Citrus Sinensis ID: 015613
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 403 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AQ6 | 373 | NAD-dependent protein dea | yes | no | 0.923 | 0.997 | 0.728 | 1e-162 | |
| Q1JQC6 | 315 | NAD-dependent protein dea | yes | no | 0.684 | 0.876 | 0.450 | 4e-69 | |
| Q8R216 | 333 | NAD-dependent protein dea | yes | no | 0.684 | 0.828 | 0.457 | 6e-69 | |
| Q9Y6E7 | 314 | NAD-dependent protein dea | yes | no | 0.684 | 0.878 | 0.461 | 2e-68 | |
| Q8IRR5 | 312 | NAD-dependent protein dea | yes | no | 0.697 | 0.900 | 0.45 | 5e-65 | |
| Q8PQK3 | 293 | NAD-dependent protein dea | yes | no | 0.662 | 0.911 | 0.436 | 7e-59 | |
| Q8PDM9 | 293 | NAD-dependent protein dea | yes | no | 0.640 | 0.880 | 0.442 | 8e-59 | |
| Q4UZX0 | 293 | NAD-dependent protein dea | yes | no | 0.640 | 0.880 | 0.442 | 8e-59 | |
| Q89EA6 | 273 | NAD-dependent protein dea | yes | no | 0.650 | 0.959 | 0.442 | 1e-58 | |
| F4P804 | 305 | NAD-dependent protein dea | N/A | no | 0.637 | 0.842 | 0.444 | 1e-58 |
| >sp|Q94AQ6|SIR4_ARATH NAD-dependent protein deacetylase SRT2 OS=Arabidopsis thaliana GN=SRT2 PE=2 SV=1 | Back alignment and function desciption |
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Score = 571 bits (1471), Expect = e-162, Method: Compositional matrix adjust.
Identities = 273/375 (72%), Positives = 320/375 (85%), Gaps = 3/375 (0%)
Query: 29 NSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKA 88
N + V +++ S + L S G V +G +FV+T+ R+SIPG S +E KA
Sbjct: 2 NMRRVFGGVSTDLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNESKA 60
Query: 89 PASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGA 148
P P+ LRD+K VPDADPP++EDI++LY+ F+ S++L +LTGAG+STECGIPDYRSPNGA
Sbjct: 61 P--PRFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPNGA 118
Query: 149 YSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMIT 208
YSSGFKPITHQ+F RSSRARRRYWARSYAGWRRF AAQP PAH ALASLEKAGRI+ MIT
Sbjct: 119 YSSGFKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFMIT 178
Query: 209 QNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268
QNVDRLHHRAGS+PLELHGTVYTV+CL+CGFSF RDLFQDQ+KA+NPKWAEAIES+D+G
Sbjct: 179 QNVDRLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDHGD 238
Query: 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAM 328
PGS++SFGMKQRPDGDIEIDEKFWEE FHIP C+KC GVLKPDV+FFGDN+PK+RA +AM
Sbjct: 239 PGSEKSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDVIFFGDNIPKERATQAM 298
Query: 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEI 388
E AK+ DAFLVLGSSLMTMSA+RL RAAHEAG+ AIVN+GETRADD+ LKI+AR+GEI
Sbjct: 299 EVAKQSDAFLVLGSSLMTMSAFRLCRAAHEAGAMTAIVNIGETRADDIVPLKINARVGEI 358
Query: 389 LPRVLDVGSLSIPAL 403
L RVLDVGSLS+PAL
Sbjct: 359 LHRVLDVGSLSVPAL 373
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NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form (By similarity). Negatively regulates plant basal defense against plant pathogens, possibly by suppressing salicylic acid biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: - |
| >sp|Q1JQC6|SIR4_BOVIN NAD-dependent protein deacetylase sirtuin-4 OS=Bos taurus GN=SIRT4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8R216|SIR4_MOUSE NAD-dependent protein deacetylase sirtuin-4 OS=Mus musculus GN=Sirt4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9Y6E7|SIR4_HUMAN NAD-dependent protein deacetylase sirtuin-4 OS=Homo sapiens GN=SIRT4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8IRR5|SIR4_DROME NAD-dependent protein deacetylase Sirt4 OS=Drosophila melanogaster GN=Sirt4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8PQK3|NPD_XANAC NAD-dependent protein deacetylase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=cobB PE=3 SV=2 | Back alignment and function description |
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| >sp|Q8PDM9|NPD_XANCP NAD-dependent protein deacetylase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=cobB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q4UZX0|NPD_XANC8 NAD-dependent protein deacetylase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=cobB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q89EA6|NPD2_BRAJA NAD-dependent protein deacetylase 2 OS=Bradyrhizobium japonicum (strain USDA 110) GN=cobB2 PE=3 SV=2 | Back alignment and function description |
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| >sp|F4P804|SIR4_BATDJ NAD-dependent protein deacetylase SIR4 OS=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) GN=BATDEDRAFT_20316 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 403 | ||||||
| 145334337 | 376 | sirtuin 2 [Arabidopsis thaliana] gi|3320 | 0.928 | 0.994 | 0.726 | 1e-160 | |
| 297806957 | 356 | hypothetical protein ARALYDRAFT_350148 [ | 0.866 | 0.980 | 0.774 | 1e-160 | |
| 18415923 | 373 | sirtuin 2 [Arabidopsis thaliana] gi|3068 | 0.923 | 0.997 | 0.728 | 1e-160 | |
| 42573313 | 354 | sirtuin 2 [Arabidopsis thaliana] gi|2224 | 0.868 | 0.988 | 0.764 | 1e-160 | |
| 224081046 | 352 | histone deacetylase [Populus trichocarpa | 0.868 | 0.994 | 0.793 | 1e-159 | |
| 449459214 | 387 | PREDICTED: NAD-dependent protein deacety | 0.950 | 0.989 | 0.710 | 1e-159 | |
| 9955510 | 451 | SIR2-family protein [Arabidopsis thalian | 0.868 | 0.776 | 0.760 | 1e-158 | |
| 255550570 | 365 | chromatin regulatory protein sir2, putat | 0.833 | 0.920 | 0.777 | 1e-158 | |
| 356507447 | 393 | PREDICTED: NAD-dependent ADP-ribosyltran | 0.910 | 0.933 | 0.731 | 1e-157 | |
| 359466801 | 382 | sirtuin 2 [Vitis vinifera] | 0.925 | 0.976 | 0.731 | 1e-156 |
| >gi|145334337|ref|NP_001078550.1| sirtuin 2 [Arabidopsis thaliana] gi|332003977|gb|AED91360.1| sirtuin 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/377 (72%), Positives = 321/377 (85%), Gaps = 3/377 (0%)
Query: 27 SRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHED 86
S N + V +++ S + L S G V +G +FV+T+ R+SIPG S +E
Sbjct: 3 SMNMRRVFGGVSTDLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNES 61
Query: 87 KAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN 146
KAP P+ LRD+K VPDADPP++EDI++LY+ F+ S++L +LTGAG+STECGIPDYRSPN
Sbjct: 62 KAP--PRFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPN 119
