Citrus Sinensis ID: 015614

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT
Secondary Structure (PSIPRED)
cccEEccccccEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHcccccEEEEEccccccHHHHccccccccccccccccccccccccHHHHHHcccccccccccEEEEEEcccccccccHHHHHHHHHHcccccEEEccccccHHHHHHHcccccccEEEEccccHHHHHHHcccccHHHHHcccccEEEEcccccEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccEEEEccccccHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccccEEEEEccccccEHHHEcccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHcccccccEEEccccHHHHHHHHHHccHHHHHHccEEEEEEccccccEEccccHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccccc
Coil and Loop (DISEMBL)
mgvvnitknttmICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCinnfqpgkdleiiltkkplpvlivyrpkwagglyegdeHKRLEALHLAEDLGADYVDFELKVASNILgkqysshqsgtrfivscnldcetpseedLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGErglvsqllspkfngalvygslkgtpvlglptveSLRQTYKVEHINADTKVFgliskpvghskgpilhnptfrhvnyngiyvPMFVDDLKKFFstysspdfagfsvgfpyKEAVMKFCDEVHPLAQAIAAVNTIirrpsdgkligyntdcEASITAIEDAIKergykngtasfgsplAGRMFVLAGAGGAGRALAfgaksrgarVVIFDIDFGT
Flexible Loop (DISEMBL)
mgvvnitknttmicaPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNfqpgkdleiiltkkplpvlIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGkqysshqsgTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRAlafgaksrgarvVIFDIDFGT
Low Complexity Region (SEG)
MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLagaggagralafgaKSRGARVVIFDIDFGT
Disordered region (IsUnstruct)
***VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF**
Disordered Region (DISOPRED)
******TKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG*
Disordered Region (DISEMBL)
MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT
Disordered Region (DISPRO)
**VVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKER******ASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q9SQT8	603	Bifunctional 3-dehydroqui	yes	no	0.982	0.656	0.507	1e-101
C1H8L1	1523	Pentafunctional AROM poly	N/A	no	0.858	0.227	0.278	1e-27
C0S433	1603	Pentafunctional AROM poly	N/A	no	0.866	0.217	0.269	2e-27
C1FYJ9	1538	Pentafunctional AROM poly	N/A	no	0.866	0.226	0.269	2e-27
C5G8R4	1597	Pentafunctional AROM poly	N/A	no	0.841	0.212	0.272	2e-26
C5JKE6	1597	Pentafunctional AROM poly	N/A	no	0.841	0.212	0.270	7e-26
C4JYG6	1580	Pentafunctional AROM poly	N/A	no	0.846	0.215	0.276	2e-25
C5FQ73	1571	Pentafunctional AROM poly	N/A	no	0.875	0.224	0.262	2e-25
C6HCG7	1595	Pentafunctional AROM poly	N/A	no	0.843	0.213	0.281	7e-25
C5PA86	1589	Pentafunctional AROM poly	N/A	no	0.823	0.208	0.272	2e-24

>sp|Q9SQT8|DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/398 (50%), Positives = 272/398 (68%), Gaps = 2/398 (0%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           +G  +I KN ++ICAP+MA S+++++    +A   GAD+VEIRLD + +F P +DL+ I+
Sbjct: 84  IGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTII 143

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
            K PLP L  YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +       
Sbjct: 144 KKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKK 203

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
               + IVS +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  Q
Sbjct: 204 PGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQ 263

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADT 238
           VP I   +GERGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DT
Sbjct: 264 VPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDT 323

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFP 298
           KV+G+I KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P
Sbjct: 324 KVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIP 383

Query: 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 358
           +KEA ++ CDEV PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  + 
Sbjct: 384 HKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSS 443

Query: 359 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396
             S  SPLA +  V+ GAGGAG+ALA+GAK +GA+VVI
Sbjct: 444 VPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVI 481

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5

>sp|C1H8L1|ARO1_PARBA Pentafunctional AROM polypeptide OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=PAAG_07102 PE=3 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 176/392 (44%), Gaps = 46/392 (11%)

Query: 27   SNMYQAKAEGADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWA 76
            SN+ +    G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  
Sbjct: 985  SNILKEVTLGSDAVELRVDLLKDPQSDSEIPSVDYVAEQISVLRSRVSVPLVFTIRTKSQ 1044

Query: 77   GGLYEGDEHKRLEALH-LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 135
            GG +  D +     L+ LA  +G+++VD EL     +L  +  +   G   I++ + D E
Sbjct: 1045 GGRFPDDAYDAALRLYCLAIRMGSEFVDLELSFPEQLL--RTVTEMKGFSKIIASHHDPE 1102

Query: 136  TPSEEDLGYLVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVG 189
                   G  +          D+IKLV     + + A + +  +  +    VP+IA ++G
Sbjct: 1103 GLLSWANGSWIQIYNKALQYGDVIKLVGVAKTLDDNASLKKFKTWAEAKHDVPLIAINMG 1162

Query: 190  ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV--FGLISKP 247
             +G +S++L    NG +   S  G P    P   S R+  K   +  + K   F +I KP
Sbjct: 1163 YKGQLSRIL----NGFMTPVSHPGLPFKAAPGQLSAREIRKGLSLMGEIKAKKFAVIGKP 1218

Query: 248  VGHSKGPILHNPTFRHVNYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSVGFPYKEAVM 304
            V  S+ P +HN  F+ +     Y  +  D   D+K+F     SPDF G SV  P K  +M
Sbjct: 1219 VSSSRSPAMHNALFKQMGLPHTYGRIETDNPEDVKEFIR---SPDFGGASVTIPLKLDIM 1275

Query: 305  KFCDEVHPLAQAIAAVNTIIRRPS-------DGKLIGYNTDCEASITAIEDAIKERGYKN 357
               DE+ P A+ I AVNTI+  P+         +LIG NTD +  +  + DA        
Sbjct: 1276 PLLDEIAPEAEMIGAVNTIVSVPAAPGDKSQSSRLIGRNTDWQGMVRCLSDA-------- 1327

Query: 358  GTASFGSPLAGRMFVLAGAGGAGRALAFGAKS 389
            G  S  +P      ++ G GG  RA  F   S
Sbjct: 1328 GAYSAATPTTSSAGLIIGGGGTARAAIFALNS 1359

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) (taxid: 502779)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C0S433|ARO1_PARBP Pentafunctional AROM polypeptide OS=Paracoccidioides brasiliensis (strain Pb03) GN=PABG_02447 PE=3 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 173/389 (44%), Gaps = 40/389 (10%)

Query: 27   SNMYQAKAEGADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWA 76
            SN+ +    G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  
Sbjct: 1074 SNILKEVTLGSDAVELRVDLLKDPQSDSEIPSVDYVAEQISVLRSRVSVPLVFTIRTKSQ 1133

Query: 77   GGLYEGDEHKR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 135
            GG +  D +   L+   LA  +G+++VD EL     +L  +  +   G   I++ + D E
Sbjct: 1134 GGRFPDDAYDAALQLYRLAIRMGSEFVDLELSFPKQLL--RTVTEMKGFSKIIASHHDPE 1191

