49 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.49 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.48 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.48 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.47 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.46 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.46 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.45 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.43 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.4 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.39 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.35 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.32 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.32 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.31 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.27 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.25 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.23 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.17 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.13 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.11 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.1 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.09 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.09 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.09 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.06 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.03 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.02 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.99 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.97 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.96 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.96 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.91 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.9 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.88 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.88 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.76 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.71 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.7 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.68 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.61 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.58 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.57 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.5 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.48 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.44 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.43 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.43 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.39 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.36 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.36 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.35 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.35 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.3 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.29 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.29 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.25 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.23 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.21 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.19 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.18 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.14 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.09 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.07 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.02 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.01 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.97 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.96 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.94 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.92 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.9 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.9 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.9 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.88 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.86 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.83 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.82 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.78 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.76 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.76 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.74 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.74 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.69 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.63 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.59 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.59 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.51 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.47 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.46 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.45 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.44 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.43 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.42 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.42 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.4 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.39 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.39 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.36 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.36 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.36 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.35 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.33 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.28 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.27 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.27 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.26 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.23 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.18 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.15 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.14 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.1 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 97.09 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 97.09 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.08 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.08 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.06 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.04 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.99 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.99 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.98 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.98 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.95 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.92 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.87 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.84 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.83 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.77 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.77 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.76 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.76 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.74 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.7 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.64 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.61 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.6 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.59 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.56 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.55 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.54 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.53 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.51 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.51 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 96.5 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.5 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.49 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.49 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.46 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.45 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.44 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.43 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.43 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.42 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.41 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.4 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.38 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.37 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.35 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.3 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.29 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.27 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.25 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.23 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.21 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.19 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.14 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.1 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.08 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.07 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.07 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.06 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.02 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.02 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.0 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.95 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.95 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.94 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.93 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.93 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.93 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.91 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.89 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.89 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.89 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.89 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.88 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.88 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.88 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.85 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.84 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.84 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.82 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.82 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.82 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.81 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.81 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.8 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.8 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.8 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.79 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.79 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.79 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.78 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.77 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.76 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.74 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.74 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.73 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.73 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.73 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.72 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.71 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.71 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.69 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.69 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.68 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.68 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.65 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.64 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.64 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.64 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.62 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.57 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.56 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.54 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.53 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.52 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.51 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.5 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.5 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.49 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.48 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.47 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.47 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.46 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.46 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.46 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.43 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.43 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.42 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.42 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.41 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.4 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.4 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.39 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.38 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.37 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.35 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.34 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.33 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.32 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.32 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.29 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.29 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.28 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.27 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.27 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.27 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.24 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.24 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.24 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.23 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.23 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.23 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.22 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.22 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.21 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.2 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.19 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.19 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.18 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.18 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.17 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.16 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.16 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.16 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.16 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.16 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.15 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.14 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.14 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.13 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.13 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.12 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.1 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.08 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.08 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.08 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.07 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.04 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.04 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.02 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.02 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.01 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.01 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.98 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.98 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 94.97 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.97 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.97 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.96 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.96 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.96 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.95 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.95 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.94 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.94 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.93 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.92 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.91 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.9 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.89 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.89 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.88 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.86 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 94.86 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.85 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.85 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.82 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.81 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.79 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.78 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 94.78 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 94.76 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.76 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.76 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.72 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 94.72 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.65 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.65 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.61 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.6 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.54 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.53 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.53 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.51 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 94.5 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 94.49 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.44 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.43 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 94.41 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.26 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 94.26 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.26 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.21 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 94.19 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.18 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.11 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.06 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.01 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.0 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 93.99 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 93.91 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 93.75 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 93.7 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 93.64 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 93.55 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 93.39 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 93.36 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 93.33 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.32 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 93.31 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.39 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 93.22 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 93.22 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.22 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 93.18 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 93.17 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 93.15 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 93.15 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 93.14 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 93.13 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 93.13 |
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=367.46 Aligned_cols=207 Identities=25% Similarity=0.358 Sum_probs=172.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ...+++|+||||++++||++||+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT--EGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ceEEEECCEEcc
Confidence 6789999988421 11256999999999999999999999999999999999998874 699999998753
Q ss_pred h---hh----hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccccccCCCCCC
Q 015591 259 Q---ET----FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDSLVGIPGVNG 330 (404)
Q Consensus 259 ~---~~----~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~ 330 (404)
. .. .++.+|||+|++.+++.+||+||+.++...+........+..+.+.++++.+++.+. .+... .+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hh
Confidence 2 11 234699999999999999999999997654322223344556778899999999764 35553 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ +.+.+|++++
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~ 217 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIY 217 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 4588999875
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=385.50 Aligned_cols=206 Identities=23% Similarity=0.293 Sum_probs=179.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|... .+..++|+||||+|++||++||+||||||||||+|+|+|+.+|. +|+|.++|+++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~--~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--EGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 49999999988521 12357999999999999999999999999999999999998874 69999999885
Q ss_pred ch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 VQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
.. ...++.+|||+|++.+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 42 1246789999999999999999999999876542 334556678999999999988777764 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||+|||||+.+|++|||||||||||+.++..|++.|+++++ .|+|||++||+++ ++..+||++++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~v 236 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAV 236 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999975 4999999999997 68889999875
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-48 Score=360.97 Aligned_cols=201 Identities=24% Similarity=0.309 Sum_probs=172.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|+++.|. ++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT--EGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 388999998772 367999999999999999999999999999999999998764 69999999875
Q ss_pred chh------hhc-ceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQE------TFA-RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~------~~~-~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
... .++ +.++||+|++.+++.+||+||+.++...+. ....+..+.++++++.+++.+..++..+ +
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKPY-----E 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGG-----G
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 321 122 579999999888899999999999764432 2233445678899999999888777653 7
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+ ..||+++.
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~ 211 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLE 211 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEE
Confidence 9999999999999999999999999999999999999999999999877999999999976 34 88999875
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-48 Score=373.06 Aligned_cols=203 Identities=25% Similarity=0.339 Sum_probs=174.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ ++..+|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|+++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~--~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS--SGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CeEEEECCEEC
Confidence 489999999873 1245999999999999999999999999999999999998764 69999999886
Q ss_pred c--h---hhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 V--Q---ETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~--~---~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. . ..+++.+|||+|++ ..++.+||+||+.|+.... .....+..++++++++.+++.+..++..+ +|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 2 1 23567899999985 3456889999999986543 23345556788999999999888887754 79
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ ++...||++++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~ 216 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFV 216 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 67788999875
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-48 Score=368.24 Aligned_cols=202 Identities=26% Similarity=0.345 Sum_probs=173.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 24 ~l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~--~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEES
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC--CcEEEECCEEC
Confidence 38999999977 2457999999999999999999999999999999999998764 69999999875
Q ss_pred c-----hhhhcceeEEeecCCCCCCCCCHHHHHHHHh-hhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 V-----QETFARVSGYCEQTDIHSPQITVEESVIFSA-WLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~-----~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. ...+++.++||+|++.+++.+||+||+.|+. ... .....+..+.++++++.+++.+..++.. .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1234567999999988889999999999964 222 1223344567889999999988777764 379
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 231 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLF 231 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 57788999875
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=368.54 Aligned_cols=201 Identities=22% Similarity=0.277 Sum_probs=173.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 7 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~--~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEECC
T ss_pred EEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEcc
Confidence 8899999877 2457999999999999999999999999999999999998764 699999998764
Q ss_pred h----------------hhhcceeEEeecCCCCCCCCCHHHHHHHHh-hhhcCccCChhhHHHHHHHHHHHcCCCCC-cc
Q 015591 259 Q----------------ETFARVSGYCEQTDIHSPQITVEESVIFSA-WLRLAPEINSKTKAEFVNEVLETIELDGI-KD 320 (404)
Q Consensus 259 ~----------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~ 320 (404)
. ..+++.+|||+|++.+++.+||+||+.++. ..+ .....+..+.++++++.+++.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 134567999999988889999999999864 222 12233445678899999999877 77
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccc
Q 015591 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 321 ~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~ 400 (404)
+.. .+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+
T Consensus 149 ~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 664 479999999999999999999999999999999999999999999999877999999999986 67789999
Q ss_pred ccc
Q 015591 401 VKQ 403 (404)
Q Consensus 401 ~l~ 403 (404)
+++
T Consensus 223 v~~ 225 (262)
T 1b0u_A 223 VIF 225 (262)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-48 Score=383.79 Aligned_cols=203 Identities=25% Similarity=0.382 Sum_probs=176.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++
T Consensus 4 ~l~i~~ls~~y-------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSF-------------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS--EEEEEETTEEE
T ss_pred EEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 37889999877 3467999999999999999999999999999999999998874 69999999875
Q ss_pred ----ch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 258 ----VQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ----~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
.. ...++.+|||+|+..++|.+||+||+.|+...+. ...++..++++++++.++|.+..++.. .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 11 2345779999999999999999999999865432 234455678899999999998888775 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||+|||||+.+|++|||||||||||+..+..+++.|+++. +.|+|+|++|||++ ++..++|+++++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl 212 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVM 212 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEE
Confidence 999999999999999999999999999999999999999888875 46999999999997 788999998753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-48 Score=384.90 Aligned_cols=202 Identities=27% Similarity=0.386 Sum_probs=178.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| ++..+|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT--SGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC--CeEEEECCEECC
Confidence 7889999877 3467999999999999999999999999999999999998874 699999998864
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|+..++|.+||+||+.|+...+. ...++..++++++++.++|.+..++.. .+|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHH
Confidence 3 2335679999999999999999999999876542 344556678999999999998888765 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||+.+|++||||||||+||+..+.++++.|+++.++ |+|+|++|||++ ++..++|+++++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl 207 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVL 207 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999765 999999999997 789999998763
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=367.62 Aligned_cols=205 Identities=24% Similarity=0.315 Sum_probs=173.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 7 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~--~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred EEEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEC
Confidence 48999999977 2457999999999999999999999999999999999998764 69999999876
Q ss_pred ch----hhhcceeEEeecCCCCCCCCCHHHHHHHHhhh-hcCc---------cCChhhHHHHHHHHHHHcCCCCCccccc
Q 015591 258 VQ----ETFARVSGYCEQTDIHSPQITVEESVIFSAWL-RLAP---------EINSKTKAEFVNEVLETIELDGIKDSLV 323 (404)
Q Consensus 258 ~~----~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~l~l~~~~~~~v 323 (404)
.. ...++.++||+|++.+++.+||+||+.++... +... .....+..+.++++++.+++.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 32 22356799999998888889999999987532 1110 0122334567889999999988777775
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+ +||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++
T Consensus 152 ~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 4 79999999999999999999999999999999999999999999999877999999999997 57788999875
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=364.37 Aligned_cols=202 Identities=25% Similarity=0.312 Sum_probs=174.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 15 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEET
T ss_pred eEEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEC
Confidence 38999999977 2467999999999999999999999999999999999998764 69999999875
Q ss_pred ch--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 258 VQ--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
.. ...++.+||++|++.+++.+||+||+.+...... ....+..+.++++++.+++.+..++.++ +|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHH
Confidence 32 3356779999999888899999999999754432 2223334668899999999887777653 799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||+++.
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~ 218 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIAL 218 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEE
Confidence 99999999999999999999999999999999999999999877999999999986 56778999875
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=360.09 Aligned_cols=201 Identities=20% Similarity=0.299 Sum_probs=170.6
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ--KGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEC
Confidence 488999999772 357999999999999999999999999999999999998764 69999999876
Q ss_pred ch---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-CCCCccccccCCCCCCCC
Q 015591 258 VQ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-LDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 258 ~~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~vg~~~~~~LS 332 (404)
.. .. .++.++|++|++.+++.+||+||+.++.... ....+..+.++++++.++ +.+..++.. .+||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 32 12 2445999999988889999999999864211 112234466788899884 877766664 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++.
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~ 211 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYV 211 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999777999999999986 67889999875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-47 Score=363.94 Aligned_cols=200 Identities=22% Similarity=0.318 Sum_probs=174.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++++|+||||++++||++||+||||||||||+|+|+|+.+|. +|+|.++|+++
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--HGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS--SCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 48999999977 3467999999999999999999999999999999999998874 59999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
.. ...++.++|++|++.+++.+||+||+.++.... ...+..+.++++++.+++.+..++..+ +||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 42 345567999999988888999999999975432 123345678899999999988887754 69999
Q ss_pred HHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVA------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++|||++ ++...||++++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~v 220 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIML 220 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEE
Confidence 9999999999999 99999999999999999999999999999765 679999999997 67889999875
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-47 Score=376.21 Aligned_cols=201 Identities=25% Similarity=0.346 Sum_probs=175.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT--SGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC--ceEEEECCEECC
Confidence 7888888866 3456999999999999999999999999999999999998874 699999998764
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 2 2235679999999999999999999999865432 233445677899999999998888775 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||+.+|++|||||||||||+..+..+.+.|+++.++ |+|+|++|||++ ++..++|++++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~v 206 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAV 206 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999754 999999999986 78899999875
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=376.41 Aligned_cols=201 Identities=28% Similarity=0.373 Sum_probs=174.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYF-------------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT--SGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC--ccEEEECCEECC
Confidence 7888999876 3467999999999999999999999999999999999998874 699999998764
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR---ISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC---SHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2 2235679999999999999999999999754321 122333467899999999988887764 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||||||+..+..+++.|+++.++ |.|+|++|||++ ++..++|++++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~v 206 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAV 206 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999754 999999999986 68889999875
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-47 Score=376.76 Aligned_cols=201 Identities=25% Similarity=0.354 Sum_probs=175.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS--RGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEEEETTEEEE
T ss_pred EEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC--ccEEEECCEECc
Confidence 7889999876 3467999999999999999999999999999999999998874 699999998753
Q ss_pred h-------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 259 Q-------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 259 ~-------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 2235679999999999999999999999865432 233445677899999999988887764 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||+|||||+.+|++||||||||+||+..+..+++.|+++.++ |.|+|++|||++ ++..++|++++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~v 212 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAV 212 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999754 999999999986 78889999875
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-47 Score=352.05 Aligned_cols=196 Identities=19% Similarity=0.297 Sum_probs=170.0
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| ++ ++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~--~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL--KGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEEG
T ss_pred eEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEh
Confidence 58999999876 34 6999999999999999999999999999999999998764 69999999876
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ..++.++||+|++.+++.+||+||+.++...+.. ..+ .+.++++++.+++.+. ++.. .+|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~----~~~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV----KVN-KNEIMDALESVEVLDL-KKKL-----GELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC----CCC-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC----chH-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHH
Confidence 4 3567899999998888889999999987543221 112 4567889999999877 6654 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~ 205 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHK 205 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGG
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999766899999999998 57778898875
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=375.48 Aligned_cols=204 Identities=26% Similarity=0.382 Sum_probs=177.2
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||++.|+ +++++|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|++
T Consensus 13 ~~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~ 78 (355)
T 1z47_A 13 MTIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT--KGDVWIGGKR 78 (355)
T ss_dssp EEEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEEEETTEE
T ss_pred ceEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEEECCEE
Confidence 3589999998661 2346999999999999999999999999999999999998874 6999999987
Q ss_pred Cch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 257 KVQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 257 ~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
+.. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|||||
T Consensus 79 i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq 150 (355)
T 1z47_A 79 VTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQ 150 (355)
T ss_dssp CTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHH
T ss_pred CCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHH
Confidence 642 2346789999999999999999999999865432 233445678899999999988888765 4799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||||||+.++..+++.|+++.++ |+|+|++|||++ ++..++|++++
T Consensus 151 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~v 218 (355)
T 1z47_A 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLV 218 (355)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999754 999999999986 78889999875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=376.61 Aligned_cols=201 Identities=27% Similarity=0.383 Sum_probs=175.2
Q ss_pred EEEeceeEEeeccccccccccccCcee--eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLR--LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
++++||++.|. +++ +|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|++
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS--TGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS--EEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEE
Confidence 78899998773 345 999999999999999999999999999999999998874 6999999987
Q ss_pred Cch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 257 KVQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 257 ~~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
+.. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 2346789999999999999999999999764331 233445677899999999998888765 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||||+|||||+.+|++|||||||||||+..+..+++.|+++.++ |+|+|++|||++ ++..++|++++
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~v 213 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGV 213 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999754 999999999986 78899999875
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-47 Score=376.25 Aligned_cols=201 Identities=23% Similarity=0.340 Sum_probs=169.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--ceEEEECCEECC
Confidence 8999999977 2467999999999999999999999999999999999998874 699999998764
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|+..+++.+||+||+.|+...+. ....+..++++++++.++|.+..++.. .+|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK---FPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC--C---CCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 2 2235679999999999999999999999754331 233445677899999999988877764 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||+|||||+.+|++||||||||+||+..+..+++.|+++.++ |.|+|++|||++ ++..++|++++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~v 214 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAV 214 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999765 999999999986 78899999875
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=359.58 Aligned_cols=202 Identities=24% Similarity=0.324 Sum_probs=170.5
Q ss_pred EEEeceeEEeeccccccccccccCc---eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKK---LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
++++||++.|.. ++ +++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.
T Consensus 3 l~~~~l~~~y~~-----------~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~--~G~I~~~g~ 69 (266)
T 2yz2_A 3 IEVVNVSHIFHR-----------GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT--SGDVLYDGE 69 (266)
T ss_dssp EEEEEEEEEEST-----------TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTE
T ss_pred EEEEEEEEEecC-----------CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEECCE
Confidence 788999987731 12 56999999999999999999999999999999999998764 699999998
Q ss_pred cCchhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC--CCccccccCCCCCCCC
Q 015591 256 PKVQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD--GIKDSLVGIPGVNGLS 332 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~vg~~~~~~LS 332 (404)
++....+++.+|||+|++ ..++.+||+||+.++.... ....+..++++++++.+++. +..++.. .+||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 140 (266)
T 2yz2_A 70 RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLS 140 (266)
T ss_dssp ECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSC
T ss_pred ECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCC
Confidence 764334567799999984 4567899999999865322 11122245678999999998 7777764 3799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|+++.
T Consensus 141 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~ 210 (266)
T 2yz2_A 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVV 210 (266)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999767999999999997 56778999875
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=371.42 Aligned_cols=197 Identities=20% Similarity=0.319 Sum_probs=171.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| +++ +|+|+||++++||+++|+||||||||||||+|+|+.+|. +|+|.++|+++.
T Consensus 2 l~~~~l~~~y-------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC--CcEEEECCEECC
Confidence 5778888866 345 999999999999999999999999999999999998874 699999998764
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|+..+++.+||+||+.|+...+.. ... ++++++++.++|.+..++.. .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2 23456799999999999999999999998654421 111 66889999999998888775 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||||||+.++..+.+.|+++.+ .|+|+|++|||++ ++..++|++++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~v 200 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAV 200 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999975 4999999999986 78899999875
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=355.14 Aligned_cols=204 Identities=25% Similarity=0.296 Sum_probs=163.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceeeEEEECCcc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR--KTTGSMEGEIKIGGYP 256 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~--~~~~~~~G~I~i~G~~ 256 (404)
++++||++.| +++++|+||||++++||+++|+||||||||||+|+|+|+ .+| .+|+|.++|.+
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p--~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV--ERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE--EEEEEEETTEE
T ss_pred EEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCEE
Confidence 7889999877 236799999999999999999999999999999999998 443 57999999987
Q ss_pred Cch---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCC-
Q 015591 257 KVQ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNG- 330 (404)
Q Consensus 257 ~~~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~- 330 (404)
+.. .. .++.++|++|++.+++.+||+||+.++............+..+.++++++.+++. +..++.+ .+
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccC
Confidence 532 12 2345899999988889999999999865321111112223346688999999994 6677664 35
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh-cccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA-FDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~-fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|+++.
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~ 216 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHV 216 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEE
Confidence 9999999999999999999999999999999999999999999999767999999999987 45556 598875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=365.84 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=163.7
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+ +++++|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~--~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS--SGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC--CcEEEECCEE
Confidence 3599999999873 2356999999999999999999999999999999999998874 6999999988
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcC-------CCCCccccccCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~vg~~ 326 (404)
+.. ..+++.++||+|++.++ ..||+||+.|+..... . +.++++++.++ +++..++.+++.
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~eNi~~~~~~~~-----~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAG-----N----DEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCC-SEEHHHHHHTTSTTCC-----H----HHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccC-cccHHHHHHhhcccCC-----H----HHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 642 45678899999987765 5699999998743211 1 11223333333 344567778876
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+. +||||||||++|||||+.+|+|||||||||+||+.++..|++.|+++. +++|+|+|||+++. +. .+|+++++
T Consensus 188 g~-~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~-~~-~aD~i~vl 261 (306)
T 3nh6_A 188 GL-KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-VV-NADQILVI 261 (306)
T ss_dssp SB-CCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHH-HH-TCSEEEEE
T ss_pred cC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHH-HH-cCCEEEEE
Confidence 54 699999999999999999999999999999999999999999999986 57999999999973 44 59999763
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=360.35 Aligned_cols=205 Identities=21% Similarity=0.335 Sum_probs=169.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|. ++++|+||||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.++
T Consensus 21 ~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT--SGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTBCC
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CeEEEECCEEc
Confidence 589999999772 357999999999999999999999999999999999998764 69999999875
Q ss_pred c-----hhhhcceeEEeecCCCCC--CCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 258 V-----QETFARVSGYCEQTDIHS--PQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 258 ~-----~~~~~~~~g~v~Q~~~~~--~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
. ...+++.++||+|++... +.+||+||+.++...... ......+..+.++++++.+++.+..++.++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG----- 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----
Confidence 4 233567799999976433 356999999986421100 001122335678899999999887777754
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE--EEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTI--VCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~ti--i~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||+++ ++...+|++++
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~ 235 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILL 235 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEE
Confidence 799999999999999999999999999999999999999999999997669999 99999997 57788999875
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-46 Score=351.52 Aligned_cols=196 Identities=21% Similarity=0.314 Sum_probs=167.5
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.| ++ +|+||||++++ |+++|+||||||||||+|+|+|+.+|. +|+|.++|.++.
T Consensus 2 l~~~~l~~~y-------------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRL-------------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEE-------------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEe-------------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECC
Confidence 5678888876 22 49999999999 999999999999999999999998764 699999998764
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|++.+++.+||+||+.|+...+. .....+.++++++.+++.+..++..+ +|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE-----RVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC-----HHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC-----CchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 2 2345679999999888899999999998643211 11225678899999999888777654 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|+++.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~ 199 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAV 199 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999754 999999999986 67889999875
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=348.06 Aligned_cols=196 Identities=22% Similarity=0.359 Sum_probs=165.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|.. ++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.
T Consensus 4 ~l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI--QGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS--EEEEE------
T ss_pred eEEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEE------
Confidence 3889999987720 356999999999999999999999999999999999998764 69997
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.++.++||+|++.+++.+||+||+.++....... ........+.++++++.+++.+..++.. .+||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 2456899999988888999999999975322100 0112233567889999999988777764 37999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|+++.
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~ 201 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLL 201 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999876 999999999986 57789999875
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=351.55 Aligned_cols=208 Identities=21% Similarity=0.288 Sum_probs=168.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| +++++|+||||++++||+++|+||||||||||+|+|+|+....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 48999999977 24679999999999999999999999999999999999842223579999999875
Q ss_pred ch---hhh-cceeEEeecCCCCCCCCCHHHHHHHHhh-hh---cCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCC
Q 015591 258 VQ---ETF-ARVSGYCEQTDIHSPQITVEESVIFSAW-LR---LAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGV 328 (404)
Q Consensus 258 ~~---~~~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~ 328 (404)
.. ... ++.++|++|++.+++.+||+||+.+... .+ ........+..+.++++++.+++. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 32 122 3458999999988999999999987542 11 111122233356788999999996 46666532
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHh-cccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEA-FDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~-fd~~l~ 403 (404)
.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++... +|++++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~ 237 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHV 237 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEE
Confidence 149999999999999999999999999999999999999999999998766999999999986 44454 898875
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=354.57 Aligned_cols=206 Identities=23% Similarity=0.299 Sum_probs=162.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.. +++++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~--~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT--GGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CCEEEECCEEc
Confidence 48999999976310 1256999999999999999999999999999999999998764 69999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHc--CCCCCccccccCCCCCCC
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETI--ELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l--~l~~~~~~~vg~~~~~~L 331 (404)
.. ..+++.++||+|++.+++ .||+||+.++...... ...........++++++.+ ++....+... .+|
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~L 157 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-----NQL 157 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-----TTS
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-----CCC
Confidence 32 334667999999887766 6999999986421110 0000111223356677777 5655555543 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++ .+ ..+|+++.
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~ 228 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILF 228 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEE
Confidence 99999999999999999999999999999999999999999999864 4999999999986 33 45999875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-45 Score=344.47 Aligned_cols=191 Identities=23% Similarity=0.336 Sum_probs=165.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++. ++|+|+||++++||+++|+||||||||||+|+|+|+.+| . |+|.++|.++.
T Consensus 5 l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGG
T ss_pred EEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECC
Confidence 778888862 489999999999999999999999999999999999875 5 99999998753
Q ss_pred ---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH
Q 015591 259 ---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 259 ---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 335 (404)
...+++.++|++|++.+++.+||+||+.++... ... .+.++++++.+++.+..++.. .+|||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq 131 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRST-----NQLSGGE 131 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 234566799999998888889999999985311 111 456788999999988777764 3799999
Q ss_pred HHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPS-------IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~-------iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++.
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~ 205 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWL 205 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999 99999999999999999999999999767999999999986 57789999875
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=345.93 Aligned_cols=200 Identities=24% Similarity=0.388 Sum_probs=161.8
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
.+++++||++.|+ .+++.+|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred CceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 4699999999762 12356999999999999999999999999999999999998764 6999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCc-------cccccCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIK-------DSLVGIP 326 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~vg~~ 326 (404)
+.. ..+++.++||+|++.+++ .||+||+.++.. ... .+.++++++.+++.+.. ++.++.+
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 532 345677999999887765 699999988531 111 23355666666665433 2333333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.+|++++
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~ 215 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIV 215 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEE
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEE
Confidence 35799999999999999999999999999999999999999999999995 69999999999873 4 46999875
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=342.39 Aligned_cols=198 Identities=26% Similarity=0.404 Sum_probs=162.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+ +++++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT--AGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS--BSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEhh
Confidence 67888888652 2356999999999999999999999999999999999998764 699999998753
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCcccc-------ccCCCC
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSL-------VGIPGV 328 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------vg~~~~ 328 (404)
. ..+++.++||+|++.+++ .||+||+.++.. .... .+.++++++.+++.+..+.. ++.+ +
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~-~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccC-c
Confidence 2 235667999999887766 599999988521 1111 23467788888887665443 2333 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||+++ .+ ..+|++++
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~ 209 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYF 209 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEE
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEE
Confidence 4799999999999999999999999999999999999999999999987 6999999999986 34 56999875
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-44 Score=377.11 Aligned_cols=207 Identities=21% Similarity=0.280 Sum_probs=165.2
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++++|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~--~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE--RGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS--EEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CcEEEECCEE
Confidence 36999999997742 3457999999999999999999999999999999999998874 6999999998
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+.. ..+++.++||+|++.++ ..||+||+.++.......+...+.+...+++.++ .+++..|+.+++.+. +|||
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~~~~~~~-~LSg 482 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFII--SLPEGYDSRVERGGR-NFSG 482 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCC-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHH--TSSSGGGCEECSSSC-SSCH
T ss_pred cccCCHHHHHhheEEECCCCcCc-CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHH--hcccchhhHhcCCCC-CcCH
Confidence 643 45678899999987766 4599999988642110000000111111223333 355667888888754 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+++|++||||||||+||+.+++.+++.|+++. +|+|+|++||+++. ...+|++++
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~v 549 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILV 549 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEE
Confidence 99999999999999999999999999999999999999999975 59999999999963 468999875
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=377.71 Aligned_cols=200 Identities=28% Similarity=0.378 Sum_probs=164.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++++|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT--SGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS--EEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 46999999997742 2456999999999999999999999999999999999998874 6999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~ 326 (404)
+.. ..+++.++||+|++.+++ .||+||+.++... ... +.+.+.++.. .+++..|+.+|+.
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPT-----ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSS-----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCc-ccHHHHHhcCCCC-----CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 542 456778999999877665 5999999986321 111 1223333333 3455678888877
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|. +||||||||++|||||+++|++|+|||||||||+.++..+.+.++++. +|+|+|++||+++. + ..+|++++
T Consensus 475 g~-~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~ 547 (578)
T 4a82_A 475 GV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVV 547 (578)
T ss_dssp GT-TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEE
T ss_pred CC-cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEE
Confidence 54 699999999999999999999999999999999999999999999885 58999999999974 3 56999875
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=337.74 Aligned_cols=194 Identities=20% Similarity=0.214 Sum_probs=161.3
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|+.. ...+++|+|+||+++ ||+++|+||||||||||+|+|+|+. |. +|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECc
Confidence 6788999877310 011569999999999 9999999999999999999999988 74 699999998753
Q ss_pred hhhhcceeE-EeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHHH
Q 015591 259 QETFARVSG-YCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~~~~~~~~g-~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqr 336 (404)
....++.++ |++|++.+ .+||+||+.+..... . ...+.++++++.+++. +..++.. .+||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~----~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---G----LDRDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---C----CCHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---c----hHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 211256799 99998765 899999999875432 1 1134578899999998 7777764 37999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcc-cccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD-EVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd-~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++..+++.|+++++ |||++||+++ ++...+| +++.
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~ 198 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYF 198 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEE
Confidence 999999999999999999999999999999999999998753 9999999986 5677899 8764
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-44 Score=339.67 Aligned_cols=199 Identities=26% Similarity=0.399 Sum_probs=159.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+.. ..+++|+||||++++||+++|+||||||||||+++|+|+.++ +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC---CeEEEECCEEh
Confidence 48999999977310 114699999999999999999999999999999999998763 59999999875
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCC-------CCCccccccCCC
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DGIKDSLVGIPG 327 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~vg~~~ 327 (404)
.. ..+++.++||+|++.+++ .||+||+.++.. ... .+.+.++++.+++ .+..++.++.+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 32 345677999999887765 699999998531 111 1234455555554 33445555544
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.+|+++.
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~-~-~~~d~i~~ 225 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLST-I-SSAESIIL 225 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-S-TTCSEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHH-H-HhCCEEEE
Confidence 34799999999999999999999999999999999999999999999986 48999999999873 3 46999875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=370.56 Aligned_cols=201 Identities=24% Similarity=0.313 Sum_probs=166.0
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+. +++++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD--SGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CCEEEECCEE
Confidence 35999999998741 1256999999999999999999999999999999999998874 5999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~ 326 (404)
+. ...+++.++||+|++.+++ .||+||+.++.. +... .+.++++++.+++. +..|+.+|+.
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 53 3456778999999887665 599999998631 1111 23355666666553 3567778876
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +|+|+|++||+++. .+.+|++++
T Consensus 478 ~-~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~d~i~~ 550 (582)
T 3b5x_A 478 G-TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLST--IEQADEILV 550 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEE
Confidence 5 4699999999999999999999999999999999999999999999986 49999999999863 457999875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=370.10 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=165.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+|.|+. +++++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||+++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~--~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID--EGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS--EEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC--CCeEEECCEEc
Confidence 5999999997731 1256999999999999999999999999999999999998874 69999999876
Q ss_pred ch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCCC
Q 015591 258 VQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIPG 327 (404)
Q Consensus 258 ~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~~ 327 (404)
.. ..+++.++||+|++.+++ .||+||+.++.. +... .+.++++++.+++. +..|+.+|+.+
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~ 478 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENG 478 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred cccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCC
Confidence 42 456778999999887765 599999998631 1111 23355666666553 45677888775
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 328 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 328 ~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +|+|+|++||+++. + +.+|++++
T Consensus 479 -~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~-~~~d~i~~ 550 (582)
T 3b60_A 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST-I-EQADEIVV 550 (582)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGG-T-TTCSEEEE
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHH-H-HhCCEEEE
Confidence 4699999999999999999999999999999999999999999999987 49999999999973 3 57999875
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-44 Score=376.60 Aligned_cols=206 Identities=26% Similarity=0.367 Sum_probs=163.0
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+ +++++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD--RGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC--CeEEEECCEE
Confidence 3599999999773 2356999999999999999999999999999999999998874 6999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+++.++||+|++.++ ..||+||+.++.......+..+..+....++.++ .+++..|+.+|+.|. +|||
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~~~~~g~-~LSg 494 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIK--HLPEGYETVLTDNGE-DLSQ 494 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHH--TSTTGGGCBCHHHHT-TSCH
T ss_pred hhhCCHHHHHhceEEEeCCCccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHH--hccccccchhcCCCC-CCCH
Confidence 54 345678899999987665 5699999998632111000000000011223333 345566777776654 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++|||||+++|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++. + ..+|++++
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~ 561 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIV 561 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEE
Confidence 99999999999999999999999999999999999999999986 69999999999984 4 55999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=397.87 Aligned_cols=209 Identities=25% Similarity=0.353 Sum_probs=171.4
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|.|+.. .++++|+|+||++++||.+||+||||||||||+++|.|+++| .+|+|.+||++
T Consensus 414 g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CcEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc--ccCcccCCCcc
Confidence 369999999988531 346799999999999999999999999999999999999887 46999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+|+.++||+|++. +++.||+|||.|+......+++.++.+...+++.++ .|++..|+.+|+.|. +|||
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~-Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~--~lp~G~~T~vGe~G~-~LSG 557 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPA-LFNCTIEENISLGKEGITREEMVAACKMANAEKFIK--TLPNGYNTLVGDRGT-QLSG 557 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCC-CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHH--HSTTTTSSEESSSSC-CCCH
T ss_pred chhccHHHHhhcccccCCcce-eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHH--cCCCCCccEecCCCC-CCCH
Confidence 54 3567889999999766 566799999999742111111111111222233444 367889999999886 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++||||++++|+|||||||||+||+++++.|.+.|+++. +|+|+|+|||+++ ....+|+++++
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl 625 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISC 625 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEE
T ss_pred HHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEe
Confidence 99999999999999999999999999999999999999999986 6999999999998 46789998863
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=322.52 Aligned_cols=188 Identities=23% Similarity=0.373 Sum_probs=148.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+. +++++|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--ccEEEECC---
Confidence 4899999987631 2356999999999999999999999999999999999998764 69999998
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCCCCCC
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~~~~~ 330 (404)
.++|++|++.+++. ||+||+.++... .. ...++.++.+++. ...++.++.+ ..+
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVSY------DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSCC------CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCCc------Ch----HHHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 38999998877764 999999985311 11 1122233333332 2233344443 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA-VKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~-l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||+++ .+ ..+|+++.