Query: 147 GAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCM 206
GAYSSGFKPITHQ+F RSSRARRRYWARSYAGWRRF AAQP PAH ALASLEKAGRI+ M
Sbjct: 120 GAYSSGFKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFM 179
Query: 207 ITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDY 266
ITQNVDRLHHRAGS+PLELHGTVYTV+CL+CGFSF RDLFQDQ+KA+NPKWAEAIES+D+
Sbjct: 180 ITQNVDRLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDH 239
Query: 267 GSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADK 326
G PGS++SFGMKQRPDGDIEIDEKFWEE FHIP C+KC GVLKPDV+FFGDN+PK+RA +
Sbjct: 240 GDPGSEKSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDVIFFGDNIPKERATQ 299
Query: 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLG 386
AME AK+ DAFLVLGSSLMTMSA+RL RAAHEAG+ AIVN+GETRADD+ LKI+AR+G
Sbjct: 300 AMEVAKQSDAFLVLGSSLMTMSAFRLCRAAHEAGAMTAIVNIGETRADDIVPLKINARVG 359
Query: 387 EILPRVLDVGSLSIPAL 403
EIL RVLDVGSLS+PAL
Sbjct: 360 EILHRVLDVGSLSVPAL 376
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806957|ref|XP_002871362.1| hypothetical protein ARALYDRAFT_350148 [Arabidopsis lyrata subsp. lyrata] gi|297317199|gb|EFH47621.1| hypothetical protein ARALYDRAFT_350148 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18415923|ref|NP_568207.1| sirtuin 2 [Arabidopsis thaliana] gi|30682583|ref|NP_850795.1| sirtuin 2 [Arabidopsis thaliana] gi|75249793|sp|Q94AQ6.1|SIR4_ARATH RecName: Full=NAD-dependent protein deacetylase SRT2; AltName: Full=Regulatory protein SIR2 homolog 2; Flags: Precursor gi|15028033|gb|AAK76547.1| putative SIR2-family protein [Arabidopsis thaliana] gi|21689769|gb|AAM67528.1| putative SIR2-family protein [Arabidopsis thaliana] gi|332003972|gb|AED91355.1| sirtuin 2 [Arabidopsis thaliana] gi|332003973|gb|AED91356.1| sirtuin 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|42573313|ref|NP_974753.1| sirtuin 2 [Arabidopsis thaliana] gi|222423276|dbj|BAH19614.1| AT5G09230 [Arabidopsis thaliana] gi|332003975|gb|AED91358.1| sirtuin 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|224081046|ref|XP_002306275.1| histone deacetylase [Populus trichocarpa] gi|222855724|gb|EEE93271.1| histone deacetylase [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449459214|ref|XP_004147341.1| PREDICTED: NAD-dependent protein deacetylase SRT2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|9955510|emb|CAC05449.1| SIR2-family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255550570|ref|XP_002516335.1| chromatin regulatory protein sir2, putative [Ricinus communis] gi|223544565|gb|EEF46082.1| chromatin regulatory protein sir2, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356507447|ref|XP_003522478.1| PREDICTED: NAD-dependent ADP-ribosyltransferase sirtuin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|359466801|gb|AEV46831.1| sirtuin 2 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 403 | ||||||
| TAIR|locus:2184717 | 373 | SRT2 "AT5G09230" [Arabidopsis | 0.923 | 0.997 | 0.677 | 4.7e-135 | |
| RGD|1310413 | 311 | Sirt4 "sirtuin 4" [Rattus norv | 0.684 | 0.887 | 0.423 | 4.2e-56 | |
| MGI|MGI:1922637 | 333 | Sirt4 "sirtuin 4 (silent matin | 0.684 | 0.828 | 0.423 | 1.1e-55 | |
| UNIPROTKB|Q1JQC6 | 315 | SIRT4 "NAD-dependent protein d | 0.684 | 0.876 | 0.420 | 1.4e-55 | |
| UNIPROTKB|F1PU57 | 312 | SIRT4 "NAD-dependent protein d | 0.684 | 0.884 | 0.427 | 1.4e-55 | |
| FB|FBgn0029783 | 312 | Sirt4 "Sirt4" [Drosophila mela | 0.689 | 0.891 | 0.420 | 2.3e-55 | |
| UNIPROTKB|Q9Y6E7 | 314 | SIRT4 "NAD-dependent protein d | 0.684 | 0.878 | 0.430 | 6.1e-55 | |
| UNIPROTKB|F1RJK2 | 314 | SIRT4 "NAD-dependent protein d | 0.684 | 0.878 | 0.410 | 1.5e-53 | |
| UNIPROTKB|F1NB70 | 294 | SIRT4 "Uncharacterized protein | 0.684 | 0.938 | 0.410 | 1.7e-52 | |
| ZFIN|ZDB-GENE-041010-65 | 310 | zgc:103539 "zgc:103539" [Danio | 0.692 | 0.9 | 0.402 | 8.5e-49 |
| TAIR|locus:2184717 SRT2 "AT5G09230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
Identities = 254/375 (67%), Positives = 301/375 (80%)
Query: 29 NSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKA 88
N + V +++ S + L S G V +G +FV+T+ R+SIPG S +E KA
Sbjct: 2 NMRRVFGGVSTDLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNESKA 60
Query: 89 PASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGA 148
P P+ LRD+K VPDADPP++EDI++LY+ F+ S++L +LTGAG+STECGIPDYRSPNGA
Sbjct: 61 P--PRFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPNGA 118
Query: 149 YSSGFKPITHQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMIT 208
YSSGFKPITHQ+F F AAQP PAH ALASLEKAGRI+ MIT
Sbjct: 119 YSSGFKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFMIT 178
Query: 209 QNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268
QNVDRLHHRAGS+PLELHGTVYTV+CL+CGFSF RDLFQDQ+KA+NPKWAEAIES+D+G
Sbjct: 179 QNVDRLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDHGD 238
Query: 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAM 328
PGS++SFGMKQRPDGDIEIDEKFWEE FHIP C+KC GVLKPDV+FFGDN+PK+RA +AM
Sbjct: 239 PGSEKSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDVIFFGDNIPKERATQAM 298
Query: 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEI 388
E AK+ DAFLVLGSSLMTMSA+RL RAAHEAG+ AIVN+GETRADD+ LKI+AR+GEI
Sbjct: 299 EVAKQSDAFLVLGSSLMTMSAFRLCRAAHEAGAMTAIVNIGETRADDIVPLKINARVGEI 358
Query: 389 LPRVLDVGSLSIPAL 403
L RVLDVGSLS+PAL
Sbjct: 359 LHRVLDVGSLSVPAL 373
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| RGD|1310413 Sirt4 "sirtuin 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1922637 Sirt4 "sirtuin 4 (silent mating type information regulation 2 homolog) 4 (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q1JQC6 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PU57 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| FB|FBgn0029783 Sirt4 "Sirt4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y6E7 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RJK2 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NB70 SIRT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-041010-65 zgc:103539 "zgc:103539" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AQ6 | SIR4_ARATH | 3, ., 5, ., 1, ., - | 0.728 | 0.9230 | 0.9973 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.5.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh1_pg.C_scaffold_6000741 | annotation not avaliable (356 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