Query: 136  TPSEEDLGYLVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVG 189
                   G  +          D+IKLV     + + A + +  +  +    VP+IA ++G
Sbjct: 1192 GLLSWANGSWIQIYNKALQYGDVIKLVGVAKTLDDNASLKKFKTWAEAKHDVPLIAINMG 1251

Query: 190  ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV--FGLISKP 247
             +G +S++L    NG +   S    P    P   S R+  K   +  + K   F +I KP
Sbjct: 1252 YKGQLSRIL----NGFMTPVSHPSLPFKAAPGQLSAREIRKGLSLMGEIKAKKFAVIGKP 1307

Query: 248  VGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC 307
            V  S+ P +HN  F+ +     Y  +  D+++       SPDF G SV  P K  +M   
Sbjct: 1308 VSSSRSPAMHNALFKQMGLPHTYGRIETDNVEDVKEFILSPDFGGASVTIPLKLDIMPLL 1367

Query: 308  DEVHPLAQAIAAVNTIIRRPS-------DGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
            DE+ P A+ I AVNTI+  P+         +LIG NTD +  +  + DA        G  
Sbjct: 1368 DEIAPEAEMIGAVNTIVSVPAAPGDKFQSSRLIGRNTDWQGMVRCLSDA--------GAY 1419

Query: 361  SFGSPLAGRMFVLAGAGGAGRALAFGAKS 389
            S  +P      ++ G GG  RA  F   S
Sbjct: 1420 SAATPTTSSAGLIIGGGGTARAAIFALNS 1448

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Paracoccidioides brasiliensis (strain Pb03) (taxid: 482561)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C1FYJ9|ARO1_PARBD Pentafunctional AROM polypeptide OS=Paracoccidioides brasiliensis (strain Pb18) GN=PADG_00875 PE=3 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 173/389 (44%), Gaps = 40/389 (10%)

Query: 27   SNMYQAKAEGADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWA 76
            SN+ +    G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  
Sbjct: 985  SNILKEVTLGSDAVELRVDLLKDPQSDSEIPSVDYVAEQISVLRSRVSVPLVFTIRTKSQ 1044

Query: 77   GGLYEGDEHKR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 135
            GG +  D +   L+   LA  +G+++VD EL     +L  +  +   G   I++ + D E
Sbjct: 1045 GGRFPDDAYDAALQLYRLAIRMGSEFVDLELSFPEQLL--RTVTEMKGFSKIIASHHDPE 1102

Query: 136  TPSEEDLGYLVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVG 189
                   G  +          D+IKLV     + + A + +  +  +    VP+IA ++G
Sbjct: 1103 GLLSWANGSWIQIYNKALQYGDVIKLVGVAKTLDDNASLKKFKTWAEAKHDVPLIAINMG 1162

Query: 190  ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV--FGLISKP 247
             +G +S++L    NG +   S    P    P   S R+  K   +  + K   F +I KP
Sbjct: 1163 YKGQLSRIL----NGFMTPVSHPSLPFKAAPGQLSAREIRKGLSLMGEIKAKKFAVIGKP 1218

Query: 248  VGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC 307
            V  S+ P +HN  F+ +     Y  +  D+++       SPDF G SV  P K  +M   
Sbjct: 1219 VSSSRSPAMHNALFKQMGLPHTYGRIETDNVEDVKEFILSPDFGGASVTIPLKLDIMPLL 1278

Query: 308  DEVHPLAQAIAAVNTIIRRPS-------DGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
            DE+ P A+ I AVNTI+  P+         +LIG NTD +  +  + DA        G  
Sbjct: 1279 DEIAPEAEMIGAVNTIVSVPAAPGDKSQSSRLIGRNTDWQGMVRCLSDA--------GAY 1330

Query: 361  SFGSPLAGRMFVLAGAGGAGRALAFGAKS 389
            S  +P      ++ G GG  RA  F   S
Sbjct: 1331 SAATPTTSSAGLIIGGGGTARAAIFALNS 1359

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Paracoccidioides brasiliensis (strain Pb18) (taxid: 502780)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5G8R4|ARO1_AJEDR Pentafunctional AROM polypeptide OS=Ajellomyces dermatitidis (strain ER-3 / ATCC MYA-2586) GN=BDCG_01028 PE=3 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 173/385 (44%), Gaps = 46/385 (11%)

Query: 36   GADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
            G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  GG +  D +
Sbjct: 1076 GSDAVELRVDLLKDPQSDSEIPSVDYVAEQISVLRSRTSVPLVFTIRTKAQGGRFPDDAY 1135

Query: 86   KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY 144
               L+   LA  +G+++VD E+     +L  +  +   G   I++ + D +       G 
Sbjct: 1136 DAALQLYRLAIRMGSEFVDLEISFPEQLL--RTVTEMKGFSKIIASHHDPKGELSWANGS 1193

Query: 145  LVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVGERGLVSQLL 198
             +          D+IKLV     + + A + +  +  +    VPIIA ++G++G +S++L
Sbjct: 1194 WIQFYNKALQYGDVIKLVGVARSLDDNASLKKFKTWAEEKHDVPIIAINMGDKGQLSRML 1253

Query: 199  SPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINAD--TKVFGLISKPVGHSKGPIL 256
                NG +   S    P    P   S R+  K   +  +  +K F +I  PV  S+ P +
Sbjct: 1254 ----NGFMTPVSHPSLPFKAAPGQLSAREIRKGLSLIGEIKSKKFAVIGNPVSASRSPAM 1309

Query: 257  HNPTFRHVNYNGIYVPMFVDD---LKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPL 313
            HN  FR +    IY  +  +D   +KKF     SPDF G S+  P K  +M   DE+ P 
Sbjct: 1310 HNALFRQMGLPHIYGTLETEDPEIVKKFIR---SPDFGGASITIPLKLDIMPLLDEIAPE 1366

Query: 314  AQAIAAVNTIIRRP-------SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPL 366
            A +I AVNTI+  P          +LIG NTD +  +  + DA        G     +P 
Sbjct: 1367 AVSIGAVNTIVCAPPAPDDQSQAPRLIGRNTDWQGMVRCLSDA--------GAYPAATPT 1418

Query: 367  AGRMFVLAGAGGAGRALAFGAKSRG 391
                 ++ G GG  RA  F  +S G
Sbjct: 1419 TTSAGLVIGGGGTARAAIFALQSMG 1443

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Ajellomyces dermatitidis (strain ER-3 / ATCC MYA-2586) (taxid: 559297)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5JKE6|ARO1_AJEDS Pentafunctional AROM polypeptide OS=Ajellomyces dermatitidis (strain SLH14081) GN=BDBG_02999 PE=3 SV=1

 Score =  118 bits (296), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 172/385 (44%), Gaps = 46/385 (11%)

Query: 36   GADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
            G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  GG +  D +
Sbjct: 1076 GSDAVELRVDLLKDPQSDSEIPSVDYVAEQISVLRSRTSVPLVFTIRTKAQGGRFPDDAY 1135

Query: 86   KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY 144
               L+   LA  +G+++VD E+     +L  +  +   G   I++ + D +       G 
Sbjct: 1136 DAALQLYRLAIRMGSEFVDLEISFPEQLL--RTVTEMKGFSKIIASHHDPKGELSWANGS 1193