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~ 201 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILI 201 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEE
Confidence 999999999999999999999999999999999999999997 45554 4899999999986 34 46999875
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-43 Score=350.11 Aligned_cols=199 Identities=22% Similarity=0.273 Sum_probs=163.1
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||++.|+. +++.+|+||||+|++||+++|+|||||||||||++|+|+.+ .+|+|.++|++
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 35999999998731 34579999999999999999999999999999999999875 46999999987
Q ss_pred Cch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccc-------cCC
Q 015591 257 KVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLV-------GIP 326 (404)
Q Consensus 257 ~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~v-------g~~ 326 (404)
+.. ..+++.++||+|++.+++ +||+||+.+.. .. ..+.++++++.++|.+..++.. +..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 542 345678999999887776 69999997431 11 1345678888888876555442 222
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+ ..|||||||||+|||||+.+|++|||||||||||+..+..+++.|+++. .++|+|++|||++ ....+|+++++
T Consensus 153 g-~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl 226 (390)
T 3gd7_A 153 G-CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVI 226 (390)
T ss_dssp T-TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEE
T ss_pred c-ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEE
Confidence 2 2499999999999999999999999999999999999999999999864 5899999999975 45669998763
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=323.41 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=147.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||++.|.. +++++|+||||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE--EEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECC----
Confidence 788999987631 135699999999999999999999999999999999999876 579999998
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHH---HHHHcCCCC-CccccccCCCCCCCCHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNE---VLETIELDG-IKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~l~~-~~~~~vg~~~~~~LSgG 334 (404)
.++||+|++. ++.+||+||+.++... .. +..+.+.+ +.+.+++.+ ..++.++.+ +.+||||
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~LSgG 131 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EE-PYYRSVIQACALLPDLEILPSGDRTEIGEK-GVNLSGG 131 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CT-THHHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCCCHH
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CH-HHHHHHHHHHhhHHHHHhccccccccccCC-CCCCCHH
Confidence 3899999865 5688999999986421 11 11111111 122233221 122233333 3579999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK---NVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~---~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||++|||||+.+|++|||||||+|||+.++..+++.|. ++. +|+|||++||+++. + ..+|+++.
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~ 200 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIV 200 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEE
Confidence 9999999999999999999999999999999999999995 443 58999999999974 3 57999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=392.50 Aligned_cols=204 Identities=26% Similarity=0.353 Sum_probs=170.1
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|+||+|.|+.. .+.++|+||||+|+|||.+||+|+||||||||+++|.|+++|. +|+|.+||.|
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~--~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL--GGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS--SSEEEETTEE
T ss_pred CeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC--CCEEEECCEE
Confidence 469999999988531 2356999999999999999999999999999999999998874 5999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIP 326 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~ 326 (404)
+. ...+|+.++||+|++.+ ++.|++|||.|+.. +++.+. +.+.++++.. .+++..|+.+|+.
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~L-F~gTIreNI~~gld---~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTL-FDCSIAENIIYGLD---PSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCC-CSEEHHHHHSSSSC---TTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEe-eCccHHHHHhccCC---CCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 64 36788999999997765 56799999998632 112221 2233333333 4577889999988
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 327 ~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|. +||||||||++|||||+++|+|||||||||+||+++++.|++.|+++. +|+|+|+|+|+++. ...+|+|+++
T Consensus 1215 G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vl 1288 (1321)
T 4f4c_A 1215 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVV 1288 (1321)
T ss_dssp SC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEE
T ss_pred Cc-ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEE
Confidence 75 699999999999999999999999999999999999999999999875 58999999999984 6679999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-41 Score=379.33 Aligned_cols=209 Identities=25% Similarity=0.386 Sum_probs=167.0
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+.. .+.++|+||||++++||++||+||||||||||+++|+|+++|. +|+|.+||.+
T Consensus 386 g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~--~G~i~i~g~~ 453 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL--DGMVSIDGQD 453 (1284)
T ss_dssp CCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS--EEEEEETTEE
T ss_pred CeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEE
Confidence 459999999988421 2346999999999999999999999999999999999998874 6999999987
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
+. ...+++.+|||+|++.+++ .||+||+.++.......++..+.+...+++.++ .+++..|+.+|+.|. +|||
T Consensus 454 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~~g~-~LSg 529 (1284)
T 3g5u_A 454 IRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGERGA-QLSG 529 (1284)
T ss_dssp GGGSCHHHHHHHEEEECSSCCCCS-SCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSSSSC-SSCH
T ss_pred HHhCCHHHHHhheEEEcCCCccCC-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH--hccccccccccCCCC-ccCH
Confidence 53 3456788999999887664 599999999742111011111111122234444 355677899998765 6999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|+|||||||||+||+++++.+.+.++++. +|+|+|+|||+++. + ..+|+++++
T Consensus 530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl 597 (1284)
T 3g5u_A 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGF 597 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEE
Confidence 99999999999999999999999999999999999999998875 59999999999873 4 559998864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=316.45 Aligned_cols=183 Identities=23% Similarity=0.369 Sum_probs=134.7
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++. .+++|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|
T Consensus 40 ~l~~~~l~~~---------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLL---------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 99 (290)
T ss_dssp -------------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE--EEEEEECCS---
T ss_pred eEEEEEEEEc---------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECC---
Confidence 4788888873 14599999999999999999999999999999999999876 579999988
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-------CCccccccCCCCCC
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------GIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~vg~~~~~~ 330 (404)
.++|++|++.+++ .||+||+. +. .. .. ..+++.++.+++. ...++.++.+ +.+
T Consensus 100 -------~i~~v~Q~~~l~~-~tv~enl~-~~--~~----~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMP-GTIKENII-GV--SY----DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 159 (290)
T ss_dssp -------CEEEECSSCCCCS-SBHHHHHH-TT--CC----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCc-ccHHHHhh-Cc--cc----ch----HHHHHHHHHhChHHHHHhccccccchhcCc-cCc
Confidence 3899999887766 59999998 32 11 11 1122333333332 2223334333 347
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAV-KNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++ .+ ..+|+++.
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~ 230 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILI 230 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEE
Confidence 9999999999999999999999999999999999999999974 5554 5899999999985 34 56999875
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=369.71 Aligned_cols=209 Identities=24% Similarity=0.361 Sum_probs=166.5
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+|.|+.. .+.++|+||||++++||++||+||||||||||+++|+|+++|. +|+|.+||++
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~--~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM--AGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS--EEEEESSSSC
T ss_pred CcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEE
Confidence 359999999988421 1246999999999999999999999999999999999998874 6999999998
Q ss_pred Cc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc--cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 257 KV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 257 ~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
+. ...+++.++||+|++.+ +..||+||+.++...+... ++..+.+...+++.++ .+++..|+.+|+.|. +|
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l-~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~--~l~~gldt~vge~G~-~L 1172 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPIL-FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDKGT-QL 1172 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCC-CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHS--STTTGGGCBCSTTSC-SS
T ss_pred cccCCHHHHHhceEEECCCCcc-ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHH--hCccccccccCCCCC-cc
Confidence 54 34567889999998754 5679999998864221100 0001111112223333 456778999998764 69
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||++|||||+++|+||||||||||||+.+++.|.+.|+++. +|+|+|++|||++. + ..||+++++
T Consensus 1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl 1242 (1284)
T 3g5u_A 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVI 1242 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEE
Confidence 9999999999999999999999999999999999999999998864 69999999999984 4 569998863
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=320.59 Aligned_cols=191 Identities=23% Similarity=0.275 Sum_probs=159.1
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|. + ..|+++|+++++||+++|+||||||||||+++|+|+.+|. +|+|.+++.
T Consensus 268 ~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~~~- 330 (538)
T 3ozx_A 268 TKMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD--EGSVTPEKQ- 330 (538)
T ss_dssp EEEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--BCCEESSCC-
T ss_pred ceEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCe-
Confidence 3577888877652 2 3578889999999999999999999999999999998874 599987653
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.++|++|+....+.+||+||+.+..... .. .....++++++.+++.+..++.++ +||||||
T Consensus 331 --------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~ 391 (538)
T 3ozx_A 331 --------ILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESNVN-----DLSGGEL 391 (538)
T ss_dssp --------CEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHH
T ss_pred --------eeEeechhcccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCChh-----hCCHHHH
Confidence 4789999876667899999998742111 00 112346788888999887777754 7999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||++ ++..+||+++++
T Consensus 392 QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl 459 (538)
T 3ozx_A 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVF 459 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999975 5999999999997 688899999863
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=323.38 Aligned_cols=189 Identities=24% Similarity=0.294 Sum_probs=159.2
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|. + ..|+++||++++||++||+||||||||||+++|+|+.+|. +|+|.+
T Consensus 356 ~~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~---- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKVEW---- 415 (607)
T ss_dssp EEEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BSCCCC----
T ss_pred eEEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEE----
Confidence 4588888887652 2 2689999999999999999999999999999999998764 598865
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
.+.++|++|+....+.+||.|++........ ...+.++++++.+++.+..++.++ +||||||
T Consensus 416 ------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 477 (607)
T 3bk7_A 416 ------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGEL 477 (607)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHH
T ss_pred ------eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCChh-----hCCHHHH
Confidence 2458999998777788999998876411110 113457889999999888887754 7999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++ +.|+|||++|||++ .+...+|+++++
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl 545 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVF 545 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999986 46999999999986 678899998763
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=319.24 Aligned_cols=189 Identities=24% Similarity=0.299 Sum_probs=157.8
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++|+++.|. + ..|+++||++++||++||+||||||||||+++|+|+.+|. +|+|.+
T Consensus 286 ~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~---- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKIEW---- 345 (538)
T ss_dssp EEEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BCCCCC----
T ss_pred eEEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEE----
Confidence 4588889987662 2 3689999999999999999999999999999999998764 598875
Q ss_pred CchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 257 ~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
...++|++|+....+.+||.|++........ ...+.++++++.+++.+..++.++ .||||||
T Consensus 346 ------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 407 (538)
T 1yqt_A 346 ------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGEL 407 (538)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHH
T ss_pred ------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 2358999998777788999998865311110 012456788888898777777654 7999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||++ ++...||+++++
T Consensus 408 qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl 475 (538)
T 1yqt_A 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVF 475 (538)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999874 5999999999986 688899998763
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=316.04 Aligned_cols=178 Identities=22% Similarity=0.296 Sum_probs=144.7
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE---------EECCccCch---h--hhcceeEEee
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI---------KIGGYPKVQ---E--TFARVSGYCE 270 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I---------~i~G~~~~~---~--~~~~~~g~v~ 270 (404)
.+|+|+| ++++||++||+||||||||||+|+|+|+.+|. +|++ .++|.+... . ..+..+++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~--~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN--LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4899999 99999999999999999999999999988764 4774 356654321 1 1123578888
Q ss_pred cCCCCCC---CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 271 QTDIHSP---QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 271 Q~~~~~~---~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
|.....+ ..|+.|++... +. .++++++++.+++.+..++.++ +|||||||||+|||||+.
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~-------~~-----~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKA-------DE-----TGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLR 175 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHH-------CS-----SSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred hhhhhcchhhhccHHHHHhhh-------hH-----HHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhc
Confidence 8543322 24899987531 00 1236789999999888887754 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|++|||||||++||+.++..+++.|++++++|.|||++|||++ .+...||++++
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~v 230 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHV 230 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999878999999999987 68889999875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=319.63 Aligned_cols=178 Identities=23% Similarity=0.302 Sum_probs=144.7
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE---------EECCccCch---h--hhcceeEEee
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI---------KIGGYPKVQ---E--TFARVSGYCE 270 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I---------~i~G~~~~~---~--~~~~~~g~v~ 270 (404)
.+|+|+| .+++||+++|+||||||||||+|+|+|+.+|. +|++ .++|.+... . ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~--~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN--LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC--TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC--CCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4899999 99999999999999999999999999988764 4775 356654321 0 1123467888
Q ss_pred cCCCCCC---CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 271 QTDIHSP---QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 271 Q~~~~~~---~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
|.....+ ..||+|++... .. .+.++++++.++|.+..++.++ +||||||||++|||||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhc
Confidence 7532222 24999998641 00 1236788999999988888754 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+|++|||||||++||+.++..+++.|++++++|.|||++|||++ .+...+|++++
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~v 300 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHV 300 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEE
Confidence 99999999999999999999999999999877999999999986 67788999865
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=307.86 Aligned_cols=176 Identities=24% Similarity=0.266 Sum_probs=146.8
Q ss_pred eeeeeeeeeeeeCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCC
Q 015591 204 LRLLYDVTGSLRPG-----VLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQ 278 (404)
Q Consensus 204 ~~iL~~vs~~i~~G-----e~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~ 278 (404)
..+++++||++++| |+++|+||||||||||+++|+|+.+|. +|+. . .+..++|++|+....+.
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCcC------c----cCCcEEEecccccccCC
Confidence 45789999999998 789999999999999999999998874 4752 1 13458999998766677
Q ss_pred CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
.||+|++.... +. .. ...+.++++++.+++.+..++.+ .+|||||||||+|||||+.+|++|||||||
T Consensus 428 ~tv~e~~~~~~--~~--~~---~~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 428 GTVRQLFFKKI--RG--QF---LNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp SBHHHHHHHHC--SS--TT---TSHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred ccHHHHHHHHh--hc--cc---ccHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 89999875422 11 11 11245678899999998888875 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 359 TGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 359 sgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||+.++..+++.|+++++ .|+|||++|||++ ++..++|+++++
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl 541 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVF 541 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999999999999864 5999999999997 688899999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=311.65 Aligned_cols=192 Identities=21% Similarity=0.292 Sum_probs=123.5
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHH---------------------HHHhCCCCCCc-----eeeEEEECCccC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLL---------------------DVLAGRKTTGS-----MEGEIKIGGYPK 257 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl---------------------~~L~g~~~~~~-----~~G~I~i~G~~~ 257 (404)
..+|+||||+|++||++||+||||||||||+ +++.|+..++. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 78888766541 136677777653
Q ss_pred chhhhcceeEEeecCCC-------------------CCCCCCHHHHHHHHhhhhcCccCChh-----hHHHHHHHHHHHc
Q 015591 258 VQETFARVSGYCEQTDI-------------------HSPQITVEESVIFSAWLRLAPEINSK-----TKAEFVNEVLETI 313 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~-------------------~~~~~Tv~e~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l 313 (404)
.. ..++.+++++|... .++.+||+||+.+............. +......++++.+
T Consensus 111 ~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 111 SR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 21 12334455554322 23568999999875322111100000 0001112457888
Q ss_pred CCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 314 ELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 314 ~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
+|.+. .++.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+||||+
T Consensus 190 gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 190 GLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 88764 466643 699999999999999999998 9999999999999999999999999988899999999998
Q ss_pred CHHHHHhcccccc
Q 015591 391 SIDIFEAFDEVKQ 403 (404)
Q Consensus 391 ~~~i~~~fd~~l~ 403 (404)
+ ....+|++++
T Consensus 265 ~--~~~~~d~ii~ 275 (670)
T 3ux8_A 265 D--TMLAADYLID 275 (670)
T ss_dssp H--HHHHCSEEEE
T ss_pred H--HHhhCCEEEE
Confidence 6 3556999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=307.62 Aligned_cols=181 Identities=20% Similarity=0.256 Sum_probs=148.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+...|+++.| +++.+|+|+||++++|++++|+||||||||||+|+|+| |+| +|.+.
T Consensus 435 ~L~~~~ls~~y-------------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAY-------------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEE-------------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 47777888876 34679999999999999999999999999999999995 332 34332
Q ss_pred chhhhcceeEEeecCC-CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCccccccCCCCCCCCHHH
Q 015591 258 VQETFARVSGYCEQTD-IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSLVGIPGVNGLSTEQ 335 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~-~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~vg~~~~~~LSgGq 335 (404)
. . ...++|++|+. ..++.+||.||+.+ ... .. .+.++++++.+++. +..++.++ +|||||
T Consensus 492 ~-~--~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGq 553 (986)
T 2iw3_A 492 Q-E--ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGW 553 (986)
T ss_dssp T-T--TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHH
T ss_pred c-c--ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHH
Confidence 1 1 12368998864 56788999999976 111 11 45678899999995 55666654 699999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||++ .+...+|+++.
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~ 617 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIIN 617 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999987 5899999999986 67889999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=307.61 Aligned_cols=197 Identities=22% Similarity=0.260 Sum_probs=149.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++|++|.|+ .+++++|+|+||++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|.
T Consensus 671 mL~v~nLs~~Y~-----------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~--sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYP-----------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT--SGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCT-----------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS--EEEEEECTT--
T ss_pred eEEEEeeEEEeC-----------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEcCc--
Confidence 589999998763 11256899999999999999999999999999999999998764 699999863
Q ss_pred chhhhcceeEEeecCCCC----CCCCCHHHHHHHHhhhhc------------C---------------------------
Q 015591 258 VQETFARVSGYCEQTDIH----SPQITVEESVIFSAWLRL------------A--------------------------- 294 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~----~~~~Tv~e~l~~~~~~~~------------~--------------------------- 294 (404)
..++|++|+..+ ....|+++++.+...... .
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 136788775321 123577777654210000 0
Q ss_pred -------------------------cc--------C--------------------------ChhhHHHHHHHHHHHcCC
Q 015591 295 -------------------------PE--------I--------------------------NSKTKAEFVNEVLETIEL 315 (404)
Q Consensus 295 -------------------------~~--------~--------------------------~~~~~~~~~~~~l~~l~l 315 (404)
.. . ......+.++++++.+++
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 00 0 000113457889999999
Q ss_pred CC-C-ccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH
Q 015591 316 DG-I-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID 393 (404)
Q Consensus 316 ~~-~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~ 393 (404)
.+ . .+..+ .+||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||+++ .
T Consensus 890 ~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~ 960 (986)
T 2iw3_A 890 DPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-F 960 (986)
T ss_dssp CHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-H
T ss_pred CchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-H
Confidence 74 2 35443 379999999999999999999999999999999999999999888754 679999999986 5
Q ss_pred HHHhccccccC
Q 015591 394 IFEAFDEVKQF 404 (404)
Q Consensus 394 i~~~fd~~l~~ 404 (404)
+...||+++.+
T Consensus 961 v~~l~DrVivL 971 (986)
T 2iw3_A 961 TKNLTEEVWAV 971 (986)
T ss_dssp HTTTCCEEECC
T ss_pred HHHhCCEEEEE
Confidence 77789998764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=294.96 Aligned_cols=180 Identities=21% Similarity=0.301 Sum_probs=135.3
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE-----------ECCccCch---hhhccee--EE
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK-----------IGGYPKVQ---ETFARVS--GY 268 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~-----------i~G~~~~~---~~~~~~~--g~ 268 (404)
..|++++ .+++||++||+||||||||||||+|+|+.+|. +|+|. +.|.+... ....+.+ .+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~--~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC--CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3677777 68999999999999999999999999998875 48872 33332110 0111111 22
Q ss_pred eecCCCC------CCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHH
Q 015591 269 CEQTDIH------SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA 342 (404)
Q Consensus 269 v~Q~~~~------~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IA 342 (404)
.+|.... .+..++.+++.... ....+.++++++.+++.+..++.+ .+||||||||++||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~----------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM----------EKSPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC----------CSCHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh----------hhHHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHH
Confidence 2332111 11234555543210 111346788999999998888775 47999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 343 VELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 343 raL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||+.+|++|||||||++||+.++..+.+.|++++++|+|||++||+++ ++...+|++++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~v 293 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCI 293 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999878999999999997 78889999875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-33 Score=291.56 Aligned_cols=168 Identities=21% Similarity=0.275 Sum_probs=131.3
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE-----------EECCccCch---hhhc--ceeE----EeecCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI-----------KIGGYPKVQ---ETFA--RVSG----YCEQTD 273 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I-----------~i~G~~~~~---~~~~--~~~g----~v~Q~~ 273 (404)
.++||++||+||||||||||+|+|+|+..|. +|+| .++|.++.. .... ..+. |+.+.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~--~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN--FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC--TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 3589999999999999999999999998875 4887 566765421 0011 1122 333322
Q ss_pred CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 015591 274 IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 353 (404)
Q Consensus 274 ~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLl 353 (404)
. +...|++|++.... ..+.++++++.+++.+..++.++ +|||||||||+|||||+.+|++||
T Consensus 100 ~-~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 K-FLKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp T-TCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred h-hccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2 23358887654210 01235788999999888888764 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 354 MDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 354 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||++||+.++..+.+.|+++++ |+|||++||+++ ++...+|++.+
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~v 209 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHI 209 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEE
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEE
Confidence 9999999999999999999999975 999999999996 78889999865
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-32 Score=291.04 Aligned_cols=181 Identities=26% Similarity=0.352 Sum_probs=132.0
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh----------------------CCCCCCceeeEEEECCccCchhh
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA----------------------GRKTTGSMEGEIKIGGYPKVQET 261 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~----------------------g~~~~~~~~G~I~i~G~~~~~~~ 261 (404)
..+|+||||+|++||++||+||||||||||+++|. |+.. ..|.|.++|.+.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~---~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH---LDKVIDIDQSPIGRTP 411 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG---CSEEEECCSSCSCSST
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc---cCceeEeccccCCCCC
Confidence 35899999999999999999999999999998754 2222 2367888876542100
Q ss_pred -----------------h---------------------------cceeEEeecCCCCC---------------------
Q 015591 262 -----------------F---------------------------ARVSGYCEQTDIHS--------------------- 276 (404)
Q Consensus 262 -----------------~---------------------------~~~~g~v~Q~~~~~--------------------- 276 (404)
+ .+..|+++|+..++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 0 00113333322221
Q ss_pred -----------CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHHHHH
Q 015591 277 -----------PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTIAVE 344 (404)
Q Consensus 277 -----------~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~IAra 344 (404)
..+||+||+.|.... ...+.+.+.++.+++.. ..+... .+|||||||||+||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAE 557 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHH
Confidence 147999999875321 12234567778888864 234443 4799999999999999
Q ss_pred HhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 345 LVANP---SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 345 L~~~p---~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|+.+| ++|||||||+|||+.++..+++.|++++++|+|||+||||++ ....+|++++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~ 617 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIID 617 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEE
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEE
Confidence 99887 599999999999999999999999999878999999999986 3467999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=275.10 Aligned_cols=94 Identities=26% Similarity=0.347 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 015591 304 EFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTTGLDARAAAIIMRAVKNVVDT 379 (404)
Q Consensus 304 ~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~---p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~ 379 (404)
+.+.++++.++|... .++.+ ..|||||||||+||++|+.+ |++|||||||+|||+.++..+++.|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPA-----TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCCc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 467889999999763 34443 47999999999999999996 6999999999999999999999999999888
Q ss_pred CCeEEEEecCCCHHHHHhccccccC
Q 015591 380 GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 380 g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|.|||+++|+++ ++ ..+|+++.+
T Consensus 783 G~tVIvisHdl~-~i-~~aDrii~L 805 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDWVLDI 805 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEE
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEE
Confidence 999999999986 45 889998753
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=273.71 Aligned_cols=182 Identities=29% Similarity=0.386 Sum_probs=136.3
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh-C-C--------CCCCc---eee------EEEECCccCch--h----
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA-G-R--------KTTGS---MEG------EIKIGGYPKVQ--E---- 260 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~-g-~--------~~~~~---~~G------~I~i~G~~~~~--~---- 260 (404)
.|+|||++|++|+++||+|+||||||||+++|. | + ..++. ..| .|.++|.++.. .
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999853 2 1 12221 224 58888876421 0
Q ss_pred -------h---------hcceeEEeecCCCCC----------------------C-------------------------
Q 015591 261 -------T---------FARVSGYCEQTDIHS----------------------P------------------------- 277 (404)
Q Consensus 261 -------~---------~~~~~g~v~Q~~~~~----------------------~------------------------- 277 (404)
. ..+.+||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 0 013356776642211 1
Q ss_pred -------CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 278 -------QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 278 -------~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
.+|+.|++.|... . .+.+.+.++++.++|.. ..++.+ ..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~---~~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I---PKIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C---HHHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c---hhHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCC
Confidence 3577788776421 1 11233567899999976 455554 479999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 350 ---SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 350 ---~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||||+|||+.++..+++.|++++++|.|||++||+++ . ...+|+++.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIiv 919 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIID 919 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEE
Confidence 999999999999999999999999999888999999999986 3 468999875
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=270.32 Aligned_cols=184 Identities=26% Similarity=0.409 Sum_probs=134.5
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHH---------HHHhCCCCCC----cee------eEEEECCccCchh-----
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLL---------DVLAGRKTTG----SME------GEIKIGGYPKVQE----- 260 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl---------~~L~g~~~~~----~~~------G~I~i~G~~~~~~----- 260 (404)
..|+|||++|++|++++|+|+||||||||+ +++.+...+. ..+ +.+.+++.++...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 4454432211 112 3355555432100
Q ss_pred --------h-------------------------------hcceeEEeecCCCCCC------------------------
Q 015591 261 --------T-------------------------------FARVSGYCEQTDIHSP------------------------ 277 (404)
Q Consensus 261 --------~-------------------------------~~~~~g~v~Q~~~~~~------------------------ 277 (404)
. ..+..|++.++..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 0122467777655544
Q ss_pred --------CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 278 --------QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 278 --------~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
.+||.|++.|... ......+.++++.++|... ..+.+ ..+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~---~lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYV---KLGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGS---BTTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhc---------chhHHHHHHHHHHcCCchh---hccCC-ccCCCHHHHHHHHHHHHHhhCC
Confidence 3688888887431 1223456788998898642 22333 3479999999999999999876
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 350 ---SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 350 ---~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+||||||||+|||+.++..+++.|++++++|.|||+|+|+++ ....+|+++.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIiv 879 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIID 879 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEE
Confidence 799999999999999999999999999888999999999985 4466999875
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=254.08 Aligned_cols=194 Identities=14% Similarity=0.166 Sum_probs=134.3
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC------------------------------------Cceee
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT------------------------------------GSMEG 248 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~------------------------------------~~~~G 248 (404)
.+++++++++++| +++|+|||||||||||++|.++... ...+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 9999999999999999999664321 01258
Q ss_pred EEEECCccCchh---hh-cceeEEeecCCCCCCCCCHHHHHHHHhhhhcC-------------------ccCCh------
Q 015591 249 EIKIGGYPKVQE---TF-ARVSGYCEQTDIHSPQITVEESVIFSAWLRLA-------------------PEINS------ 299 (404)
Q Consensus 249 ~I~i~G~~~~~~---~~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~-------------------~~~~~------ 299 (404)
++++||.+.... .+ +..+++++|++.++. .+..+...|....... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 899999886532 22 234789999766543 2554444432111000 00000
Q ss_pred --------------------------------hhHHHHHHHHHHHcCCCCCc----------------cc---cccCC--
Q 015591 300 --------------------------------KTKAEFVNEVLETIELDGIK----------------DS---LVGIP-- 326 (404)
Q Consensus 300 --------------------------------~~~~~~~~~~l~~l~l~~~~----------------~~---~vg~~-- 326 (404)
..-.+.+.+.++.+++.+.. +. .+...
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 00112344455555554310 00 11100
Q ss_pred ----CCCC-CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcc
Q 015591 327 ----GVNG-LSTEQRKRLTIAVELVANP--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD 399 (404)
Q Consensus 327 ----~~~~-LSgGqrqRl~IAraL~~~p--~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd 399 (404)
.... ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|.|||+|||++ ++.+.+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 0111 7999999999999999999 9999999999999999999999999997 699999999997 4678899
Q ss_pred cccc
Q 015591 400 EVKQ 403 (404)
Q Consensus 400 ~~l~ 403 (404)
++++
T Consensus 364 ~i~~ 367 (415)
T 4aby_A 364 HHYK 367 (415)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9875
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-31 Score=274.17 Aligned_cols=168 Identities=15% Similarity=0.100 Sum_probs=130.4
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee-E-EEECCccCchhhhcceeEEeecCCC---CCCCCCHH
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG-E-IKIGGYPKVQETFARVSGYCEQTDI---HSPQITVE 282 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G-~-I~i~G~~~~~~~~~~~~g~v~Q~~~---~~~~~Tv~ 282 (404)
+++|+++++|++++|+||||||||||+|+|+|+..+ .+| + |.++|. .++.++|++|+.. +...+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 379999999999999999999999999999998875 469 8 999983 2567899999763 45567999
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVE--LVANPSI----IFMDE 356 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAra--L~~~p~i----LlLDE 356 (404)
||+ |+........ ..+.+.++++.+++.+..+ . .+||||||||++|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGAT-----LLHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSCC-----SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCcc-----hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 7543211110 0122345666777766554 1 3699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC--H---HHHHhccc
Q 015591 357 -PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS--I---DIFEAFDE 400 (404)
Q Consensus 357 -PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~--~---~i~~~fd~ 400 (404)
||++||+. ...+.+.+++ .|+|+|+++|+.+ . ++..++|+
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhccc
Confidence 99999999 5555555543 3789999999987 3 45577888
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-31 Score=242.76 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=100.9
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+++.+|+|| ++||+++|+||||||||||+++|+|+ +| .+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 446789996 89999999999999999999999998 65 3587732101111123456799999964
Q ss_pred HHHH-HHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 015591 282 EESV-IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 360 (404)
Q Consensus 282 ~e~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsg 360 (404)
+||+ .+....... .......+.++++++. + | |||||++|||||+.+|++|||||||+|
T Consensus 76 ~enl~~~~~~~~~~--~~~~~~~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 76 NEKIDPYLRPLHDA--LRDMVEPEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp ----CTTTHHHHHH--HTTTSCTTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHHHHHHH--HHHhccHHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 5555 332110000 0000001234455542 1 2 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 361 LDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
++..+++.|+++ ++|+||| +|||++
T Consensus 135 ----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 135 ----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp ----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 888999999988 6799999 999986
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-28 Score=215.22 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=100.0
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCC-CCCCHHHHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS-PQITVEESVIF 287 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~-~~~Tv~e~l~~ 287 (404)
||||++++||+++|+||||||||||++++.+ |...+++ ... .|+++|+.... ...++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~-----d~~---~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISS-----DFC---RGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEH-----HHH---HHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEcc-----HHH---HHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999753 1111111 111 25677753210 0111111111
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH---
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR--- 364 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~--- 364 (404)
......+ ..+.....+.. ...|+|||||++||||++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~~~~~-~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVSKRL-QLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHHHHH-HTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHHHHH-hCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111222 23443333322 247999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 365 -------------AAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 365 -------------~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
....+++.|++++++|.|+|++||+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558889999888767999999999985
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=222.76 Aligned_cols=73 Identities=26% Similarity=0.394 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 329 NGLSTEQRKRLTIAVELV------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
.+||||||||++||+||+ .+|++|||||||+|||+.++..+++.|+++.+.|+|||+|||+++ ..+.+|+++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~~ 355 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRKL 355 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEEE
Confidence 469999999999999999 799999999999999999999999999999878999999999985 477899987
Q ss_pred c
Q 015591 403 Q 403 (404)
Q Consensus 403 ~ 403 (404)
+
T Consensus 356 ~ 356 (365)
T 3qf7_A 356 R 356 (365)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=219.60 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 329 NGLSTEQRKRLTIAVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
..||+|||||++||++|+ .+|++|||||||++||+..+..+.+.|+++. +|.|||++||+++ +.+.+|++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~ 291 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLL 291 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceE
Confidence 469999999999999997 6899999999999999999999999999985 5899999999964 67889975
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-28 Score=247.42 Aligned_cols=171 Identities=14% Similarity=0.161 Sum_probs=136.3
Q ss_pred eeeeeeeeeeeeCCc--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhc
Q 015591 204 LRLLYDVTGSLRPGV--------------------LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFA 263 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge--------------------~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~ 263 (404)
+.+|++||+++++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE--EGAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc--CceEEECCeecc----e
Confidence 458999999999999 99999999999999999999998764 599999987542 1
Q ss_pred ceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH--HHHHHHH
Q 015591 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE--QRKRLTI 341 (404)
Q Consensus 264 ~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG--qrqRl~I 341 (404)
.++++|.+ .++.+|+.|++.++. . ...+++.++.+++.+..... . ||+| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~------~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI------I-ISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE------E-EESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE------E-eCCCCccHHHHHH
Confidence 27899964 567889988876542 0 12357788888876543222 2 8999 9999999
Q ss_pred HHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CeEEEEecCCCH-HHHHhcccc
Q 015591 342 AVELVA----------NPSIIFMDEPTTGLDARAAAIIMRAVKNVV-----DTG----RTIVCTIHQPSI-DIFEAFDEV 401 (404)
Q Consensus 342 AraL~~----------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~-----~~g----~tii~~tH~~~~-~i~~~fd~~ 401 (404)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+.+. .+-+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 333 678899998873 377777776
Q ss_pred c
Q 015591 402 K 402 (404)
Q Consensus 402 l 402 (404)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-28 Score=221.80 Aligned_cols=179 Identities=11% Similarity=0.016 Sum_probs=112.4
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
...+++| .++++||+++|+||||||||||+|+|+|+.+. +.+.+.+.+.+.. ...++.++|++|+...++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 3568888 79999999999999999999999999998642 2333323232211 12345689999987666777777
Q ss_pred HHHHHHhhhhc---CccCChhhHHHHHHHH------HHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 015591 283 ESVIFSAWLRL---APEINSKTKAEFVNEV------LETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 353 (404)
Q Consensus 283 e~l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLl 353 (404)
+++.+...... .......+..+.+++. ++.+++.+..+... ..|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 76543211110 0011122222333332 22223322222221 2355 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhcccccc
Q 015591 354 MDEPTTGL----DARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 354 LDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||+++ |+..+..+.+.++++.+ .|.|+|++||+++ ++...+|++++
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~ 200 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLV 200 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHH
Confidence 99999998 78899999999999974 5899999999997 78999999875
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-25 Score=200.10 Aligned_cols=139 Identities=16% Similarity=0.140 Sum_probs=93.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP 295 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~ 295 (404)
.++|+||||||||||+++|+|+.. |.++|.+... ...++.+||++|+. ++.+++ +. ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~--- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SKF--- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ETT---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hhc---
Confidence 689999999999999999999764 2233322111 13456789999964 222222 10 000
Q ss_pred cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHH
Q 015591 296 EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTTGLDARAAAI 368 (404)
Q Consensus 296 ~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAra-----L~~~p~iLlLDE--PtsgLD~~~~~~ 368 (404)
. .-.+..+... ..||||||||++||++ ++.+|++|+||| ||++||+..+..
T Consensus 64 -~----------------~~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 64 -F----------------TSKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -C----------------CCSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -C----------------Cccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 0001222322 3699999999999996 999999999999 999999999998
Q ss_pred HHHHHHHHHhCCCeEEEEecC--CCHHHHHhccc
Q 015591 369 IMRAVKNVVDTGRTIVCTIHQ--PSIDIFEAFDE 400 (404)
Q Consensus 369 i~~~l~~l~~~g~tii~~tH~--~~~~i~~~fd~ 400 (404)
+.+.+++ .+.|+|+++|+ ....+...+|+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHhc---CCCeEEEEEccCCCchHHHHHHhc
Confidence 8888864 47789999972 23345566665
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-27 Score=219.21 Aligned_cols=179 Identities=10% Similarity=0.013 Sum_probs=115.4
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh----hhcceeEEeecCCCCCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE----TFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~g~v~Q~~~~~~~~ 279 (404)
..-|+||||++++|++++|+||||||||||+++|+|+. + |+|.+ |.+.... ..++.++|++|++..++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 34799999999999999999999999999999999976 3 78888 7653211 2345688999865443322
Q ss_pred CH-HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHH-----HHHHhcCCCEEE
Q 015591 280 TV-EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTI-----AVELVANPSIIF 353 (404)
Q Consensus 280 Tv-~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~I-----AraL~~~p~iLl 353 (404)
+. .+++.+.. ... .... ...+.++++++...+. ... ..||||||||++| +|+++.+|++++
T Consensus 84 ~~~~~~l~~~~-~~~--~~~g-~~~~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 84 LKNEDFLEYDN-YAN--NFYG-TLKSEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HHTTCEEEEEE-ETT--EEEE-EEHHHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hhccchhhhhh-ccc--ccCC-CcHHHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 20 11111100 000 0000 1123456666643321 221 2599999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------CCCeEEEEecCCCHHHHHhccccc
Q 015591 354 MDEPTTGLDARAAAIIMRAVKNVVD-------TGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 354 LDEPtsgLD~~~~~~i~~~l~~l~~-------~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|||||+++|..++..|.+.+.++.+ .+.+.|+++|+++ +.+...|+++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 9999999999999999988877642 4578899999986 6777777665
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-24 Score=210.20 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=120.1
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh-------hh--cceeEEeecCCC-CC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-------TF--ARVSGYCEQTDI-HS 276 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-------~~--~~~~g~v~Q~~~-~~ 276 (404)
++++|+++++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 46789999999999999999999999999999987653 59999999875321 22 346899999887 78
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEE
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFM 354 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlL 354 (404)
+.+|++||+.++.... .. ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 8899999998864211 00 134556677666666543 589 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCC
Q 015591 355 DEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQP 390 (404)
Q Consensus 355 DEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tH~~ 390 (404)
| ||+|||+..+. +++. +.|.|+|++||..