 | scaffold_700814.1 | • | 0.488 | ||||||||
 | scaffold_201685.1 | • | 0.448 | ||||||||
 | fgenesh2_kg.1__860__AT1G08460.1 | • | 0.408 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 403 | |||
| cd01409 | 260 | cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic | 1e-146 | |
| PRK05333 | 285 | PRK05333, PRK05333, NAD-dependent deacetylase; Pro | 1e-103 | |
| cd01407 | 218 | cd01407, SIR2-fam, SIR2 family of proteins include | 6e-84 | |
| cd00296 | 222 | cd00296, SIR2, SIR2 superfamily of proteins includ | 1e-71 | |
| COG0846 | 250 | COG0846, SIR2, NAD-dependent protein deacetylases, | 4e-67 | |
| PRK00481 | 242 | PRK00481, PRK00481, NAD-dependent deacetylase; Pro | 2e-62 | |
| cd01413 | 222 | cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryo | 2e-62 | |
| PRK14138 | 244 | PRK14138, PRK14138, NAD-dependent deacetylase; Pro | 8e-52 | |
| cd01412 | 224 | cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryoti | 9e-51 | |
| pfam02146 | 177 | pfam02146, SIR2, Sir2 family | 6e-49 | |
| cd01410 | 206 | cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic | 2e-48 | |
| cd01411 | 225 | cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic | 1e-33 | |
| PTZ00409 | 271 | PTZ00409, PTZ00409, Sir2 (Silent Information Regul | 2e-28 | |
| cd01408 | 235 | cd01408, SIRT1, SIRT1: Eukaryotic group (class1) w | 5e-28 | |
| PTZ00408 | 242 | PTZ00408, PTZ00408, NAD-dependent deacetylase; Pro | 2e-21 | |
| PTZ00410 | 349 | PTZ00410, PTZ00410, NAD-dependent SIR2; Provisiona | 4e-16 |
| >gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
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Score = 414 bits (1065), Expect = e-146
Identities = 157/276 (56%), Positives = 185/276 (67%), Gaps = 17/276 (6%)
Query: 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWAR 174
L F S +L+VLTGAGISTE GIPDYRS G YS F+P+THQ+F+RS AR+RYWAR
Sbjct: 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWAR 60
Query: 175 SYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVV 233
S+ GW RF AAQPN AH ALA+LE AGR+ +ITQNVD LH +AGS N +ELHG+++ VV
Sbjct: 61 SFVGWPRFSAAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVV 120
Query: 234 CLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWE 293
CL CGF R QD+++ALNP +AE Q PDGD E
Sbjct: 121 CLSCGFRTPRAELQDRLEALNPGFAEQAAG---------------QAPDGD-VDLEDEQV 164
Query: 294 EDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLV 353
F +P C++C GVLKPDVVFFG+NVP+DR A E DA LVLGSSLM S YR V
Sbjct: 165 AGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFV 224
Query: 354 RAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 389
AA EAG IAIVN+G TRAD L TLK+ AR GE+L
Sbjct: 225 LAAAEAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260
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Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. Length = 260 |
| >gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
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| >gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
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| >gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
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| >gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E | Back alignment and domain information |
|---|
| >gnl|CDD|216902 pfam02146, SIR2, Sir2 family | Back alignment and domain information |
|---|
| >gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 403 | |||
| KOG2683 | 305 | consensus Sirtuin 4 and related class II sirtuins | 100.0 | |
| cd01409 | 260 | SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla | 100.0 | |
| PRK05333 | 285 | NAD-dependent deacetylase; Provisional | 100.0 | |
| PRK14138 | 244 | NAD-dependent deacetylase; Provisional | 100.0 | |
| COG0846 | 250 | SIR2 NAD-dependent protein deacetylases, SIR2 fami | 100.0 | |
| PTZ00409 | 271 | Sir2 (Silent Information Regulator) protein; Provi | 100.0 | |
| PRK00481 | 242 | NAD-dependent deacetylase; Provisional | 100.0 | |
| cd01413 | 222 | SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group | 100.0 | |
| cd01408 | 235 | SIRT1 SIRT1: Eukaryotic group (class1) which inclu | 100.0 | |
| cd01411 | 225 | SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homo | 100.0 | |
| PTZ00408 | 242 | NAD-dependent deacetylase; Provisional | 100.0 | |
| cd01410 | 206 | SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla | 100.0 | |
| cd01412 | 224 | SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea | 100.0 | |
| cd01407 | 218 | SIR2-fam SIR2 family of proteins includes silent i | 100.0 | |
| PTZ00410 | 349 | NAD-dependent SIR2; Provisional | 100.0 | |
| KOG2684 | 412 | consensus Sirtuin 5 and related class III sirtuins | 100.0 | |
| cd00296 | 222 | SIR2 SIR2 superfamily of proteins includes silent | 100.0 | |
| PF02146 | 178 | SIR2: Sir2 family; InterPro: IPR003000 These seque | 100.0 | |
| KOG2682 | 314 | consensus NAD-dependent histone deacetylases and c | 100.0 | |
| KOG1905 | 353 | consensus Class IV sirtuins (SIR2 family) [Chromat | 100.0 | |
| cd01406 | 242 | SIR2-like Sir2-like: Prokaryotic group of uncharac | 98.83 | |
| PF00205 | 137 | TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr | 95.99 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 94.07 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.52 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 93.43 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 93.29 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 93.16 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.07 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 92.82 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 92.57 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 92.5 | |