Query: 145  LVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVGERGLVSQLL 198
             +          D+IKLV     + + A + +  +  +    VPIIA ++G++G +S++L
Sbjct: 1194 WIQFYNKALQYGDVIKLVGVARSLDDNASLKKFKTWAEEKHDVPIIAINMGDKGQLSRML 1253

Query: 199  SPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINAD--TKVFGLISKPVGHSKGPIL 256
                NG +   S    P    P   S R+  K   +  +  +K F +I  PV  S+ P +
Sbjct: 1254 ----NGFMTPVSHPSLPFKAAPGQLSAREIRKGLSLIGEIKSKKFAVIGNPVSASRSPAM 1309

Query: 257  HNPTFRHVNYNGIYVPMFVDD---LKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPL 313
            HN  FR +     Y  +  +D   +KKF     SPDF G S+  P K  +M   DE+ P 
Sbjct: 1310 HNALFRQMGLPHTYGTLETEDPEIVKKFIR---SPDFGGASITIPLKLDIMPLLDEIAPE 1366

Query: 314  AQAIAAVNTIIRRP-------SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPL 366
            A +I AVNTI+  P          +LIG NTD +  +  + DA        G     +P 
Sbjct: 1367 AVSIGAVNTIVCAPPAPDDQSQAPRLIGRNTDWQGMVRCLSDA--------GAYPAATPT 1418

Query: 367  AGRMFVLAGAGGAGRALAFGAKSRG 391
                 ++ G GG  RA  F  +S G
Sbjct: 1419 TTSAGLVIGGGGTARAAIFALQSMG 1443

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Ajellomyces dermatitidis (strain SLH14081) (taxid: 559298)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C4JYG6|ARO1_UNCRE Pentafunctional AROM polypeptide OS=Uncinocarpus reesii (strain UAMH 1704) GN=UREG_07217 PE=3 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 173/383 (45%), Gaps = 42/383 (10%)

Query: 36   GADVVEIRLDCI-----NNFQPGKD-----LEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
            G+D VE+R+D +     ++  P  D     + I+ ++  +P++   R K  GG +  D H
Sbjct: 1067 GSDAVELRVDLLVDPSSSSEMPSVDYVAEQISILRSRVSVPLVFTIRTKSQGGRFPDDAH 1126

Query: 86   KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY 144
               L+   LA  +G+++VD E+     +L  +  +   G   I++ + D         G 
Sbjct: 1127 NAALDLYRLAIRMGSEFVDLEVTFPEYVL--RAVTEMKGVSKIIASHHDVANRLSWRNGS 1184

Query: 145  LVS--RMQATGADIIKLVFSVNDITE-IA----RIFQLLSHCQVPIIAYSVGERGLVSQL 197
                        DIIKLV   + + + IA    +I+   +H  +P+IA ++GERG +S++
Sbjct: 1185 WTQFYNKALQYGDIIKLVGIASQLDDNIALREFKIWAKKAH-DIPVIAINMGERGRLSRI 1243

Query: 198  LSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHI--NADTKVFGLISKPVGHSKGPI 255
            L    NG +   S    P    P   S ++  +   +    ++K F ++ KP+  S+ P 
Sbjct: 1244 L----NGFMTPVSHPKLPFKAAPGQLSAKEIREGLSLMGEIESKKFAIVGKPISASRSPA 1299

Query: 256  LHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ 315
            LHN  F  V    +Y  +  DD++       +PDF G S+  P K  +M   DE+ P A+
Sbjct: 1300 LHNALFADVGLPHVYGRLETDDVQNVKDLIHAPDFGGASITIPLKLDIMPLLDEIAPEAK 1359

Query: 316  AIAAVNTII---RRPSDGK----LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAG 368
             I AVNTI+   R P D K    LIGYNTD +  +  +       G     ++   P  G
Sbjct: 1360 VIGAVNTIVPAPREPGDVKKGPRLIGYNTDWQGMVQCL-----RHGGAVSPSTSNDPAPG 1414

Query: 369  RMFVLAGAGGAGRALAFGAKSRG 391
               ++ G GG  RA      S G
Sbjct: 1415 ---LVIGGGGTARAAIHALHSMG 1434

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Uncinocarpus reesii (strain UAMH 1704) (taxid: 336963)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5FQ73|ARO1_ARTOC Pentafunctional AROM polypeptide OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=MCYG_04845 PE=3 SV=1

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 169/388 (43%), Gaps = 35/388 (9%)

Query: 24   QVLSNMYQAKAEGADVVEIRLDCINNFQP----------GKDLEIILTKKPLPVLIVYRP 73
            Q+ +++ +A   G+D +E+R+D + +              + +  + +    P++   R 
Sbjct: 1064 QLSADILRAATFGSDAIELRVDLLKDPSSTSGVPSVGYVAEQMSFLRSHASQPLIFTIRT 1123

Query: 74   KWAGGLYEGDE-HKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNL 132
            K  GG +  D   K LE   LA  +G+++VD EL   +++L     +   G   I++ + 
Sbjct: 1124 KAQGGQFPDDAVDKALELYKLAIRMGSEFVDLELSFPNDLL--HAVTEMKGFSKIIASHH 1181

Query: 133  DCETPSEEDLGYLVSRMQAT--GADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAY 186
            D  +      G  +          DIIKL+       +   + Q  S  +    VPIIA 
Sbjct: 1182 DVNSQLSWSNGSWIQYYNKALQHGDIIKLIGVAKTFEDNMALQQFKSWAEKSYPVPIIAI 1241

Query: 187  SVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISK 246
            ++G +G +S++L+ +F   + + +L      G  + + +RQ   +     D K F L  K
Sbjct: 1242 NMGNKGRLSRILN-RFMTPVSHPALPFKAAPGQVSAKDIRQALTLMG-ELDAKKFALFGK 1299

Query: 247  PVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKF 306
            P+  S+ P LHN  F    +   Y  +  D  +       S DF G SV  P KE +M  
Sbjct: 1300 PISASRSPALHNALFTQAGFPHDYGLLETDKAENVEKFIRSDDFGGASVTIPLKEQIMGL 1359

Query: 307  CDEVHPLAQAIAAVNTIIRRPSDG---KLIGYNTDCEASITAIEDAIKERGYKNGTASFG 363
             DE+ P A+ I AVNTI+     G   +LIGYNTD +     ++DA        G     
Sbjct: 1360 LDEISPEAKIIGAVNTIVPITVSGRPPRLIGYNTDWQGMARCLKDA--------GAICSN 1411

Query: 364  SPLAGRMFVLAGAGGAGRALAFGAKSRG 391
            +   G   +  G+GG  RA  +   S G
Sbjct: 1412 N---GESALTIGSGGTARAAIYSLHSMG 1436

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) (taxid: 554155)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C6HCG7|ARO1_AJECH Pentafunctional AROM polypeptide OS=Ajellomyces capsulata (strain H143) GN=HCDG_03716 PE=3 SV=1

 Score =  115 bits (288), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 173/384 (45%), Gaps = 44/384 (11%)