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKLD 257 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECCS
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCC
Confidence 9 99999998542 3444 3589999999943
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-25 Score=212.63 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEIN 298 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~ 298 (404)
.++|+||||||||||+|+|+|+..+. +|+|.++|.+......++.++|++|++.+++.+||.||+.|+......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~---- 77 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE---- 77 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH----
Confidence 48999999999999999999987664 599999998765444567899999998888999999999887533211
Q ss_pred hhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 015591 299 SKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378 (404)
Q Consensus 299 ~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~ 378 (404)
...+.+.+.++ ....+... ..||||||||++||||++. +++||||++|||+.. .+.++++.+
T Consensus 78 --~~~~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 78 --NCWEPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp --TCSHHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred --HHHHHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11112233332 12233333 2699999999999999876 999999999999987 455566655
Q ss_pred CCCeEEEEecCCC
Q 015591 379 TGRTIVCTIHQPS 391 (404)
Q Consensus 379 ~g~tii~~tH~~~ 391 (404)
. .+||++.|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999998753
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-23 Score=205.59 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=100.3
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
++++++|+.+++|++++|+||||||||||+++|+|++++. +|.|.++|.+... ...++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeeccccccchhEEEEEe-------------
Confidence 3899999999999999999999999999999999998764 5999999864210 01122222221
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
+ |||+||++|||||..+|++|+|||||+.
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~--- 252 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS--- 252 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST---
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH---
Confidence 1 7899999999999999999999999982
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 364 RAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++.+.|+.+...+.|+|+|+|+++ ..+.+|+++.
T Consensus 253 ----e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~ 286 (330)
T 2pt7_A 253 ----EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLAN 286 (330)
T ss_dssp ----HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhhee
Confidence 356777777643458999999997 5677888764
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-23 Score=208.63 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=120.6
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh-------hh--cceeEEeecCCC-CCC
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-------TF--ARVSGYCEQTDI-HSP 277 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-------~~--~~~~g~v~Q~~~-~~~ 277 (404)
+.+|+++++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... .+ ++.++|++|++. .++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc--CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 4689999999999999999999999999999987653 59999999875321 12 346899999887 788
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEe
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFMD 355 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlLD 355 (404)
..|++||+.++.... .. ..+++.+|+.+..+.... +|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 899999998864211 00 124556677666666543 589 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQ 389 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~ 389 (404)
||+|||+.++. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998653 34443 58999999994
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-26 Score=219.34 Aligned_cols=146 Identities=14% Similarity=0.202 Sum_probs=109.8
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||+|.|. .++|+++|++|++|++++|+||||||||||+++|+|++ +|+|.
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~------- 155 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL------- 155 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE-------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE-------
Confidence 67778887552 35899999999999999999999999999999999987 38873
Q ss_pred hhhhcceeEEeecCCCCCCCCCHHH-HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 QETFARVSGYCEQTDIHSPQITVEE-SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~~~~~~~~g~v~Q~~~~~~~~Tv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
+|++|++.++ ..|++| |+.+.. ... ..+.+.++.+ |++..| | ..|||||||
T Consensus 156 --------~~v~q~~~lf-~~ti~~~ni~~~~------~~~-----~~~~~~i~~~-L~~gld---g----~~LSgGqkQ 207 (305)
T 2v9p_A 156 --------SFANHKSHFW-LASLADTRAALVD------DAT-----HACWRYFDTY-LRNALD---G----YPVSIDRKH 207 (305)
T ss_dssp --------CGGGTTSGGG-GGGGTTCSCEEEE------EEC-----HHHHHHHHHT-TTGGGG---T----CCEECCCSS
T ss_pred --------EEecCccccc-cccHHHHhhccCc------ccc-----HHHHHHHHHH-hHccCC---c----cCcCHHHHH
Confidence 4566655443 357776 776631 111 1345556653 444444 2 369999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
| ||||+++|+||| ||+||+.++..|.. ++|+++ .+..+|++
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i 248 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC 248 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE
Confidence 9 999999999999 99999999988762 188876 35678887
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-23 Score=212.92 Aligned_cols=162 Identities=18% Similarity=0.126 Sum_probs=124.2
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc---cCch--------hhhcceeEEeec
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY---PKVQ--------ETFARVSGYCEQ 271 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~---~~~~--------~~~~~~~g~v~Q 271 (404)
+.++|+++ +.+.+||+++|+||||||||||+++|+|+.+++ .|.|.++|+ +... ...++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~--~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD--VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 35699999 999999999999999999999999999987764 699999997 3321 235678999999
Q ss_pred C-CCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 015591 272 T-DIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS 350 (404)
Q Consensus 272 ~-~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~ 350 (404)
+ +..++.+|+.+|+.+.+...... . +++ ....|.. ..||+|| ||++|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~---~-------~~v------~~~ld~l------~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDR---G-------QHV------LLIMDSL------TRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTT---T-------CEE------EEEEECH------HHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC---C-------CCH------HHHHHhH------HHHHHHH-HHHHHH---hCCCc
Confidence 5 45567789999998865432110 0 000 1112221 3599999 999999 88998
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----eEEEEecCCCHHHHHhccccc
Q 015591 351 IIFMDEPTTGLDARAAAIIMRAVKNVVD---T-GR-----TIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 351 iLlLDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~tH~~~~~i~~~fd~~l 402 (404)
+ |+|||+..+..+.+.++++.+ + |. ||++++||++ ...+|+++
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~ 326 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSAR 326 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHH
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEE
Confidence 8 999999999999999999865 3 74 9999999997 34456544
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=187.12 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=66.1
Q ss_pred CCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 329 NGLSTEQRK------RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 329 ~~LSgGqrq------Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
..||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.++|.|||++||++ ++++.+|+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVI 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEEE
Confidence 479999999 67788888899999999999999999999999999999877789999999995 4788999987
Q ss_pred c
Q 015591 403 Q 403 (404)
Q Consensus 403 ~ 403 (404)
.
T Consensus 325 ~ 325 (339)
T 3qkt_A 325 R 325 (339)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-24 Score=211.13 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=96.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhc
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRL 293 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~ 293 (404)
+++|+++||+||||||||||+++|+|+..+. .|. +.+++|+|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--DHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--TTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--CCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 8999999999999999999999999987652 131 457999998888877 99999865321 1
Q ss_pred CccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 294 APEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
........+.+.++++.++ .+..+..+. .||+||+||+++|++++.+|+|||||||++.+|+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~~-----~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACAP-----VYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEEE-----EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCcc-----cCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1122233455677888777 444444432 6999999999999999999999999999999985
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-22 Score=192.46 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=114.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee-EEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG-EIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G-~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
.++|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+.......+++.+..+.+... +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 34799999999999999999999999999999999976543 36 56544333332333333333333221 1233
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC--
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ-RKRLTIAVELVANPSIIFMDEPTT-- 359 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq-rqRl~IAraL~~~p~iLlLDEPts-- 359 (404)
+++.... + ...+..+.++++++...+. +.+. ...+|.+| +||+. |+++..+|++||+||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4443321 1 1112223344443322221 1111 12589998 67776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHhC-CCeEEEEecCC--CH-------------------HHHHhcccccc
Q 015591 360 -G---LDA-RAAAIIMRAVKNVVDT-GRTIVCTIHQP--SI-------------------DIFEAFDEVKQ 403 (404)
Q Consensus 360 -g---LD~-~~~~~i~~~l~~l~~~-g~tii~~tH~~--~~-------------------~i~~~fd~~l~ 403 (404)
+ +|. .....+++.|++++++ |.|||+++|+. +. .+.+.+|+++.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~ 231 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIA 231 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEE
Confidence 5 555 6678899999999764 99999999996 31 57788999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-20 Score=198.05 Aligned_cols=92 Identities=23% Similarity=0.359 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 015591 304 EFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380 (404)
Q Consensus 304 ~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p--~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g 380 (404)
++++ .++.+||... .++.+. .|||||||||.||++|+.+| ++|||||||++||+.....+.+.|++|++.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 3344 5778898765 566643 79999999999999999999 4999999999999999999999999998889
Q ss_pred CeEEEEecCCCHHHHHhcccccc
Q 015591 381 RTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 381 ~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.|||+|+|+++ +...+|+++.
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~ 452 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVD 452 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEE
T ss_pred CEEEEEcCCHH--HHHhCCEEEE
Confidence 99999999985 5678999875
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-22 Score=187.22 Aligned_cols=156 Identities=11% Similarity=0.025 Sum_probs=99.6
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
+++.+|+|+||++++|+++||+||||||||||+++|+|+. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999853 222232 2456789999974 6678899
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 361 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgL 361 (404)
.+++.+......... ......+.+.+.++.+ .+..+..+ ..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999877543211000 1111123334444432 23334443 3699999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 362 DARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 362 D~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
|.. +.++ .+.+|++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 764 2222 378999999973
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-20 Score=195.76 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=66.6
Q ss_pred CCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGL-STEQRKRLTIAVELVANP--SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~L-SgGqrqRl~IAraL~~~p--~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..| |||||||++||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||+|||+++ +...+|++++
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 457 999999999999999999 99999999999999999999999999986 899999999975 5567999875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-21 Score=180.63 Aligned_cols=130 Identities=17% Similarity=0.278 Sum_probs=94.5
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
++|+++| +++|++++|+||||||||||+++|+|++++. .+|+|.++|.++. |++|....
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~---------~~~~~~~~--------- 73 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE---------YVFKHKKS--------- 73 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCC---------SCCCCSSS---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcce---------eecCCcce---------
Confidence 4899999 9999999999999999999999999987642 1599999887642 22221100
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
+ +.+. .+++.. ..+ |++||++|..+|++|++|||| |++
T Consensus 74 --~---------v~q~-----------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 74 --I---------VNQR-----------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp --E---------EEEE-----------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred --e---------eeHH-----------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 0 0000 112211 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+...++ +. ++.|.+|++++|+.+ ..+.+|+++.
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~ 144 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVD 144 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHH
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhh
Confidence 865443 33 346999999999987 4677887653
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-21 Score=210.44 Aligned_cols=146 Identities=18% Similarity=0.140 Sum_probs=106.5
Q ss_pred ceeeeeeeeeeeeC-------CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeE-EeecCCC
Q 015591 203 KLRLLYDVTGSLRP-------GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSG-YCEQTDI 274 (404)
Q Consensus 203 ~~~iL~~vs~~i~~-------Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g-~v~Q~~~ 274 (404)
+..+++|+++.+++ |++++|+||||||||||||+| |+..+ ...+| ||+|+..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC
Confidence 35699999999987 999999999999999999999 86531 12344 8998642
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 354 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlL 354 (404)
.+|+.|++.. .+++.+.... +.+.+|+|+++ +++|++++.+|+++||
T Consensus 828 ---~l~v~d~I~~------------------------rig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLL 874 (1022)
T 2o8b_B 828 ---RLTPIDRVFT------------------------RLGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLV 874 (1022)
T ss_dssp ---EECCCSBEEE------------------------ECC--------------CHHHHHHHH-HHHHHHHCCTTCEEEE
T ss_pred ---CCCHHHHHHH------------------------HcCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEE
Confidence 3455554411 1122111111 12357777765 9999999999999999
Q ss_pred eCCCCCCCHHHH-HHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccc
Q 015591 355 DEPTTGLDARAA-AIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 355 DEPtsgLD~~~~-~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l 402 (404)
||||+|+|+... ..++..|+.++++ |.++|++||+++ .+...+|++.
T Consensus 875 DEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~ 923 (1022)
T 2o8b_B 875 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVA 923 (1022)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSS
T ss_pred ECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcce
Confidence 999999999884 5578889998876 999999999986 3455677654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-21 Score=200.17 Aligned_cols=164 Identities=18% Similarity=0.114 Sum_probs=113.1
Q ss_pred ceeeeeeeee-eeeCCcEEEEEcCCCCcHHHHHHH--HhCCCCCCceeeEEEECCccCch--hhhcceeEEeecCCCCCC
Q 015591 203 KLRLLYDVTG-SLRPGVLTALMGVSGAGKTTLLDV--LAGRKTTGSMEGEIKIGGYPKVQ--ETFARVSGYCEQTDIHSP 277 (404)
Q Consensus 203 ~~~iL~~vs~-~i~~Ge~~alvG~sGaGKSTLl~~--L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~g~v~Q~~~~~~ 277 (404)
+.++|++||+ .+++|++++|+||||||||||+++ ++|+.+++ +|.|+++|.+... ...++.+||++|+.....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4569999999 999999999999999999999999 68987654 5999999987432 123456789988532111
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV-ANPSIIFMDE 356 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~-~~p~iLlLDE 356 (404)
++.+ ... .. .. . ..... ..+.-++ +.-.+..+|. .+|++++|||
T Consensus 102 ------~l~~---~~~-~~-~~-----------------~-~~~~l-----~~~~l~~-~~~~~~~~LS~g~~~~lilDe 146 (525)
T 1tf7_A 102 ------KLFI---LDA-SP-DP-----------------E-GQEVV-----GGFDLSA-LIERINYAIQKYRARRVSIDS 146 (525)
T ss_dssp ------SEEE---EEC-CC-CS-----------------S-CCSCC-----SSHHHHH-HHHHHHHHHHHHTCSEEEEEC
T ss_pred ------cEEE---Eec-Cc-cc-----------------c-hhhhh-----cccCHHH-HHHHHHHHHHHcCCCEEEECC
Confidence 1111 000 00 00 0 00000 1122222 2334444443 5789999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH--------HHHhcccccc
Q 015591 357 PTT-----GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID--------IFEAFDEVKQ 403 (404)
Q Consensus 357 Pts-----gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~--------i~~~fd~~l~ 403 (404)
||+ +||+..+..+.++++++++.|+|||+++|+++.. ...++|++++
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~ 206 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVI 206 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEE
Confidence 998 4699999999999999987799999999999742 3445999875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-20 Score=191.21 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=110.4
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhh
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAW 290 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~ 290 (404)
++.+++|++++|+|+||||||||+++++|...+. |+ +.+.+++|+.. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN---KE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 5699999999999999999999999999965431 32 12345555321 12222221
Q ss_pred hhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----H
Q 015591 291 LRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR-----A 365 (404)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~-----~ 365 (404)
+. ... ++++. ..++....+.. +..||+||+||+.+|+++..+|++|++| ||++||.. .
T Consensus 330 -~~--g~~-------~~~~~-~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMD-------FEEME-RQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCC-------HHHHH-HTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCC-------HHHHH-hCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 111 11222 23444444433 2469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCC---------HHHHHhcccccc
Q 015591 366 AAIIMRAVKNVVDTGRTIVCTIHQPS---------IDIFEAFDEVKQ 403 (404)
Q Consensus 366 ~~~i~~~l~~l~~~g~tii~~tH~~~---------~~i~~~fd~~l~ 403 (404)
+..+.++++.+++.|.|||+++|+.. ..+..++|+++.
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999888999999999982 356778999875
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-19 Score=177.48 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccc
Q 015591 330 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~---------~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~ 400 (404)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. +|+|++||. +. .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~----~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP----GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT----TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc----cCCE
Confidence 59999999999999999 8999999999999999999999999998763 799999994 42 6777
Q ss_pred ccc
Q 015591 401 VKQ 403 (404)
Q Consensus 401 ~l~ 403 (404)
++.
T Consensus 337 i~~ 339 (359)
T 2o5v_A 337 TLR 339 (359)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=198.40 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=97.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
++.+++|||+++++|++++|+||||||||||||++++...... .| ...... ...++++ +..+..
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-~g------~~vpa~--~~~i~~~---d~i~~~---- 722 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-IG------SYVPAE--EATIGIV---DGIFTR---- 722 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-HT------CCBSSS--EEEEECC---SEEEEE----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-cC------ccccch--hhhhhHH---HHHHHh----
Confidence 4569999999999999999999999999999999986321100 01 000000 0111111 111111
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD 362 (404)
+++.+.... +.+.+|+||+|++.|+++ +.+|+++||||||+|||
T Consensus 723 ------------------------------ig~~d~l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 723 ------------------------------MGAADNIYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ------------------------------C---------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred ------------------------------CChHHHHHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111111111 123689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCeEEEEecCCCHHHHHhccc
Q 015591 363 ARAAAIIM-RAVKNVVD-TGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 363 ~~~~~~i~-~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~ 400 (404)
+.....+. ..++.+++ .|.|+|++||+++ +.+++|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99999987 77777765 5999999999975 4445543
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-19 Score=154.91 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 329 NGLSTEQRKRLTIA------VELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 329 ~~LSgGqrqRl~IA------raL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||++ ++...+|+++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ii 133 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVI 133 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEEE
Confidence 47999999999876 899999999999999999999999999999999876799999999998 4678899887
Q ss_pred c
Q 015591 403 Q 403 (404)
Q Consensus 403 ~ 403 (404)
.
T Consensus 134 ~ 134 (148)
T 1f2t_B 134 R 134 (148)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-20 Score=171.00 Aligned_cols=148 Identities=15% Similarity=0.121 Sum_probs=91.0
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-----eeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHH
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGS-----MEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVI 286 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~-----~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~ 286 (404)
.-+++|++++|+||||||||||+++|+|...+.+ ..|.+++++.+... .+.+++++|...+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999443322 12467776653210 1123334443322222 3333332
Q ss_pred HHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH-HHHHHHHHHHHhc-------CCCEEEEeCCC
Q 015591 287 FSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 358 (404)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG-qrqRl~IAraL~~-------~p~iLlLDEPt 358 (404)
+.. ..+.+ +++++..+++++. +|+++++||||
T Consensus 96 ~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VAR----------------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EEE----------------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EEe----------------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 210 12222 3333455555554 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCeEEEEecCCCH---HHHHhcccccc
Q 015591 359 TGLDAR-------A-----AAIIMRAVKNVVD-TGRTIVCTIHQPSI---DIFEAFDEVKQ 403 (404)
Q Consensus 359 sgLD~~-------~-----~~~i~~~l~~l~~-~g~tii~~tH~~~~---~i~~~fd~~l~ 403 (404)
+++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|+++.
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~ 196 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVY 196 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEE
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEE
Confidence 999984 2 2367788887765 49999999996542 36677887764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-20 Score=181.72 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=117.1
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++.+++++.|.. +..+|+++ |.+.+||+++|+||||||||||+++|+|...++ .|.|.+.|++..
T Consensus 46 i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ 110 (347)
T 2obl_A 46 LLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGR 110 (347)
T ss_dssp TTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHH
T ss_pred eeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHH
Confidence 455666665521 35699999 999999999999999999999999999987764 599999886411
Q ss_pred ----------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC---CccccccC
Q 015591 259 ----------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG---IKDSLVGI 325 (404)
Q Consensus 259 ----------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~vg~ 325 (404)
...+++.+.++.|.+. +..+.+.-... .....+.....+ .+ ..|.
T Consensus 111 ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~ld~---- 168 (347)
T 2obl_A 111 EVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLMMDS---- 168 (347)
T ss_dssp HHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEEEET----
T ss_pred HHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHHHhh----
Confidence 1123456778877432 22222221100 000111111101 01 0122
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----eEEEEecCCCHHHHHhc
Q 015591 326 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD--TGR-----TIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 326 ~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~tH~~~~~i~~~f 398 (404)
+..||+|| ||+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||++ ...+
T Consensus 169 --~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~ 233 (347)
T 2obl_A 169 --VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIG 233 (347)
T ss_dssp --HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHH
T ss_pred --HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhh
Confidence 23699999 899999 688877 999999999999999999874 477 9999999998 3456
Q ss_pred cccc
Q 015591 399 DEVK 402 (404)
Q Consensus 399 d~~l 402 (404)
|+++
T Consensus 234 d~v~ 237 (347)
T 2obl_A 234 DEVR 237 (347)
T ss_dssp HHHH
T ss_pred hheE
Confidence 6654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=196.81 Aligned_cols=136 Identities=17% Similarity=0.159 Sum_probs=96.6
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHH--------hCCCCCCceeeEEEECCccCchhhhcceeEEeecCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVL--------AGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDI 274 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L--------~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~ 274 (404)
.+.+++|+++.+++|++++|+||||||||||||++ .|...|. ++. .++.+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa--~~~---------------~~~~~d---- 706 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC--ESA---------------EVSIVD---- 706 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE--EEE---------------EEECCS----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc--ccc---------------cchHHH----
Confidence 35689999999999999999999999999999999 4432221 110 011100
Q ss_pred CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHH--hcCCCEE
Q 015591 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL--VANPSII 352 (404)
Q Consensus 275 ~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL--~~~p~iL 352 (404)
+++..+++.+ .. ..++|++++++..+|+++ +.+|+++
T Consensus 707 ---------------------------------~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 707 ---------------------------------CILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ---------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ---------------------------------HHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 0011112211 11 125888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCeEEEEecCCCHHHHHhccccc
Q 015591 353 FMDEPTTGLDARAAAII-MRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 353 lLDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
||||||+|+|+.....+ ..+++.+++ .|.|+|++||+. ++.+++|++.
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~ 795 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIP 795 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccc
Confidence 99999999999998888 667777776 499999999996 4667888764
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.9e-22 Score=180.42 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=111.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCC--CCCCHHHHHHHHhhh
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHS--PQITVEESVIFSAWL 291 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~--~~~Tv~e~l~~~~~~ 291 (404)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|++++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYD- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT-
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCC-
Confidence 478999999999999999999999986531 368899977655 56789888765321
Q ss_pred hcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------
Q 015591 292 RLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQ----RKRLTIAVELVANPSIIFMDEPTTG------- 360 (404)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGq----rqRl~IAraL~~~p~iLlLDEPtsg------- 360 (404)
.+ .....+.+.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|+++++||||++
T Consensus 61 -~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 61 -HP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp -SG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred -Ch----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 11 111234456677777776554443 23689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCeEEEEecCCC
Q 015591 361 LDARAAAIIMRAVKNV-VDTGRTIVCTIHQPS 391 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l-~~~g~tii~~tH~~~ 391 (404)
||+..+..+.+.+++. .++|+|++.++|+..
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999875 456999999999853
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-20 Score=177.87 Aligned_cols=147 Identities=15% Similarity=0.097 Sum_probs=103.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhh--cceeEEeecCCCCCCCCCHHHHHH
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETF--ARVSGYCEQTDIHSPQITVEESVI 286 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~--~~~~g~v~Q~~~~~~~~Tv~e~l~ 286 (404)
+|++++|+||||||||||+++|+|++.+. +|+|.++|.+... ..+ ++.++|++|+....|..|++||+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 69999999999999999999999987764 5999999987531 111 345899999888888889999998
Q ss_pred HHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHH
Q 015591 287 FSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTTGLDAR 364 (404)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlLDEPtsgLD~~ 364 (404)
++.... . . ..+++..|+.+..+. -++..++||++||||++.+|+ +|.|| |+++
T Consensus 179 ~~~~~~-~-d----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~---- 233 (304)
T 1rj9_A 179 AMKARG-Y-D----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG---- 233 (304)
T ss_dssp HHHHHT-C-S----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC----
T ss_pred HHHhCC-C-C----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH----
Confidence 653110 0 0 012222333322222 145566999999999999999 44555 4444
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCCC
Q 015591 365 AAAIIMRAVKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~-g~tii~~tH~~~ 391 (404)
..+++.++++.+. |.|+|++||+..
T Consensus 234 --~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 --QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp --THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred --HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4456666666544 899999999854
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-19 Score=195.80 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=96.4
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT-TGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~-~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv 281 (404)
++.+++|+|++ |++++|+||||||||||||+|+|... +. .|.+. + ..+..+++++| +++.+++
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~--~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ--VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT--TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc--cCcee----e----hhccceeeHHH---hhccCCH
Confidence 45799999999 99999999999999999999999642 21 24431 1 12345677765 3333444
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC--
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEP-- 357 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL--~~~p~iLlLDEP-- 357 (404)
.||+. .++|+|+++++.+|+++ +.+|+++|||||
T Consensus 629 ~d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 629 SDDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp ------------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred HHHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 44321 14799999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 358 -TTGLDARAA-AIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 358 -tsgLD~~~~-~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
|++||..+. ..+++.|++ .|.|+|++||+.+
T Consensus 667 GTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 999999875 567777765 4899999999964
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=174.58 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 330 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~----~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+.|.++|+|||++ +.++.+|+++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 49999999999999999 58999999999999999999999999999865588999999995 56788998864
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-19 Score=193.56 Aligned_cols=145 Identities=21% Similarity=0.292 Sum_probs=103.7
Q ss_pred HHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCcc-CCh----hhHHHHHHH
Q 015591 234 LDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE-INS----KTKAEFVNE 308 (404)
Q Consensus 234 l~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~-~~~----~~~~~~~~~ 308 (404)
..|..+++.+. .++|.++|+++.. +..+|+.|++.|......... ... ....+...+
T Consensus 385 ~~C~g~rl~~~--~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 385 SVCGGRRLNRE--ALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp TTTCSCCBCTT--GGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred hhcccccCChH--hcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 34444455543 4888888876421 233577777776433221110 000 011123456
Q ss_pred HHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 015591 309 VLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC 385 (404)
Q Consensus 309 ~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~ 385 (404)
.+..+||... .++.. .+|||||||||+|||||+.+|+ +|||||||+|||+.....+++.|++++++|.|||+
T Consensus 447 ~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6777888754 45554 3799999999999999999887 99999999999999999999999999878999999
Q ss_pred EecCCCHHHHHhcccccc
Q 015591 386 TIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 386 ~tH~~~~~i~~~fd~~l~ 403 (404)
|+||++ +...+|+++.
T Consensus 522 VtHd~~--~~~~aD~ii~ 537 (916)
T 3pih_A 522 VEHDEE--VIRNADHIID 537 (916)
T ss_dssp ECCCHH--HHHTCSEEEE
T ss_pred EeCCHH--HHHhCCEEEE
Confidence 999974 4456999875
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-20 Score=180.29 Aligned_cols=158 Identities=13% Similarity=0.036 Sum_probs=85.3
Q ss_pred cCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCC
Q 015591 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR-KTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 201 ~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~-~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~ 279 (404)
++++.++++++|+| +|+|+||+|||||++.|+|. ..+ .+| +.++|.+.......+.+++++|.+.....+
T Consensus 8 ~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~--~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP--ERV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEE
T ss_pred ECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC--CCC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 35577999999998 99999999999999999996 444 357 888886643221234578999987777788
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
|+.|+..++......... ...++.+.+ ..+... .++|||||||+.+||+++ ++++||||+
T Consensus 79 tv~Dt~g~~~~~~~~e~~-----~~l~~~l~~------~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~ 138 (301)
T 2qnr_A 79 TVVDTPGYGDAINCRDCF-----KTIISYIDE------QFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFG 138 (301)
T ss_dssp EEEEEC-----------C-----TTHHHHHHH------HHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSS
T ss_pred chhhhhhhhhhcCcHHHH-----HHHHHHHHH------HHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcc
Confidence 998888775432100000 011111111 122332 369999999999999885 999999998
Q ss_pred C-CCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q 015591 360 G-LDARAAAIIMRAVKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 360 g-LD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~ 391 (404)
+ ||+... +.++++.+. +.++|++.||+.
T Consensus 139 ~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 139 HGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred cCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5 999873 556666543 789999999974
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=157.54 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=101.8
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhh
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~ 292 (404)
.+++|++++|+||||||||||++.+++... .|.+. .|.+.. ....+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccC---CCccEEEEECCCCH---HHHHHHHH---HHH
Confidence 589999999999999999999999998443 25543 344321 12346677654421 11111111 111
Q ss_pred cCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HH
Q 015591 293 LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT--GLDARA---AA 367 (404)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts--gLD~~~---~~ 367 (404)
. ... ....+++++.+.+.+..+.. +..||+||+|++ ++++.+|+++++||||+ ++|... ..
T Consensus 92 ~--~~~----~~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLS----AEERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSC----HHHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcC----hhhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 111 12345667777777665543 346999998865 68889999999999999 999744 47
Q ss_pred HHHHHHHHHHh-CCCeEEEEecCCC
Q 015591 368 IIMRAVKNVVD-TGRTIVCTIHQPS 391 (404)
Q Consensus 368 ~i~~~l~~l~~-~g~tii~~tH~~~ 391 (404)
.+++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88899998864 5999999999875
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.3e-19 Score=174.00 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=98.4
Q ss_pred eeeee-eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee----eE-EEECCccCchhhhcceeEEeecCCCCCCCC
Q 015591 206 LLYDV-TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME----GE-IKIGGYPKVQETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 206 iL~~v-s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~----G~-I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~ 279 (404)
.|+++ ++.+++|++++|+||||||||||++.|++.....+.+ |. |++++.+.. .++.+++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 46665 6899999999999999999999999999965211122 67 888886531 12345566664433222
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh-------cCCCEE
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV-------ANPSII 352 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~-------~~p~iL 352 (404)
++.||+.+.. . .-|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~-------------------------------~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVAR-------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEE-------------------------------C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEe-------------------------------c--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 3433332210 0 01456677777777777 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCeEEEEecCCC
Q 015591 353 FMDEPTTGLDARA------------AAIIMRAVKNVVD-TGRTIVCTIHQPS 391 (404)
Q Consensus 353 lLDEPtsgLD~~~------------~~~i~~~l~~l~~-~g~tii~~tH~~~ 391 (404)
|+||||+++|+.. ..++++.|+++++ .|.|||+++|..+
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999999999852 3566677777765 5999999999865
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-19 Score=162.48 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=94.7
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceeeEEEECCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT---GSMEGEIKIGGY 255 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G~ 255 (404)
++++|++|.|. ..++++ +.+++|+.++|+|+||||||||++.|+|.... .+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 67788888762 246777 88999999999999999999999999997510 123365443211
Q ss_pred cCchhhhcceeEEeecCCCCC----CCCC---HHHHHHHHhhh-hc--------CccCChhhHHHHHHHHHHHcCCCCCc
Q 015591 256 PKVQETFARVSGYCEQTDIHS----PQIT---VEESVIFSAWL-RL--------APEINSKTKAEFVNEVLETIELDGIK 319 (404)
Q Consensus 256 ~~~~~~~~~~~g~v~Q~~~~~----~~~T---v~e~l~~~~~~-~~--------~~~~~~~~~~~~~~~~l~~l~l~~~~ 319 (404)
-. +....-++ +.+.+. +... .+..+...... +. ............+.++++..++....
T Consensus 68 ~~----~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (210)
T 1pui_A 68 FE----VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 142 (210)
T ss_dssp EE----EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE
T ss_pred EE----ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE
Confidence 00 00000011 101110 0000 11111111100 00 00000111222344555555654321
Q ss_pred -cccccCCCCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 015591 320 -DSLVGIPGVNGLSTEQRKR-LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT 382 (404)
Q Consensus 320 -~~~vg~~~~~~LSgGqrqR-l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 382 (404)
.... ..+|+||||| +..+++++.+|+++++|||||++|..+..++++.|.++.++|.|
T Consensus 143 v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 LLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 2222 3589999999 89999999999999999999999999999999999998766654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-18 Score=185.05 Aligned_cols=144 Identities=11% Similarity=0.056 Sum_probs=96.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
++.+++|+++. ++|++++|+||||||||||||+|+|...... .| ..+.. .+..++++.| ++..+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-IG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-TT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-cC------cccch--hcccceeHHH---HHhhCCHH
Confidence 45699999999 9999999999999999999999998532110 12 11111 1233555544 33334444
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 362 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD 362 (404)
|++..+ .+.+|+|+++ ++.+...+.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 433210 1236777664 445556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCeEEEEecCCCHHHHHhcccc
Q 015591 363 ARAAAII-MRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 363 ~~~~~~i-~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+.....+ ...++.+.+ .|.++|++||+++ +...+|++
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~ 739 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKM 739 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHS
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhh
Confidence 9877775 678888877 4999999999985 34566654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-17 Score=179.04 Aligned_cols=119 Identities=23% Similarity=0.370 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHHhhhhcCcc---CCh---hhHHHHHHHHHHHcCCCCC-ccccccCCCCCCCCHHHHHHHHHHHHHhcCC
Q 015591 277 PQITVEESVIFSAWLRLAPE---INS---KTKAEFVNEVLETIELDGI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANP 349 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~---~~~---~~~~~~~~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p 349 (404)
..+||.|++.|...+..+.. +.. ++..+++ +.++.+||... .++.++ +|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCC
Confidence 46899999999665533221 000 1223344 45788899765 566654 79999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 350 --SIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 350 --~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
++|||||||+|||+.....+.+.|++|++.|.|||+|+|+++ ....+|+++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~ 577 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLID 577 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHHSCSEEEE
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEE
Confidence 899999999999999999999999999888999999999985 3567999875
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-18 Score=158.84 Aligned_cols=164 Identities=15% Similarity=0.116 Sum_probs=106.1
Q ss_pred eeeeeeeee-eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcc---eeEEeecCCCCCCCC
Q 015591 204 LRLLYDVTG-SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFAR---VSGYCEQTDIHSPQI 279 (404)
Q Consensus 204 ~~iL~~vs~-~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~---~~g~v~Q~~~~~~~~ 279 (404)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.+.+.+.+.......+ ..++.+|....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh----
Confidence 457888886 8999999999999999999999999975432 2356655443322211111 11222211000
Q ss_pred CHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCC
Q 015591 280 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEP 357 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~--iLlLDEP 357 (404)
+++ ...... ...++ .. .. ....|.++.++...+.+...+|+ ++++|||
T Consensus 83 ---~~~------~~~~~~------------~~~~~-~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 83 ---KKL------IIIDAL------------MKEKE-DQ---WS-----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp ---TTE------EEEECC------------C-----CT---TB-----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred ---CCE------EEEecc------------ccccC-ce---ee-----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 000 000000 00001 00 01 12359999998888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHh-CCCeEEEEecCCC-------HHHHHhcccccc
Q 015591 358 TTGL--DARAAAIIMRAVKNVVD-TGRTIVCTIHQPS-------IDIFEAFDEVKQ 403 (404)
Q Consensus 358 tsgL--D~~~~~~i~~~l~~l~~-~g~tii~~tH~~~-------~~i~~~fd~~l~ 403 (404)
|+++ |+.....+++.|+++++ .|.|||+++|+.. ..+.+.+|+++.
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~ 188 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIR 188 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEE
Confidence 9888 99999999999999864 5999999999983 247888998875
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-18 Score=168.24 Aligned_cols=124 Identities=22% Similarity=0.257 Sum_probs=83.8
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhh
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~ 292 (404)
...+|++++|+||||||||||+++|+|+..+. ..|.|...+.+.. ...+...+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccc---------------
Confidence 67889999999999999999999999976542 1366654333321 111122233333211100
Q ss_pred cCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 015591 293 LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372 (404)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~ 372 (404)
.++..+ +||++|..+|++|++|||| |.++.. .
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~----~ 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIR----L 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHH----H
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHH----H
Confidence 122222 8999999999999999999 665543 3
Q ss_pred HHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 373 VKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 373 l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+.++++.|+|||+|+|+.+. + +.+|+++.