| PLN02470 | 585 | acetolactate synthase | 92.43 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 92.3 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 92.28 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 92.26 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 92.21 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 92.14 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 92.13 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 92.05 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 92.05 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 92.03 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 91.83 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 91.53 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 91.51 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 91.5 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 91.48 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 91.35 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 91.33 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 91.31 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 91.14 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 91.01 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 90.99 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 90.95 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 90.86 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 90.85 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 90.74 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 90.33 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 90.33 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 90.12 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 89.94 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 89.93 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 89.61 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 89.55 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 88.58 | |
| smart00834 | 41 | CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C | 88.24 | |
| PF07295 | 146 | DUF1451: Protein of unknown function (DUF1451); In | 88.0 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 87.92 | |
| PF04574 | 153 | DUF592: Protein of unknown function (DUF592); Inte | 87.2 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 87.18 | |
| PRK11032 | 160 | hypothetical protein; Provisional | 86.87 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 86.43 | |
| cd02766 | 501 | MopB_3 The MopB_3 CD includes a group of related u | 85.75 | |
| PLN02573 | 578 | pyruvate decarboxylase | 85.72 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 84.47 | |
| PF09723 | 42 | Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134 | 84.31 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 83.45 | |
| cd02750 | 461 | MopB_Nitrate-R-NarG-like Respiratory nitrate reduc | 82.74 | |
| TIGR02605 | 52 | CxxC_CxxC_SSSS putative regulatory protein, FmdB f | 82.7 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 82.61 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 82.4 | |
| cd02765 | 567 | MopB_4 The MopB_4 CD includes a group of related u | 82.12 | |
| COG3383 | 978 | Uncharacterized anaerobic dehydrogenase [General f | 81.41 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 81.26 | |
| cd02759 | 477 | MopB_Acetylene-hydratase The MopB_Acetylene-hydrat | 80.11 |
| >KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=537.50 Aligned_cols=297 Identities=60% Similarity=1.014 Sum_probs=283.5
Q ss_pred CCCCCCcCCCCchhcccCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCC-Cccc-CCCCCcCh
Q 015613 81 SSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN-GAYS-SGFKPITH 158 (403)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~-Gly~-~~~~p~~~ 158 (403)
+++|+.+.+ .+.+..++.+|+++++.++++.+|..+|..+++++|+|||||||+||||||||++ |+|. ..++|+.+
T Consensus 6 ~l~~~s~~p--~s~~~~~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~h 83 (305)
T KOG2683|consen 6 SLGNESKAP--PSFLMARKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQH 83 (305)
T ss_pred ccccCCCCC--chhhhhccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchH
Confidence 688888877 7777888999999999999999999999999999999999999999999999999 9998 57899999
Q ss_pred HHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCC
Q 015613 159 QQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 237 (403)
Q Consensus 159 ~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C 237 (403)
++|.++...+++||+|.|.+|++|..++||++|++|+.||+.|+++++||||||+||.|||++. .|+||+.+.+.|.+|
T Consensus 84 qdf~rSs~~RqRYWaRnf~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C 163 (305)
T KOG2683|consen 84 QDFVRSSRCRQRYWARNFVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSC 163 (305)
T ss_pred HHHhhhhHHHHHHHHHhhcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCC
Q 015613 238 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGD 317 (403)
Q Consensus 238 ~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE 317 (403)
++..+|+.+|++|..+||.|.++....+ +++||+|++++.++ +..+.+|.|++|||.|||+|+||||
T Consensus 164 ~y~~~R~~~Qdrl~~~NP~fke~~~~~~------------~~~pDgDv~lpl~~-e~gF~IPeC~~CgG~lKpdV~fFGd 230 (305)
T KOG2683|consen 164 GYIEPRQTFQDRLKYLNPGFKEAIVSPG------------HQRPDGDVELPLEF-EEGFQIPECEKCGGLLKPDVTFFGD 230 (305)
T ss_pred CcccchHHHHHHHHhcCcchhhhccCcc------------ccCCCCCeecchhh-hhcccCCcccccCCccCCceEEecC
Confidence 9999999999999999999998764322 48899999999986 7789999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHH
Q 015613 318 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRV 392 (403)
Q Consensus 318 ~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L 392 (403)
+++.+..+.+.+.+++||-+||+||||+|++.++++.+++..+.++.|||+++|+.|+.+.++|+.+|+|||+++
T Consensus 231 nvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~~ 305 (305)
T KOG2683|consen 231 NVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKEM 305 (305)
T ss_pred CCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864
|
|
| >cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PRK05333 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >PRK14138 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription] | Back alignment and domain information |
|---|
| >PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional | Back alignment and domain information |
|---|
| >PRK00481 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PTZ00408 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E | Back alignment and domain information |