Query: 36   GADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
            G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  GG +  D +
Sbjct: 1076 GSDAVELRVDLLKDPQSDNEIPSVDYVAEQISVLRSRASVPLVFTIRTKGQGGRFPDDAY 1135

Query: 86   KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY 144
               L+   LA  +G+++VD E+     +L  +  +   G   I++ + D +       G 
Sbjct: 1136 DAALQLYRLAVRMGSEFVDLEISFPEQLL--RTVTEMKGFSKIIASHHDPKGQLSWVNGS 1193

Query: 145  LVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVGERGLVSQLL 198
             +          D+IKLV     I +   + +  +  +    VPIIA ++G++G +S++L
Sbjct: 1194 WIQFYNKALQYGDVIKLVGVARSIDDNISLKKFKTWAEEKHNVPIIAINMGDKGQLSRML 1253

Query: 199  SPKFNGALVYGSLKGTPVLGLPTVESLRQTYK----VEHINADTKVFGLISKPVGHSKGP 254
                NG +   S    P    P   S R+  K    +  I A  K F +I  PV  S+ P
Sbjct: 1254 ----NGFMTPVSHPSLPFKAAPGQLSAREIRKGLSLIGEIKA--KKFAVIGNPVSASRSP 1307

Query: 255  ILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLA 314
             +HN  FR +     Y  +  D+ +       SPDF G SV  P K ++M   DE+ P A
Sbjct: 1308 AMHNTLFRQMGLPHTYGTLETDNPEVAKEFIRSPDFGGASVTIPLKLSIMPLLDEIAPEA 1367

Query: 315  QAIAAVNTIIRRP--SDGK-----LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLA 367
             +I AVNTI+  P   DGK     LIG+NTD +  +  + DA         TAS G    
Sbjct: 1368 MSIGAVNTIVCAPPAPDGKSQTPRLIGHNTDWQGMVRCLSDAGAYAAATPTTASAG---- 1423

Query: 368  GRMFVLAGAGGAGRALAFGAKSRG 391
                ++ G GG  RA  F  ++ G
Sbjct: 1424 ----LVIGGGGTARAAIFALQNMG 1443

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Ajellomyces capsulata (strain H143) (taxid: 544712)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5PA86|ARO1_COCP7 Pentafunctional AROM polypeptide OS=Coccidioides posadasii (strain C735) GN=CPC735_008210 PE=3 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 167/374 (44%), Gaps = 42/374 (11%)

Query: 36   GADVVEIRLDCINNFQPGKDL----------EIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
            G+D VE+R+D + +     D+           ++ ++  LP++   R K  GG +  D H
Sbjct: 1071 GSDAVELRVDLLVDPSSANDIPSVDYVAEQISMLRSRVSLPLVFTIRTKSQGGRFPDDAH 1130

Query: 86   KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE---TPSEED 141
               L+   LA  +G+++VD E+    +IL  +  +   G   I++ + D     + +   
Sbjct: 1131 DAALDLYRLAVRMGSEFVDLEVTFPEHIL--RAVTEMKGFSKIIASHHDVSGSLSWANGS 1188

Query: 142  LGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVGERGLVSQL 197
             G   ++    G DIIKLV     + +   + +  +  Q    +P+IA ++GE+G +S++
Sbjct: 1189 WGQFYNKALQYG-DIIKLVGVAKCLDDNIALRKFKTWAQDAHEIPVIAINMGEKGRLSRI 1247

Query: 198  LSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHI--NADTKVFGLISKPVGHSKGPI 255
            L    NG +   S    P    P   S +   K   +    + + F +  KPV  S+ P 
Sbjct: 1248 L----NGFMTPVSHPKLPFKAAPGQLSAQDIRKGLSLMGEIEPRKFAIFGKPVSASRSPA 1303

Query: 256  LHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ 315
            +HN  F  V     Y  +  D+++       +PDF G SV  P K  +M   DE+ P AQ
Sbjct: 1304 MHNALFAQVGLPHAYSRLETDNVEDVREFIHAPDFGGASVTIPLKLDIMPLLDEISPEAQ 1363

Query: 316  AIAAVNTII---RRPSD----GKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAG 368
             I AVNTI+   R P D     +LIGYNTD +  +  +      R  K  + SF      
Sbjct: 1364 VIGAVNTIVPIPRGPGDMTGYPRLIGYNTDWQGMVRCL------RHGKAISPSFADTAVP 1417

Query: 369  RMFVLAGAGGAGRA 382
             + +  G GG  RA
Sbjct: 1418 GLVI--GGGGTARA 1429

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Coccidioides posadasii (strain C735) (taxid: 222929)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
147837952	1071	hypothetical protein VITISV_034026 [Viti	0.975	0.366	0.725	1e-165
225451144	519	PREDICTED: bifunctional 3-dehydroquinate	0.995	0.772	0.725	1e-165
255542470	519	shikimate dehydrogenase, putative [Ricin	0.995	0.772	0.718	1e-164
224130894	518	dehydroquinate dehydratase/ shikimate de	0.992	0.772	0.705	1e-162
224125426	518	dehydroquinate dehydratase/ shikimate de	0.992	0.772	0.695	1e-159
356504076	524	PREDICTED: bifunctional 3-dehydroquinate	0.995	0.765	0.692	1e-154
57920902	521	3-dehydroquinate dehydratase / shikimate	0.992	0.767	0.680	1e-149
356573042	524	PREDICTED: LOW QUALITY PROTEIN: bifuncti	0.995	0.765	0.642	1e-143
255559348	515	shikimate dehydrogenase, putative [Ricin	0.975	0.763	0.572	1e-118
116787099	514	unknown [Picea sitchensis]	0.970	0.760	0.558	1e-115

>gi|147837952|emb|CAN60563.1| hypothetical protein VITISV_034026 [Vitis vinifera]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/401 (72%), Positives = 336/401 (83%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           M  V + K  TMIC PLM QSVEQ++ +M++AK EGAD+VE+RLD INNF P +DLEIIL
Sbjct: 1   MDDVGVLKKETMICTPLMGQSVEQMVRDMHKAKVEGADLVEVRLDYINNFHPQQDLEIIL 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
             KPLPV+IVYRPKW GG YEGDEH RLEALHLAE LGADY+DFELKVAS+ LGKQ    
Sbjct: 61  RNKPLPVMIVYRPKWEGGQYEGDEHSRLEALHLAEKLGADYIDFELKVASDFLGKQKMDQ 120

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
            S +R IVSC +D  TP  EDL   V+ +Q+TGAD+IKLV +  +ITEI +IF LLSHCQ
Sbjct: 121 HSSSRTIVSCYVDGVTPPIEDLICRVALLQSTGADMIKLVINATNITEITKIFHLLSHCQ 180

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV 240
           +P+IAYS+G+RG +SQ+L  KF G LVYGS++G+PV GLPT+ESLR+ YKV++IN DTKV
Sbjct: 181 MPLIAYSIGDRGFMSQILCRKFGGFLVYGSMEGSPVAGLPTLESLREAYKVQYINKDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYK 300
           FGLISKPVGHSKGPILHNP FRHVNYNGIYVPM VDDLK+FFS YSSPDFAGFSVG PYK
Sbjct: 241 FGLISKPVGHSKGPILHNPAFRHVNYNGIYVPMLVDDLKEFFSIYSSPDFAGFSVGIPYK 300