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~ 242 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA-A-KTIDRVVD 242 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH-H-HHHHHHHH
T ss_pred HHHHHhcCCEEEEEEccChH-H-HHHHHHhh
Confidence 34445679999999999984 3 78888764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-19 Score=188.75 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=100.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeee----------eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCcee
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDV----------TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSME 247 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~ 247 (404)
.+.++||++.|.... +++|+.+ ++.++. +||+|||||||||||++|+|+..|. .+
T Consensus 10 ~i~~~~l~~~~~~~~-----------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~-~s 74 (608)
T 3szr_A 10 SVAENNLCSQYEEKV-----------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR-GS 74 (608)
T ss_dssp ----------CHHHH-----------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------
T ss_pred hhhhhhhhHHHHHHH-----------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC-CC
Confidence 467888888774321 1222222 355554 9999999999999999999987652 36
Q ss_pred eEEEECCccCc------hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccc
Q 015591 248 GEIKIGGYPKV------QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321 (404)
Q Consensus 248 G~I~i~G~~~~------~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 321 (404)
|.|.++|.++. ...+++.++|++|+..+++.+||+||+.+......... .++. +
T Consensus 75 G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s---~- 134 (608)
T 3szr_A 75 GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS---H- 134 (608)
T ss_dssp --CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC---S-
T ss_pred CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc---h-
Confidence 99999998731 13467789999999888899999999987542211100 0111 1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCeEEEEecCCC
Q 015591 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP------TTGLDARAAAIIMRAVKNVVD--TGRTIVCTIHQPS 391 (404)
Q Consensus 322 ~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP------tsgLD~~~~~~i~~~l~~l~~--~g~tii~~tH~~~ 391 (404)
+++.++++...+|+++|+||| |+|||+..+..+.+.++++.+ .+.++++++|+.+
T Consensus 135 ---------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 135 ---------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp ---------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred ---------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 111222233458999999999 999999999999999999653 3678899999976
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-19 Score=163.02 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=90.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP 295 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~ 295 (404)
|++++|+||||||||||+++|+|+.+ . +| |.++|.+... ..+++.+||++|+.. . + ++++ +.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~-~~~l---~~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--T-RGPL---SRVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEETT--S--C-EEEE---EECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEecc--c--c-eehh---hccc---
Confidence 78999999999999999999999765 3 48 8888865422 235678899999541 1 1 1111 0000
Q ss_pred cCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHH
Q 015591 296 EINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTTGLDARAAAI 368 (404)
Q Consensus 296 ~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl-~IAr---aL~~~p~iLlLDE--PtsgLD~~~~~~ 368 (404)
++..+ ..+..++..+ ..+|+|||+++ ++++ |++.+|++||||| |+..+|......
T Consensus 66 -----------------~~~~~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CCCCSSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------ccCCccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 00110 0122444433 25999999988 4455 6899999999999 898999875554
Q ss_pred HHHHHHHHHhCCCeEEE--E--ecCCC
Q 015591 369 IMRAVKNVVDTGRTIVC--T--IHQPS 391 (404)
Q Consensus 369 i~~~l~~l~~~g~tii~--~--tH~~~ 391 (404)
+.+.+ +...++|+ + +|+.+
T Consensus 128 l~~~l----~~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 128 VRQTL----STPGTIILGTIPVPKGKP 150 (189)
T ss_dssp HHHHH----HCSSCCEEEECCCCCSSC
T ss_pred HHHHH----hCCCcEEEEEeecCCCCc
Confidence 44444 44555554 2 38864
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-18 Score=173.65 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=95.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+.++||++.| +++.+++++||+| +|+|+||||||||+++|+|...+.+..|.+.+++.+
T Consensus 11 ~l~~~~l~~~y-------------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQV-------------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCT-------------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeE-------------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 37778887754 3456999999998 999999999999999999976532212222222211
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
....+.+++++|.+...+.+|+.||+.++..... ......+.+.++ . .++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~~~~~~i~~~i~---------~--------~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------SNCWQPVIDYID---------S--------KFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHH---------H--------HHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhccc------hhhHHHHHHHHH---------H--------HHHHHHHH
Confidence 1123457899998777778899999887643210 000011111121 1 25667788
Q ss_pred HHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 338 RLTIAVELVANPS---IIFMDEPT-TGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 338 Rl~IAraL~~~p~---iLlLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
|++|||+++.+|+ +|++|||| .+||+... +.++++. .+.+||+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9999999999999 99999999 69998863 4445554 4788888887654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-17 Score=166.22 Aligned_cols=176 Identities=18% Similarity=0.143 Sum_probs=111.6
Q ss_pred CceeeeeeeeeeeeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCC
Q 015591 202 KKLRLLYDVTGSLRPGVL--TALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQI 279 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~--~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~ 279 (404)
++.+ |+++|+++++|++ ++|+||||||||||+|+|+|.... |.-. ... .....++.++|++|++.+++.+
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~----g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE----GEPA-THT--QPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc----CCcC-CCC--CccceEeeEEEEeecCcccccc
Confidence 3455 9999999999999 999999999999999999997421 2211 110 1112345789999988877889
Q ss_pred CHHHHHHHHhhhhcCccCChh---hHHHHHHHHHHHc-CCC----CCcccc----cc--CCCCCCCCHHHHHHHHHHHHH
Q 015591 280 TVEESVIFSAWLRLAPEINSK---TKAEFVNEVLETI-ELD----GIKDSL----VG--IPGVNGLSTEQRKRLTIAVEL 345 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~~~~~~---~~~~~~~~~l~~l-~l~----~~~~~~----vg--~~~~~~LSgGqrqRl~IAraL 345 (404)
||.||+.|+..... ...... ......++.++.. ++. ...|.. +. .+..++|+-.+ +.|+++|
T Consensus 98 tv~D~~~~g~~~~~-~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 98 TIVSTVGFGDQINK-EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp EEEEEECCCC-CCH-HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred chhhhhhhhhcccc-chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 99999877542110 000000 1123344455543 332 122322 11 11123577666 7899999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecC
Q 015591 346 VANPSIIFMDEPTTGLDARAAAIIMRAVKN-VVDTGRTIVCTIHQ 389 (404)
Q Consensus 346 ~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~tH~ 389 (404)
..+++++++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999998986 76679999988864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-17 Score=154.61 Aligned_cols=129 Identities=17% Similarity=0.142 Sum_probs=85.0
Q ss_pred eeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCH----HHHH
Q 015591 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITV----EESV 285 (404)
Q Consensus 210 vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv----~e~l 285 (404)
-.-..++|++++|+||||||||||+++|+|+.++....|.|.+.+.+... ..++.++|++|++..++.+++ .|++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 34467999999999999999999999999987643367999998876432 234567899985433222222 1111
Q ss_pred HHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 015591 286 IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 365 (404)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~ 365 (404)
.+. .... +.| +++ +..++..++++||| ||+.+
T Consensus 88 ~~~-------------------------------~~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 88 EVF-------------------------------GNYY------GTS---REA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EET-------------------------------TEEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHH-------------------------------hccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 110 0000 111 221 34556668999999 99999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 366 AAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 366 ~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+.++.+.+. ++.||++++|+++
T Consensus 120 ~~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 120 AQQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHHHcc----CCEEEEEECCCHH
Confidence 999998775 5899999999975
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-16 Score=136.86 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 329 NGLSTEQRKRLTIAVELVA----NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~----~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
..||||||||++||++|+. +|+++||||||+|||+.++..+.+.|+++.+ +.++|++||+. .+++.+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 4699999999999999974 4699999999999999999999999999864 57899999996 46789999863
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-16 Score=141.55 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=95.5
Q ss_pred eeeeeeee-eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 205 RLLYDVTG-SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 205 ~iL~~vs~-~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
+.|+++.. .+++|++++|+||||||||||++.|++ ..+ .+.++++... .. +...+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~--~~v~~i~~~~-----------------~~-~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG--KKVAYVDTEG-----------------GF-SPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC--SEEEEEESSC-----------------CC-CHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC--CcEEEEECCC-----------------CC-CHHHHHH
Confidence 46777764 899999999999999999999999998 221 1333333221 10 0001111
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH--HHHHHHHHHHHhcC-CCEEEEeCCCCC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTTG 360 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG--qrqRl~IAraL~~~-p~iLlLDEPtsg 360 (404)
... ...... +++++.+. +. .++++ ++|++..+++++.+ |+++++||||+.
T Consensus 65 ~~~-------~~~~~~-------~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 65 MAE-------TRGLNP-------EEALSRFI--------LF-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHH-------TTTCCH-------HHHHHHEE--------EE-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHH-------hcCCCh-------HHHhhcEE--------EE-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 000 000100 12222211 11 23344 46789999999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHhC-CCeEEEEecCCC------------HHHHHhcccccc
Q 015591 361 LDARA--------AAIIMRAVKNVVDT-GRTIVCTIHQPS------------IDIFEAFDEVKQ 403 (404)
Q Consensus 361 LD~~~--------~~~i~~~l~~l~~~-g~tii~~tH~~~------------~~i~~~fd~~l~ 403 (404)
+|+.. ...+++.|++++++ |.|||+++|... ..+...+|.++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~ 181 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILR 181 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEE
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEE
Confidence 99732 34566668887654 899999999865 246778998875
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.6e-18 Score=151.55 Aligned_cols=152 Identities=13% Similarity=0.045 Sum_probs=93.8
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh-hhcceeEEeecCCCCCCCCCHHHHHHHHhhh
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-TFARVSGYCEQTDIHSPQITVEESVIFSAWL 291 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~ 291 (404)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.+.... ..++.++|++|... +..++.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~--~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG--VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS--SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC--CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 3679999999999999999999999997 22 48999998764211 11233567766432 356888988775432
Q ss_pred hcCccCChhhHHHHHHHHHHHcCCCCCc--cccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 015591 292 RLAPEINSKTKAEFVNEVLETIELDGIK--DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAII 369 (404)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i 369 (404)
........ .++.++...++.... +.. ...+|+|++||+.++|++.++|+++ +|+.....+
T Consensus 79 ~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 79 YAKEGYFV-----ILDGVVRPDWLPAFTALARP-----LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp HHHTSCEE-----EECSCCCTTTTHHHHTTCSC-----EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred HhccCCeE-----EEeccCcHHHHHHHHhcCCC-----eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 11000000 000000000110000 111 1259999999999999999999876 688888778
Q ss_pred HHHHHHHHhCCCeEEEEec
Q 015591 370 MRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 370 ~~~l~~l~~~g~tii~~tH 388 (404)
.+.++.+.+.+..+|.++|
T Consensus 141 ~~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 141 HSQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHHTTCCGGGGGGEEECTT
T ss_pred HHHHhccCcccccEEECCC
Confidence 7777666433334444443
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-16 Score=154.52 Aligned_cols=129 Identities=18% Similarity=0.278 Sum_probs=94.2
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
.+|++++ +++|++++|+||||||||||+++|+|++++. .+|+|.+.|.+.. ..++..+++++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 3677766 8999999999999999999999999987642 1599977766543 23445567777730
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
+++. . ..+ +.+|+++|..+|++|++|||+ |++
T Consensus 191 ----------------------------~g~~----~-------~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED----T-------KSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT----B-------SCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC----H-------HHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1211 0 124 468999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 365 AAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+.. .+++. +..|.+++.++|+.+ +.+.+|+++
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~ 254 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIV 254 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHH
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHH
Confidence 543 34443 346999999999976 567777764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-19 Score=172.19 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC------CceeeEEEECCccCch------------------hhhcceeEEe---e
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKTT------GSMEGEIKIGGYPKVQ------------------ETFARVSGYC---E 270 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~~------~~~~G~I~i~G~~~~~------------------~~~~~~~g~v---~ 270 (404)
++++|+|+||||||||+|.|.|.... .+..|+|.+||.++.. ..+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999997511 1245999999876421 1233445666 5
Q ss_pred cCCCCCCCCCHHHHHHHHhhhhcCccC---ChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc
Q 015591 271 QTDIHSPQITVEESVIFSAWLRLAPEI---NSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 347 (404)
Q Consensus 271 Q~~~~~~~~Tv~e~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~ 347 (404)
|....++..++.||..++......... ........++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 655555677777776553110000000 00000011122233344444444432 489999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFD 399 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd 399 (404)
+|+++ ||| ..+.+.|+++. .+.||++++|++. +.-..||
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 99987 998 67888888875 5899999999864 3333443
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-18 Score=170.26 Aligned_cols=149 Identities=12% Similarity=0.091 Sum_probs=90.6
Q ss_pred eeeeeeeeeeC--CcEEEEEcCCCCcHHHHHHHHhCCCCCCcee----eEEEEC----CccC--chhhhcceeEEeecCC
Q 015591 206 LLYDVTGSLRP--GVLTALMGVSGAGKTTLLDVLAGRKTTGSME----GEIKIG----GYPK--VQETFARVSGYCEQTD 273 (404)
Q Consensus 206 iL~~vs~~i~~--Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~----G~I~i~----G~~~--~~~~~~~~~g~v~Q~~ 273 (404)
+.+.|++.|++ |+.++|+||||||||||+++|+|++.+ .+ |++.++ |.+. ....+ +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 45689999999 999999999999999999999998775 35 555442 2111 00111 1122332211
Q ss_pred CCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh-cCCCEE
Q 015591 274 IHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV-ANPSII 352 (404)
Q Consensus 274 ~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~-~~p~iL 352 (404)
. .+..|+.||+.+. + .+..++.. ..+|+|++||..+++++. .+|+++
T Consensus 234 ~-~~~~t~~~nl~~~-------------------------~-~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 I-DYAVRHSHKIAFI-------------------------D-TDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp H-HHHHHHCSSEEEE-------------------------S-SCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred H-HHHHhccCCEEEE-------------------------e-CCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 0 0111111111110 0 00111111 135667778888888774 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q 015591 353 FMDE---PT------TGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQ 389 (404)
Q Consensus 353 lLDE---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~ 389 (404)
+||| |+ .++|+..+..+.+.|+++.+ .|.+||+++|.
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 9999 65 58999999999999988754 48999999975
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-15 Score=149.19 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=94.8
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC-chhhhcceeEEee-cCCCCCCCCCHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK-VQETFARVSGYCE-QTDIHSPQITVEE 283 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~-~~~~~~~~~g~v~-Q~~~~~~~~Tv~e 283 (404)
+++++|+.+++|++++|+||||||||||+++|+|++++. +|.|.++|... .....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 449999999999999999999999999999999998764 59999998532 1122456678887 43220
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
+++++..+|-.|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222366677778888899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 364 RAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
.++.+.|+.+.....|++.++|..+ ....+||+.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~ 297 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLA 297 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHH
Confidence 2455667766543457899999976 456667654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-18 Score=158.67 Aligned_cols=145 Identities=13% Similarity=0.159 Sum_probs=94.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---CCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhh-
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLA---GRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWL- 291 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~---g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~- 291 (404)
++++++|+||||||||||+++|+ |+..+ ..|+|.++|.+.. ....+.+.+++|+....+..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~--~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL--SSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE--EHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 98665 4588877765421 12233345566766777888999999764321
Q ss_pred hc----CccCChhhHHHHHHHHHHHcCC--------------CCCccccccCCCCCCCCHHHHHHHHHHHHH-hcCCCEE
Q 015591 292 RL----APEINSKTKAEFVNEVLETIEL--------------DGIKDSLVGIPGVNGLSTEQRKRLTIAVEL-VANPSII 352 (404)
Q Consensus 292 ~~----~~~~~~~~~~~~~~~~l~~l~l--------------~~~~~~~vg~~~~~~LSgGqrqRl~IAraL-~~~p~iL 352 (404)
.. ........ ..++.+.+.... ....++. +..||| |+ +++ +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 00 00111111 122222211111 1111222 235888 55 777 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHH
Q 015591 353 FMD----EPTTGLDARAAAIIMRAVKNVV 377 (404)
Q Consensus 353 lLD----EPtsgLD~~~~~~i~~~l~~l~ 377 (404)
+|| |||++||..++..+.+.++++.
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHH
Confidence 999 9999999999998888887764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-16 Score=138.97 Aligned_cols=81 Identities=22% Similarity=0.096 Sum_probs=65.9
Q ss_pred cCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCC
Q 015591 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 201 ~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
++++.+++++||++++|++++|+||||||||||+|+|+|.. + .+|+|.++|.++......+ .+++|+..++ .+|
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~lt 90 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCS
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCC
Confidence 34567899999999999999999999999999999999987 5 3599999998764211111 2788877666 899
Q ss_pred HHHHHHH
Q 015591 281 VEESVIF 287 (404)
Q Consensus 281 v~e~l~~ 287 (404)
+.||+.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999965
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-17 Score=144.88 Aligned_cols=138 Identities=16% Similarity=0.226 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCc------hhhhc-ceeE----EeecCCCCCCCCCHHHHH
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKV------QETFA-RVSG----YCEQTDIHSPQITVEESV 285 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~------~~~~~-~~~g----~v~Q~~~~~~~~Tv~e~l 285 (404)
++++|+|+||||||||+++|+|++.+. ...|.|.++|.++. ...++ +.+| ++.|+..++ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i---- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----I---- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----E----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----E----
Confidence 589999999999999999999987653 12599999998632 22444 3566 777754433 0
Q ss_pred HHHhhhhcCccCChhhHHHHHHHHHHH-cCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE-------EEeCC
Q 015591 286 IFSAWLRLAPEINSKTKAEFVNEVLET-IELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII-------FMDEP 357 (404)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iL-------lLDEP 357 (404)
+.. ..+....++++++. +. ..|+.+++ +||||||||++||||++.+|++. .=|.|
T Consensus 75 ------~~~----~~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RRV----SEEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EEC----CHHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ecC----ChhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 000 01112245666665 43 46888875 59999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 015591 358 TTG---LDARAAAIIMRAVKNVVDTG 380 (404)
Q Consensus 358 tsg---LD~~~~~~i~~~l~~l~~~g 380 (404)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 33444567777776655554
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-15 Score=154.77 Aligned_cols=153 Identities=15% Similarity=0.130 Sum_probs=103.0
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hh--hcceeEEeecCCCCCC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ET--FARVSGYCEQTDIHSP 277 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~--~~~~~g~v~Q~~~~~~ 277 (404)
-+++||++++|++++|+|+||||||||+++|+|++.+. +|+|.++|.+... .. .++.++|++|....++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 36899999999999999999999999999999987653 5999998765421 11 2556899999887778
Q ss_pred CCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh-cCCC-EEEEe
Q 015591 278 QITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV-ANPS-IIFMD 355 (404)
Q Consensus 278 ~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~-~~p~-iLlLD 355 (404)
..|+++|+.++..... .+ -+++..|+.+... .+-...+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~~~--Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNI--DV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTTC--SE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCC--CE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8899999988642110 00 0111122211111 12234467888888764 4464 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEec
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIH 388 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH 388 (404)
.||+|.|.. +.++.+.+ .|.|.+++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 589887654 23344433 4899999999
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-17 Score=145.92 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=99.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCcc
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE 296 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~ 296 (404)
|++++|+||||||||||+++|++. .+|.+.++|.+... ....++++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999972 24889998864321 1234666665433345578888776543211000
Q ss_pred CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC--CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHH
Q 015591 297 INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL--STEQRKRLTIAV------ELVANPSIIFMDEPTTGLDARAAAI 368 (404)
Q Consensus 297 ~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L--SgGqrqRl~IAr------aL~~~p~iLlLDEPtsgLD~~~~~~ 368 (404)
. ..+++.+......+. + ..+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~-~-----~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA-L-----AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH-H-----HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH-H-----HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 0 124 778888887887 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCCeEEEEecC-CCHHHHHhccccc
Q 015591 369 IMRAVKNVVDTGRTIVCTIHQ-PSIDIFEAFDEVK 402 (404)
Q Consensus 369 i~~~l~~l~~~g~tii~~tH~-~~~~i~~~fd~~l 402 (404)
.+.++.+.+.+.++|.++|+ ++ ++.+.+|+++
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~ 168 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK 168 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh
Confidence 88888876568899999998 75 6777888764
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-17 Score=159.93 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=105.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh-------hhcceeEEeecCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE-------TFARVSGYCEQTDIH 275 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-------~~~~~~g~v~Q~~~~ 275 (404)
.+.+|+++|+++++|++++|+|+||||||||+++|+|+..+. +|+|.+.|.+.... ..++.+++++|++..
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~--~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA--GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC--CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 356899999999999999999999999999999999976653 49999988764321 234568899997766
Q ss_pred CCCC------------CHHHHHHHHhh-------------------hhcCc-------cCChhhHHH----HHHHHHHHc
Q 015591 276 SPQI------------TVEESVIFSAW-------------------LRLAP-------EINSKTKAE----FVNEVLETI 313 (404)
Q Consensus 276 ~~~~------------Tv~e~l~~~~~-------------------~~~~~-------~~~~~~~~~----~~~~~l~~l 313 (404)
++.. +++|.+..... ..... ........+ .+.+....+
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEE
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEE
Confidence 5431 23333311000 00000 000000000 011111111
Q ss_pred CCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 015591 314 ELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378 (404)
Q Consensus 314 ~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~ 378 (404)
.+ +..|.. ....+|+|++|++..|++++. +|++++ ||++|......+.+.|.++.+
T Consensus 199 vl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 11 112211 012479999999999999987 688875 999999999999999988653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-15 Score=147.19 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=97.4
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcc--eeEEeecCCCCCCCCCHHH
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFAR--VSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~--~~g~v~Q~~~~~~~~Tv~e 283 (404)
..++|++++|+||||||||||++.|+|++.+. .|+|.+.|.+... ..+++ .+.+++|.....|.++++|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 34789999999999999999999999987653 5999999987531 11223 3458999888888899999
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 363 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~ 363 (404)
|+.++...... . -+++..|+.+..+.. .++.-.|+|++..++++++||.+| +.
T Consensus 203 ~l~~~~~~~~d--~----------vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t-~~-- 255 (328)
T 3e70_C 203 AIQHAKARGID--V----------VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALA-GN-- 255 (328)
T ss_dssp HHHHHHHHTCS--E----------EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGG-TT--
T ss_pred HHHHHHhccch--h----------hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHH-HH--
Confidence 99875321100 0 012222332221111 223334899999888888999555 43
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCC
Q 015591 364 RAAAIIMRAVKNVVD-TGRTIVCTIHQP 390 (404)
Q Consensus 364 ~~~~~i~~~l~~l~~-~g~tii~~tH~~ 390 (404)
.+++.++.+.+ .+.|+|++||..
T Consensus 256 ----~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 256 ----AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp ----HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred ----HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 44555566553 589999999954
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-14 Score=142.71 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=85.3
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceeeEEEEC-CccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT-TGSMEGEIKIG-GYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~-~~~~~G~I~i~-G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
-++++++. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.... ...++.+++++|...+++..+++|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~--~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL--TNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC--CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc--cCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHH
Confidence 46677765 4799999999999999999999999876 53 5999887 65432 234567899999887788888988
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHH
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVEL 345 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL 345 (404)
+ .. ......+..+.+.++++.+++.+..+... .+|| ||+||++||+++
T Consensus 281 ~---~l-----~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F---GL-----WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C---CC-----CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h---hh-----cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 4 11 12333444566778888889887777764 3699 999999999864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-14 Score=133.60 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=77.5
Q ss_pred eeeee-eeeeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCC---ceeeEEEECCccC-chhh---hcceeEEeecCCCCC
Q 015591 207 LYDVT-GSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTG---SMEGEIKIGGYPK-VQET---FARVSGYCEQTDIHS 276 (404)
Q Consensus 207 L~~vs-~~i~~Ge~~alvG~sGaGKSTLl~~L~g--~~~~~---~~~G~I~i~G~~~-~~~~---~~~~~g~v~Q~~~~~ 276 (404)
|+.+- .-+++|++++|+||||||||||++.|++ ...+. ...|.+++++.+. .... ..+.+++.+|
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~----- 87 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS----- 87 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----
Confidence 44433 5789999999999999999999999998 33320 1246777766542 1110 1111111111
Q ss_pred CCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH-HHHHHHHHh--cCCCEEE
Q 015591 277 PQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK-RLTIAVELV--ANPSIIF 353 (404)
Q Consensus 277 ~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq-Rl~IAraL~--~~p~iLl 353 (404)
++++.+. +. ...+..+.. .+.-+.+++ .+|++++
T Consensus 88 -------------------------------~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~lli 124 (243)
T 1n0w_A 88 -------------------------------DVLDNVA--------YA----RAFNTDHQTQLLYQASAMMVESRYALLI 124 (243)
T ss_dssp -------------------------------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEE
T ss_pred -------------------------------HHhhCeE--------EE----ecCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 1111110 00 123444432 223233333 5899999
Q ss_pred EeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CCeEEEEecCCC
Q 015591 354 MDEPTTGLDAR-------A-----AAIIMRAVKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 354 LDEPtsgLD~~-------~-----~~~i~~~l~~l~~~-g~tii~~tH~~~ 391 (404)
+|||++.+|+. . ...+++.|++++++ |.|||+++|...
T Consensus 125 iD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 125 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp EETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred EeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 99999999985 3 34566666666654 999999999654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-14 Score=126.75 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=42.7
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH
Q 015591 346 VANPSIIFMDEPTT-GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID 393 (404)
Q Consensus 346 ~~~p~iLlLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~ 393 (404)
+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999985 9999999999999998877899999999988644
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-14 Score=125.85 Aligned_cols=45 Identities=9% Similarity=0.212 Sum_probs=37.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe-EEEEecCCC
Q 015591 346 VANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRT-IVCTIHQPS 391 (404)
Q Consensus 346 ~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~t-ii~~tH~~~ 391 (404)
+.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6655588899999998877888 899999654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-15 Score=150.69 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=96.7
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHH
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVI 286 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~ 286 (404)
-++++++++.|+.++|+|+||||||||+++|+|..+ .+.+.+.. .....++++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999632 12232211 11223444444320 0011111100
Q ss_pred HHhhhhcCccCChhh--HHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 287 FSAWLRLAPEINSKT--KAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 287 ~~~~~~~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
+.............. ..++++.++..+++. +.. ...||+|++||+.+|++|+.+|.+|++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 000000000010000 001112223333332 222 236999999999999999999999999 999998
Q ss_pred HHHHHHHHHHH-HHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 365 AAAIIMRAVKN-VVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 365 ~~~~i~~~l~~-l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
.+ ..++.+++ +.+.|.+++.+|..-...+-++++.+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 76 44444444 44457777766654444566666654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=137.33 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=63.5
Q ss_pred CCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 329 NGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 329 ~~LSgGqrqRl------~IAraL~~~-p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567899999 99999999999999999999999999874 4578999999975 57889987
Q ss_pred cc
Q 015591 402 KQ 403 (404)
Q Consensus 402 l~ 403 (404)
+.
T Consensus 356 ~~ 357 (371)
T 3auy_A 356 IN 357 (371)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.9e-15 Score=141.80 Aligned_cols=133 Identities=12% Similarity=0.058 Sum_probs=85.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhh---h
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAW---L 291 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~---~ 291 (404)
+++.+++|.|+||||||||.+.|++++.+ .| . . ++.+.+|.|++.+++ .+.++|+.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCC-hHHHHHHhccccccch
Confidence 56889999999999999999999986542 12 0 1 344556699777664 588999987631 1
Q ss_pred hcCccCChhhHHHHHHHHHHHcCCCC----CccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 292 RLAPEINSKTKAEFVNEVLETIELDG----IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
........+...+...+.++.+.-.. .....+... ...+||||+||+.+|++...+|+|||+||||+++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y-~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKY-DKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCE-ETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccC-ccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 11001112222344556666553220 011111111 2469999999999973322299999999999999985
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-16 Score=156.56 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=96.3
Q ss_pred cccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhhcce
Q 015591 193 EMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETFARV 265 (404)
Q Consensus 193 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~ 265 (404)
.++++++.++...+|+++ +. ++|++++|+|||||||||||++|+|...+. +|+|.+.|.++.. ...++.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccc
Confidence 445555555556688888 54 899999999999999999999999977654 5999998876421 112233
Q ss_pred eEEee---------cCCCC--CCC----CCHHHHHHHHhhhhcC-ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 266 SGYCE---------QTDIH--SPQ----ITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 266 ~g~v~---------Q~~~~--~~~----~Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
+++.+ |++.. +.. .|+.+++.++..-+.. .........+.++ .+..+++.+.. .. .
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~~--~~-----~ 292 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPFL--IS-----S 292 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHHH--HH-----H
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHHH--HH-----H
Confidence 45544 76543 232 5899999876421110 0011111112233 45566776532 21 3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEE
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIF 353 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLl 353 (404)
.|||||+|| |||+|+.+|++..
T Consensus 293 ~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 293 SLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHH--hhhhhcCCCCccC
Confidence 699999999 9999999999875
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-16 Score=165.05 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=107.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
..+++++++.+++|+.++|+||||||||||+++|+|+.++. +|.|.++|.+.........++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 45789999999999999999999999999999999988764 5999998865211111233455554332112234444
Q ss_pred HHHHHhhhhcC----ccCChhhHH------------------HHHHHHHHHcCCCC--C-------ccccccCCCCCCCC
Q 015591 284 SVIFSAWLRLA----PEINSKTKA------------------EFVNEVLETIELDG--I-------KDSLVGIPGVNGLS 332 (404)
Q Consensus 284 ~l~~~~~~~~~----~~~~~~~~~------------------~~~~~~l~~l~l~~--~-------~~~~vg~~~~~~LS 332 (404)
++....+.+.. .++...+.. ..+.++++++.... . .+..+.. ...+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~--~~~~s 402 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQ--TMWVR 402 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE--EEEES
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEE--EEEEe
Confidence 44332211100 011111100 01223333333211 1 1111110 12479
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE--EecCCCHHHHHhcc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVC--TIHQPSIDIFEAFD 399 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~--~tH~~~~~i~~~fd 399 (404)
+|||||.++|. + | |+|||+.....+++.|.++.+.|+|+++ +||+++ ++...++
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 99999877651 2 7 9999998887777777777666899985 899986 5665554
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.9e-13 Score=128.89 Aligned_cols=136 Identities=16% Similarity=0.068 Sum_probs=73.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCcc
Q 015591 219 LTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPE 296 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g-~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~ 296 (404)
.+.|.||||+|||||+++|++ +..+. .|.+.++|.+... ...+..+++++|.+.+....+- ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 102 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPG--VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-------------MG 102 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTT--CCC------------------CCEECSSEEEECCC----------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC--CCeEEecceeecccccccceeeeecccceEEecHhh-------------cC
Confidence 389999999999999999999 55543 4999998875432 1124556788775532111100 00
Q ss_pred CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 297 INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 297 ~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
... ...+++.++.+......+... .||| +..+|+++|+|||++ ||+.++..+.+.+.+.
T Consensus 103 ~~~---~~~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 103 NND---RIVIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp -CC---HHHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred Ccc---hHHHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 000 011233333321111111110 2565 788999999999999 9999999999999886
Q ss_pred HhCCCeEEEEecCCC
Q 015591 377 VDTGRTIVCTIHQPS 391 (404)
Q Consensus 377 ~~~g~tii~~tH~~~ 391 (404)
. .+.++|+++|+++
T Consensus 162 ~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMS 175 (354)
T ss_dssp T-TTEEEEEEESCSC
T ss_pred c-CCCEEEEEeCCHH
Confidence 4 4789999999986
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.8e-13 Score=132.85 Aligned_cols=136 Identities=21% Similarity=0.238 Sum_probs=79.3
Q ss_pred eeeee-eeeeeCCcEEEEEcCCCCcHHHHHHHH--hCCCCCC---ceeeEEEECCccC-chhh---hcceeEEeecCCCC
Q 015591 206 LLYDV-TGSLRPGVLTALMGVSGAGKTTLLDVL--AGRKTTG---SMEGEIKIGGYPK-VQET---FARVSGYCEQTDIH 275 (404)
Q Consensus 206 iL~~v-s~~i~~Ge~~alvG~sGaGKSTLl~~L--~g~~~~~---~~~G~I~i~G~~~-~~~~---~~~~~g~v~Q~~~~ 275 (404)
-|+.+ ..-+++|++++|+||||||||||++.| .+..++. ...+.+++++... .... ..+.+++.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----
Confidence 34443 367999999999999999999999954 4554331 1124677776542 1110 1111121111
Q ss_pred CCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH-HHHHHHHHHHHHh--cCCCEE
Q 015591 276 SPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST-EQRKRLTIAVELV--ANPSII 352 (404)
Q Consensus 276 ~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg-GqrqRl~IAraL~--~~p~iL 352 (404)
++.+|+.+ . ...+. .+.+.+.-+++++ .+|+++
T Consensus 242 ----~vleni~~------------------------------------~----~~~~~~~~~~~l~~~~~~l~~~~~~ll 277 (400)
T 3lda_A 242 ----DALNNVAY------------------------------------A----RAYNADHQLRLLDAAAQMMSESRFSLI 277 (400)
T ss_dssp ----HHHHTEEE------------------------------------E----ECCSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred ----hHhhcEEE------------------------------------e----ccCChHHHHHHHHHHHHHHHhcCCceE
Confidence 12222111 0 01122 2233333333333 469999
Q ss_pred EEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCeEEEEecC
Q 015591 353 FMDEPTTGLDARAA------------AIIMRAVKNVVDT-GRTIVCTIHQ 389 (404)
Q Consensus 353 lLDEPtsgLD~~~~------------~~i~~~l~~l~~~-g~tii~~tH~ 389 (404)
++||||+.+|+... .++++.|++++++ |.|||+++|.