|---|
| >cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
|---|
| >PTZ00410 NAD-dependent SIR2; Provisional | Back alignment and domain information |
|---|
| >KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
|---|
| >PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases | Back alignment and domain information |
|---|
| >KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >smart00834 CxxC_CXXC_SSSS Putative regulatory protein | Back alignment and domain information |
|---|
| >PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length | Back alignment and domain information |
|---|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
| >PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues | Back alignment and domain information |
|---|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
| >PRK11032 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site | Back alignment and domain information |
|---|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria | Back alignment and domain information |
|---|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
| >cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins | Back alignment and domain information |
|---|
| >TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family | Back alignment and domain information |
|---|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
| >cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site | Back alignment and domain information |
|---|
| >COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
| >cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 403 | ||||
| 1ma3_A | 253 | Structure Of A Sir2 Enzyme Bound To An Acetylated P | 7e-37 | ||
| 1yc5_A | 246 | Sir2-P53 Peptide-Nicotinamide Length = 246 | 5e-35 | ||
| 2h4h_A | 246 | Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 | 2e-34 | ||
| 2h59_A | 246 | Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp | 6e-34 | ||
| 1m2g_A | 249 | Sir2 Homologue-Adp Ribose Complex Length = 249 | 4e-27 | ||
| 1ici_A | 256 | Crystal Structure Of A Sir2 Homolog-Nad Complex Len | 5e-27 | ||
| 1m2h_A | 249 | Sir2 Homologue S24a Mutant-adp Ribose Complex Lengt | 1e-26 | ||
| 1m2j_A | 249 | Sir2 Homologue H80n Mutant-Adp Ribose Complex Lengt | 3e-26 | ||
| 1m2k_A | 249 | Sir2 Homologue F159a Mutant-Adp Ribose Complex Leng | 4e-26 | ||
| 1m2n_A | 249 | Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acety | 1e-25 | ||
| 3pki_A | 355 | Human Sirt6 Crystal Structure In Complex With Adp R | 1e-20 | ||
| 3k35_A | 318 | Crystal Structure Of Human Sirt6 Length = 318 | 2e-20 | ||
| 4g1c_A | 267 | Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length | 1e-18 | ||
| 3rig_A | 273 | Sirt5 Is An Nad-Dependent Protein Lysine Demalonyla | 1e-18 | ||
| 2nyr_A | 271 | Crystal Structure Of Human Sirtuin Homolog 5 In Com | 1e-18 | ||
| 4hda_A | 275 | Crystal Structure Of Human Sirt5 In Complex With Fl | 1e-18 | ||
| 2b4y_A | 271 | Crystal Structure Of Human Sirtuin Homolog 5 Length | 2e-18 | ||
| 3u31_A | 290 | Plasmodium Falciparum Sir2a Preferentially Hydrolyz | 1e-17 | ||
| 3jwp_A | 265 | Crystal Structure Of Plasmodium Falciparum Sir2a (P | 1e-16 | ||
| 4iao_A | 492 | Crystal Structure Of Sir2 C543s Mutant In Complex W | 5e-14 | ||
| 2hjh_A | 354 | Crystal Structure Of The Sir2 Deacetylase Length = | 1e-13 | ||
| 4i5i_A | 287 | Crystal Structure Of The Sirt1 Catalytic Domain Bou | 7e-13 | ||
| 4fvt_A | 274 | Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad L | 9e-13 | ||
| 3glr_A | 285 | Crystal Structure Of Human Sirt3 With Acetyl-Lysine | 1e-12 | ||
| 4hd8_A | 284 | Crystal Structure Of Human Sirt3 In Complex With Fl | 1e-12 | ||
| 1j8f_A | 323 | Human Sirt2 Histone Deacetylase Length = 323 | 3e-11 | ||
| 1j8f_C | 323 | Human Sirt2 Histone Deacetylase Length = 323 | 4e-11 | ||
| 1s5p_A | 235 | Structure And Substrate Binding Properties Of Cobb, | 1e-09 | ||
| 2od7_A | 308 | Crystal Structure Of Yhst2 Bound To The Intermediat | 2e-08 | ||
| 1szc_A | 297 | Structural Basis For Nicotinamide Cleavage And Adp- | 2e-08 | ||
| 1q1a_A | 289 | Structure Of The Yeast Hst2 Protein Deacetylase In | 2e-08 | ||
| 1q17_A | 300 | Structure Of The Yeast Hst2 Protein Deacetylase In | 2e-08 | ||
| 1q14_A | 361 | Structure And Autoregulation Of The Yeast Hst2 Homo | 3e-08 | ||
| 2od2_A | 308 | Crystal Structure Of Yhst2 I117f Mutant Bound To Ca | 5e-08 |
| >pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53 Peptide Length = 253 | Back alignment and structure |
|
| >pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide Length = 246 | Back alignment and structure |
| >pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 | Back alignment and structure |
| >pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose Length = 246 | Back alignment and structure |
| >pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex Length = 256 | Back alignment and structure |
| >pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose Length = 355 | Back alignment and structure |
| >pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6 Length = 318 | Back alignment and structure |
| >pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length = 267 | Back alignment and structure |
| >pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And Desuccinylase Length = 273 | Back alignment and structure |
| >pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex With Suramin Length = 271 | Back alignment and structure |
| >pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With Fluor-de-lys Peptide And Resveratrol Length = 275 | Back alignment and structure |
| >pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 Length = 271 | Back alignment and structure |
| >pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes Medium And Long Chain Fatty Acyl Lysine Length = 290 | Back alignment and structure |
| >pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a (Pf13_0152) In Complex With Amp Length = 265 | Back alignment and structure |
| >pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid Domain Of Sir4 Length = 492 | Back alignment and structure |