Query: 301 EAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
           EAV  FCDE+HPLAQ+I AVNTI+RRPSDGKLIGYNTDCEASITAIEDA++ERG  NG A
Sbjct: 301 EAVTGFCDELHPLAQSIGAVNTIMRRPSDGKLIGYNTDCEASITAIEDALRERGLPNGEA 360

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401
              SPL G+ FVL GAGGAGRALAFGA+SRGA++VIFD+DF
Sbjct: 361 PLNSPLTGKQFVLVGAGGAGRALAFGARSRGAQLVIFDLDF 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451144|ref|XP_002270055.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic [Vitis vinifera] gi|298204989|emb|CBI34296.3| unnamed protein product [Vitis vinifera]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/401 (72%), Positives = 336/401 (83%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           M  V + K  TMIC PLM QSVEQ++ +M++AK EGAD+VE+RLD INNF P +DLEIIL
Sbjct: 1   MDDVGVLKKETMICTPLMGQSVEQMVRDMHKAKVEGADLVEVRLDYINNFHPQQDLEIIL 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
             KPLPV+IVYRPKW GG YEGDEH RLEALHLAE LGADY+DFELKVAS+ LGKQ    
Sbjct: 61  RNKPLPVMIVYRPKWEGGQYEGDEHSRLEALHLAEKLGADYIDFELKVASDFLGKQKMDQ 120

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
            S +R IVSC +D  TP  EDL   V+ +Q+TGAD+IKLV +  +ITEI +IF LLSHCQ
Sbjct: 121 HSSSRTIVSCYVDGVTPPIEDLICRVALLQSTGADMIKLVINATNITEITKIFHLLSHCQ 180

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV 240
           +P+IAYS+G+RG +SQ+L  KF G LVYGS++G+PV GLPT+ESLR+ YKV++IN DTKV
Sbjct: 181 MPLIAYSIGDRGFMSQILCRKFGGFLVYGSMEGSPVAGLPTLESLREAYKVQYINKDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYK 300
           FGLISKPVGHSKGPILHNP FRHVNYNGIYVPM VDDLK+FFS YSSPDFAGFSVG PYK
Sbjct: 241 FGLISKPVGHSKGPILHNPAFRHVNYNGIYVPMLVDDLKEFFSIYSSPDFAGFSVGIPYK 300

Query: 301 EAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
           EAV  FCDE+HPLAQ+I AVNTI+RRPSDGKLIGYNTDCEASITAIEDA++ERG  NG A
Sbjct: 301 EAVTGFCDELHPLAQSIGAVNTIMRRPSDGKLIGYNTDCEASITAIEDALRERGLPNGEA 360

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401
              SPL G+ FVL GAGGAGRALAFGA+SRGA++VIFD+DF
Sbjct: 361 PLNSPLTGKQFVLVGAGGAGRALAFGARSRGAQLVIFDLDF 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542470|ref|XP_002512298.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223548259|gb|EEF49750.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/401 (71%), Positives = 344/401 (85%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           MG V    ++ M+C PLMAQSVEQ++S+MY AK +GADVVE+RLD I+NFQP +DL+ IL
Sbjct: 1   MGSVGELTSSVMVCTPLMAQSVEQMISDMYNAKTQGADVVEVRLDYIDNFQPPQDLQAIL 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
             KPLPV+IVYRPK  GGLYEGDE  RLEAL LA  LGADYVDFELKVAS+++G+   +H
Sbjct: 61  RNKPLPVIIVYRPKSEGGLYEGDEPTRLEALRLAYVLGADYVDFELKVASDLIGELKGTH 120

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
            +G++ IVSC ++ + P++E+L  LV+ MQATGADIIKLV + N+ITE+ RIF L+ HCQ
Sbjct: 121 HTGSKVIVSCYVNGDMPTKENLSQLVASMQATGADIIKLVSTANNITELDRIFHLILHCQ 180

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV 240
           VPIIAYSVGERGL+SQLLSPKF G+L+YGS++G+ + GLPT++SLR+ YKV +IN+DTKV
Sbjct: 181 VPIIAYSVGERGLISQLLSPKFGGSLLYGSMEGSSIPGLPTLDSLREAYKVAYINSDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYK 300
           FGL+SKPV HSKGP+LHNPTFRH NYNG YVPMFVDDLK+FFS YSSPDFAGFSVGFPYK
Sbjct: 241 FGLVSKPVSHSKGPLLHNPTFRHANYNGTYVPMFVDDLKEFFSVYSSPDFAGFSVGFPYK 300

Query: 301 EAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
           EAV++FCDEVHPLA++I AVNTIIRRP DGKLIG+NTDCEA+ITAIEDA+KE+GY +G  
Sbjct: 301 EAVVEFCDEVHPLAKSIGAVNTIIRRPGDGKLIGHNTDCEAAITAIEDALKEQGYMDGRT 360

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401
           S  SPL GR FVL GAGGAGRALAFGAKSRGAR+VIFDID 
Sbjct: 361 SSNSPLTGRQFVLVGAGGAGRALAFGAKSRGARIVIFDIDL 401

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130894|ref|XP_002328402.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222838117|gb|EEE76482.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 283/401 (70%), Positives = 341/401 (85%), Gaps = 1/401 (0%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           MG V +  N+ M+CAPLMAQSVEQ++ +M+ AKA+GADVVE+RLDCI+ FQP +DLE I+
Sbjct: 1   MGSVGVLTNSVMVCAPLMAQSVEQMVIDMHSAKAQGADVVEVRLDCISKFQPRQDLETII 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
             KPLPV+IVYRPKW GG YEGDEH+RLEAL LA DLGADY+D ELKVAS ++ +  + H
Sbjct: 61  RNKPLPVIIVYRPKWEGGQYEGDEHRRLEALRLANDLGADYIDLELKVASELIWELKNKH 120

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
           Q+G + IVS  L+  TPS+E+L +LV+ MQAT ADIIK+V + +DITE+ RIF LLSHC+
Sbjct: 121 QNGGKVIVSSYLNGATPSKENLSHLVATMQATEADIIKVVSNADDITEMERIFHLLSHCE 180

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV 240
           VP +AYSVGERGL+SQLL PKF GALVYGS++G  + GLPT++SLR+ YKV+ IN+DTKV
Sbjct: 181 VPAVAYSVGERGLISQLLCPKFGGALVYGSMEGNSIPGLPTLDSLREAYKVDCINSDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYK 300
           FGL+SKPVGHSKGP+LHNPT RHVN+NGIYVPMFVDDLKKFF  Y+SPDFAG+SVGFPYK
Sbjct: 241 FGLVSKPVGHSKGPLLHNPTLRHVNFNGIYVPMFVDDLKKFFDVYASPDFAGYSVGFPYK 300

Query: 301 EAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
           EAV++FCDEVHPLA+ I AVNTIIRRP DGKLIGYNTDCE SITAIEDA++++ Y NG  
Sbjct: 301 EAVVQFCDEVHPLAKCIGAVNTIIRRPCDGKLIGYNTDCEGSITAIEDALRDQKYVNGR- 359