T Consensus 278 VIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 278 VVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp EEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred EecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 99999999996533 5678888888765 9999999998
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-15 Score=134.57 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=88.1
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhh
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKTTG-SMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~ 292 (404)
.++|++++|+||||||||||+++|+|++.+. ...|.|.++|...... ..+++..... +
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~--------------------~~~~~~~~~~-~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR--------------------LLEPRGLLPR-K 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH--------------------HHGGGTCGGG-T
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH--------------------HHHHhccccc-C
Confidence 5789999999999999999999999976531 1246666655443211 1111100000 0
Q ss_pred cCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHH-HHHhcCCCEEEEeCCC-----------CC
Q 015591 293 LAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA-VELVANPSIIFMDEPT-----------TG 360 (404)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IA-raL~~~p~iLlLDEPt-----------sg 360 (404)
.... ........+.+..+...+..+......+. .+|+||+||+++| ++++.++.++++|||. .-
T Consensus 78 ~~~~---~~~~~~~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~ 153 (208)
T 3c8u_A 78 GAPE---TFDFEGFQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153 (208)
T ss_dssp TSGG---GBCHHHHHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEE
T ss_pred CCCc---hhhHHHHHHHHHHHhcCCceecccCCccc-cCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEE
Confidence 0000 00111122223222111222223333333 5899999999998 8999999998999985 34
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEec
Q 015591 361 LDARAAAIIMRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 361 LD~~~~~~i~~~l~~l~~~g~tii~~tH 388 (404)
+|......+.+.+++..+.|+|.--+.|
T Consensus 154 vd~~~~~~~~R~~~R~~~~g~t~~~~~~ 181 (208)
T 3c8u_A 154 LEVPMADLEARLVQRWLDHGLNHDAAVA 181 (208)
T ss_dssp ECCCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 6777777777777776556765444433
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-13 Score=134.39 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=80.7
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE---CCccCchh--hhc-ceeEEeecCCCCC-----CCCCH
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI---GGYPKVQE--TFA-RVSGYCEQTDIHS-----PQITV 281 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i---~G~~~~~~--~~~-~~~g~v~Q~~~~~-----~~~Tv 281 (404)
.+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|.+.... ..+ +.+||++|.+.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~--~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELR--TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCC--CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCc--ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 87664 599999 88765321 122 2579999987543 67899
Q ss_pred HHHH--HHHhh----hhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCCCCHHHHHHHHHHHH
Q 015591 282 EESV--IFSAW----LRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNGLSTEQRKRLTIAVE 344 (404)
Q Consensus 282 ~e~l--~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqRl~IAra 344 (404)
|++ .|+.. ++...-....+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 45410 111100111223356889999999975 556554 3599988999999873
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-14 Score=139.73 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=74.4
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeee-------------------eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSL-------------------RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|
T Consensus 38 i~~~~v~~~y---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 38 LSLEEVAEIY---------------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCHHHHHHTH---------------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cchHhHHHHH---------------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6677877755 24788899888 8999999999999999999999999
Q ss_pred CCC--CCceeeEEEE---CCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhh
Q 015591 240 RKT--TGSMEGEIKI---GGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLR 292 (404)
Q Consensus 240 ~~~--~~~~~G~I~i---~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~ 292 (404)
+.. + .+|+|.+ +|..... ..++.++++ |...+++.+|+.+++.+...++
T Consensus 103 ~l~~~~--~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 103 LLSRWP--EHRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHTTST--TCCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhhCC--CCCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 755 4 3599999 8876532 234557888 7666778889999998865443
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.4e-15 Score=135.01 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=72.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----------ceeeEEEECCccC---chhhhcceeEEeecCCCCCCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTG-----------SMEGEIKIGGYPK---VQETFARVSGYCEQTDIHSPQIT 280 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~-----------~~~G~I~i~G~~~---~~~~~~~~~g~v~Q~~~~~~~~T 280 (404)
++|++++|+||||||||||+++|+|+++.. +..|+ ++|.+. ....+++.+ .| +.+++..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~-~~~l~~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AA-GDFIEHAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HH-TCEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---Hc-CCCEeeee
Confidence 589999999999999999999999965310 12354 355432 122233322 23 22222333
Q ss_pred HHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH----HHHHHH-HHhcCCCEEEEe
Q 015591 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK----RLTIAV-ELVANPSIIFMD 355 (404)
Q Consensus 281 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq----Rl~IAr-aL~~~p~iLlLD 355 (404)
+.+|+ ++. ..+.++++++.-. ....+. + + .|-++ ++ +|+ +++.+|++++||
T Consensus 76 ~~~n~-~g~------------~~~~i~~~~~~~~-~~~~~~--~------~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YGT------------SKEAVRAVQAMNR-ICVLDV--D------L-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EEE------------EHHHHHHHHHTTC-EEEEEC--C------H-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CCC------------CHHHHHHHHHcCC-cEEEEC--C------H-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 33333 210 1122344443210 001110 0 0 11111 12 456 788889999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 015591 356 EPTTGLDARAAAIIMRAVKNVV 377 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~ 377 (404)
|+|+++|..+++.|.+.|.++.
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~ 153 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAAR 153 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999887764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-15 Score=142.79 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=95.9
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCC-CCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTD-IHSPQ 278 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~-~~~~~ 278 (404)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++.. ....+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 999999999999999999997653 789999976432 12234466777653 33455
Q ss_pred CCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 279 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
.++.|++.+....+.. ... + ......+... ..|||||+||+.|++|+..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r~~---------~~~----~--~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD---------RET----G--ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhcccCC---------Ccc----h--HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 5666665442211100 000 0 1122233333 259999999999999999999975 9986
Q ss_pred C------------CCCHHHHHHHHHHH
Q 015591 359 T------------GLDARAAAIIMRAV 373 (404)
Q Consensus 359 s------------gLD~~~~~~i~~~l 373 (404)
. --|...+..|++.+
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4 34677777776654
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-13 Score=135.71 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=92.1
Q ss_pred CceeeeeeeeeeeeCC-------cEEEEEcCCCCcHHHHHHHHhCCCCC--CceeeEEEECCccCch--hh-hcceeEEe
Q 015591 202 KKLRLLYDVTGSLRPG-------VLTALMGVSGAGKTTLLDVLAGRKTT--GSMEGEIKIGGYPKVQ--ET-FARVSGYC 269 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~G-------e~~alvG~sGaGKSTLl~~L~g~~~~--~~~~G~I~i~G~~~~~--~~-~~~~~g~v 269 (404)
+...+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.++.. .. .++.+.++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 4456899999999877 89999999999999999999996421 1235666555543221 11 13568899
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhhcCcc-CChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcC
Q 015591 270 EQTDIHSPQITVEESVIFSAWLRLAPE-INSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 348 (404)
Q Consensus 270 ~Q~~~~~~~~Tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~ 348 (404)
.|.+.+.+ ++.|++..........- .......+.++..+..+++.. +++.. ..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce------
Confidence 88665544 78888854322111000 001111223333344344433 33332 36999999998654
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVVD 378 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~ 378 (404)
.+||+.+...+.++|++.++
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHH
Confidence 67778788888888888764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=111.40 Aligned_cols=129 Identities=16% Similarity=0.066 Sum_probs=86.7
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHH
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIF 287 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~ 287 (404)
+++++. +|++++++|+||+||||++..|++...+. .|+|.+.+.+...... . +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~------~-------------~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAA------R-------------EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHH------H-------------HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhH------H-------------HHH--
Confidence 678888 99999999999999999999999976532 3778776654321100 0 000
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHH
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP-TTGLDARAA 366 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP-tsgLD~~~~ 366 (404)
..+.+..++.-... + ......+.+|.+|+++...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01112234432110 0 12345566789999998899999999999 999999888
Q ss_pred HHHHHHHHHHHhCCCeEEEEec
Q 015591 367 AIIMRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 367 ~~i~~~l~~l~~~g~tii~~tH 388 (404)
..+.+..+.+. ...+++++..
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~~ 220 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLDA 220 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEEG
T ss_pred HHHHHHhhhcC-CCEEEEEEeC
Confidence 88887776653 3455555543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-13 Score=136.05 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=102.0
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCC----------CCCceeeEEEECCccCch--h--hhccee---EEeecCCCC
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRK----------TTGSMEGEIKIGGYPKVQ--E--TFARVS---GYCEQTDIH 275 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~----------~~~~~~G~I~i~G~~~~~--~--~~~~~~---g~v~Q~~~~ 275 (404)
.+++|..++|+|+||||||||+|+|+|.. +..+..|.+.++|..... . ..++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 123457999998843211 0 112222 355565666
Q ss_pred CCCCCHHHHH--HHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCC--CE
Q 015591 276 SPQITVEESV--IFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP--SI 351 (404)
Q Consensus 276 ~~~~Tv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p--~i 351 (404)
....+..|++ .|...++.. +.++..++..+ +.. ...++++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 6666665554 333322211 11222222221 111 11255542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCeEEEEecCCCHHHHHhccccc
Q 015591 352 IFMDEPTTGLDARAAAIIMRAVKNV-VDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 352 LlLDEPtsgLD~~~~~~i~~~l~~l-~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
+++|||+.++|+....+.++.++++ .+.|.|++ +|... ++.+.||+++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~ 193 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVY 193 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHH
Confidence 9999999999999999999999988 66677764 99875 6788888775
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.6e-11 Score=116.55 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=75.2
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFS 288 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~ 288 (404)
.+++..++|++++|+|+|||||||++..|++...+. .|+|.+.+.+.. +. ...|.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~----r~---------------~a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTF----RA---------------AAIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTT----CH---------------HHHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccc----cH---------------HHHHH----
Confidence 356667899999999999999999999999976532 366766554321 00 00111
Q ss_pred hhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHH
Q 015591 289 AWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL---TIAVELVANPSIIFMDEPTTGLDARA 365 (404)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl---~IAraL~~~p~iLlLDEPtsgLD~~~ 365 (404)
...+.+.+++.. + ...|+|+.+++ ++++++..+|+++|+|||.. ...
T Consensus 151 -----------------L~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~ 200 (306)
T 1vma_A 151 -----------------LKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHT 200 (306)
T ss_dssp -----------------HHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSC
T ss_pred -----------------HHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhh
Confidence 122333445432 1 14789999999 99999999999999999974 233
Q ss_pred HHHHHHHHHHH
Q 015591 366 AAIIMRAVKNV 376 (404)
Q Consensus 366 ~~~i~~~l~~l 376 (404)
...+++.|+++
T Consensus 201 ~~~l~~eL~~l 211 (306)
T 1vma_A 201 KKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455444444
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-11 Score=120.06 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=65.0
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE---CCccCchh--hh-cceeEEeecCCC-----------
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI---GGYPKVQE--TF-ARVSGYCEQTDI----------- 274 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i---~G~~~~~~--~~-~~~~g~v~Q~~~----------- 274 (404)
|.+.+|++++|+||||||||||+|+|+|+..+. +|+|.+ +|.+.... .. .+.+||++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~--~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR--VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc--ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 345679999999999999999999999988764 599999 88765321 11 135799999864
Q ss_pred -----CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCC-CCcccc
Q 015591 275 -----HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-GIKDSL 322 (404)
Q Consensus 275 -----~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~ 322 (404)
++|.+|+ ||+.|+.. .. ..+....+.++++.++|. +..+..
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~-~~-----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDC-NH-----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTC-CS-----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCC-cC-----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 4788888 98888531 11 112234578899999985 444444
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=9.6e-12 Score=120.58 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=65.8
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE---CCccCch-hhhcce-eEEeecCCCCCC----CCCHH
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI---GGYPKVQ-ETFARV-SGYCEQTDIHSP----QITVE 282 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i---~G~~~~~-~~~~~~-~g~v~Q~~~~~~----~~Tv~ 282 (404)
+++.+|++++|+||||+|||||+|+|+|...+ .+|+|.+ +|+.... ....+. .||++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL--RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc--cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 56789999999999999999999999998765 3599998 7765432 112222 799999876654 6789
Q ss_pred HHHH--HHhh--h----hcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Q 015591 283 ESVI--FSAW--L----RLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKR 338 (404)
Q Consensus 283 e~l~--~~~~--~----~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqR 338 (404)
|++. |... + +...-....+....++++++.+++.+...... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 3311 1 10100011122345788999999875332221 1477777763
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.09 E-value=8e-12 Score=115.69 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=41.1
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCeEEEEecCCCHH-------HHHhcccccc
Q 015591 347 ANPSIIFMDEPTTGL--DARAAAIIMRAVKNVV-DTGRTIVCTIHQPSID-------IFEAFDEVKQ 403 (404)
Q Consensus 347 ~~p~iLlLDEPtsgL--D~~~~~~i~~~l~~l~-~~g~tii~~tH~~~~~-------i~~~fd~~l~ 403 (404)
.+|+++++|+|++.+ |+....+++..+.+++ +.|.|||+++|..... +.+.+|.++.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~ 193 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIR 193 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEE
Confidence 579999999999988 6544555666666654 5699999999987531 4567787764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-14 Score=130.75 Aligned_cols=39 Identities=28% Similarity=0.225 Sum_probs=22.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh-CCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA-GRKT 242 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~-g~~~ 242 (404)
.+..+++||++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34688999999999999999999999999999999 9764
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-10 Score=118.93 Aligned_cols=175 Identities=13% Similarity=0.119 Sum_probs=103.8
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee-EEEECCccCchhhhc-ceeEEeecCCCCCCCCCH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG-EIKIGGYPKVQETFA-RVSGYCEQTDIHSPQITV 281 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G-~I~i~G~~~~~~~~~-~~~g~v~Q~~~~~~~~Tv 281 (404)
...|+++.+-+++|+++.|.|++|+|||||+..+++..... .| .|.+.+.......+. |..+.... ...
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH
Confidence 34788999889999999999999999999999998743211 13 344333222211111 11000000 000
Q ss_pred HHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCC
Q 015591 282 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTT 359 (404)
Q Consensus 282 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~--~~p~iLlLDEPts 359 (404)
+.+. .. .... +....+.+.++.++..++. +..+ .++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~l~------~g-~l~~-~~~~~~~~a~~~l~~~~l~---i~d~--~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QNLR------TG-KLTP-EDWGKLTMAMGSLSNAGIY---IDDT--PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HHHH------TS-CCCH-HHHHHHHHHHHHHHSSCEE---EECC--TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HHHh------cC-CCCH-HHHHHHHHHHHHHhcCCEE---EECC--CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 1111 00 1111 2223344455544433322 1111 258999876 5667776 6799999999998
Q ss_pred CCC--------HHHHHHHHHHHHHHHhC-CCeEEEEec---------C--CC-------HHHHHhcccccc
Q 015591 360 GLD--------ARAAAIIMRAVKNVVDT-GRTIVCTIH---------Q--PS-------IDIFEAFDEVKQ 403 (404)
Q Consensus 360 gLD--------~~~~~~i~~~l~~l~~~-g~tii~~tH---------~--~~-------~~i~~~fd~~l~ 403 (404)
..+ ......+.+.|++++++ |.+||+++| + |. ..+.+.+|.++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~ 395 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAF 395 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEE
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEE
Confidence 774 23446778888888754 999999999 2 42 146777888774
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-13 Score=131.44 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=84.2
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCC-CCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTD-IHSPQ 278 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~-~~~~~ 278 (404)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.+... ...++.+++++|.. ...+.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 346899999999999 99999999999999999999654 3889998865321 11223455666653 24556
Q ss_pred CCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 015591 279 ITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP 357 (404)
.++.|++......+... .....+..+.+.+++. .|||||+||+.|++++..+|++ ||++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 67777774322111100 0001111222222221 4889999999999999999987 6766
Q ss_pred C
Q 015591 358 T 358 (404)
Q Consensus 358 t 358 (404)
.
T Consensus 195 l 195 (278)
T 1iy2_A 195 L 195 (278)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-13 Score=128.08 Aligned_cols=143 Identities=19% Similarity=0.214 Sum_probs=90.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCC-CCCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTD-IHSPQ 278 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~-~~~~~ 278 (404)
...+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ...++.+++++|.. ...+.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 345899999999999 99999999999999999999654 3788888865321 11223355666653 24556
Q ss_pred CCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 015591 279 ITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 357 (404)
Q Consensus 279 ~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEP 357 (404)
.++.|++......+... .....+..+.+.+++. .|||||+||+.|++++..+|++ +|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 67777774322111100 0011112222333322 3788999999999999999987 6776
Q ss_pred CC------------CCCHHHHHHHHH
Q 015591 358 TT------------GLDARAAAIIMR 371 (404)
Q Consensus 358 ts------------gLD~~~~~~i~~ 371 (404)
.- -.|...+..|++
T Consensus 171 l~r~~rf~~~i~i~~p~~~~r~~il~ 196 (254)
T 1ixz_A 171 LLRPGRFDRQIAIDAPDVKGREQILR 196 (254)
T ss_dssp GGSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred HcCCCcCCeEEeeCCcCHHHHHHHHH
Confidence 53 235666666554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-11 Score=129.28 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=99.8
Q ss_pred CceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCC-------
Q 015591 202 KKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDI------- 274 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~------- 274 (404)
+...+++++++.+++|+.++|+||||+|||||+++|++...+. .-|.+.+++.+.. .....++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~--~~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPED--ENMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTC--TTSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCccc--ccCCcEEEEecchHHHHHHHH
Confidence 4566899999999999999999999999999999999977653 2388888887643 23455778776320
Q ss_pred ---------------CCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHH
Q 015591 275 ---------------HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRL 339 (404)
Q Consensus 275 ---------------~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl 339 (404)
.+..+++.+|+.............. .......++. +..+..... ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~~L~---G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAGALL---GDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHHHHH---CEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHHhcC---ceEEechhh-----cCCccccccccc
Confidence 1111122222211000000000000 0000011222 211111111 125999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 015591 340 TIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375 (404)
Q Consensus 340 ~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~ 375 (404)
..++....++.+|||||... |++..+..+.+.|++
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899998888888875
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-11 Score=127.71 Aligned_cols=166 Identities=10% Similarity=0.125 Sum_probs=93.9
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCC--CCCHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSP--QITVEES 284 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g--~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~--~~Tv~e~ 284 (404)
.+++.+.++..+.|.|++||||||+++.|.. +....+ |++.+.+.+.....+.. | ..-+++.. -....+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p--~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP--EDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT--TTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC--ceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence 4678888899999999999999999999875 333322 55554443322111111 0 00011100 0122222
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccc--cccCCCCCCCCHHHHHHH----------HHHHHHhcCCC-E
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS--LVGIPGVNGLSTEQRKRL----------TIAVELVANPS-I 351 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~vg~~~~~~LSgGqrqRl----------~IAraL~~~p~-i 351 (404)
...-.++ ..+..++ .+.+...++.++.+. .+. ..+|+||+||. .+|+++...|. +
T Consensus 233 ~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 233 ANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 2111111 1122233 366777777665332 111 13678877652 35666778898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh----CCCeEEEEecCCCHH
Q 015591 352 IFMDEPTTGLDARAAAIIMRAVKNVVD----TGRTIVCTIHQPSID 393 (404)
Q Consensus 352 LlLDEPtsgLD~~~~~~i~~~l~~l~~----~g~tii~~tH~~~~~ 393 (404)
+++||+++-+|.. ...+.+.|.++++ .|.++|++||+|+.+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~d 345 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVD 345 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTT
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccc
Confidence 8999999988843 3455566655543 377999999999843
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-10 Score=118.59 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=46.1
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
..+|+|+||++++ ++++|+||||||||||+++|+|+.+|. +|+|.++|.++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD--LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC--TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC--CCEEEECCEEc
Confidence 4589999999999 999999999999999999999987764 59999999764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=97.12 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 336 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 336 rqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
.+...+|++++.+|+++++| ||++|..+..++++.|.+.
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999 9999999999999888653
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-09 Score=105.99 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCeEEEEecCCC
Q 015591 337 KRLTIAVELVAN--PSIIFMDEPTTGL----------DA---RAAAIIMRAVKNV----VDTGRTIVCTIHQPS 391 (404)
Q Consensus 337 qRl~IAraL~~~--p~iLlLDEPtsgL----------D~---~~~~~i~~~l~~l----~~~g~tii~~tH~~~ 391 (404)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|.|||+++|..+
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 445678888765 9999999999988 32 2222344455554 345999999999653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-09 Score=103.36 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=76.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA 294 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~ 294 (404)
++|++++++|+||+||||++..|++...+. +| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999865431 24 23455555331 234555554321
Q ss_pred ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 015591 295 PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374 (404)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~ 374 (404)
+..++.... ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 112222110 1222 33345555 45999999999 89999876655544433
Q ss_pred HHHh--C-CCeEEE-EecCCCHHHHHhcccc
Q 015591 375 NVVD--T-GRTIVC-TIHQPSIDIFEAFDEV 401 (404)
Q Consensus 375 ~l~~--~-g~tii~-~tH~~~~~i~~~fd~~ 401 (404)
-+.. . +.++++ ++|... ++.+.+|++
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~ 236 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRF 236 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTT
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHH
Confidence 3321 2 233444 378754 566666653
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.6e-11 Score=106.27 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=45.8
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHHHHH
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVEESV 285 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l 285 (404)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ...+..++|++|+...++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56778999999999999999999999999753 34555543211 12245678999876555555555444
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-12 Score=125.51 Aligned_cols=143 Identities=12% Similarity=0.101 Sum_probs=78.8
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCC-CCCCCHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIH-SPQITVE 282 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~-~~~~Tv~ 282 (404)
..+++++++.+++|++++|+||||||||||+++|+|.. .|.+..-..+. ..+...+++++|...+ +...+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 45899999999999999999999999999999999843 37766522111 1112235566664321 1121111
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHH---cCCCC-Cc---ccc-----ccCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLET---IELDG-IK---DSL-----VGIPGVNGLSTEQRKRLTIAVELVANPS 350 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~---l~l~~-~~---~~~-----vg~~~~~~LSgGqrqRl~IAraL~~~p~ 350 (404)
.++ .+.............+...++- +.+.. .. +.+ +.. ....+++|++||+..+++++.+|+
T Consensus 229 ~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~-~~~~l~~~~~~rl~~~~~l~~~pD 302 (377)
T 1svm_A 229 GGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTM-NEYSVPKTLQARFVKQIDFRPKDY 302 (377)
T ss_dssp TTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEE-CSCCCCHHHHTTEEEEEECCCCHH
T ss_pred HHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccCh-hHHhhcHHHHHHHhhhhccCCCCC
Confidence 100 0000000000001222333320 00110 00 000 000 123589999999999888888999
Q ss_pred EEE-EeCCCC
Q 015591 351 IIF-MDEPTT 359 (404)
Q Consensus 351 iLl-LDEPts 359 (404)
+++ ||+|+.
T Consensus 303 LliyLd~~~~ 312 (377)
T 1svm_A 303 LKHCLERSEF 312 (377)
T ss_dssp HHHHHHTCTH
T ss_pred eEEEEeCCHH
Confidence 876 999876
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-09 Score=94.96 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 339 l~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
...|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999998887664
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-08 Score=103.83 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCCeEEEEecCCC
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPT----------TGLDARAAAIIMRAVKNVV----DTGRTIVCTIHQPS 391 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPt----------sgLD~~~~~~i~~~l~~l~----~~g~tii~~tH~~~ 391 (404)
+++++|-.+++|....|.+||+||+. +|.|......+.+++..+- ..+..||.+||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 67788889999999999999999993 4677776666667766653 24678999999985
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.8e-10 Score=102.62 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=40.0
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-----------hhhcceeEEeecC
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-----------ETFARVSGYCEQT 272 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----------~~~~~~~g~v~Q~ 272 (404)
++++.+ ++++|+||||||||||+++|+|...+. +|+|.++|.+... ...++.++|++|.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD--LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC--TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC--CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 899999999999999999999987764 5999999876511 1134568999974
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.6e-09 Score=102.16 Aligned_cols=49 Identities=22% Similarity=0.197 Sum_probs=34.8
Q ss_pred eeeeee--eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeE-EEECCcc
Q 015591 206 LLYDVT--GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGE-IKIGGYP 256 (404)
Q Consensus 206 iL~~vs--~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~-I~i~G~~ 256 (404)
-|+.+- +-+++|+++.|.||+|||||||+..+++..... .|. +++++..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEeccc
Confidence 344443 368999999999999999999999998753221 143 3555543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-09 Score=97.12 Aligned_cols=72 Identities=19% Similarity=0.094 Sum_probs=47.8
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh--hhcceeEEeecCCCCCCCCCHHHHHHHH
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE--TFARVSGYCEQTDIHSPQITVEESVIFS 288 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~--~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~ 288 (404)
.+..++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...++++|+....+.+++.+++...
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 3556789999999999999999999999853 7888888764321 1122457777765444455666666543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=93.86 Aligned_cols=150 Identities=16% Similarity=0.217 Sum_probs=83.5
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHhCCCCC---------CceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHH--
Q 015591 216 PGVL-TALMGVSGAGKTTLLDVLAGRKTT---------GSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEE-- 283 (404)
Q Consensus 216 ~Ge~-~alvG~sGaGKSTLl~~L~g~~~~---------~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e-- 283 (404)
+|-. ++|+|++|||||||+|.|+|.... ++..|.|.++|.++. +....|++.+. +...+..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~l----p~~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGI----PPQIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSC----CGGGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcC----CHHHHHHHH
Confidence 3444 999999999999999999996431 134688999885431 12234554432 1112211
Q ss_pred -HHHHHh--h-hhcCccCCh-----hhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHH----HHH-hcCC
Q 015591 284 -SVIFSA--W-LRLAPEINS-----KTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIA----VEL-VANP 349 (404)
Q Consensus 284 -~l~~~~--~-~~~~~~~~~-----~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IA----raL-~~~p 349 (404)
.+.... . +-..-..+. .+..+.+.++++.+++.+..--.+... ...+|++++||+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 111100 0 000001111 122234566777776654331111111 123687888888877 555 4444
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 015591 350 SIIFMDEPTTGLDARAAAIIMRAVKNVV 377 (404)
Q Consensus 350 ~iLlLDEPtsgLD~~~~~~i~~~l~~l~ 377 (404)
++ +|+|++|......+.+.|.++.
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHh
Confidence 54 7999999999999999988765
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-07 Score=103.30 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEE-ecCCCHHHHHhccc
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTT-GLDARAAAIIMRAVKNVVDTGRTIVCT-IHQPSIDIFEAFDE 400 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~-tH~~~~~i~~~fd~ 400 (404)
-+|.|+.+|..+++.++.+++++|+|||.. +||......+++.+.+.....++|+++ ||+++ ++.+.|++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~ 261 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFND 261 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTS
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcC
Confidence 379999999999999999999999999997 999887777777666554446778885 88764 56667764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-07 Score=91.89 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe--cCCC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMD-EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTI--HQPS 391 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLD-EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~t--H~~~ 391 (404)
.+|++++|++. +.+...++-++++| +|++++|......+++.+.+... +..+|++. ||..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 58999998876 55556677788999 99999999988888887776543 78888888 8874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=4.3e-08 Score=104.58 Aligned_cols=133 Identities=15% Similarity=0.099 Sum_probs=75.5
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHH
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV---QETFARVSGYCEQTDIHSPQITVEESVIF 287 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~ 287 (404)
|+.+++|..++|+|++|+|||||++.|++........|+| .+|.... ....++.+++..|...+... +++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~----- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR----- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE-----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE-----
Confidence 3567889999999999999999999999754332234776 4554321 12233444554442211100 000
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~ 367 (404)
..+.|+ ||...++ .......-..+..++++| |+.|+++.++.
T Consensus 76 ----------------------------~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 76 ----------------------------VFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ----------------------------EEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ----------------------------EEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 011222 2211222 112223335678889999 99999988763
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCH
Q 015591 368 IIMRAVKNVVDTGRTIVCTIHQPSI 392 (404)
Q Consensus 368 ~i~~~l~~l~~~g~tii~~tH~~~~ 392 (404)
. ++.+.+.+.++|++.|..+.
T Consensus 118 ~----~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 A----WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H----HHHHHHTTCCEEEEEECGGG
T ss_pred H----HHHHHHccCCEEEEecCCch
Confidence 3 33333468899999998764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-08 Score=94.79 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=35.1
Q ss_pred EEEEece-eEEeeccccccccccccCceeeeeeeeeeeeC---CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 178 TVAFQDL-KYYIDTPLEMRERGFTEKKLRLLYDVTGSLRP---GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 178 ~i~~~~l-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|+ ++.|. +..++|+|+|+++++ |++++|+|++||||||+.++|++.
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4888898 88662 235699999999999 999999999999999999999974
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-07 Score=92.54 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=81.1
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
.-|+.+..-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.- .++..+-
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHHHH
Confidence 356777778999999999999999999999888742110 11 12333321 2333221
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
.. +.......+++..+.+ | .||.++.+|+..|...+.+++++|.|+|...+|
T Consensus 90 ~~------------------Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-- 141 (338)
T 4a1f_A 90 AL------------------RALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-- 141 (338)
T ss_dssp HH------------------HHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH--
T ss_pred HH------------------HHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH--
Confidence 11 1111111111111111 1 499999999999999999999999999865433
Q ss_pred HHHHHHHHHHHHHh-C-CCeEEEEec
Q 015591 365 AAAIIMRAVKNVVD-T-GRTIVCTIH 388 (404)
Q Consensus 365 ~~~~i~~~l~~l~~-~-g~tii~~tH 388 (404)
.|...++++.+ . |..+|+|-|
T Consensus 142 ---~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 ---QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp ---HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ---HHHHHHHHHHHhcCCCCEEEEec
Confidence 55566666653 4 688888865
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-07 Score=83.96 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.1
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
+++++.+.+| +++|+||||||||||+++|.+...
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6889999999 999999999999999999998554
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-06 Score=86.07 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEec
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG-RTIVCTIH 388 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tH 388 (404)
.+..++++..+++..+.+|++++|.-..+..|... ....+.++.+...| ++++++++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445433 44566677765555 57777775
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-08 Score=90.78 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=42.2
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEE--EECCccC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI--KIGGYPK 257 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I--~i~G~~~ 257 (404)
.....+..++..++|++++|+||||||||||+++|+++.. ..|.+ +++|.++
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 3456778888889999999999999999999999999654 13666 8887543
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.2e-08 Score=92.07 Aligned_cols=76 Identities=20% Similarity=0.066 Sum_probs=52.0
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh---CCCCCCceeeEEE--------ECCccCc----hhhhcceeEEee
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA---GRKTTGSMEGEIK--------IGGYPKV----QETFARVSGYCE 270 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~---g~~~~~~~~G~I~--------i~G~~~~----~~~~~~~~g~v~ 270 (404)
++++.+ ++|++++|+|||||||||++++|+ |+..+ .+|.+. .+|.+.. ...+++.+++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 444544 789999999999999999999999 87665 469988 8887652 134566788888
Q ss_pred cCC-----CCCCCCCHHHHHH
Q 015591 271 QTD-----IHSPQITVEESVI 286 (404)
Q Consensus 271 Q~~-----~~~~~~Tv~e~l~ 286 (404)
|.+ ..++..++.+++.
T Consensus 94 ~~~~~~~~~~l~~~~v~~~i~ 114 (252)
T 4e22_A 94 VSQNGQLQVILEGEDVSNEIR 114 (252)
T ss_dssp EEETTEEEEEETTEECTTGGG
T ss_pred ecCCCCceEEECCeehhHHHH
Confidence 643 2234445555543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-09 Score=112.81 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=76.5
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchh---hhcceeEEeecCCC-CCCCC
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQE---TFARVSGYCEQTDI-HSPQI 279 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~~~~~~g~v~Q~~~-~~~~~ 279 (404)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+..++|... ..+..
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 34788999999999 99999999999999999999654 37888888653211 11223344555432 23444
Q ss_pred CHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 015591 280 TVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 358 (404)
Q Consensus 280 Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPt 358 (404)
.+.|++......+... .....+..+.+.+++. .||||++|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 5555553221111100 0011222233344443 2566666666677777777766 67765
Q ss_pred C
Q 015591 359 T 359 (404)
Q Consensus 359 s 359 (404)
-
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.9e-07 Score=82.77 Aligned_cols=39 Identities=28% Similarity=0.084 Sum_probs=24.4
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
...+++||||.+++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999999999999999999743
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-07 Score=91.80 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=57.4
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-------hhh-----cceeEEe-ecCC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-------ETF-----ARVSGYC-EQTD 273 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~-----~~~~g~v-~Q~~ 273 (404)
+++++|.+++|++++++|+||+||||++..|++...+. .|+|.+.+.+... ..+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 47899999999999999999999999999999965532 4888887766421 122 4457888 6654
Q ss_pred CCCCCCCHHHHHHHH
Q 015591 274 IHSPQITVEESVIFS 288 (404)
Q Consensus 274 ~~~~~~Tv~e~l~~~ 288 (404)
...|..++++++...
T Consensus 173 ~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 173 NADPASVVFDAIKKA 187 (320)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444566666543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.5e-07 Score=81.26 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=27.0
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT 243 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~ 243 (404)
+++++|++++|+||||||||||+++|+++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 35789999999999999999999999998744
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-06 Score=83.22 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=35.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEEecCCC
Q 015591 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD---TGRTIVCTIHQPS 391 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~---~g~tii~~tH~~~ 391 (404)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888776654 5788999999874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.3e-06 Score=77.13 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCeEEEEecCC---CHHH
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDAR----------AAAIIMRAVKNVVD----TGRTIVCTIHQP---SIDI 394 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tii~~tH~~---~~~i 394 (404)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|+++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 457777778888888899999999998766532 22234444443321 234677888875 4556
Q ss_pred HHhccccc
Q 015591 395 FEAFDEVK 402 (404)
Q Consensus 395 ~~~fd~~l 402 (404)
...|++.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 66777554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-07 Score=84.42 Aligned_cols=69 Identities=6% Similarity=-0.016 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHH-HHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSID-IFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~-i~~~fd~~l~ 403 (404)
.+.|+.+|..+++....+|+.+..+ ++.++|.....+.+.++.. .+.++|+.+|.+... +...||.++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~ 129 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILV 129 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEE
Confidence 3678888999998888887654332 3355666655555544432 356888888876422 3556776653
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.5e-07 Score=84.40 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=36.3
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
+-+...++|++++|.|+||||||||+++|+|. .|+|.+.+.+.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 34556689999999999999999999999986 27888888763
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=7.7e-07 Score=78.83 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=29.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEE
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKI 252 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i 252 (404)
.+|++++|+||||||||||+++|++..++ ...|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 36899999999999999999999997542 13455544
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-06 Score=82.95 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=78.3
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
.-|+++..-+++|+++.|.|++|+|||||+..++...-. .| ..+.|+.- .++..+-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g---------------~~vl~~sl------E~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND---------------DVVNLHSL------EMGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TT---------------CEEEEEES------SSCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cC---------------CeEEEEEC------CCCHHHH
Confidence 467788878999999999999999999999888742100 01 12334332 1233221
Q ss_pred HHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 015591 285 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 364 (404)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~ 364 (404)
.. +.......+++.++.+ | ...||.++++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 11 0111111111111110 0 002888999999999998888899999988643
Q ss_pred HHHHHHHHHHHHHhC-CCe--EEEEec
Q 015591 365 AAAIIMRAVKNVVDT-GRT--IVCTIH 388 (404)
Q Consensus 365 ~~~~i~~~l~~l~~~-g~t--ii~~tH 388 (404)
...+...++++.++ |.. +|++-|
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 23455566666543 666 787765
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.07 E-value=4.9e-06 Score=80.03 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--eEEEEecCCCHHHHHhccccc
Q 015591 331 LSTEQRKRLTIAVELV--ANPSIIFMDEPTTGLDARA-AAIIMRAVKNVVDT-GR--TIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 331 LSgGqrqRl~IAraL~--~~p~iLlLDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tii~~tH~~~~~i~~~fd~~l 402 (404)
+|.|++ .+++.+. ..|.++++ +.+|... +..+.+.++++.+. |. .+.+++|+-. .+-+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 888886 4566666 67888888 7889876 66777888888754 53 5666777654 4666666543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-06 Score=77.49 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=26.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTT 243 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~ 243 (404)
++|++++|+||||||||||++.|++..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999997654
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.4e-06 Score=85.50 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=37.8
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 347 ANPSIIFMDEPTTGLDA-RAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~-~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+|++|++||+..-.+. .++..+...+..+.+.|+.||+++|++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 38999999999887664 6777888999888777999999999854
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.4e-07 Score=89.07 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=35.6
Q ss_pred CceeeeeeeeeeeeCCc------EEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 202 KKLRLLYDVTGSLRPGV------LTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge------~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
+..+.|++++..+.+++ ++||+||||||||||+++|+++..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44668888888888877 999999999999999999998654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.5e-05 Score=76.45 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=28.4
Q ss_pred eeeee-eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 207 LYDVT-GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 207 L~~vs-~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 5799999999999999999999998886
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.9e-06 Score=76.80 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=25.8
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999999998653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.3e-06 Score=74.83 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=31.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.+|++++|+|+|||||||++++|++.. |.+.+++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 569999999999999999999999752 6677877553
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.9e-05 Score=79.81 Aligned_cols=27 Identities=37% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
++.+++++|++|+||||++..|++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999997543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.1e-05 Score=77.21 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=26.5
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+.++++..+.|.||+|+|||||++.|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346789999999999999999999999754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.6e-06 Score=80.72 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998743
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.88 E-value=2.1e-06 Score=77.39 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=33.5
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++|++++|+|+||||||||++.|++...+. .|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~--~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ--GISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCeEEEeccC
Confidence 35789999999999999999999999865432 3777766544
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.4e-05 Score=74.84 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=28.5
Q ss_pred eeeeee-eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVT-GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs-~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.|+.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 344443 5789999999999999999999988875
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.82 E-value=2.9e-05 Score=78.17 Aligned_cols=46 Identities=22% Similarity=0.015 Sum_probs=37.6
Q ss_pred eeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 208 YDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 208 ~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
+++++. +|++++++|+|||||||++..|++..... .|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence 578887 89999999999999999999999976542 37787766553
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.78 E-value=7.7e-06 Score=71.12 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.|++++|+|+||||||||+++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999999998643
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.76 E-value=5e-06 Score=86.56 Aligned_cols=42 Identities=36% Similarity=0.439 Sum_probs=35.3
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee-EE-EECCcc
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG-EI-KIGGYP 256 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G-~I-~i~G~~ 256 (404)
.+++|++++|+|+||||||||+++|+|+..+. +| ++ +++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcH
Confidence 57899999999999999999999999976553 34 67 488865
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.4e-05 Score=68.84 Aligned_cols=29 Identities=31% Similarity=0.698 Sum_probs=23.9
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555665 99999999999999999986
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=1.4e-05 Score=71.89 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=28.1
Q ss_pred eeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 210 vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+--.+++|++++|+|++|||||||++.|++.+
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34467889999999999999999999999865
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.74 E-value=5.6e-06 Score=82.04 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=43.9
Q ss_pred EEEEeceeEEeeccccccccccccCceeeee--------------eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLY--------------DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+.|+||++.|+. ++..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4788888887753 345777 89999999999999999999999999999874
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=66.97 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccc
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTT-GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDE 400 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~ 400 (404)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+....-+++++++--+...+.+.|+.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456555543 33578999999999976 68777665555554443333456666654444445556654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.63 E-value=4.9e-05 Score=67.82 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+.|.||+|+|||||++.|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999863
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.59 E-value=6.4e-06 Score=80.63 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=35.3
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+.+++++++.+++|.+++|+|++|+|||||++.|++..