| >pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase Length = 354 | Back alignment and structure |
| >pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To Nad And An Ex527 Analog Length = 287 | Back alignment and structure |
| >pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad Length = 274 | Back alignment and structure |
| >pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2 Peptide Length = 285 | Back alignment and structure |
| >pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With Fluor-de-lys Peptide And Piceatannol Length = 284 | Back alignment and structure |
| >pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase Length = 323 | Back alignment and structure |
| >pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase Length = 323 | Back alignment and structure |
| >pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2 Homolog Protein Deacetylase From Eschericia Coli Length = 235 | Back alignment and structure |
| >pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate Analogue Adp-Hpd, And And Aceylated H4 Peptide Length = 308 | Back alignment and structure |
| >pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose Transfer By Nad+-Dependent Sir2 HistonePROTEIN DEACETYLASES Length = 297 | Back alignment and structure |
| >pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 289 | Back alignment and structure |
| >pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 300 | Back alignment and structure |
| >pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of Sir2 Length = 361 | Back alignment and structure |
| >pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To Carba-Nad+ And An Acetylated H4 Peptide Length = 308 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB: 3rig_A* 2b4y_A* 2nyr_A* Length = 273 | Back alignment and structure |
|---|
Score = 324 bits (833), Expect = e-110
Identities = 71/295 (24%), Positives = 117/295 (39%), Gaps = 35/295 (11%)
Query: 106 PPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSS 165
PS + +FF + +++++GAG+S E G+P +R G + ++ + +
Sbjct: 6 RPS-SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWR-KWQAQDLATPLAFA 63
Query: 166 RARRRYWARSYAGWRRFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS- 220
R W + + +PN H A+A E K GR +ITQN+D LH +AG+
Sbjct: 64 HNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTK 123
Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQR 280
N LE+HG+++ C CG +P K
Sbjct: 124 NLLEIHGSLFKTRCTSCGVVAEN--------YKSPICPA---------------LSGKGA 160
Query: 281 PDGDIEIDEKFWEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFL 338
P+ + +P C++ C G+L+P VV+FG+N+ ++ CD L
Sbjct: 161 PEPGTQDAS---IPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCL 217
Query: 339 VLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 393
V+G+S + A G +A N T A + G LP L
Sbjct: 218 VVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272
|
| >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Length = 246 | Back alignment and structure |
|---|
| >3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Length = 290 | Back alignment and structure |
|---|
| >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Length = 253 | Back alignment and structure |
|---|
| >3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
| >3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Length = 355 | Back alignment and structure |
|---|
| >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Length = 354 | Back alignment and structure |
|---|
| >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Length = 249 | Back alignment and structure |
|---|
| >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Length = 235 | Back alignment and structure |
|---|
| >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A Length = 285 | Back alignment and structure |
|---|
| >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Length = 289 | Back alignment and structure |
|---|
| >1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Length = 323 | Back alignment and structure |
|---|
| >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Length = 361 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 403 | |||
| 1yc5_A | 246 | NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, | 100.0 | |
| 1ma3_A | 253 | SIR2-AF2, transcriptional regulatory protein, SIR2 | 100.0 | |
| 3riy_A | 273 | NAD-dependent deacetylase sirtuin-5; desuccinylase | 100.0 | |
| 1m2k_A | 249 | Silent information regulator 2; protein-ligand com | 100.0 | |
| 3u31_A | 290 | SIR2A, transcriptional regulatory protein SIR2 hom | 100.0 | |
| 1q1a_A | 289 | HST2 protein; ternary complex, histone deacetylase | 100.0 | |
| 2hjh_A | 354 | NAD-dependent histone deacetylase SIR2; protein, s | 100.0 | |
| 4iao_A | 492 | NAD-dependent histone deacetylase SIR2; protein co | 100.0 | |
| 3glr_A | 285 | NAD-dependent deacetylase sirtuin-3, mitochondria; | 100.0 | |
| 1s5p_A | 235 | NAD-dependent deacetylase; protein deacetylase, SI | 100.0 | |
| 3k35_A | 318 | NAD-dependent deacetylase sirtuin-6; rossmann fold | 100.0 | |
| 1q14_A | 361 | HST2 protein; histone deacetylase, hydrolase; 2.50 | 100.0 | |
| 1j8f_A | 323 | SIRT2, sirtuin 2, isoform 1, silencing INFO; gene | 100.0 | |
| 3pki_A | 355 | NAD-dependent deacetylase sirtuin-6; ADP ribose, s | 100.0 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 91.99 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 91.09 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 90.8 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 90.49 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 90.38 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 90.27 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 89.81 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 89.77 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 89.43 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 88.97 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 88.56 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 88.24 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 86.86 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 83.92 | |