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401
           S  SPLAG+ FV+ GAGGAGRA+A GAKSRGAR++IFDID 
Sbjct: 360 SLNSPLAGKQFVVVGAGGAGRAIAVGAKSRGARLIIFDIDL 400

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125426|ref|XP_002319583.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222857959|gb|EEE95506.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/401 (69%), Positives = 338/401 (84%), Gaps = 1/401 (0%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           MG   I  N+TM+CAPLMA+SVEQ++ +M  A+A+GAD VE+RLD IN+FQP +DLE I+
Sbjct: 1   MGRAGILANSTMVCAPLMARSVEQMVIDMQSAEAQGADAVEVRLDYINSFQPSQDLETII 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
             KPLPV+IVYRP+W GG YEGDEH RLEAL LA +LGADY+D ELKVAS+++ +  + H
Sbjct: 61  RNKPLPVIIVYRPRWEGGQYEGDEHTRLEALRLAHELGADYIDVELKVASDLVREVKNKH 120

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
           Q+G + IVS  L   TPS+EDL +LV+ MQAT ADIIK+V + NDITE+ RIF LLSH Q
Sbjct: 121 QTGGKVIVSSYLSGATPSKEDLSHLVASMQATKADIIKVVSNANDITELDRIFHLLSHMQ 180

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV 240
           VP +AYS+GERGL+SQLL PKF GALVYG+++G  + GLPT++SLR+ YKVE+IN+DTKV
Sbjct: 181 VPAVAYSLGERGLISQLLCPKFGGALVYGAMEGNSIPGLPTLDSLREAYKVENINSDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYK 300
           FGL+SKPV HSKGPILHNP FRH N+NGIYVPMFVDDLK+FF  Y+SPDFAG+SVGFPYK
Sbjct: 241 FGLVSKPVSHSKGPILHNPAFRHANFNGIYVPMFVDDLKEFFEVYASPDFAGYSVGFPYK 300

Query: 301 EAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
           EAV++FCDEVHPLA++I AVNTIIR+PSDGKLIGYNTDCE SI +IEDA+K++ Y NG A
Sbjct: 301 EAVVQFCDEVHPLAKSIGAVNTIIRKPSDGKLIGYNTDCEGSIASIEDALKDQRYING-A 359

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401
           S  SPLAG+ FV+ GAGGAGRA+A GAKSRGARV+IFDID 
Sbjct: 360 SLNSPLAGKQFVVVGAGGAGRAIAVGAKSRGARVIIFDIDL 400

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504076|ref|XP_003520825.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/406 (69%), Positives = 328/406 (80%), Gaps = 5/406 (1%)

Query: 1   MGVVNITKNTTMICAPLMAQ---SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE 57
           MG   + K++ M+CA +      S EQ+++ M+QAKAEGAD+VE+RLDCI NF    DL+
Sbjct: 1   MGSNQVWKHSVMVCAAITTHQYVSAEQIVNGMHQAKAEGADIVELRLDCITNFHSHHDLK 60

Query: 58  IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNI--LGK 115
           IIL  KPLPVLIV RPKW GGLYEGDE+KRLEAL LA +L AD++D ELK AS +  L +
Sbjct: 61  IILQNKPLPVLIVNRPKWEGGLYEGDENKRLEALQLAVELSADFIDVELKAASCLPTLVE 120

Query: 116 QYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQL 175
              +H S  + IVSC +D  TP  E L  LV  MQATGADIIKLV    DITEI RIF L
Sbjct: 121 HMRNHNSHGKIIVSCYVDGTTPPHEVLLQLVELMQATGADIIKLVTLAADITEIKRIFSL 180

Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 235
             +CQVP+IAYSVGERGL+SQLLSPKF G  VYGSL G P+ GLP+++S+++ YK+EH+N
Sbjct: 181 FLYCQVPLIAYSVGERGLISQLLSPKFGGFFVYGSLAGNPIPGLPSLDSIQEAYKLEHVN 240

Query: 236 ADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSV 295
           ADTKVFGLISKPV HS+GPILHNP+F+ VNYNGIYVPMFVDDLKKFFSTY SPDF+GFSV
Sbjct: 241 ADTKVFGLISKPVSHSRGPILHNPSFKDVNYNGIYVPMFVDDLKKFFSTYPSPDFSGFSV 300

Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 355
           G PYKE V++FCDEVHPLAQ+I AVNTIIRRP DGKL+GYNTDCEA+ITAIEDA+ E G 
Sbjct: 301 GIPYKEEVLRFCDEVHPLAQSIGAVNTIIRRPRDGKLVGYNTDCEAAITAIEDALIEHGC 360

Query: 356 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401
            +G AS GSPLAGR+FVL GAGGAG+ALAFGAKSRGAR+VIFDIDF
Sbjct: 361 NDGEASLGSPLAGRLFVLVGAGGAGKALAFGAKSRGARLVIFDIDF 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57920902|gb|AAS90324.2| 3-dehydroquinate dehydratase / shikimate dehydrogenase isoform 2 [Nicotiana tabacum]

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/404 (68%), Positives = 324/404 (80%), Gaps = 4/404 (0%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           MG V + KN+ M+CAPLMA SVEQ++  M QAKA+GAD+VEIRLD INNFQP KDL+++L
Sbjct: 1   MGSVGLLKNSAMVCAPLMAPSVEQLVHGMLQAKAQGADLVEIRLDGINNFQPQKDLQVLL 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDE---HKRLEALHLAEDLGADYVDFELKVASNILGKQY 117
              PLPVLIVYRP W G  +E D+   HK+LE L  A++LGADY++ +LK+AS+   K+ 
Sbjct: 61  NNNPLPVLIVYRPIWEGNEFEEDDDHIHKQLEVLRWAKELGADYIELDLKIASDFTKKEK 120

Query: 118 SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS 177
               SG + I SC +D  T S+EDL  +V+ MQ+TGADI+K+V + NDITE+ ++F LLS
Sbjct: 121 PRWSSGCKVIASCFVDNVT-SKEDLSQVVAHMQSTGADILKIVTNANDITELEKMFHLLS 179

Query: 178 HCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINAD 237
           HCQVP+IAYS+GERGL+SQLL PKF   LVYGSL    V GLPT+ SLRQ Y V+ ++ D
Sbjct: 180 HCQVPLIAYSLGERGLISQLLGPKFGSVLVYGSLDCNAVPGLPTLGSLRQAYGVDFMDTD 239

Query: 238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGF 297
           TKVFGLISKPVGHSKGPILHNPTFRHV YNGIYVPMFVDDLK+FF  YSSPDFAGFSVG 
Sbjct: 240 TKVFGLISKPVGHSKGPILHNPTFRHVGYNGIYVPMFVDDLKEFFRVYSSPDFAGFSVGI 299

Query: 298 PYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKN 357
           PYKEAV+ FCDEV PLA++I AVNTII+RP DGKLIGYNTDCEASITAIEDA+K  G  N
Sbjct: 300 PYKEAVVSFCDEVDPLAKSIGAVNTIIQRPCDGKLIGYNTDCEASITAIEDALKVNGLTN 359