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999999999998753
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.59 E-value=7.7e-05 Score=75.50 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=81.9
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhh-cceeEEeecCCCCCCCCCHHH
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF-ARVSGYCEQTDIHSPQITVEE 283 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~-~~~~g~v~Q~~~~~~~~Tv~e 283 (404)
.-|+.+..-+++|+++.|.|++|+|||||+..++...........+++.... +...+ +|..+....-+. ..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~--~~----- 259 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM-PAAQLTLRMMCSEARIDM--NR----- 259 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS-CHHHHHHHHHHHHTTCCT--TT-----
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHHHcCCCH--HH-----
Confidence 3577777779999999999999999999998887532110000122222211 11111 111000000000 00
Q ss_pred HHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCC
Q 015591 284 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTTGL 361 (404)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~--~~p~iLlLDEPtsgL 361 (404)
++. ......+ ...+.+.++.+.-.++ .+-.. .++|..+- .+.++.+. .+|+++++|..+.-.
T Consensus 260 -------l~~-g~l~~~~-~~~~~~a~~~l~~~~l---~i~d~--~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 260 -------VRL-GQLTDRD-FSRLVDVASRLSEAPI---YIDDT--PDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp -------CCG-GGCCHHH-HHHHHHHHHHHHTSCE---EEECC--TTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCB
T ss_pred -------HhC-CCCCHHH-HHHHHHHHHHHhcCCE---EEECC--CCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcC
Confidence 000 0111111 1222333333221111 11111 24777664 34556555 479999999987644
Q ss_pred CH----------HHHHHHHHHHHHHHhC-CCeEEEEec
Q 015591 362 DA----------RAAAIIMRAVKNVVDT-GRTIVCTIH 388 (404)
Q Consensus 362 D~----------~~~~~i~~~l~~l~~~-g~tii~~tH 388 (404)
+. .....+.+.|+.++++ +.+||+++|
T Consensus 324 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 324 GPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 32 1234677788888764 899999988
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00014 Score=68.28 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.6
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.++.-+.|.||+|+|||||++.++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 456677999999999999999999874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.47 E-value=5.4e-05 Score=69.78 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=30.4
Q ss_pred eeeeeeeee---CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 207 LYDVTGSLR---PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 207 L~~vs~~i~---~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
|.++|+++. +|.+++|.|++||||||+++.|+..+.. .+.+.....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~---~~~~~~~~~ 61 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK---DYDVIMTRE 61 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT---TSCEEEECT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc---CCCceeecC
Confidence 556666665 8999999999999999999999986543 145544333
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00013 Score=63.44 Aligned_cols=27 Identities=41% Similarity=0.701 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999853
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=6.3e-05 Score=67.96 Aligned_cols=29 Identities=31% Similarity=0.698 Sum_probs=23.7
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344556665 99999999999999999875
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00037 Score=66.98 Aligned_cols=45 Identities=7% Similarity=0.123 Sum_probs=34.3
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 346 VANPSIIFMDEPTT-GLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 346 ~~~p~iLlLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
..+|++|++||+-. .-+...+..+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35699999999865 2344677888888888777788888888754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00011 Score=74.12 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=38.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC----------CCceeeEEEECCccC---chhhhcceeEEeecCCCCCCCCCHHHH
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKT----------TGSMEGEIKIGGYPK---VQETFARVSGYCEQTDIHSPQITVEES 284 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~----------~~~~~G~I~i~G~~~---~~~~~~~~~g~v~Q~~~~~~~~Tv~e~ 284 (404)
-.++|+|+||+|||||+|.|+|... .++..|.+.++|.+. +....++..++.+|....+...+..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3699999999999999999999642 113458999998752 112223333344343333344445555
Q ss_pred HHH
Q 015591 285 VIF 287 (404)
Q Consensus 285 l~~ 287 (404)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.42 E-value=1.1e-05 Score=83.83 Aligned_cols=50 Identities=30% Similarity=0.379 Sum_probs=40.7
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
...+++++++.+ +|+.++|+||||+|||||+++|++...+ ..|.|.++|.
T Consensus 95 ~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~--~~~~i~~~~~ 144 (543)
T 3m6a_A 95 EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR--KFVRISLGGV 144 (543)
T ss_dssp HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC--EEEEECCCC-
T ss_pred HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC--CeEEEEeccc
Confidence 345778888888 8999999999999999999999996543 3578877764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=6e-05 Score=68.37 Aligned_cols=56 Identities=21% Similarity=0.086 Sum_probs=38.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC-CCceeeEEEE--------CCccCch----hhhcceeEEeecC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKT-TGSMEGEIKI--------GGYPKVQ----ETFARVSGYCEQT 272 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~-~~~~~G~I~i--------~G~~~~~----~~~~~~~g~v~Q~ 272 (404)
+.+++|+|+|||||||+.++|++.+. +....|++.. +|.++.. ..+++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 56899999999999999999997531 1123477765 5654321 2345567777774
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00087 Score=61.41 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999644
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=7.2e-05 Score=65.54 Aligned_cols=38 Identities=34% Similarity=0.375 Sum_probs=29.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee--EEEECCc
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG--EIKIGGY 255 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G--~I~i~G~ 255 (404)
++|++++|+|++||||||+.+.|++.+.+ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECCh
Confidence 47999999999999999999999985432 14 5666654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00015 Score=63.98 Aligned_cols=50 Identities=30% Similarity=0.389 Sum_probs=28.7
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC------CCCceeeEEEECCc
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK------TTGSMEGEIKIGGY 255 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~------~~~~~~G~I~i~G~ 255 (404)
.+++++++..++. .++++|++|+|||||++.+.+.. +.+...+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4789999998888 57999999999999999998731 22334577777764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=8.9e-05 Score=65.49 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=26.3
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999864
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00084 Score=65.74 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++..-+.|.||+|+|||||++.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999999864
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0001 Score=66.72 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=30.5
Q ss_pred cCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCe-EEEEecCC
Q 015591 347 ANPSIIFMDEPTTGL-DARAAAIIMRAVKNVVDTGRT-IVCTIHQP 390 (404)
Q Consensus 347 ~~p~iLlLDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-ii~~tH~~ 390 (404)
.+|.+|++||.-.-- +......+.+.+....+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999975432 233367788888887666665 78877744
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=5.8e-05 Score=67.28 Aligned_cols=51 Identities=29% Similarity=0.393 Sum_probs=38.9
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC------CCCceeeEEEECCc
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK------TTGSMEGEIKIGGY 255 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~------~~~~~~G~I~i~G~ 255 (404)
..+++++|+..++++ ++|+|++|+|||||++.+.+.. +.+...+.+.++|.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 358899999988885 7899999999999999998732 12223467777763
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.33 E-value=8.8e-05 Score=66.61 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=25.3
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999998754
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=4.9e-05 Score=74.59 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=28.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
+++.+++|+|++|||||||+|.|+|...+. .|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~--~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER--GHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc--CCeEEEEe
Confidence 457899999999999999999999854322 24454443
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00025 Score=67.33 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
|...+.|.||+|+|||||.+.|++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHH
Confidence 34689999999999999999999854
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=1.7e-05 Score=78.30 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=32.8
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+.+.+++..+ +++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~-------------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQV-------------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHH-------------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHh-------------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 46667766543 2455788888877 999999999999999998753
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00068 Score=66.66 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=28.0
Q ss_pred eeeeee--eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVT--GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs--~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-|+.+- .-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455543 3589999999999999999999988774
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=5.1e-05 Score=68.56 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=33.6
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceee--EEEECCc
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEG--EIKIGGY 255 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G--~I~i~G~ 255 (404)
..+++|.+++|+|++||||||+.+.|++.+.+ ..| .+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~--~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVR--DRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHH--HHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--ccCCcEEEECCh
Confidence 44678999999999999999999999986542 236 7777753
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00046 Score=67.09 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00016 Score=64.54 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00051 Score=58.91 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00044 Score=63.52 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=39.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec---------CCCHHHHHhcccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH---------QPSIDIFEAFDEVKQ 403 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH---------~~~~~i~~~fd~~l~ 403 (404)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| ..+.++.+++|+|..
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~e 148 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITK 148 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEE
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEee
Confidence 489999999964 6543 45566676667999999999 667788999998753
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=60.64 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++..-+.|.||+|+|||||++.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456889999999999999999863
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0047 Score=59.54 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.8
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
..+..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566779999999999999999999743
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=7.1e-05 Score=73.48 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=33.2
Q ss_pred eeeeeeeeeeeCCcE--EEEEcCCCCcHHHHHHHHhCC
Q 015591 205 RLLYDVTGSLRPGVL--TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~--~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 478899999999999 999999999999999999984
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00028 Score=69.55 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=26.8
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
+++..+++.+| +++|+|+|||||||++..|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45677777776 99999999999999999875
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.06 E-value=8e-05 Score=72.32 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.4
Q ss_pred CceeeeeeeeeeeeCCcE--EEEEcCCCCcHHHHHHHHhCCC
Q 015591 202 KKLRLLYDVTGSLRPGVL--TALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 202 ~~~~iL~~vs~~i~~Ge~--~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+...+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345688899999999998 9999999999999999999854
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0003 Score=61.91 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=25.9
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
...+|.++.|+|++||||||+.+.|++...
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999997543
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00066 Score=59.03 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00015 Score=67.58 Aligned_cols=46 Identities=28% Similarity=0.258 Sum_probs=34.6
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
++++.+ ..+++.++.|+|++||||||+.+.|+..... +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecHH
Confidence 344444 5677899999999999999999999975432 456777643
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00033 Score=61.31 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00028 Score=63.00 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00041 Score=61.25 Aligned_cols=38 Identities=39% Similarity=0.338 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-CCceeeEEEECCc
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKT-TGSMEGEIKIGGY 255 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~-~~~~~G~I~i~G~ 255 (404)
.+++|+|+||||||||++.|.+... .+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5899999999999999999987532 1222377777654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00048 Score=59.79 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00051 Score=59.03 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00014 Score=69.83 Aligned_cols=46 Identities=26% Similarity=0.161 Sum_probs=36.1
Q ss_pred ee-eeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 208 YD-VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 208 ~~-vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
++ +++..+ |++++++|++|+||||++..|++..... .++|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecC
Confidence 46 788876 9999999999999999999999865432 3667665544
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00052 Score=62.97 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.7
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-.+|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999996
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00071 Score=67.39 Aligned_cols=44 Identities=20% Similarity=0.448 Sum_probs=32.4
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC---------CCCceeeEEEECC
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLAGRK---------TTGSMEGEIKIGG 254 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~---------~~~~~~G~I~i~G 254 (404)
-..+..|..++|+|+||+|||||++.|+|.. +..+..|.+.+.+
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3456778899999999999999999999961 1123457777665
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00044 Score=64.06 Aligned_cols=45 Identities=27% Similarity=0.444 Sum_probs=29.8
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
.++++++..++| +.|.||+|+|||||++.|++.... --+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~----~~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV----PFFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC----CEEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC----CEEEEeHHH
Confidence 355566666666 889999999999999999985432 136666654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00071 Score=59.37 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+++.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999985
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00074 Score=59.01 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
|.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999863
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00069 Score=59.21 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999985
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00077 Score=62.35 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.-+++|.||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999994
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=58.12 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999853
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00077 Score=58.80 Aligned_cols=25 Identities=40% Similarity=0.294 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.++..+.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999984
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=59.69 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=56.68 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 015591 219 LTALMGVSGAGKTTLLDVL 237 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L 237 (404)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0013 Score=58.32 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999754
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0061 Score=60.04 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=24.9
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+-+++|+++.|.|++|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999977763
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0011 Score=61.66 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+++|+||||||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 36899999999999999999974
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=58.26 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999973
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0056 Score=59.82 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++..-+.|.||+|+|||||.+.++..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 45556889999999999999999963
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=58.91 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.+.|+||||||||||++.|..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998864
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.014 Score=57.42 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++.-+.|.||+|+|||||.+.|+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999864
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=58.14 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999998643
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0014 Score=58.35 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++|.+++|.|++||||||+.+.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0044 Score=62.60 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=30.0
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.-|+.+..-+++|+++.|.|++|+|||||+.-++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 35677776799999999999999999999877764
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=57.49 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.++.+++|+|++||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999985
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=57.57 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999964
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.44 E-value=0.009 Score=57.34 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+..-+.|.||+|+|||||.+.++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999863
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=58.01 Aligned_cols=25 Identities=44% Similarity=0.525 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++|.+++|.|++||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999999985
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00078 Score=60.21 Aligned_cols=23 Identities=52% Similarity=0.765 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.019 Score=58.63 Aligned_cols=35 Identities=23% Similarity=0.093 Sum_probs=29.2
Q ss_pred eeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 205 RLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 205 ~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+-|+.+..-+++|+++.|.|++|+|||||+.-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34666666699999999999999999999877663
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0094 Score=50.11 Aligned_cols=41 Identities=2% Similarity=0.071 Sum_probs=29.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
..+|++||.- .|+...+..+.+.+.+..+.+..+|++|+.+
T Consensus 76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 4678999964 6788888888888876533456677777654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=56.10 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0016 Score=56.57 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00075 Score=59.52 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.7
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999999999853
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0016 Score=61.99 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=27.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
..|.++.|.|||||||||+.+.|+..... |.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~----~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG----NVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT----CCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEec
Confidence 45789999999999999999999864321 4566664
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0038 Score=63.14 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeC-CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDE-PTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDE-PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.|++....+...+.+++++|+.. .+.++.... ..+.+.++ +.++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 36666677777888888754443 445666554 34455443 35788888877554
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=56.07 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999975
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=56.13 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0052 Score=62.90 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++..-+.|.||+|+|||+|.+.|+..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 455667999999999999999999864
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.01 Score=68.79 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=25.4
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-+++|+++.|.||+|+|||||+..++.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~ 754 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIA 754 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHH
Confidence 599999999999999999999998875
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.002 Score=60.30 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccc
Q 015591 357 PTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 357 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~ 401 (404)
|||+++......+.+.+.++.+. ..+..+..|..+ ++.+.++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDE-DIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCH-HHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCH-HHHHHHHHH
Confidence 99999999999999988887654 444455566543 566655554
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0027 Score=57.25 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|..+.|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999853
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=55.61 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+++|+|++|||||||+..|++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999998874
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0019 Score=63.88 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=38.0
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 348 NPSIIFMDEPTTGLD---ARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.|.++++||.=.-++ +.....+.+.+++.++.|..++++||.|+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 578999999988884 66777888888888878999999999997
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0047 Score=59.51 Aligned_cols=37 Identities=30% Similarity=0.244 Sum_probs=31.9
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
....+++..+.+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 356788888887 7999999999999999999988863
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0021 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999853
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0031 Score=57.21 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.++.+++|.|++||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999985
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0034 Score=55.63 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0031 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999999843
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0038 Score=55.37 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+.+++|+|+.||||||+.+.|+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.003 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999753
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0038 Score=53.18 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999984
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0038 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999873
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0033 Score=56.76 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+..+.|+|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999985
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.005 Score=60.56 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC---------CCCceeeEEEECC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK---------TTGSMEGEIKIGG 254 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~---------~~~~~~G~I~i~G 254 (404)
|..++|+|.+|+|||||++.|++.. +.++..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3468999999999999999999832 2223457776655
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0041 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
++++|.|+.||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999985
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0033 Score=53.09 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0042 Score=54.23 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0044 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+++|.|++||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0041 Score=55.67 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0037 Score=54.32 Aligned_cols=22 Identities=50% Similarity=0.659 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.004 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0036 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
.+++|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0043 Score=52.60 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999864
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0034 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0046 Score=53.83 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0037 Score=54.51 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
.+++|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0042 Score=54.18 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0046 Score=58.30 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999995
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0049 Score=57.40 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999853
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0038 Score=52.46 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|+.|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999864
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0049 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0038 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0077 Score=58.60 Aligned_cols=26 Identities=38% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
++.++.|+||+|||||||...|+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46689999999999999999999754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0039 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998863
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0058 Score=52.22 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999873
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0078 Score=52.50 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999976654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0044 Score=53.72 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999853
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.015 Score=52.84 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec---------CCCHHHHHhccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIH---------QPSIDIFEAFDEVK 402 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH---------~~~~~i~~~fd~~l 402 (404)
+.+++++||.-- +|.. . ++.++++++.|..||++-+ .++.++.+++|.|-
T Consensus 101 ~~dvViIDEaQF-~~~~---~-V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vt 159 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD---I-VEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVT 159 (214)
T ss_dssp SCCEEEECCGGG-SCTT---H-HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEE
T ss_pred CCCEEEEECccc-CCHH---H-HHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEE
Confidence 578999999865 6643 2 3667777777999999999 78888999999874
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.005 Score=55.18 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.035 Score=51.01 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=40.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC---------CCHHHHHhccccc
Q 015591 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ---------PSIDIFEAFDEVK 402 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~---------~~~~i~~~fd~~l 402 (404)
.+.+++++||.---.| +.+.++.+.+.|+.||++-++ ++.++.+++|.|-
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vt 147 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVV 147 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEE
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEE
Confidence 6789999999977654 555555555679999999999 8888999999774
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0042 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++++|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0043 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0041 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0056 Score=56.45 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+++-.++|.|++||||||+.+.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0044 Score=52.30 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0044 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999863
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.005 Score=53.26 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|++|+|||||++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999984
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.097 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.+++++|++|+||||++.-|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4679999999999999999999863
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0045 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998874
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0039 Score=53.65 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0045 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0045 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0058 Score=56.50 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
-+++|.|++||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0061 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+++|+|+.||||||+.+.|+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0051 Score=57.66 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||+|.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999998874
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.019 Score=62.61 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
..+.|.||+|+|||+|.+.|+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999743
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0053 Score=51.75 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999986
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0062 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0054 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0055 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|+.|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999975
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0057 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0058 Score=51.75 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++++|++|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0057 Score=53.34 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.01 Score=53.50 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=27.3
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++..-.. ..|..+.|+||+|+|||||...|+.+
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45554444 45889999999999999999999864
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0033 Score=59.86 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=18.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999985
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0068 Score=54.63 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+|..+.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999853
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0061 Score=51.31 Aligned_cols=20 Identities=40% Similarity=0.512 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|++|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999976
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0074 Score=57.70 Aligned_cols=25 Identities=40% Similarity=0.654 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.| .++|+|.+|+|||||++.|.|.
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCC
Confidence 344 5999999999999999999985
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0068 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 37899999999999999999854
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0063 Score=53.73 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|+|++|+|||||++.+.|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999976
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0059 Score=52.05 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|+.|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999986
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0064 Score=52.06 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0071 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0076 Score=56.14 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999995
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0064 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0089 Score=51.30 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+..+.|.||+|+|||||++.++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0065 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.|.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0066 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0082 Score=51.91 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.-.++++|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999743
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0024 Score=56.98 Aligned_cols=43 Identities=9% Similarity=0.222 Sum_probs=30.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+|.+|++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7877777776666542 23567888888764
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0075 Score=55.71 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.|.|.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0085 Score=54.34 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0085 Score=57.32 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|+|||||++.|.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999995
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0099 Score=53.93 Aligned_cols=26 Identities=46% Similarity=0.615 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-+|.++++.|++||||||+++.|+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999764
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0072 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0049 Score=55.09 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.29 E-value=0.009 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.287 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0071 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0074 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0089 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999974
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0075 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999863
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.048 Score=64.21 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=28.0
Q ss_pred eeeeee--eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVT--GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs--~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-|+.+- .-+++|+++.|.||+|+|||||+..++.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 455554 3599999999999999999999887764
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.007 Score=59.65 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999974
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0095 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999874
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0079 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998843
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0078 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.008 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999874
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0075 Score=52.58 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 489999999999999999987
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.008 Score=52.27 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999874
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0096 Score=53.40 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=53.80 Aligned_cols=25 Identities=44% Similarity=0.541 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+..+.|+|+.||||||+.+.|+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999853
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0078 Score=52.16 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999874
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.008 Score=55.20 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=21.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
..+|.++.+.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998643
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0084 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0092 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999999853
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0097 Score=55.45 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.008 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0086 Score=53.52 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999863
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0087 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999985
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.01 Score=53.59 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.01 Score=56.00 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.01 Score=51.73 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999984
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.011 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.++++.|++||||||+++.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998643
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.01 Score=55.68 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|||||||++.|.|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.01 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999963
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.018 Score=51.10 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999743
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.01 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.011 Score=59.12 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-.+.+++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999985
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0087 Score=52.73 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999999974
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0096 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0093 Score=52.45 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0093 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999999986
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.011 Score=53.93 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.2
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++..++.|+||.||||+|..+.|+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 355678999999999999999999853
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0093 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3799999999999999999974
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=57.44 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+++|+||+|||||||.+.|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999743
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.011 Score=55.99 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|+.|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999964
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0099 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.013 Score=56.40 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998644
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.013 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.++.+-|++||||||+++.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998643
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0096 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.012 Score=50.55 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 488999999999999999984
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.014 Score=53.21 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
++|.++.+-|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999987543
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.014 Score=55.86 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=28.1
Q ss_pred eeeeee-eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVT-GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs-~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5789999999999999999999988774
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.01 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0099 Score=52.87 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999998875
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=52.83 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.+++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3557889999999999999999864
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=53.40 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.+++|-|+.||||||+.+.|+...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998644
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.015 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+|.++++.|++||||||+.+.|+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.013 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.011 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.074 Score=61.77 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=28.2
Q ss_pred eeeeee--eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVT--GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs--~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 466654 3589999999999999999999877764
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.011 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.+.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0099 Score=55.20 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+++.+++|.|+.||||||+.+.|+...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999998754
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.013 Score=52.34 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.018 Score=52.23 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=31.5
Q ss_pred hcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCC
Q 015591 346 VANPSIIFMDEPTT----GLDARAAAIIMRAVKNVVDT-GRTIVCTIHQP 390 (404)
Q Consensus 346 ~~~p~iLlLDEPts----gLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~ 390 (404)
-.+|+++++|--+. .-|.....+++..|++++++ |.++++++|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 45789999995432 12445556677778877754 99999999864
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0082 Score=55.11 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=28.0
Q ss_pred HHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q 015591 344 ELVANPSIIFMDEPTT-GLDARAAAIIMRAVKNVVDTGRTIVCTIH 388 (404)
Q Consensus 344 aL~~~p~iLlLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tH 388 (404)
++..+|+++++||+-. ..+........+.+..+.+.|..++.++|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3446899999999753 23322222233333444457889999998
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.012 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.011 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.0049 Score=59.25 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+++++++|| ...|++..+..+.+.+.+.. ....+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS-GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC-CCceEEEEeCchh
Confidence 567999999 67888888888888887653 3445666776654
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.015 Score=56.31 Aligned_cols=24 Identities=42% Similarity=0.385 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++.|+||+|||||||.+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999743
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.0094 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999863
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.016 Score=58.77 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=28.7
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++.+ ..+-+|+..+|+|++|+|||||++.|+..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 55555 56678999999999999999999998763
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.012 Score=52.40 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999843
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.0091 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.013 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999888763
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.013 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.65 E-value=0.013 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999873
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.15 Score=60.17 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=31.4
Q ss_pred eeeeeeee--eeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 204 LRLLYDVT--GSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 204 ~~iL~~vs--~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
.+.|+++. +.+++|+.+.|.||+|+|||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45788888 589999999999999999999998876
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.013 Score=50.86 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++++|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999976
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.0085 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.018 Score=51.84 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999873
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.037 Score=48.72 Aligned_cols=33 Identities=15% Similarity=-0.022 Sum_probs=25.6
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.++..-.. ..|.-+.|.|+||+|||||...|..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444444 4588999999999999999987764
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.021 Score=54.91 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..+++|+||+|||||||...|+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 457999999999999999999864
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.015 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.076 Score=56.99 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+.|.||+|+|||+|.+.|+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.019 Score=51.36 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-.++|+|.+|+|||||++-++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999988863
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.0065 Score=56.28 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=24.2
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+.++....+.| +.|.||+|+|||||++.|+.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHH
Confidence 33444455555 77999999999999999987
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.021 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4799999999999999999998643
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.024 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.|+||.||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999963
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.018 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|+.|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.26 E-value=0.0091 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=4.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.02 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.058 Score=54.97 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHH--Hhc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 015591 330 GLSTEQRKRLTIAVE--LVA---------------NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQ 389 (404)
Q Consensus 330 ~LSgGqrqRl~IAra--L~~---------------~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~ 389 (404)
++||||+|-.-+|++ ++. .-.+++|||+ +-+|.+.....+++++++ |.-+|+++-.
T Consensus 379 ~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~ 451 (483)
T 3euj_A 379 ALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE 451 (483)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS
T ss_pred CCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc
Confidence 699999996544443 222 1236999999 999999999999999864 7777777754
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.025 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+++|+||+|||||||...|+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 47899999999999999999864
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.021 Score=50.58 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.++++|++|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999988875
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.031 Score=49.25 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=35.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC---------HHHHHhccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS---------IDIFEAFDEVK 402 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~---------~~i~~~fd~~l 402 (404)
+++++++||.-- +|+ .+.+.|+++++.|..|+++.++.+ ..+.+.+|.+.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~ 134 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVI 134 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEE
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheE
Confidence 578999999743 543 356677777777999999998443 55777777653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.023 Score=50.78 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998863
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.022 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.284 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.028 Score=47.20 Aligned_cols=42 Identities=5% Similarity=0.045 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+..+|++||. ..|++..+..+.+.|... ..+..+|++|+.+-
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 3457899998 468888888888887432 23456777777653
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.032 Score=52.54 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++..+.|.||+|+|||||.+.++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999988863
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.033 Score=48.85 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=26.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQP 390 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~ 390 (404)
++.+|++||. ..++......+.+.+.+.. .+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 5778999985 4466666666666666532 345667777655
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.039 Score=53.35 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.6
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
|+.+-+-+++|.++.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444336789999999999999999999999874
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.044 Score=49.10 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=48.0
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 336 RKRLTIAVELV--ANPSIIFMDEPTTG--LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 336 rqRl~IAraL~--~~p~iLlLDEPtsg--LD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
++.+.-|+..+ .+.+++||||.+.. ++......+++.|.+- .....||+|.+.+..++.+..|.|
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~V 174 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTV 174 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcce
Confidence 44555666677 55789999999763 3334445677777642 257899999999999999999965
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.042 Score=51.88 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 4468999999999999999999854
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.041 Score=52.47 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998764
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.036 Score=56.86 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
+.|.++.|+|.+||||||+-+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999997543
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.048 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
|..+++=|+-||||||+++.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999998754
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.041 Score=51.07 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++...+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34557889999999999999999863
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=93.31 E-value=0.022 Score=57.36 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+++++|++|+||||+...|++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999753
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.015 Score=51.17 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++++|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988876
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.032 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999954
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.042 Score=53.64 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q 015591 330 GLSTEQRKRLTIAVEL---VA--NPSIIFMDEPT 358 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL---~~--~p~iLlLDEPt 358 (404)
.+|+||+||..|+++| +. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 77 89999999997
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.048 Score=51.58 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=21.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++-..+.|.||+|+|||+|.+.|+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33456788899999999999999963
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.051 Score=51.90 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=31.3
Q ss_pred hcCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCCHHHHHhc
Q 015591 346 VANPSIIFMDEPT-TGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPSIDIFEAF 398 (404)
Q Consensus 346 ~~~p~iLlLDEPt-sgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~~~i~~~f 398 (404)
+.++++|++||.- ..++...+..++. ++......++.+|++|+.+..++...+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 4578999999982 2344433443444 555543346788888887766666654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.039 Score=55.28 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|+|||||++.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.046 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
..+||+|+.||||||+.+.|+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.049 Score=52.59 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+|..+.|.||+|+|||||++.++...