| 1o97_D | 320 | Electron transferring flavoprotein alpha-subunit; | 83.45 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 81.08 |
| >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-64 Score=482.65 Aligned_cols=241 Identities=37% Similarity=0.661 Sum_probs=209.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCC--CcChHHHhhChhHHHHHHHHHHhhhhccccCCCCH
Q 015613 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (403)
Q Consensus 112 l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~--p~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~ 189 (403)
+++++++|++|++|||+|||||||+||||||||++|+|.. |. .++.+.|..+|..+|.||.+.+. .+.+++||.
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~-~~~~~~~~~~f~~~p~~~~~~~~~~~~---~~~~~~Pn~ 78 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKK-YSQNVFDIDFFYSHPEEFYRFAKEGIF---PMLQAKPNL 78 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHHTG---GGGGCCCCH
T ss_pred HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCccccc-CCCceecHHHHhhCHHHHHHHHHHHHH---HhccCCCCH
Confidence 5789999999999999999999999999999999999985 53 46788999999999999976543 345899999
Q ss_pred HHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 015613 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (403)
Q Consensus 190 ~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~ 268 (403)
+|++|++|+++|++++||||||||||++||+++ +|+||+++.++|..|++.|+.+.+.+.+
T Consensus 79 ~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~------------------ 140 (246)
T 1yc5_A 79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL------------------ 140 (246)
T ss_dssp HHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT------------------
T ss_pred HHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHh------------------
Confidence 999999999999999999999999999999988 9999999999999999988765442111
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhh
Q 015613 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 348 (403)
Q Consensus 269 p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p 348 (403)
....+|+||.|||+|||+||||||.+|++.++++.+++++||++|||||||.|+|
T Consensus 141 -------------------------~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P 195 (246)
T 1yc5_A 141 -------------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYP 195 (246)
T ss_dssp -------------------------TTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEET
T ss_pred -------------------------ccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchh
Confidence 0114799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCCC
Q 015613 349 AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 399 (403)
Q Consensus 349 ~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~~ 399 (403)
+++++..++++|+++|+||+++++.++.+++.|.++++++|++|++.++|+
T Consensus 196 ~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg~~ 246 (246)
T 1yc5_A 196 AAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246 (246)
T ss_dssp GGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcCCC
Confidence 999999888889999999999999999999999999999999999998875
|
| >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* | Back alignment and structure |
|---|
| >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* | Back alignment and structure |
|---|
| >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* | Back alignment and structure |
|---|
| >3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* | Back alignment and structure |
|---|
| >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* | Back alignment and structure |
|---|
| >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A* | Back alignment and structure |
|---|
| >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 | Back alignment and structure |
|---|
| >3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 | Back alignment and structure |
|---|
| >1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 | Back alignment and structure |
|---|
| >3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* | Back alignment and structure |
|---|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
| >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* | Back alignment and structure |
|---|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 403 | ||||
| d2b4ya1 | 267 | c.31.1.5 (A:36-302) NAD-dependent deacetylase sirt | 6e-69 | |
| d1ma3a_ | 252 | c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Arc | 5e-57 | |
| d1yc5a1 | 245 | c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA | 3e-56 | |
| d1m2ka_ | 249 | c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Ar | 1e-53 | |
| d1s5pa_ | 235 | c.31.1.5 (A:) NAD-dependent deacetylase CobB {Esch | 8e-52 | |
| d1j8fa_ | 323 | c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Ho | 6e-49 | |
| d1q1aa_ | 289 | c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces c | 2e-40 |
| >d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase sirtuin-5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 216 bits (551), Expect = 6e-69
Identities = 70/292 (23%), Positives = 114/292 (39%), Gaps = 31/292 (10%)
Query: 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSR 166
PS + +FF + +++++GAG+S E G+P +R G + ++ + +
Sbjct: 1 PS-SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWR-KWQAQDLATPLAFAH 58
Query: 167 ARRRYWARSYAGWRRFMAAQPNPAHFALASLEK----AGRIDCMITQNVDRLHHRAGS-N 221
R W + + +PN H A+A E GR +ITQN+D LH +AG+ N
Sbjct: 59 NPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN 118
Query: 222 PLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRP 281
LE+HG+++ C CG + P + K P
Sbjct: 119 LLEIHGSLFKTRCTSCGVVAENYKSP-----ICPALSG------------------KGAP 155
Query: 282 DGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLG 341
+ + D E C G+L+P VV+FG+N+ ++ CD LV+G
Sbjct: 156 EPGTQ-DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVG 214
Query: 342 SSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 393
+S + A G +A N T A + G LP L
Sbjct: 215 TSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 266
|
| >d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 252 | Back information, alignment and structure |
|---|