Query: 358 GTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401
           G A   SPLAG++FVL GAGGAGRALAFGAKSR A +VIFDIDF
Sbjct: 360 GAAFLPSPLAGKLFVLVGAGGAGRALAFGAKSRRAEIVIFDIDF 403

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573042|ref|XP_003554674.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/406 (64%), Positives = 318/406 (78%), Gaps = 5/406 (1%)

Query: 1   MGVVNITKNTTMICAPLMAQ---SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE 57
           MG     K++ M+CAP+  Q   SVEQ+ ++MYQAKAE AD+VE+RLDCI NF P  +L+
Sbjct: 1   MGSNQDWKHSVMVCAPITTQQSVSVEQIANDMYQAKAEDADIVEVRLDCITNFHPXHELK 60

Query: 58  IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNI--LGK 115
            IL  KPLPVLIV +PKW GGLYEGDE+ +LEAL LA +LGAD+++ +LK AS +  L +
Sbjct: 61  TILQNKPLPVLIVNQPKWEGGLYEGDENMQLEALQLAVELGADFIEVQLKAASCLPTLVE 120

Query: 116 QYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQL 175
              +H S  + IVSC +D   P +E+L  LV  MQ T ADIIKLV    DITEI +IF L
Sbjct: 121 HKRNHNSHGKIIVSCYVDGIIPPQEELLQLVELMQGTEADIIKLVTHAADITEIIKIFSL 180

Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 235
             +CQVP+IAYSVGERGL+SQLLS KF G  VY SL G P+ GLP+++++++ YK+EH+ 
Sbjct: 181 FPYCQVPLIAYSVGERGLISQLLSQKFGGFFVYESLAGNPIPGLPSLDNIQEAYKLEHVK 240

Query: 236 ADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSV 295
           ADTKVFGLISKP+ HSKGPILHNP FRH+NYNGIYVPMFVDDLK+FF+TY  PDF+GF V
Sbjct: 241 ADTKVFGLISKPISHSKGPILHNPPFRHINYNGIYVPMFVDDLKEFFNTYPCPDFSGFIV 300

Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 355
           G PYKE +++FCDEVHPLAQ+I AVNTIIRR   GKL+GYNT CEA+ITAIEDA+ E G 
Sbjct: 301 GIPYKEEILRFCDEVHPLAQSIGAVNTIIRRARHGKLVGYNTHCEAAITAIEDALIEHGC 360

Query: 356 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401
            +G AS GSPLAGR+FVL GAGGAG ALAFG+KSRGA +VIFDI+F
Sbjct: 361 NDGGASLGSPLAGRLFVLVGAGGAGIALAFGSKSRGALLVIFDINF 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559348|ref|XP_002520694.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223540079|gb|EEF41656.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/395 (57%), Positives = 299/395 (75%), Gaps = 2/395 (0%)

Query: 8   KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
           +N  ++C PL  ++  ++LS M +A+ EGAD+VE+R+D ++ F     +E ++  + LP 
Sbjct: 4   QNNLLVCTPLECETAGEMLSCMEKARGEGADLVELRVDSMS-FSHISQVEKLIKLRTLPA 62

Query: 68  LIVYRPKWAGGLYEGDEHKR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRF 126
           ++ +RPK +     GD  K  L+ L LA DL  ++V+ E +VAS++   +Y  ++S  + 
Sbjct: 63  IVSFRPKTSKISSNGDSKKTCLQVLSLALDLDVEFVEMEYEVASDVSMAEYIYNRSSGKL 122

Query: 127 IVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAY 186
           IVS  ++   PS E LG L++ +Q+TGAD+IKLV +V+ IT++A +F++L+HCQVP+IA 
Sbjct: 123 IVSSYVNGGKPSAEKLGNLIANLQSTGADVIKLVINVDYITDLAPVFKMLAHCQVPLIAL 182

Query: 187 SVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISK 246
           +VG RGL+SQLL PKF G LVYGSL+   V G+PT+ SLR  YK+E+IN+DTKVFGLIS 
Sbjct: 183 AVGSRGLISQLLGPKFGGFLVYGSLRDKAVPGMPTLFSLRHVYKLEYINSDTKVFGLISN 242

Query: 247 PVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKF 306
           PVGHSKGPILHNP FRH  YNGIYVPM VDD+K+FF TY+S DFAGFSVG P+KEA +  
Sbjct: 243 PVGHSKGPILHNPAFRHTGYNGIYVPMQVDDIKEFFRTYTSTDFAGFSVGIPHKEAAVSC 302

Query: 307 CDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPL 366
           CDEVHPLA++I AVNTI+RRP+DGKL+GYNTDCEASITAIEDA++ER   N  A   SPL
Sbjct: 303 CDEVHPLAKSIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALRERRPTNRGALDTSPL 362

Query: 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401
           AG+ FVL GAGGAGRALAFGA SRGARVV+F+ +F
Sbjct: 363 AGKTFVLIGAGGAGRALAFGASSRGARVVVFNRNF 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116787099|gb|ABK24375.1| unknown [Picea sitchensis]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/401 (55%), Positives = 289/401 (72%), Gaps = 10/401 (2%)

Query: 6   ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPL 65
           + +N  ++C+PLMA++VE++LS M  AK  GAD +EIRLDC+N +    DLE +L  + L
Sbjct: 1   MAQNGFLVCSPLMAETVEEMLSQMQHAKDVGADCIEIRLDCLNGYAT-TDLEQLLKARVL 59

Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTR 125
           P ++ YR K  GG YE DE KRL+ L LA +LGAD++D EL+VA + + +      S  +
Sbjct: 60  PTIVTYRLKSEGGKYEVDEKKRLDTLRLAHELGADFIDVELQVAFDFVSRIKDKKSSNCK 119

Query: 126 FIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA 185
            IVS ++   TPS EDL +LV  MQ+TGADI+K+V +  +IT+++R+FQL+ HCQVPIIA
Sbjct: 120 IIVSNHISGRTPSTEDLSHLVVNMQSTGADILKIVTTATNITDVSRVFQLIPHCQVPIIA 179

Query: 186 YSVGERGLVSQLLSPKFNGALVYGSL----KGTPVLGLPTVESLRQTYKVEHINADTKVF 241
              G+RGL+SQLL PKF G L+YGS+      TP  G P +  L   YK+  +N+DTKVF
Sbjct: 180 CVTGDRGLISQLLGPKFGGYLIYGSIGSGKDSTP--GQPKLADLTGHYKIGRLNSDTKVF 237

Query: 242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKE 301
           G+I+ PVGHSKGPILHN  FR   +NG+YVP+ VD+L  F   YS+PDFAGFSVG P+KE
Sbjct: 238 GVIANPVGHSKGPILHNQAFRDAGFNGVYVPLLVDNLADFLKVYSAPDFAGFSVGIPHKE 297

Query: 302 AVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK-ERGYKNGTA 360
           A +  CDEV PLAQ+I AVNTI+RR SDGKLIGYNTDCE +I+AIED +K E G  N  +
Sbjct: 298 AAVTCCDEVQPLAQSIGAVNTIVRRQSDGKLIGYNTDCEGAISAIEDGLKGETGSINSGS 357