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999999743
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.0099 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.071 Score=52.55 Aligned_cols=38 Identities=29% Similarity=0.486 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC---------CCceeeEEEECCcc
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKT---------TGSMEGEIKIGGYP 256 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~---------~~~~~G~I~i~G~~ 256 (404)
-+||+|..-+|||||+|.|+|... ..+..|.+.++|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 589999999999999999999421 12345888887753
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.051 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..-+++|+|+.|+|||||++.|++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 404 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-26 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-25 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 9e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-23 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-23 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-17 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-16 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-06 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 103 bits (259), Expect = 3e-26
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 17/198 (8%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSMEGEIKIGGYPKVQE 260
+ + L V+ S+ G +T ++G +G+GK+TL++V+ G + G + E K + E
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 261 TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINS----------KTKAEFVNEVL 310
+ QT ++TV E+++ +NS + E ++L
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E ++L + D G LS Q K + I L+ NP +I MDEP G+ A I
Sbjct: 136 EFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190
Query: 371 RAVKNVVDTGRTIVCTIH 388
V + G T + H
Sbjct: 191 NHVLELKAKGITFLIIEH 208
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 99 bits (249), Expect = 2e-25
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 16/187 (8%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L +T ++ G + G +G GKTTLL ++ E I G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE--IIYNGVPITK--VKGKI 72
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
+ + I +I+VE+ + A L K + + LE++E+ +K
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK----- 122
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVC 385
+ LS +R+ +A L+ N I +D+P +D + +++++ ++ + G I+
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 386 TIHQPSI 392
+ + S
Sbjct: 182 SREELSY 188
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (251), Expect = 3e-25
Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 198 GFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP- 256
E+ + L +V +++ G ++MG SG+GK+T+L+++ GE+ I
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE--GEVYIDNIKT 69
Query: 257 ------KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
++ + G+ Q P +T E+V + + + E L
Sbjct: 70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM---SGEERRKRAL 126
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
E +++ +++ N LS Q++R+ IA L NP II D+PT LD++ IM
Sbjct: 127 ECLKMAELEERFANHK-PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIM 185
Query: 371 RAVKNVVD-TGRTIVCTIHQPSI 392
+ +K + + G+T+V H ++
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINV 208
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 99.9 bits (249), Expect = 6e-25
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 12/191 (6%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ET 261
+ + +++ G L+G SG GKTT L ++AG + G I G
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE--GRIYFGDRDVTYLPP 75
Query: 262 FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
R Q+ P +TV E++ F ++ + + V E ++++ + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR 132
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTG 380
LS QR+R+ +A +V P ++ MDEP + LDA+ + +K +
Sbjct: 133 YPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 187
Query: 381 RTIVCTIHQPS 391
T + H
Sbjct: 188 VTTIYVTHDQV 198
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 99.6 bits (248), Expect = 9e-25
Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 10/202 (4%)
Query: 189 DTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG--RKTTGSM 246
D LE++ + + + + G + L+G +GAGKTT L +AG R G +
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 247 EGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFV 306
+ + P++TV E+++ A+ R E +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----GIKRDL 119
Query: 307 NEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 366
+ +K+ L + G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 120 EWIFS--LFPRLKERLKQLGG--TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 367 AIIMRAVKNVVDTGRTIVCTIH 388
+ + ++ + G TI+
Sbjct: 176 SEVFEVIQKINQEGTTILLVEQ 197
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 97.3 bits (242), Expect = 1e-23
Identities = 38/185 (20%), Positives = 75/185 (40%), Gaps = 17/185 (9%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L ++ ++ G + A+ G +G+GKT+LL ++ G G IK G RV
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHSG---------RV- 99
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
+C Q T++E++IF E K+ + + + ++++G
Sbjct: 100 SFCSQ-FSWIMPGTIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCT 386
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 387 IHQPS 391
+
Sbjct: 215 TSKME 219
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 96.1 bits (239), Expect = 2e-23
Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 9/197 (4%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-- 256
+ +++ L ++ + G AL+G SG+GK+T+ ++ EG I + G+
Sbjct: 23 YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDLR 80
Query: 257 -KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
+ Q +I + + + + ++
Sbjct: 81 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN--KM 138
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
D D+++G GV LS QR+R+ IA L+ + I+ +DE T+ LD + I A+
Sbjct: 139 DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 197
Query: 376 VVDTGRTIVCTIHQPSI 392
+ RT + H+ S
Sbjct: 198 LQK-NRTSLVIAHRLST 213
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.3 bits (237), Expect = 3e-23
Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 17/199 (8%)
Query: 201 EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY----- 255
+ ++ L +V+ + G + ++G SGAGK+TL+ + + G + + G
Sbjct: 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE--GSVLVDGQELTTL 72
Query: 256 -PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 314
R G Q TV +V L P+ K + E+L +
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVG 129
Query: 315 LDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374
L DS LS Q++R+ IA L +NP ++ DE T+ LD I+ +K
Sbjct: 130 LGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK 184
Query: 375 NVVD-TGRTIVCTIHQPSI 392
++ G TI+ H+ +
Sbjct: 185 DINRRLGLTILLITHEMDV 203
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 94.5 bits (235), Expect = 7e-23
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 8/195 (4%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP-- 256
+ + + +L D+ S+ G A +G+SG GK+TL++++ G+I I G+
Sbjct: 26 YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIK 83
Query: 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 316
R Q D TV+E+++ E+ K ++ + L
Sbjct: 84 DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM--NLP 141
Query: 317 GIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
D+ VG GV LS Q++RL+IA + NP I+ +DE T+ LD + +II A+ +
Sbjct: 142 QGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 200
Query: 377 VDTGRTIVCTIHQPS 391
RT + H+ S
Sbjct: 201 SK-DRTTLIVAHRLS 214
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 93.1 bits (231), Expect = 2e-22
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 12/188 (6%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQET- 261
K +L ++ + G + L+G +GAGKTT L +++ S G + + G V+E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS--GIVTVFGKNVVEEPH 71
Query: 262 -FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKD 320
++ Y + + E + F A +S E V E L
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIK 128
Query: 321 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTG 380
V S ++L IA L+ NP + +DEPT+GLD A + + +K G
Sbjct: 129 DRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 381 RTIVCTIH 388
TI+ + H
Sbjct: 184 LTILVSSH 191
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 92.2 bits (229), Expect = 6e-22
Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 24/198 (12%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP---------- 256
L V+ R G + +++G SG+GK+T L + + G I + G
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE--GAIIVNGQNINLVRDKDGQ 75
Query: 257 ------KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 310
Q +TV E+V+ + ++ +K + L
Sbjct: 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-----QVLGLSKHDARERAL 130
Query: 311 ETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIM 370
+ + GI + G LS Q++R++IA L P ++ DEPT+ LD ++
Sbjct: 131 KYLAKVGIDERAQGKY-PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 189
Query: 371 RAVKNVVDTGRTIVCTIH 388
R ++ + + G+T+V H
Sbjct: 190 RIMQQLAEEGKTMVVVTH 207
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 90.4 bits (224), Expect = 1e-21
Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 26/195 (13%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP---KVQETFA 263
L ++G +R G + L+G +GAGK+TLL +AG + +G I+ G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
Y Q V L + KT+ E +N+V + LD
Sbjct: 72 LHRAYLSQQQTPPFATPVWH--------YLTLHQHDKTRTELLNDVAGALALDDKLGRST 123
Query: 324 GIPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTTGLDARAAAIIMRAVKNV 376
LS + +R+ +A ++ ++ +DEP LD + + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 377 VDTGRTIVCTIHQPS 391
G IV + H +
Sbjct: 179 CQQGLAIVMSSHDLN 193
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 89.2 bits (221), Expect = 4e-21
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP---KVQETFA 263
L ++ S++ G + ++G SG+GK+TL ++ + + + I G+
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALADPNWLR 76
Query: 264 RVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLV 323
R G Q D ++ +++ + ++ K ++ + EL +++V
Sbjct: 77 RQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS--ELREGYNTIV 133
Query: 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTI 383
G G LS QR+R+ IA LV NP I+ DE T+ LD + +IMR + + GRT+
Sbjct: 134 GEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 191
Query: 384 VCTIHQPSI 392
+ H+ S
Sbjct: 192 IIIAHRLST 200
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 88.5 bits (219), Expect = 7e-21
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 12/192 (6%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETF 262
++ + D+ + G +G SG GK+TLL ++AG +T S ++ IG
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG--DLFIGEKRMNDTPP 69
Query: 263 ARVS-GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDS 321
A G Q+ P ++V E++ F L + + VN+V E ++L + D
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR 126
Query: 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTG 380
LS QR+R+ I LVA PS+ +DEP + LDA + + + G
Sbjct: 127 KPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 381 RTIVCTIHQPSI 392
RT++ H
Sbjct: 182 RTMIYVTHDQVE 193
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.3 bits (216), Expect = 3e-20
Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 11/198 (5%)
Query: 200 TEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP--- 256
+ +L +T +LRPG +TAL+G +G+GK+T+ +L + + + G P
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ--LLLDGKPLPQ 80
Query: 257 KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-L 315
R Q + +++E++ + L P + T A + I L
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY--GLTQKPTMEEITAAAVKSGAHSFISGL 137
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
D+ V G LS QR+ + +A L+ P ++ +D+ T+ LDA + + + +
Sbjct: 138 PQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 196
Query: 376 VVD-TGRTIVCTIHQPSI 392
+ R+++ S+
Sbjct: 197 SPERYSRSVLLITQHLSL 214
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 81.1 bits (200), Expect = 3e-18
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 10/204 (4%)
Query: 192 LEMRERGFT-EKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEI 250
L R F + ++L D++ +P + A G SG GK+T+ +L + GEI
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA--GEI 59
Query: 251 KIGGYP---KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVN 307
I G P E + G+ Q E + + + +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE--NLTYGLEGDYTDEDLWQVLDLAF 117
Query: 308 EVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367
+ ++ VG GV +S QR+RL IA + NP I+ +DE T LD+ + +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 368 IIMRAVKNVVDTGRTIVCTIHQPS 391
++ +A+ +++ GRT + H+ S
Sbjct: 177 MVQKALDSLMK-GRTTLVIAHRLS 199
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 78.1 bits (192), Expect = 3e-17
Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 18/197 (9%)
Query: 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP------ 256
++ + +++ ++ G L+G SG GKTT L ++AG + G+I IG
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR--GQIYIGDKLVADPEK 72
Query: 257 -KVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 315
R Q+ P +TV +++ F LR P + EV E + L
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR---EVAELLGL 129
Query: 316 DGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKN 375
+ + LS QR+R+ + +V P + MDEP + LDA+ + +K
Sbjct: 130 TELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
Query: 376 VV-DTGRTIVCTIHQPS 391
+ G T + H
Sbjct: 185 LQRQLGVTTIYVTHDQV 201
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 78.2 bits (192), Expect = 4e-17
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 17/200 (8%)
Query: 199 FTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY--- 255
F + K+ L +V ++ G ++G SGAGKTT + ++AG + GE+
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST--GELYFDDRLVA 70
Query: 256 ---PKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET 312
+ R G QT P +T E++ F + + + E EV +
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE---EVAKI 127
Query: 313 IELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRA 372
+++ + + LS Q++R+ +A LV +PS++ +DEP + LDAR
Sbjct: 128 LDIHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 373 VKNVV-DTGRTIVCTIHQPS 391
VK V G T++ H P+
Sbjct: 183 VKEVQSRLGVTLLVVSHDPA 202
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 74.3 bits (182), Expect = 6e-16
Identities = 36/187 (19%), Positives = 74/187 (39%), Gaps = 13/187 (6%)
Query: 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS 266
L +++ + G ++G +GAGKT L+++AG S + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL-DGKDVTDLSPEKHDI 74
Query: 267 GYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIP 326
+ Q P + V++++ F + + V + ++++ + D
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFGMRM------KKIKDPKRVLDTARDLKIEHLLDRN---- 124
Query: 327 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVC 385
LS +++R+ +A LV NP I+ +DEP + LD R + + T++
Sbjct: 125 -PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183
Query: 386 TIHQPSI 392
H +
Sbjct: 184 ITHDQTE 190
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 65.8 bits (160), Expect = 6e-13
Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 14/178 (7%)
Query: 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVS-GYCEQTDI 274
L+G +GAGK+ L+++AG GE+++ G R G+ Q
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDR--GEVRLNGADITPLPPERRGIGFVPQDYA 80
Query: 275 HSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334
P ++V ++ + E + + V E+ E + + + D LS
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPA-----RLSGG 130
Query: 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVV-DTGRTIVCTIHQPS 391
+R+R+ +A LV P ++ +DEP + +D + ++M ++ V + I+ H
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.8 bits (107), Expect = 2e-06
Identities = 20/175 (11%), Positives = 37/175 (21%), Gaps = 33/175 (18%)
Query: 221 ALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQIT 280
+ G G GKTTL+ + R + R ++T
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRA--IGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 281 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLT 340
++ + S + + S E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 341 IAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIF 395
+I +DE + + D +V TI +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL 145
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.002
Identities = 7/54 (12%), Positives = 16/54 (29%)
Query: 339 LTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392
L A+ +DE LD I ++ + + + ++
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM 398
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 404 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.86 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.58 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.28 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.15 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.93 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.91 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.27 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.13 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.72 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.63 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.63 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.51 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.44 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.41 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.41 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.39 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.32 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.26 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.14 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.13 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.11 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.1 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.02 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.0 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.99 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.97 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.94 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.94 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.92 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.92 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.9 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.88 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.87 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.85 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.84 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.65 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.65 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.62 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.61 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.6 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.57 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.57 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.55 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.48 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.47 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.45 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.44 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.44 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.43 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.41 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.41 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.4 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.4 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.38 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.33 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.32 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.3 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.3 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.28 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.26 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.23 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.22 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.2 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.19 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.18 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.15 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.11 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.08 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.08 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.03 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.99 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.97 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.94 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.94 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.93 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.92 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.9 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.87 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.83 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.78 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.77 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.76 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.74 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.72 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.71 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.65 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.6 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.57 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.57 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.52 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.5 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.48 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.48 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.46 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.45 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.43 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.4 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.39 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.37 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.36 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.36 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.33 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.27 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.25 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.21 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.19 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.16 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.14 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.12 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.11 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.09 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.08 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.07 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.01 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.97 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.95 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.91 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.9 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.9 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.87 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.85 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.84 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.84 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.83 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.81 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.79 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.78 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.78 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.74 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.73 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.68 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.68 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.63 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.6 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.59 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.56 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.55 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.52 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.49 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.47 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.43 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.42 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.41 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.35 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.34 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.33 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.32 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.26 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.24 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.23 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.18 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.15 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.14 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.14 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.09 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.05 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.02 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.95 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.89 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.87 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.81 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.81 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.81 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.79 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.77 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.74 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.72 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.7 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.66 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.63 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.63 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.59 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.56 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.42 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.4 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.37 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.33 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.33 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.26 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.09 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.0 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.96 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.94 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.92 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.88 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.85 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.74 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 92.71 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.65 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.64 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.53 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.13 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.09 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.94 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.72 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.58 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 91.39 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.21 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.15 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.86 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.59 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.4 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.33 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.03 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.97 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.85 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 88.83 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.78 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 88.65 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.51 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.38 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.27 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.0 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.74 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.68 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.76 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 86.74 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.6 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 85.9 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.71 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.64 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.41 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 84.58 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 84.48 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 83.97 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 83.95 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.92 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 83.64 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 83.09 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 82.88 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 82.31 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.93 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.58 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 81.07 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 80.39 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 80.03 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.4e-53 Score=397.12 Aligned_cols=201 Identities=23% Similarity=0.340 Sum_probs=174.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|+++||+++| ++.++|+||||+|++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|+++.
T Consensus 7 I~v~nlsk~y-------------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~--sG~I~i~g~~i~ 71 (239)
T d1v43a3 7 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFGDRDVT 71 (239)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CCEEEEcceecc
Confidence 8899999977 4578999999999999999999999999999999999998874 699999999864
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...+|.+|||+|++.+++.+||+||+.|+...+. .++++.+++++++++.++|.+..|+.. .+|||||||
T Consensus 72 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 143 (239)
T d1v43a3 72 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK---FPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 143 (239)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC--C---CCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred cCCcccceEEEEeechhhcccchHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 3 2345679999999999999999999999876553 456677788999999999998888764 579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||++ ++..+||++++
T Consensus 144 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~v 209 (239)
T d1v43a3 144 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAV 209 (239)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999999999999999999999999999999999765 999999999997 78999999875
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.7e-54 Score=397.57 Aligned_cols=202 Identities=27% Similarity=0.384 Sum_probs=144.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|+++||+++| ++.++|+||||++++||++||+||||||||||+++|+|+.+|. +|+|.++|+++.
T Consensus 1 Iev~nv~k~y-------------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~--sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT--SGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEESSSCCT
T ss_pred CEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC--CCEEEECCEECC
Confidence 5788888877 4578999999999999999999999999999999999998874 699999999865
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...+|.+|||+|++.+++.+||+||+.|+...+. .++++.+++++++++.++|.+..|+.. ++|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHH
Confidence 3 2345779999999999999999999999876553 344566788999999999999888874 479999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|++|||||+.+|++|||||||+|||+.++.+|++.|+++.+ .|+|||++|||++ ++..+||+++++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm 204 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVL 204 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999865 5999999999997 799999999763
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1e-52 Score=391.81 Aligned_cols=202 Identities=25% Similarity=0.347 Sum_probs=180.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.| ++.++|+||||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.++
T Consensus 3 ~i~v~nl~k~y-------------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred cEEEEeEEEEE-------------CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEEe
Confidence 37889999877 457799999999999999999999999999999999999887 469999999875
Q ss_pred chh-------hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCC
Q 015591 258 VQE-------TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNG 330 (404)
Q Consensus 258 ~~~-------~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~ 330 (404)
... ..++.+|||+|++.+++.+||+||+.|+...+. .+..+.+++++++++.+++.+..++.. ++
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 321 135679999999999999999999999987653 345677788999999999998888774 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||||||||++|||||+.+|++|||||||+|||+.++..|++.|+++.++ |.|||++|||++ ++..+||++++
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~v 212 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAV 212 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999765 999999999997 78999999875
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.5e-53 Score=394.80 Aligned_cols=205 Identities=27% Similarity=0.384 Sum_probs=181.2
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+++|+. ++..+|+||||+|++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~--~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS--TGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS--EEEEEETTEEE
T ss_pred EEEEEeEEEEECC-----------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC--CceEEECCEEe
Confidence 3889999998842 3567999999999999999999999999999999999998874 69999999875
Q ss_pred ch------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCC
Q 015591 258 VQ------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 258 ~~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~L 331 (404)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.++|.+..|+.. .+|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhC
Confidence 32 234567999999999999999999999987544 3456677788999999999998888875 479
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||||++|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|+|++|||++ ++.++||+++++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm 214 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVL 214 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999755 999999999997 789999998753
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-52 Score=387.64 Aligned_cols=207 Identities=24% Similarity=0.374 Sum_probs=176.9
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|+++||+++|+.. .....+|+||||+|++||++||+||||||||||+++|+|+.+| .+|+|+++|+++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEeCCC---------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC--CcceeEECCEEcC
Confidence 7899999988531 1124589999999999999999999999999999999999887 4699999998754
Q ss_pred h---hh---h-cceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCC-CccccccCCCCCC
Q 015591 259 Q---ET---F-ARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDG-IKDSLVGIPGVNG 330 (404)
Q Consensus 259 ~---~~---~-~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~vg~~~~~~ 330 (404)
. .. + ++.+|||+|++.++|.+||+||+.++...+.....+..+..+++.+.++.++|.+ ..+... ++
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-----hh
Confidence 2 11 2 3569999999999999999999999987665545566667778889999999875 455553 47
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 331 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 331 LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||||+|||||+.+|++|||||||||||+.++..|++.|+++.++ |+|||++|||++ +..+|||+++
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~ 217 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIY 217 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999765 999999999985 3479999875
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-52 Score=389.93 Aligned_cols=205 Identities=24% Similarity=0.301 Sum_probs=180.0
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||+++|... .+..++|+||||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc--cCCceEEcCeEee
Confidence 7899999988531 1224689999999999999999999999999999999999887 4699999999753
Q ss_pred h------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCC
Q 015591 259 Q------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLS 332 (404)
Q Consensus 259 ~------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LS 332 (404)
. ..+|+.+|||+|++.+++.+||+||+.++..++. .+.++.+++++++++.++|.+..|... ++||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 2345779999999999999999999999876553 345666788999999999998888774 4799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 333 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 333 gGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
|||||||+|||||+.+|++|||||||+|||+.++..|++.|++++++ |.|||++|||++ ++..+||++++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~v 213 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAV 213 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999765 999999999997 78889999875
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.5e-52 Score=386.36 Aligned_cols=198 Identities=20% Similarity=0.301 Sum_probs=175.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||+++|+ + .+|+||||+|++||+++|+||||||||||+++|+|+.+|. +|+|.++|+++.
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~--sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC--CCEEEEccEecc
Confidence 67889998762 2 4899999999999999999999999999999999998874 699999999865
Q ss_pred h-hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 259 Q-ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 259 ~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ...++.+|||+|++.+++.+||+||+.|+..++... +.++++++++.+++.+..|+..+ +|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK------DPKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC------CHHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhcccc------HHHHHHHHHHHhcchhhHhCChh-----hCCHHHhc
Confidence 3 234667999999999999999999999998766422 13568899999999999888754 79999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCHHHHHhccccccC
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVD-TGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||++ ++..+||+++++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm 201 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVV 201 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEE
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999975 5999999999997 799999998753
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3e-50 Score=376.06 Aligned_cols=201 Identities=25% Similarity=0.312 Sum_probs=180.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
|.++||+++| +++++|+||||++++||++||+||||||||||+++|+|+..|. +|+|.++|.++.
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~--~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEETTEETT
T ss_pred EEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CCEEEECcEecc
Confidence 7788888876 5678999999999999999999999999999999999998874 699999998753
Q ss_pred h--hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHH
Q 015591 259 Q--ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQR 336 (404)
Q Consensus 259 ~--~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 336 (404)
. ...++.+|||||...+++.+|++||+.|...++. ....+..+.++++++.+++.+..+..++ +||||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred cChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHH
Confidence 2 3457789999999999999999999999877653 2345566778999999999988888764 7999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
||++|||||+.+|++|||||||+|||+.++.++.+.|++++++|+|||++||+++ ++.++||++++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~v 205 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIAL 205 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999888999999999997 79999999875
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.6e-50 Score=375.41 Aligned_cols=203 Identities=21% Similarity=0.309 Sum_probs=173.2
Q ss_pred cEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 177 LTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 177 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
..++++||+++| ++.++|+||||++++||++||+||||||||||+|+|+|+.+|. +|+|.++|++
T Consensus 5 ~~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~--~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ--KGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEE
T ss_pred eEEEEeeEEEEE-------------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEEecccc
Confidence 358999999877 4578999999999999999999999999999999999998874 6999999998
Q ss_pred Cch---hh-hcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-CCCCCccccccCCCCCCC
Q 015591 257 KVQ---ET-FARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-ELDGIKDSLVGIPGVNGL 331 (404)
Q Consensus 257 ~~~---~~-~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~vg~~~~~~L 331 (404)
+.. .. .+..++|++|+..+++.+||+||+.+....+.. .....+.++++++.+ ++.+..++..+ +|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred cccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhChHHHHhCchh-----hC
Confidence 643 12 234589999999999999999999987654322 233345566666665 57777777654 79
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 332 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 332 SgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++||+++ ++.++||+++++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl 212 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVL 212 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999888999999999997 789999998753
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.9e-50 Score=377.66 Aligned_cols=203 Identities=23% Similarity=0.277 Sum_probs=176.2
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||+++| ++.++|+||||+|++||++||+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 3 Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEE-------------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC--CCCCEEECCEEec
Confidence 7889998876 457799999999999999999999999999999999999887 4699999998753
Q ss_pred h----------------hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCC-ccc
Q 015591 259 Q----------------ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGI-KDS 321 (404)
Q Consensus 259 ~----------------~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~ 321 (404)
. ...++.+|||+|++.+++.+||+||+.++..... ..+..+..+++.++++.+++.+. .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhcc
Confidence 1 1345679999999999999999999998743221 23456677889999999999763 344
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 322 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 322 ~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
.. .+|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|++++++|+|||++|||++ ++..+|||+
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred Cc-----ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEE
Confidence 32 479999999999999999999999999999999999999999999999988999999999997 789999999
Q ss_pred ccC
Q 015591 402 KQF 404 (404)
Q Consensus 402 l~~ 404 (404)
+++
T Consensus 220 ~vm 222 (258)
T d1b0ua_ 220 IFL 222 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7e-50 Score=377.48 Aligned_cols=206 Identities=23% Similarity=0.285 Sum_probs=177.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||+++| ++.++|+||||++++||++||+||||||||||+|+|+|+.+|+ +|+|.++|+++
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~--~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC--CcEEEECCEec
Confidence 37889998876 4578999999999999999999999999999999999998874 69999999986
Q ss_pred ch---h-hhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcC----------ccCChhhHHHHHHHHHHHcCCCCCccccc
Q 015591 258 VQ---E-TFARVSGYCEQTDIHSPQITVEESVIFSAWLRLA----------PEINSKTKAEFVNEVLETIELDGIKDSLV 323 (404)
Q Consensus 258 ~~---~-~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~----------~~~~~~~~~~~~~~~l~~l~l~~~~~~~v 323 (404)
.. . ..++.++|++|++.+++.+||+||+.++...+.. .....++..+++.++++.+++.+..|+.+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence 43 2 2345699999999999999999999987543211 11123344567889999999998888876
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccccc
Q 015591 324 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 324 g~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
+ +|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|++++++|+|||++|||++ +++++||++++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEE
Confidence 5 69999999999999999999999999999999999999999999999888999999999998 79999999976
Q ss_pred C
Q 015591 404 F 404 (404)
Q Consensus 404 ~ 404 (404)
+
T Consensus 223 m 223 (254)
T d1g6ha_ 223 M 223 (254)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-50 Score=376.39 Aligned_cols=207 Identities=24% Similarity=0.395 Sum_probs=166.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.|+|+||+|.|+. +++.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.+||+++
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEET
T ss_pred CeEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC--CCEEEECCEEe
Confidence 3789999998842 3567999999999999999999999999999999999998874 69999999985
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTE 334 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgG 334 (404)
. ...+++.++||+|++.+ +..||+||+.++........+....+.....+.++ .+....++.++..| ..||||
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~t~i~~~g-~~LSGG 143 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVL-LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS--ELREGYNTIVGEQG-AGLSGG 143 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCC-TTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHT--TSTTGGGSBCSTTT-TCCCHH
T ss_pred cccchhhhhceEEEEeccccc-CCccccccccccCccccHHHHHHHHHHHhhHHHHH--hhhcchhhhcCCCC-CccCHH
Confidence 4 35678899999997765 56799999988642111111111111112222222 34566788888765 469999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 335 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 335 qrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||+|||||+++|+|||||||||+||+.++..|++.|+++. +|+|+|+|||+++ ....||+++++
T Consensus 144 q~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl 210 (241)
T d2pmka1 144 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVM 210 (241)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEE
T ss_pred HHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999986 5899999999996 34789999863
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.8e-49 Score=372.69 Aligned_cols=203 Identities=26% Similarity=0.360 Sum_probs=167.5
Q ss_pred CCcEEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 175 EPLTVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 175 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
....|+++||+|.|+. +.+++|+||||+|++||++||+||||||||||+++|+|++.|. +|+|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g 79 (255)
T d2hyda1 13 KQGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT--SGQILIDG 79 (255)
T ss_dssp CSCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS--EEEEEETT
T ss_pred CCCEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc--ccccccCC
Confidence 3456999999998742 3467999999999999999999999999999999999998874 69999999
Q ss_pred ccCc---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCcccccc
Q 015591 255 YPKV---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVG 324 (404)
Q Consensus 255 ~~~~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg 324 (404)
.++. ...+|+.++||+|++.+ +..||+|||.|+.. .... +.+.++++.. .+++..|+.++
T Consensus 80 ~~i~~~~~~~lr~~i~~v~Q~~~l-f~~Ti~eNi~~g~~-----~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~ 149 (255)
T d2hyda1 80 HNIKDFLTGSLRNQIGLVQQDNIL-FSDTVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVG 149 (255)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCC-CSSBHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EEcccCCHHHhhheeeeeeccccC-CCCCHHHHHhccCc-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhc
Confidence 8753 35678899999997765 56799999998632 1111 1223333333 45566788888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 325 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 325 ~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+.+ .+||||||||++|||||+++|+|||||||||+||+.++..|++.|+++. +++|+|+|||+++ ....||+++++
T Consensus 150 ~~g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l 225 (255)
T d2hyda1 150 ERG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVI 225 (255)
T ss_dssp GGG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEE
T ss_pred CCC-CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHHhCCEEEEE
Confidence 754 4699999999999999999999999999999999999999999999986 5899999999997 35789999863
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-49 Score=371.09 Aligned_cols=209 Identities=22% Similarity=0.332 Sum_probs=168.1
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.|+++||+|.|+. ..++.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.+||+++
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~--~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT--GGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEETTEEG
T ss_pred eEEEEEEEEECCC----------CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC--cCEEEECCEec
Confidence 4999999998852 12356999999999999999999999999999999999999874 69999999985
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCc-cCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCH
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLST 333 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSg 333 (404)
. ...+++.++||+|++.++ ..||+||+.++....... ......+.....+.++ .+++..++.++..+ ..|||
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~~-~~LSG 154 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEAG-SQLSG 154 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSSC-SSSCH
T ss_pred chhhhHHHHHHhhhcccccccc-CcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHH--hccccchhhHhccC-ccCCh
Confidence 4 345678899999988765 579999999864221110 0111111222334444 56667788887654 57999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccccC
Q 015591 334 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 334 GqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||||++|||||+++|+|||||||||+||+.++..|++.|+++.++ |+|+|+|||+++ ..+.||+++++
T Consensus 155 GqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl 224 (251)
T d1jj7a_ 155 GQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFL 224 (251)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEE
T ss_pred hHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999998754 899999999985 45789999863
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9.4e-50 Score=373.74 Aligned_cols=199 Identities=26% Similarity=0.415 Sum_probs=162.6
Q ss_pred EEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCc
Q 015591 179 VAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKV 258 (404)
Q Consensus 179 i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 258 (404)
++++||+|+|+ +++++|+||||++++||++||+||||||||||+++|+|+++|. +|+|.+||.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT--AGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS--BSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC--CCEEEECCEEec
Confidence 78999999874 2356999999999999999999999999999999999998874 699999999864
Q ss_pred h---hhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHc-------CCCCCccccccCCCC
Q 015591 259 Q---ETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDGIKDSLVGIPGV 328 (404)
Q Consensus 259 ~---~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~~~~~~vg~~~~ 328 (404)
. ..+++.++||+|++.+++ .||+||+.++... ..... .+.+.++.. .+.+..++.+++.|.
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 138 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----DYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGERGV 138 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----CSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTTSB
T ss_pred cccHHHHHhheEEEccccccCC-cchhhheeccccc----ccchh----hHHHHHHHHHhhhhhccCcccccccccCCCC
Confidence 3 456788999999877655 5999999875321 11111 122222222 334566778887654
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 329 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++. +|+|+|++||+++ ....||+++++
T Consensus 139 -~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl 210 (242)
T d1mv5a_ 139 -KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFI 210 (242)
T ss_dssp -CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEE
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEE
Confidence 699999999999999999999999999999999999999999999987 5999999999986 34679999863
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.1e-48 Score=363.61 Aligned_cols=181 Identities=23% Similarity=0.376 Sum_probs=161.9
Q ss_pred eeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch-hhhcceeEEeecCCCCCCCCCHHHHHHH
Q 015591 209 DVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ-ETFARVSGYCEQTDIHSPQITVEESVIF 287 (404)
Q Consensus 209 ~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~ 287 (404)
||||+++ +|+++|+||||||||||+++|+|+.+|. +|+|.++|+++.. ...++.+|||+|++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~--~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC--ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 8999995 6899999999999999999999998874 6999999998653 2346789999999999999999999999
Q ss_pred HhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 015591 288 SAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 367 (404)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~ 367 (404)
+.. ...+.+.+++++++++.++|.+..+... ++|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 94 ~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GLR-----NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hhc-----ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 742 2345566788999999999999888875 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEecCCCHHHHHhcccccc
Q 015591 368 IIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVKQ 403 (404)
Q Consensus 368 ~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l~ 403 (404)
.+++.|++++++ |.|||++||+++ ++..+||++++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~v 199 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAV 199 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 999999999765 999999999997 78999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-48 Score=365.35 Aligned_cols=203 Identities=23% Similarity=0.339 Sum_probs=164.5
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.|+++||+|.|+. .+.++|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.+||.++
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID--EGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS--EEEEEETTEET
T ss_pred EEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC--ccEEEECCccc
Confidence 5999999998742 3456999999999999999999999999999999999998874 69999999885
Q ss_pred c---hhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhH-----HHHHHHHHHHcCCCCCccccccCCCCC
Q 015591 258 V---QETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTK-----AEFVNEVLETIELDGIKDSLVGIPGVN 329 (404)
Q Consensus 258 ~---~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~vg~~~~~ 329 (404)
. ...+++.++||+|++. ++..|+++|+.++... ....++. ...+.+.++ .+++..++.++..+ .
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~-l~~~ti~~n~~~~~~~----~~~~~~i~~a~~~~~l~~~i~--~l~~gl~t~~~~~~-~ 151 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVH-LFNDTVANNIAYARTE----EYSREQIEEAARMAYAMDFIN--KMDNGLDTIIGENG-V 151 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCC-CCSSBHHHHHHTTTTS----CCCHHHHHHHHHTTTCHHHHH--HSTTGGGSBCCTTS-C
T ss_pred chhhhhhhhheEEEEeeccc-cCCcchhhhhhhcCcc----cCCHHHHHHHHHHHhHHHHHH--hccccchhhhcCCC-C
Confidence 4 3567788999999765 4567999999986321 1111111 111223333 24455678887754 5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++. +++|+|+|||+++ ..+.||+|+++
T Consensus 152 ~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl 223 (253)
T d3b60a1 152 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVV 223 (253)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEE
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHH--HHHhCCEEEEE
Confidence 799999999999999999999999999999999999999999999987 5899999999996 34789999863
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.5e-44 Score=324.37 Aligned_cols=191 Identities=23% Similarity=0.336 Sum_probs=157.3
Q ss_pred EEEEeceeEEeeccccccccccccCceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccC
Q 015591 178 TVAFQDLKYYIDTPLEMRERGFTEKKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPK 257 (404)
Q Consensus 178 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 257 (404)
.++++||++.|+ +++|+||||++++||+++|+||||||||||+++|+|+.+| .+|+|.+||+++
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc--CCCEEEECCEeh
Confidence 378899998762 4699999999999999999999999999999999999887 469999999986
Q ss_pred chhhhcceeEEeecCCCCCCCCCHHHHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Q 015591 258 VQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRK 337 (404)
Q Consensus 258 ~~~~~~~~~g~v~Q~~~~~~~~Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 337 (404)
. ..+..++|++|+..++..+|++|++.+...++... .. .+.+.+.++.+++.+..+ .+ .+|||||||
T Consensus 66 ~--~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~-~~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VN----KNEIMDALESVEVLDLKK-KL-----GELSQGTIR 132 (200)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CC----HHHHHHHHHHTTCCCTTS-BG-----GGSCHHHHH
T ss_pred h--HhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCc-cC----HHHHHHHHHHcCCccccc-cc-----CcCCCcHHH
Confidence 4 35667899999888888999999999887665322 11 233567778888766443 33 369999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCHHHHHhccccc
Q 015591 338 RLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDT-GRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 338 Rl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~~~~i~~~fd~~l 402 (404)
|++|||||+.+|+++||||||+|||+.++..+++.|+++.++ |.+||.++|+. ++||.+.
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~ 193 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNE 193 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEE
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhh
Confidence 999999999999999999999999999999999999998765 55555555554 3688754
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-44 Score=332.82 Aligned_cols=182 Identities=24% Similarity=0.362 Sum_probs=157.4
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCch---hhhcceeEEeecCCCCCCCCCHH
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQ---ETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
.|+||||+|++||++||+||||||||||+++|+|+. + .+|+|.++|+++.. ...+...+|++|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~--~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-S--GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-C--CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C--CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 699999999999999999999999999999999975 3 35999999997543 33445678999987777788999
Q ss_pred HHHHHHhhhhcCccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEe
Q 015591 283 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 355 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~-------~p~iLlLD 355 (404)
+++.+... ...+.+.++++++.+++.+..++.+. .||||||||++|||||++ +|+|||||
T Consensus 91 ~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccc--------hhhHHHHHHHHHHhcCCHhHhCcChh-----hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 99987532 12234567889999999988887754 699999999999999997 77999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 356 EPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 356 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++++
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl 205 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLL 205 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEE
Confidence 999999999999999999999889999999999997 799999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.4e-44 Score=339.77 Aligned_cols=180 Identities=21% Similarity=0.315 Sum_probs=143.2
Q ss_pred ceeeeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecCCCCCCCCCHH
Q 015591 203 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVE 282 (404)
Q Consensus 203 ~~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~~~~~~~~Tv~ 282 (404)
++++|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|+ ++||+|++.+++ .||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~--~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS--EEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC--CcEEEECCE----------EEEEeccccccC-ceee
Confidence 467999999999999999999999999999999999998874 699999983 799999776654 6999
Q ss_pred HHHHHHhhhhcCccCChhhHHH---HHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 015591 283 ESVIFSAWLRLAPEINSKTKAE---FVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 359 (404)
Q Consensus 283 e~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPts 359 (404)
||+.|+... ......+ .+........+.+..++.++..+ .+|||||||||+|||||+++|+|||||||||
T Consensus 115 eni~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 115 ENIIFGVSY------DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHHTTTSCC------CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred ccccccccc------cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhc-cCCCHHHHHHHHHHHHHHhCccchhhcCccc
Confidence 999886421 1111111 11111223355666777777654 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccccC
Q 015591 360 GLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVKQF 404 (404)
Q Consensus 360 gLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l~~ 404 (404)
+||+.++..+++.+.+....|+|+|++||+++ ....||+++++
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl 230 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILIL 230 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEE
Confidence 99999999998764443346899999999984 46789999863
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.58 E-value=1.4e-16 Score=138.77 Aligned_cols=143 Identities=13% Similarity=0.033 Sum_probs=84.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCccCchhhhcceeEEeecC--CC--CCCCCCHHHHHHHHhhhhcC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYPKVQETFARVSGYCEQT--DI--HSPQITVEESVIFSAWLRLA 294 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~g~v~Q~--~~--~~~~~Tv~e~l~~~~~~~~~ 294 (404)
.++|+||||||||||+++|+|...+. .|.+.+.+.+......+ .++..+. .. .....+..+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~--~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------- 66 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKR--AIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSSKFFTS----------- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG--EEEEEEEEEC------C--CEEEEEETTCCEEEEEETTCCC-----------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCC--cceEEECCcchHHHHHh--hhhhhhhhhHHHHHHhhhhhhh-----------
Confidence 37999999999999999999987653 58888877653222211 1221110 00 000000000
Q ss_pred ccCChhhHHHHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 015591 295 PEINSKTKAEFVNEVLETIELDGIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVK 374 (404)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~ 374 (404)
.....+ .+.. .+. ..+|+|+++|.++++++..+|++|++|||....+ ....+.+.+.
T Consensus 67 --~~~~~~----------~~~~--~~~-------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~ 123 (178)
T d1ye8a1 67 --KKLVGS----------YGVN--VQY-------FEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVR 123 (178)
T ss_dssp --SSEETT----------EEEC--HHH-------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHH
T ss_pred --hhhhhh----------hhcC--cch-------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHH
Confidence 000000 0000 000 1379999999999999999999999999854433 3345566666
Q ss_pred HHHh-CCCeEEEEecCCCHHHHHhcccc
Q 015591 375 NVVD-TGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 375 ~l~~-~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
++.+ .+.++|+++|+.+ +...+|++
T Consensus 124 ~~l~~~~~~il~~~h~~~--~~~~~~~i 149 (178)
T d1ye8a1 124 QIMHDPNVNVVATIPIRD--VHPLVKEI 149 (178)
T ss_dssp HHHTCTTSEEEEECCSSC--CSHHHHHH
T ss_pred HHhccCCCEEEEEEccHH--HHHhhceE
Confidence 6544 4899999999875 33445543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.15 E-value=1.6e-10 Score=108.45 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 329 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL----~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
..+|.|||+.+.++..+ ..+|+++++|||-++|||.....+.+.|++.. .+.-||+|||.|. +.+.+|++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~~~QviitTHsp~--~~~~~d~~~ 292 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLH 292 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHH--HHHhcccEE
Confidence 35899999998777653 34678999999999999999999999999886 4678999999996 578888764
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=7.6e-10 Score=107.68 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhccccc
Q 015591 329 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEVK 402 (404)
Q Consensus 329 ~~LSgGqrqRl~IAraL----~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~l 402 (404)
..||||||.++++|..+ ..++++++||||+++||+..+..+.+.|+++...+.-+|+|||+| ++++.+|+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~ 406 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV 406 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEE
Confidence 45799999998877543 467789999999999999999999999998865566799999998 4788889864
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.27 E-value=5e-06 Score=74.48 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=36.9
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q 015591 345 LVANPSIIFMDEPTTGLDARAAAIIMR-AVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 345 L~~~p~iLlLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tH~~~ 391 (404)
.+.+..++|+||+..|=|+.....+.. .++.+.+.+..++++||..+
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 345567899999999999988887664 44556666889999999853
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=1.7e-05 Score=71.32 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=36.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCeEEEEecCCC
Q 015591 346 VANPSIIFMDEPTTGLDARAAAIIMRA-VKNVVDT-GRTIVCTIHQPS 391 (404)
Q Consensus 346 ~~~p~iLlLDEPtsgLD~~~~~~i~~~-l~~l~~~-g~tii~~tH~~~ 391 (404)
+.+..++|+||+..|=|+.....+... ++.+..+ +..++++||...