| >d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Length = 245 | Back information, alignment and structure |
|---|
| >d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 249 | Back information, alignment and structure |
|---|
| >d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Length = 235 | Back information, alignment and structure |
|---|
| >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 289 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 403 | |||
| d1yc5a1 | 245 | NAD-dependent deacetylase NpdA {Thermotoga maritim | 100.0 | |
| d1m2ka_ | 249 | AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo | 100.0 | |
| d2b4ya1 | 267 | NAD-dependent deacetylase sirtuin-5 {Human (Homo s | 100.0 | |
| d1ma3a_ | 252 | AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog | 100.0 | |
| d1s5pa_ | 235 | NAD-dependent deacetylase CobB {Escherichia coli [ | 100.0 | |
| d1q1aa_ | 289 | Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 | |
| d1j8fa_ | 323 | Sirt2 histone deacetylase {Human (Homo sapiens) [T | 100.0 | |
| d2ji7a1 | 175 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 96.98 | |
| d2ihta1 | 177 | Carboxyethylarginine synthase {Streptomyces clavul | 96.67 | |
| d1ybha1 | 179 | Acetohydroxyacid synthase catalytic subunit {Thale | 96.65 | |
| d2ez9a1 | 183 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 96.57 | |
| d2djia1 | 177 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 96.51 | |
| d1ozha1 | 179 | Catabolic acetolactate synthase {Klebsiella pneumo | 96.45 | |
| d1t9ba1 | 171 | Acetohydroxyacid synthase catalytic subunit {Baker | 96.31 | |
| d1q6za1 | 160 | Benzoylformate decarboxylase {Pseudomonas putida [ | 94.24 | |
| d1pvda1 | 179 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 94.12 | |
| d1zpda1 | 175 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 91.26 | |
| d1ovma1 | 161 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 90.01 | |
| d3clsd2 | 123 | C-terminal domain of the electron transfer flavopr | 88.04 | |
| d1efva2 | 124 | C-terminal domain of the electron transfer flavopr | 87.87 | |
| d1s24a_ | 56 | Two-iron rubredoxin {Pseudomonas oleovorans [TaxId | 85.17 | |
| d1ybha1 | 179 | Acetohydroxyacid synthase catalytic subunit {Thale | 81.86 |
| >d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase NpdA species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3e-64 Score=479.55 Aligned_cols=241 Identities=37% Similarity=0.664 Sum_probs=208.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCC--CcChHHHhhChhHHHHHHHHHHhhhhccccCCCC
Q 015613 111 DINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (403)
Q Consensus 111 ~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~--p~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn 188 (403)
++++|+++|++|++|||+|||||||+||||||||++|+|.. +. .++.+.|.++|..+|.||.. .+..+.+++||
T Consensus 2 k~~~l~~~l~~~~~ivvltGAGiS~~SGIPdfR~~~G~w~~-~~~~~~~~~~f~~~p~~~~~~~~~---~~~~~~~~~P~ 77 (245)
T d1yc5a1 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKK-YSQNVFDIDFFYSHPEEFYRFAKE---GIFPMLQAKPN 77 (245)
T ss_dssp CCHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHH---HTGGGGGCCCC
T ss_pred cHHHHHHHHHhCCCEEEEECchhccccCCCCccCcCCCccC-CCcccccHHHHHhhhHHHHHHHHh---hhhhhhhhhhh
Confidence 46789999999999999999999999999999999999975 33 25778899998877776643 22345689999
Q ss_pred HHHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCC
Q 015613 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG 267 (403)
Q Consensus 189 ~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g 267 (403)
.+|++|++|+++|++.+||||||||||++||+++ +|+||++++.+|..|++.|+.+.+...+
T Consensus 78 ~~H~~L~~l~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~c~~~~~~~~~~~~~----------------- 140 (245)
T d1yc5a1 78 LAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL----------------- 140 (245)
T ss_dssp HHHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT-----------------
T ss_pred hhhHHHHHHHhcCCCceEeecccchHHHHcCCccccccccccceeeecccCCCccHHHHhhhh-----------------
Confidence 9999999999999999999999999999999999 9999999999999999999876543221
Q ss_pred CCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchh
Q 015613 268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTM 347 (403)
Q Consensus 268 ~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~ 347 (403)
.....|.|+.|||.|||+||||||.+|++.++++.++++++|++|||||||.|+
T Consensus 141 --------------------------~~~~~p~c~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllviGTSl~V~ 194 (245)
T d1yc5a1 141 --------------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVY 194 (245)
T ss_dssp --------------------------TTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEE
T ss_pred --------------------------hcccCCCccccCCcccCcEEEccccCCHHHHHHHHHHhhcCCEEEEECCCeEEe
Confidence 112579999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCC
Q 015613 348 SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSL 398 (403)
Q Consensus 348 p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~ 398 (403)
|+++++..++++|+++|+||+++|+.|..++++|++|++++|++|++.+|+
T Consensus 195 p~~~l~~~a~~~g~~~i~IN~~~t~~d~~~d~~i~g~~~e~l~~l~~~lgi 245 (245)
T d1yc5a1 195 PAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245 (245)
T ss_dssp TGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC
T ss_pred chhhhhHHHHHcCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999998875
|
| >d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
| >d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
| >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
| >d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
| >d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
| >d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
| >d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
| >d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]} | Back information, alignment and structure |
|---|
| >d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron transfer flavoprotein alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]} | Back information, alignment and structure |
|---|
| >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|