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 445569999999999999998887654 6667654 568899999764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.72 E-value=1.1e-05 Score=73.52 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=27.8
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
-|+++..=+.+|+++.|.|++|+|||||+.-++
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 455555558999999999999999999987776
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00011 Score=66.28 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=33.6
Q ss_pred HHhcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCC
Q 015591 344 ELVANPSIIFMDEPTT-----GLDARAAAIIMRAVKNVVDT-GRTIVCTIHQP 390 (404)
Q Consensus 344 aL~~~p~iLlLDEPts-----gLD~~~~~~i~~~l~~l~~~-g~tii~~tH~~ 390 (404)
.-..+|+++++|--++ --|......+++.|+++++. |.+||++.|-.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhcc
Confidence 3457899999995432 12666667788888887754 89999998843
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=2e-06 Score=73.43 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=28.3
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
.+++.++.+.+| +++|+|||||||||+|++|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 456778888877 99999999999999999986
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.44 E-value=3e-05 Score=66.36 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
|+++.|+||||||||||++.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999997643
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.41 E-value=3.8e-05 Score=64.23 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCc
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGY 255 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 255 (404)
.|+++.|.||+||||||+.+.|+..... --+.+++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~----~~~~~~~d 38 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV----PKVHFHSD 38 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS----CEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC----CEEEecHH
Confidence 5889999999999999999999975432 24556653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.41 E-value=4.4e-05 Score=68.05 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK 251 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~ 251 (404)
+|+.++++|+||+|||||+|.|.+..... .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~--T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR--VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh--ccCcc
Confidence 48899999999999999999999854322 36654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=3.6e-05 Score=63.99 Aligned_cols=21 Identities=52% Similarity=0.586 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
+++|+|++|||||||++-|+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999985
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.32 E-value=5.3e-05 Score=63.26 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|.++.|+|++||||||+.+.|+-.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999964
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=6.5e-05 Score=62.64 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+++.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999753
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00011 Score=64.56 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+|.++.|+||||+|||||.+.|.-
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999998864
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.13 E-value=0.00011 Score=61.20 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
++|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 567789999999999999999999644
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.11 E-value=5.1e-05 Score=67.85 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEE
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIK 251 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~ 251 (404)
+|+.++++|+||+|||||+|.|.|.... ..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~--~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL--RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHh--hhcccc
Confidence 4788999999999999999999985332 236654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.10 E-value=0.00011 Score=61.50 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+||+|||||||.+.|+...
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999743
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.02 E-value=0.00015 Score=60.64 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC-CCceeeEEEECC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRKT-TGSMEGEIKIGG 254 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~~-~~~~~G~I~i~G 254 (404)
++++|+|++|||||||++-|...+. .+..-|.|..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 3789999999999999987765322 222235554443
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.00 E-value=0.00019 Score=68.41 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=22.5
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
+.+.++.+++|+|||||||||+|.+|.
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 344555599999999999999999983
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.99 E-value=0.00018 Score=59.67 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.+++.|.|++||||||+.+.|+....
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999997543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.97 E-value=0.00018 Score=58.71 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998753
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.00016 Score=60.30 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999999854
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.0015 Score=58.88 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
..-+.|.||+|+|||+|.+.|+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 345789999999999999999963
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.00013 Score=61.88 Aligned_cols=25 Identities=44% Similarity=0.492 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+|.++.|+|++||||||+.+.|+-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999863
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.92 E-value=0.00021 Score=58.97 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++.|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999644
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.90 E-value=0.00017 Score=61.88 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|++|+|||||+|.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999853
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00022 Score=58.11 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999644
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.87 E-value=0.00026 Score=59.18 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++++|.|++||||||+.+.|+-+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999864
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.85 E-value=0.00023 Score=58.91 Aligned_cols=21 Identities=48% Similarity=0.601 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+||+||||||+.+.|+-.
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999853
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.84 E-value=0.00025 Score=60.13 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++||-|++|||||||.+.|+-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.65 E-value=0.00047 Score=58.90 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+++|+||+||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.0004 Score=59.40 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+||||||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998753
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00057 Score=57.96 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=25.4
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+-+++|+++.|.||+|+|||||+.-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999999999999987774
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.00052 Score=58.52 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
..+.|+||||+|||||++-|..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998875
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.60 E-value=0.00043 Score=60.76 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.57 E-value=0.00055 Score=57.18 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.57 E-value=0.00036 Score=59.14 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999873
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.55 E-value=0.0005 Score=57.83 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||+|.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.48 E-value=0.00059 Score=58.59 Aligned_cols=20 Identities=55% Similarity=0.667 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+||||||||||++.|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.00065 Score=58.92 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++||-|++|||||||.+.|+-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.45 E-value=0.00073 Score=57.77 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-.++.|+||+||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999643
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.44 E-value=0.00066 Score=56.55 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.|+|++||||||+.+.|+..
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.44 E-value=0.0006 Score=58.38 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=23.9
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.+.++.|+||+||||||+.+.|+..
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00076 Score=56.37 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.41 E-value=0.00085 Score=57.04 Aligned_cols=25 Identities=44% Similarity=0.525 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++|--+.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677888999999999999999994
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.00064 Score=58.26 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.40 E-value=0.00081 Score=56.54 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|++|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.40 E-value=0.00061 Score=56.77 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|||||||++.|.+-
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999884
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.38 E-value=0.00068 Score=56.80 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+.|+|++||||||+.+.|+-.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999853
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.33 E-value=0.00062 Score=57.35 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
+||+|.+|+|||||+|.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999984
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.001 Score=54.64 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
=-++|+|++|+|||||++.|.|.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.30 E-value=0.00077 Score=54.67 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999999974
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0064 Score=54.88 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=25.0
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+=+++|.++-|.||+|+|||||+-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6789999999999999999999866664
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.28 E-value=0.00096 Score=55.79 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+++.|.|++||||||+.+.|+.++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367889999999999999998754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.26 E-value=0.00098 Score=55.47 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+.|+|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.23 E-value=0.00096 Score=56.70 Aligned_cols=22 Identities=18% Similarity=0.364 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.22 E-value=0.00089 Score=54.39 Aligned_cols=20 Identities=40% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|++|+|||||++-+.+
T Consensus 3 ivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999999986
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0011 Score=56.25 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
++.|+||.||||||..+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.19 E-value=0.00095 Score=54.56 Aligned_cols=38 Identities=5% Similarity=0.025 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 015591 337 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNV 376 (404)
Q Consensus 337 qRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l 376 (404)
-+-.++...+.+..+=++ |+|+.+-....++++.|.+.
T Consensus 127 i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~ 164 (169)
T d1upta_ 127 MANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVET 164 (169)
T ss_dssp HHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHH
Confidence 333445555666566555 99999999888888777554
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.18 E-value=0.0013 Score=55.27 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-+||+|++|+|||||++.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999974
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.15 E-value=0.0012 Score=55.37 Aligned_cols=21 Identities=38% Similarity=0.590 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.|+||.||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999853
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.00074 Score=56.40 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+|.+++|||||+|.|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999999884
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.08 E-value=0.0014 Score=56.77 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|-||+||||||+.+.|+-.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999963
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.08 E-value=0.0016 Score=54.95 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445799999999999999999886
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.03 E-value=0.0016 Score=55.65 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++++|.+|||||||.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999953
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.99 E-value=0.0018 Score=56.48 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=29.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
++|.++-|.|.||||||||.+.|.-.+......-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence 679999999999999999999997432100001256677743
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.97 E-value=0.0017 Score=53.52 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|+.|+|||||++.|.+.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 789999999999999999984
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.0021 Score=55.90 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=24.9
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+=+++|+++.|.||+|||||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999999977763
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.94 E-value=0.0013 Score=58.39 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGG 254 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 254 (404)
...+.|.||+|||||||.+.|++.... +-+.+++
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~----~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG----NVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT----CCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhc----ceEEEec
Confidence 346889999999999999999985432 3455665
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.93 E-value=0.0019 Score=54.44 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999964
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.92 E-value=0.0018 Score=55.02 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999963
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0019 Score=55.60 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+++|.||+||||||+-+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999743
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.87 E-value=0.0016 Score=60.77 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.8
Q ss_pred eeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 015591 210 VTGSLRPGVLTALMGVSGAGKTTLLDVLAGRKTT 243 (404)
Q Consensus 210 vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~~ 243 (404)
+..-++.|.-+.|.|+.||||||||+.|.+..++
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHHhCCCEEEEeeccccchHHHHHHhhhccc
Confidence 3444566777999999999999999999987654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.83 E-value=0.0019 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998744
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.78 E-value=0.002 Score=57.90 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999953
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.77 E-value=0.0022 Score=54.09 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
+||+|...||||||+|.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 999999999999999999974
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.76 E-value=0.0022 Score=53.86 Aligned_cols=21 Identities=43% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.|+||.||||||+.+.|+..
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999853
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0024 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+.|+||.||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999853
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.72 E-value=0.0024 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0018 Score=56.57 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
++.+++|-|+-||||||+++.|+..+
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.003 Score=54.96 Aligned_cols=26 Identities=42% Similarity=0.497 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|.+++|-|+-||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999998763
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.60 E-value=0.00068 Score=55.65 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|.+|+|||||+|.|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.57 E-value=0.0027 Score=54.50 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.57 E-value=0.018 Score=51.92 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=25.5
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+=++.|.++-+-||+|||||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 5789999999999999999999977775
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.52 E-value=0.003 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.++|+||.||||||+.+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999963
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.50 E-value=0.0039 Score=53.97 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.9
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+-+++|+++.|.|++|+|||||..-++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999999877763
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.48 E-value=0.0032 Score=52.92 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
.+.|+||.||||||+.+.|+-.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999853
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0037 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+|.+++|-|+-||||||+++.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999863
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.46 E-value=0.0029 Score=52.22 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|++|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999998876
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.45 E-value=0.0041 Score=54.44 Aligned_cols=27 Identities=37% Similarity=0.613 Sum_probs=23.6
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
+=+++|+++.|.||+|||||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999999999999986554
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.43 E-value=0.0038 Score=55.00 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.+.++.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 467899999999999999998874
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.40 E-value=0.0045 Score=53.29 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=26.1
Q ss_pred eeeee-eeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 206 LLYDV-TGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 206 iL~~v-s~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
-||++ ++-+++|+++.|.|++|+|||||..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 35443 3468999999999999999999985443
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.004 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
..+.|.||+|+||||++++|+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999743
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.37 E-value=0.0045 Score=54.09 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.9
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+-+++|+++.|.|++|+|||||+.-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999999977764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.36 E-value=0.0044 Score=54.00 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998755564
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.36 E-value=0.0039 Score=53.71 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
++||.|+.||||||+.+.+.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0044 Score=54.08 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=24.6
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
+-+++|+++.|.|++|||||||.-.++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999999987776
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.27 E-value=0.004 Score=51.64 Aligned_cols=22 Identities=50% Similarity=0.659 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-++++|+.|+|||||++-+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999774
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.25 E-value=0.0041 Score=54.21 Aligned_cols=21 Identities=38% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
.+.|.||+|+||||++++|+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999999986
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.0051 Score=53.52 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
+|.+++|=|+-||||||+.+.|+-...
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999986544
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.0043 Score=57.84 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
...-++||.||.|||||||++.|..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHH
Confidence 3456899999999999999999974
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.16 E-value=0.0041 Score=51.58 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|++|+|||||++-+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999998764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.14 E-value=0.0045 Score=57.09 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.-+.+.||+|+|||+|.+.||..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 345678999999999999999974
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0041 Score=51.34 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|++|+|||||++.+.+
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999999998775
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.0048 Score=57.04 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++||-|++||||||+.+.|..+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHH
Confidence 8999999999999999998764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.0044 Score=51.44 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|++|+|||||++-+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.08 E-value=0.005 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.+.+.||+|+||||+.++|+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 377999999999999999997443
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.07 E-value=0.0046 Score=59.20 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
+||+|.+|+|||||+|.|.|.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999985
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.01 E-value=0.005 Score=54.01 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
++||+|...||||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHh
Confidence 599999999999999999986
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.0056 Score=53.18 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.|.||+|+||||++++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999863
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.95 E-value=0.012 Score=49.70 Aligned_cols=33 Identities=24% Similarity=0.117 Sum_probs=24.6
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.|+..-. .-.|.-+.|.|+||+|||||.-.|..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3444333 44588899999999999999877664
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.91 E-value=0.0063 Score=50.02 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.90 E-value=0.0076 Score=50.11 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=24.6
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+||.+++|-|+=|||||||.|.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 357899999999999999999999985
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.011 Score=49.42 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|++|+|||||++-+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999988863
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.87 E-value=0.0068 Score=52.94 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=19.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++-.+++++||+|+||||.+-=||-
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455899999999999998755553
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0056 Score=51.00 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997655
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.0068 Score=52.30 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
++||.|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999973
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0069 Score=50.00 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|.+|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987775
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.83 E-value=0.31 Score=43.26 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+..+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998853
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=0.0055 Score=50.48 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.79 E-value=0.0077 Score=52.35 Aligned_cols=23 Identities=43% Similarity=0.424 Sum_probs=19.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..+++++||+|+||||.+-=||.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999998866664
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.78 E-value=0.0032 Score=57.62 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=16.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 899999999999999998875
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.78 E-value=0.0057 Score=53.55 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+.+.||+|+||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999743
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.0076 Score=49.83 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|++|+|||||++.+.+.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCcCHHHHHHHHhCC
Confidence 689999999999999999885
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.73 E-value=0.0054 Score=51.31 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 377999999999999999876
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.0063 Score=50.08 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|.+|+|||||++.+.+
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997765
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.68 E-value=0.017 Score=48.76 Aligned_cols=33 Identities=30% Similarity=0.210 Sum_probs=25.8
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.++.....+ .|.-+.|.|+||+|||||...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 355545555 688999999999999999977764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0065 Score=50.31 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999987664
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.01 Score=49.22 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999976654
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.0089 Score=52.09 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 015591 217 GVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
-.+++++||+|+||||.+-=||-
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999998755564
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.56 E-value=0.0084 Score=55.70 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
..-.++|.|+.|||||||+..|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 355799999999999999999885
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.55 E-value=0.0096 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
..+.|.||.|+||||+++.|+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998643
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.0075 Score=50.07 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|++|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999997764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0087 Score=49.49 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.47 E-value=0.0077 Score=50.46 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987774
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0081 Score=49.42 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|.+|+|||||++-+.+
T Consensus 6 i~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988876
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.012 Score=48.78 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
++|+|..|+|||||++.+.+.
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999999874
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.0079 Score=49.25 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|..|+|||||++-+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.35 E-value=0.01 Score=48.53 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.34 E-value=0.011 Score=50.28 Aligned_cols=22 Identities=55% Similarity=0.850 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+++|-|.-||||||+++.|...
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.0088 Score=49.19 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|.+|+|||||++-+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.32 E-value=0.0099 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-+.|.||+|+|||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4789999999999999999963
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.26 E-value=0.011 Score=48.64 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988874
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.24 E-value=0.011 Score=51.27 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
+.|.||+|+||||+.++++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHH
Confidence 67899999999999999985
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.0094 Score=49.61 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|..|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.18 E-value=0.009 Score=49.49 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-+.++|++|+|||||++-+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3779999999999999999863
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.15 E-value=0.011 Score=51.48 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=15.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
.-.+++++||+|+||||.+-=||.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999998755553
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.14 E-value=0.0095 Score=50.49 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999997765
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.011 Score=49.02 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
+.|+|.+|+|||||++.+.+
T Consensus 5 ivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999988775
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.011 Score=48.74 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|.+|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.01 Score=49.08 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.02 E-value=0.0077 Score=49.97 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=8.6
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987775
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.00 E-value=0.011 Score=53.22 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.0
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+++..-+.|.||+|+|||+|.+.|++..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 3444558899999999999999999854
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.0092 Score=49.43 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|++|+|||||++-+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.014 Score=52.95 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=25.7
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|+.++-.| -+++|+||-++|||||||.|.|..
T Consensus 24 ~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 455544333 389999999999999999999853
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.87 E-value=0.014 Score=53.07 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 015591 219 LTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~ 238 (404)
++||-|+.|||||||.+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 78999999999999998775
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.81 E-value=0.015 Score=48.60 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.013 Score=48.27 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|..|+|||||++-+.+
T Consensus 6 i~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999986654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.81 E-value=0.014 Score=48.30 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|..|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.79 E-value=0.014 Score=51.85 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
-+.+.||+|+|||+|.+.|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 37899999999999999999743
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.016 Score=47.80 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|..|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999988874
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.74 E-value=0.013 Score=51.31 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=30.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 347 ANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 347 ~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+.+++++||.-. |.......+.+.+.+.. ....+|+++++++
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CCceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 3566999999854 77777777777776532 3456788988875
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.72 E-value=0.013 Score=52.99 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=30.7
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhC-CCCCCceeeEEEECCcc
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG-RKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g-~~~~~~~~G~I~i~G~~ 256 (404)
.=++.|.++-|.||+|+|||||+-.++. -...+. --|+||...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~--~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--VAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCC--EEEEEECCc
Confidence 5689999999999999999999755543 222221 246777765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=0.015 Score=50.14 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
+.|.||.|+||||++++|+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHH
Confidence 67999999999999999986
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.66 E-value=0.014 Score=48.21 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++++|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999997765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.63 E-value=0.017 Score=48.91 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
+|++|.-.+|||||++.|.|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999984
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.017 Score=47.57 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|++|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999988875
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.59 E-value=0.017 Score=48.49 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 015591 220 TALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~ 238 (404)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999884
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.56 E-value=0.03 Score=46.89 Aligned_cols=32 Identities=28% Similarity=0.113 Sum_probs=24.2
Q ss_pred eeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 207 LYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 207 L~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++. ++-.-.|.-+.|.|+||+|||||.-.|..
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444 44445688999999999999999866553
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.42 E-value=0.02 Score=52.07 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.4
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
+-+-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4677899999999999999999998885
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.017 Score=47.61 Aligned_cols=20 Identities=45% Similarity=0.569 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999996543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.019 Score=48.17 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|.+|+|||||++-+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 89999999999999987664
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.33 E-value=0.012 Score=51.79 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.|.||.|+||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 4556799999999999999863
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.33 E-value=0.02 Score=47.10 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.26 E-value=0.024 Score=50.56 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~ 240 (404)
+.|.||+|+|||+|.+.++..
T Consensus 41 iLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEecCCCCCchHHHHHHHHH
Confidence 789999999999999999974
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.019 Score=47.88 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999996665
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.024 Score=46.45 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|.+|+|||||++-+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999987764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.00 E-value=0.022 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++++|.-.||||||+|.|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999954
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.027 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
|...+.++||+|+|||.|.+.|+..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhh
Confidence 4446889999999999999999974
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.94 E-value=0.024 Score=49.15 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 015591 219 LTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~ 238 (404)
-+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998775
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.92 E-value=0.024 Score=47.26 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
+.++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999975554
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.88 E-value=0.026 Score=53.70 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=36.8
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 341 IAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 341 IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+..+|=.+|++++..|-. |.+++...++ .+..|+.|+.+.|-.+ .+...+|+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAVQ----ASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHHH----HHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHHH----HHhcCCeEEEEeccCc--hHhhhhhh
Confidence 555667899999999975 6666555443 3557999999999775 34445443
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.85 E-value=0.027 Score=49.00 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g 239 (404)
.++||.|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999963
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.74 E-value=0.025 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++++|.-.||||||+|.|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999954
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.027 Score=47.35 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
++|+|++|+|||||++-+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999977664
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.65 E-value=0.026 Score=50.76 Aligned_cols=20 Identities=50% Similarity=0.720 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 015591 219 LTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~ 238 (404)
-+||+|+.|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999884
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.64 E-value=0.027 Score=51.54 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHH
Q 015591 330 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIF 395 (404)
Q Consensus 330 ~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~ 395 (404)
.++..+.+++....-+...|-++.+-.- |......+-+..+...+++..++.++...+.++.
T Consensus 197 ~~~~~e~~~~~~~~~~~~kP~~~v~Nk~----d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~~L~ 258 (319)
T d1wxqa1 197 KWSQDDLLAFASEIRRVNKPMVIAANKA----DAASDEQIKRLVREEEKRGYIVIPTSAAAELTLR 258 (319)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEECG----GGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred hcCHHHHHHhHHHhhhhcCchhhhcccc----cchhhHHHHHHHHHHhhcCCEEEEecHHHHHHHH
Confidence 4677888888887777788877664321 1112333444444444567787777766554443
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.53 E-value=0.023 Score=54.86 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
=+.++||+|+|||-|.+.||+...
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998543
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.037 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++++|=|+-||||||+++.|+-.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47889999999999999999863
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.09 E-value=0.037 Score=47.50 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-+|++|+-++|||||++.|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 389999999999999999863
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.94 E-value=0.036 Score=50.09 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 015591 219 LTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~ 238 (404)
-+||+|+.|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37999999999999998884
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.72 E-value=0.043 Score=45.38 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
+.|+|..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 68999999999999988764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.58 E-value=0.043 Score=45.56 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 015591 220 TALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g 239 (404)
+.|+|..|+|||||++-+..
T Consensus 5 iv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999998865
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=91.39 E-value=0.044 Score=51.44 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=26.0
Q ss_pred eeeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 213 SLRPGVLTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 213 ~i~~Ge~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.++++.++.+.||.|+||||+.+.|++...
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 347788999999999999999999998543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.21 E-value=0.041 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 015591 218 VLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 218 e~~alvG~sGaGKSTLl~~L~g~ 240 (404)
--+||+|-..+|||||++.|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 34999999999999999999973
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.15 E-value=0.022 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
-+.|+|+.|+|||||++.++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 578999999999999999998654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=0.045 Score=47.53 Aligned_cols=22 Identities=50% Similarity=0.652 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
++.|.|.=|||||||++-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999888753
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.59 E-value=0.063 Score=46.30 Aligned_cols=47 Identities=6% Similarity=0.073 Sum_probs=31.4
Q ss_pred hcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCeEEEEecCCCH
Q 015591 346 VANPSIIFMDEPTTG-LDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392 (404)
Q Consensus 346 ~~~p~iLlLDEPtsg-LD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~ 392 (404)
+.+.++|++|+--.= =+...+..+..++..+.+.|+.+|+++..+..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 446777888875321 23566677777777777777788877776543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.40 E-value=0.079 Score=47.67 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=24.6
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
=+.+-+||..+|+|++|+|||||+.-++
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence 3567889999999999999999977775
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.33 E-value=0.086 Score=44.78 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
+|.=-+||+|.=.+|||||++.|.|..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhh
Confidence 444458999999999999999999853
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.03 E-value=0.061 Score=50.78 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=27.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCH
Q 015591 351 IIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPSI 392 (404)
Q Consensus 351 iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~~ 392 (404)
++++||.-+-.... .+.+.+.+.++.|..++++++.++.
T Consensus 279 ~l~lDE~~~~~~~~---~l~~~l~~~Rk~Gv~~~l~~Qs~~q 317 (433)
T d1e9ra_ 279 WLFIDELASLEKLA---SLADALTKGRKAGLRVVAGLQSTSQ 317 (433)
T ss_dssp EEEESCGGGSCBCS---SHHHHHHHCTTTTEEEEEEESCHHH
T ss_pred EEEechHhhhcccH---HHHHHHHHhCCCCceEEEEeccHHH
Confidence 57899975533321 2556667666679999999998763
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.97 E-value=0.091 Score=48.32 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.5
Q ss_pred eeeeeeeeeeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 015591 206 LLYDVTGSLRPGVLTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 206 iL~~vs~~i~~Ge~~alvG~sGaGKSTLl~~L~g~ 240 (404)
+..-+-...++| ++.+.||+|+|||.|.+.|++.
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 344444555666 5667899999999999999974
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.85 E-value=0.066 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-+||||-.-+|||||++.|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999963
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.83 E-value=0.1 Score=45.31 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=29.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 349 PSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 349 p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
.+++|+||.= .|+..++..+.+.|.+.. .+..+|+++++++
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGG
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCC-CCeEEEEEcCCcc
Confidence 4699999985 477777777766665432 3567888888765
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.78 E-value=0.098 Score=47.88 Aligned_cols=41 Identities=32% Similarity=0.336 Sum_probs=27.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceeeEEEECCcc
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAGRKTTGSMEGEIKIGGYP 256 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 256 (404)
+|.-.+.++||+|+|||.|.+.|+..... ....-+.+|...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~~-~~~~~~~~~~~~ 91 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTE 91 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHHS-SGGGEEEECTTT
T ss_pred CCceEEEEECCCcchHHHHHHHHHHHhcC-CCcceEEEeccc
Confidence 34446789999999999999999974321 112355666543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.65 E-value=0.14 Score=43.73 Aligned_cols=42 Identities=10% Similarity=0.265 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+.+++|+||. -.|...++..+++.|.+.. .+.-+|++|++++
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPE 149 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGG
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChh
Confidence 3679999986 3455666666666665532 3456688888875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.51 E-value=0.11 Score=46.49 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGR 240 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~ 240 (404)
-+.|+||+|.|||+++.-++.+
T Consensus 41 n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999864
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=88.38 E-value=0.1 Score=47.64 Aligned_cols=20 Identities=45% Similarity=0.735 Sum_probs=17.7
Q ss_pred eCCcEEEEEcCCCCcHHHHH
Q 015591 215 RPGVLTALMGVSGAGKTTLL 234 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl 234 (404)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46889999999999999975
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.27 E-value=0.12 Score=43.93 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 015591 220 TALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~g~~ 241 (404)
..|+||+|.|||+++.-|+.+.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=88.00 E-value=0.11 Score=47.64 Aligned_cols=19 Identities=47% Similarity=0.768 Sum_probs=17.1
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 015591 216 PGVLTALMGVSGAGKTTLL 234 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl 234 (404)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4889999999999999974
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.74 E-value=0.13 Score=48.14 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=21.6
Q ss_pred eeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 214 LRPGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+++. +.++||+|+|||-|.|.||...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence 34554 6678999999999999999753
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.68 E-value=0.13 Score=44.35 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCEEE----EeCCCCCCCHHHHHHHHHHHHHHH
Q 015591 338 RLTIAVELVANPSIIF----MDEPTTGLDARAAAIIMRAVKNVV 377 (404)
Q Consensus 338 Rl~IAraL~~~p~iLl----LDEPtsgLD~~~~~~i~~~l~~l~ 377 (404)
.+.++..+ ..+++++ +|.....-|......+.+.+..+.
T Consensus 132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~ 174 (224)
T d1jnya3 132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFM 174 (224)
T ss_dssp HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHhHH
Confidence 45555554 5566776 788777777776666766666653
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=86.76 E-value=0.15 Score=43.28 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 015591 219 LTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g 239 (404)
-+|++|.-.+|||||++.|.+
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 379999999999999998875
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=86.74 E-value=0.24 Score=40.50 Aligned_cols=53 Identities=21% Similarity=0.185 Sum_probs=42.1
Q ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHhcccc
Q 015591 348 NPSIIFMDEPTTGL--DARAAAIIMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDEV 401 (404)
Q Consensus 348 ~p~iLlLDEPtsgL--D~~~~~~i~~~l~~l~~~g~tii~~tH~~~~~i~~~fd~~ 401 (404)
+.+++||||-..++ +-.....++++|++ +..+.-+|+|-+++..++.+.+|.|
T Consensus 94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp~~~evVlTGr~~p~~L~e~ADlV 148 (157)
T d1g5ta_ 94 LLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTV 148 (157)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEE
T ss_pred ccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhccee
Confidence 36899999987744 33456678888875 3468899999999999999999965
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.60 E-value=0.15 Score=46.67 Aligned_cols=19 Identities=53% Similarity=0.807 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 015591 216 PGVLTALMGVSGAGKTTLL 234 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl 234 (404)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6888899999999999996
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=85.90 E-value=0.071 Score=41.29 Aligned_cols=21 Identities=43% Similarity=0.488 Sum_probs=17.8
Q ss_pred eeCCcEEEEEcCCCCcHHHHH
Q 015591 214 LRPGVLTALMGVSGAGKTTLL 234 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKSTLl 234 (404)
+++|+.+.|.+|.|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 467999999999999999544
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.71 E-value=0.13 Score=46.30 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=23.4
Q ss_pred eeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 212 GSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 212 ~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
+.+-+|+..+|+|++|+|||+|+..++
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred ccccCCceEeeccCCCCChHHHHHHHH
Confidence 567889999999999999999986543
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.64 E-value=0.15 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=17.8
Q ss_pred eeeeeeeeeeeeCCcEEEEEcCCCCcHHHHH
Q 015591 204 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLL 234 (404)
Q Consensus 204 ~~iL~~vs~~i~~Ge~~alvG~sGaGKSTLl 234 (404)
+.++++. .| .+.|.|+.||||||.|
T Consensus 17 ~~~v~~~-----~g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTT-----EG-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCC-----SS-CEEEEECTTSCHHHHH
T ss_pred HHHHhCC-----CC-CEEEEecCCccHHHHH
Confidence 3466643 34 3678999999999865
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.41 E-value=0.16 Score=45.82 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=23.9
Q ss_pred eeeeeCCcEEEEEcCCCCcHHHHHHHHh
Q 015591 211 TGSLRPGVLTALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 211 s~~i~~Ge~~alvG~sGaGKSTLl~~L~ 238 (404)
=+.+-+|+..+|+|++|+|||||+.-++
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 3577899999999999999999986444
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=84.58 E-value=0.31 Score=38.94 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=32.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC---------HHHHHhccccc
Q 015591 348 NPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS---------IDIFEAFDEVK 402 (404)
Q Consensus 348 ~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~---------~~i~~~fd~~l 402 (404)
++++++.||.-===| .+.+.+..+.+.|++|++..=|-+ ..++..+|+|.
T Consensus 79 ~~dvI~IDE~QFf~d-----~i~~~~~~~~~~g~~Viv~GLd~Df~~~~F~~~~~Li~~Ad~V~ 137 (139)
T d2b8ta1 79 ETKVIGIDEVQFFDD-----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKIT 137 (139)
T ss_dssp TCCEEEECSGGGSCT-----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEE
T ss_pred CcCEEEechhhhcch-----hHHHHHHHHHhcCceEEEEEeccccccCcCccHHHHHHhhCeEE
Confidence 678999999832113 244455555567999999976533 35666666654
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=84.48 E-value=0.2 Score=44.34 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.4
Q ss_pred EEEEEcCCCCcHHHHH
Q 015591 219 LTALMGVSGAGKTTLL 234 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl 234 (404)
-+.|+|+.||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3678999999999764
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.97 E-value=0.19 Score=46.43 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=38.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 015591 323 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGRTIVCTIHQPS 391 (404)
Q Consensus 323 vg~~~~~~LSgGqrqRl~IAraL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH~~~ 391 (404)
+..||...+++.-..=+ -+.|--+|+.| +..|+-++++..+..+. +++..+|++.....
T Consensus 101 iDtPGh~dF~~ev~~al-----~~~D~allVVd-a~eGv~~qT~~~~~~a~----~~~~p~i~viNKiD 159 (341)
T d1n0ua2 101 IDSPGHVDFSSEVTAAL-----RVTDGALVVVD-TIEGVCVQTETVLRQAL----GERIKPVVVINKVD 159 (341)
T ss_dssp ECCCCCCSSCHHHHHHH-----HTCSEEEEEEE-TTTBSCHHHHHHHHHHH----HTTCEEEEEEECHH
T ss_pred EcCCCcHHHHHHHHHHH-----hhcCceEEEEe-cccCcchhHHHHHHHHH----HcCCCeEEEEECcc
Confidence 44456666777643322 24577788888 88999999877665543 35666666665544
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=83.95 E-value=0.27 Score=42.41 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 015591 220 TALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~ 238 (404)
++++|.-.+|||||++.|.
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999995
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.92 E-value=0.23 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.++|=|+=||||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 37888999999999999998654
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=83.64 E-value=0.21 Score=38.99 Aligned_cols=37 Identities=22% Similarity=0.101 Sum_probs=25.0
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 015591 344 ELVANPSIIFMDEPTTGLDARAAAIIMRAVKNVVDTGR 381 (404)
Q Consensus 344 aL~~~p~iLlLDEPtsgLD~~~~~~i~~~l~~l~~~g~ 381 (404)
....+-+++|+||-= .+|..+...+...++.+...+.
T Consensus 90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~~~~~ 126 (136)
T d1a1va1 90 CSGGAYDIIICDECH-STDATSILGIGTVLDQAETAGA 126 (136)
T ss_dssp GGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHTTTTTC
T ss_pred hhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHHHHCCC
Confidence 345678999999995 4688776666666665543333
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.09 E-value=0.29 Score=42.69 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 015591 220 TALMGVSGAGKTTLLDVLA 238 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L~ 238 (404)
++++|+-++|||||+.-|.
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7999999999999998774
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=82.88 E-value=0.17 Score=44.86 Aligned_cols=19 Identities=42% Similarity=0.420 Sum_probs=17.3
Q ss_pred eeCCcEEEEEcCCCCcHHH
Q 015591 214 LRPGVLTALMGVSGAGKTT 232 (404)
Q Consensus 214 i~~Ge~~alvG~sGaGKST 232 (404)
+++|+.+.|.+|+|||||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 4689999999999999997
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.31 E-value=0.24 Score=43.39 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHH
Q 015591 220 TALMGVSGAGKTTLLDVL 237 (404)
Q Consensus 220 ~alvG~sGaGKSTLl~~L 237 (404)
++++|+-++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHH
Confidence 799999999999999988
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.93 E-value=0.38 Score=44.21 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.+.|=|+=|+||||+++.|+....
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 467789999999999999997544
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.58 E-value=0.45 Score=42.11 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 015591 216 PGVLTALMGVSGAGKTTLLDVLAGRK 241 (404)
Q Consensus 216 ~Ge~~alvG~sGaGKSTLl~~L~g~~ 241 (404)
.+-.++++|-.-+|||||+|.|.|..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEEecCccchhhhhhhhhccc
Confidence 34458999999999999999999954
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.07 E-value=0.46 Score=37.05 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 015591 215 RPGVLTALMGVSGAGKTTLLDVLAG 239 (404)
Q Consensus 215 ~~Ge~~alvG~sGaGKSTLl~~L~g 239 (404)
++|=.+-+.|-+|||||||.+.|.-
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHH
Confidence 4677888999999999999999854
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=80.39 E-value=0.45 Score=44.09 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.9
Q ss_pred CcEEEEEcCCCCcHHHHHH
Q 015591 217 GVLTALMGVSGAGKTTLLD 235 (404)
Q Consensus 217 Ge~~alvG~sGaGKSTLl~ 235 (404)
+.++.|.||.|+||||++.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCeEEEEcCCCCCceehHH
Confidence 5699999999999999874
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=80.03 E-value=0.32 Score=44.65 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 015591 219 LTALMGVSGAGKTTLLDVLAGRKT 242 (404)
Q Consensus 219 ~~alvG~sGaGKSTLl~~L~g~~~ 242 (404)
.++|=|+=||||||+++.|+....
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 378889999999999999987543
|