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401
           S  SPLAGR FVL GAGGAGRALAFGAK RGA V+I + ++
Sbjct: 358 S--SPLAGRTFVLVGAGGAGRALAFGAKQRGAHVIIANRNY 396

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2081036	603	MEE32 "MATERNAL EFFECT EMBRYO	0.980	0.655	0.483	8.4e-97
POMBASE|SPAC1834.02	1573	aro1 "pentafunctional aromatic	0.776	0.198	0.276	1.5e-21
CGD|CAL0004346	1551	ARO1 [Candida albicans (taxid:	0.846	0.219	0.279	6.3e-20
ASPGD|ASPL0000055969	1583	aromA [Emericella nidulans (ta	0.764	0.194	0.275	2.8e-19
TIGR_CMR|CBU_2075	233	CBU_2075 "3-dehydroquinate deh	0.491	0.849	0.280	2e-18
TIGR_CMR|CHY_0623	280	CHY_0623 "shikimate 5-dehydrog	0.300	0.432	0.380	7.7e-17
TIGR_CMR|BA_4561	308	BA_4561 "shikimate 5-dehydroge	0.277	0.363	0.370	5.7e-16
SGD|S000002534	1588	ARO1 "Pentafunctional arom pro	0.736	0.187	0.257	7.5e-15
TIGR_CMR|DET_0466	222	DET_0466 "3-dehydroquinate deh	0.468	0.851	0.270	1.2e-12
TIGR_CMR|SPO_3891	277	SPO_3891 "shikimate 5-dehydrog	0.322	0.469	0.350	3.5e-12

TAIR|locus:2081036 MEE32 "MATERNAL EFFECT EMBRYO ARREST 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 193/399 (48%), Positives = 262/399 (65%)

Query:     1 MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
             +G  +I KN ++ICAP+MA S+++++    +A   GAD+VEIRLD + +F P +DL+ I+
Sbjct:    84 IGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTII 143

Query:    61 TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
              K PLP L  YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  + K     
Sbjct:   144 KKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFI-KSIDGK 202

Query:   121 QSGT-RFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC 179
             + G  + IVS +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  
Sbjct:   203 KPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKA 262

Query:   180 QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINAD 237
             QVP I   +GERGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  D
Sbjct:   263 QVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPD 322

Query:   238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGF 297
             TKV+G+I KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   
Sbjct:   323 TKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTI 382

Query:   298 PYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKN 357
             P+KEA ++ CDEV PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  +
Sbjct:   383 PHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPS 442

Query:   358 GTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVI 396
                S  SPLA +  V+              K +GA+VVI
Sbjct:   443 SVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVI 481

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

POMBASE|SPAC1834.02 aro1 "pentafunctional aromatic polypeptide Aro1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 277 (102.6 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 93/336 (27%), Positives = 155/336 (46%)

Query:    22 VEQVLSNMYQAKAEGADVVEIRLDCI------NNFQP----GKDLEIILTKKPLPVLIVY 71
             +E  L  +      G D +E+R+D +      N         + + ++     LP++   
Sbjct:  1064 IEDALPTLRDVTV-GCDAIEVRVDYLKDPKSSNGISSLDFVAEQISLLRCSTTLPIIFTI 1122

Query:    72 RPKWAGGLYEGDEHKRLEALHL-AEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 130
             R    GGL+  D+ +  + L L A   G D+VD EL  +S  +   Y  H+  T+ I+S 
Sbjct:  1123 RTISQGGLFPNDKEEEAKELMLSAMRYGCDFVDVELGWSSETINILYQ-HKGYTKLIMSW 1181

Query:   131 NLDCETPSEEDLGYLVSRMQATG--ADIIKLVFSVNDITEIARI--FQ--LLSHCQVPII 184
             +    T S       + +++     AD+IKLV   N++ +   +  F+  + +   +P+I
Sbjct:  1182 HDLSGTWSWARPHEWMQKVELASSYADVIKLVGMANNLNDNLELEEFRTRITNSMDIPLI 1241

Query:   185 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLI 244
              +++G  G +S++L+ KF   + +  L      G  TV+ L +   +       K F L 
Sbjct:  1242 LFNMGRFGQLSRILN-KFMTPVTHPLLPSKAAPGQLTVKQLNEARVLIGEILPEKFF-LF 1299

Query:   245 SKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVM 304
              KP+ HS+ PILH+  +  +     Y     D + +     + PDF G +V  PYK +VM
Sbjct:  1300 GKPIKHSRSPILHSTAYELLGLPHTYEAFETDTVDEVQKVLNLPDFGGANVTIPYKLSVM 1359

Query:   305 KFCDEVHPLAQAIAAVNTIIRRPSDGKLI--GYNTD 338
             KF DE+   A+   AVNTII      KL+  G NTD
Sbjct:  1360 KFMDELSDEARFFGAVNTIIPIRIGDKLVLRGDNTD 1395

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)]

 Score = 265 (98.3 bits), Expect = 6.3e-20, P = 6.3e-20
 Identities = 103/369 (27%), Positives = 175/369 (47%)

Query:     3 VVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEII 59
             VV + ++  ++   L +  + +V+ ++ ++   GAD VE+R+D   +         + +I
Sbjct:  1038 VVPVGRSAAVV---LTSPDLNEVVRDL-ESITIGADAVELRVDLFKDTSAEFVAAQIAVI 1093

Query:    60 LTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE-DLGADYVDFELKVASNILGKQYS 118
                  LP++   R    GG +  +    L++L L    LG  YVD +L  A N L ++ S
Sbjct:  1094 RKHADLPIIYTVRTMSQGGKFPDENVDELKSLLLLGIRLGVAYVDLQL-TAPNELIEEIS 1152

Query:   119 SHQSGTRFIVSC-NLDCETP-SEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLL 176
             S +  TR I +  +++ E   +  +     ++  +  ADI++LV   N I +   +    
Sbjct:  1153 SKKGFTRVIGTYQDINGELKWNNVEWKNKYNQGVSMNADIVRLVGKANSIQDNLDLENFK 1212

Query:   177 SHCQV-PIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPV-LGLPTVESLRQTYKVEHI 234
                 + P+IA+++G +G +SQ+L    NG     S K  P      T+  L QTY    I
Sbjct:  1213 KQNTLKPLIAFNLGSQGKLSQVL----NGTFTPISHKLLPNDEEFLTIGELNQTYF--DI 1266

Query:   235 NADT-KVFGLISKPVGHSKGPILHNPTFRHVN--YN-GIYVPMFVDDLKKFFSTYSSPDF 290
                T K F +I  P+ HS+ P LHN  ++ +N  Y  G +    VD +  + +  + PDF
Sbjct:  1267 GGFTAKKFWVIGSPIEHSRSPNLHNAGYKALNLPYQFGRFEATDVDVV--YDNLINKPDF 1324

Query:   291 AGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEA-SITAIEDA 349
              G ++  P K  +MKF  ++   A+ I AVNT+I  P +G   G NTD    S + I   
Sbjct:  1325 GGLAITMPLKLDIMKFATKLSDAAETIGAVNTLI--PIEGGYFGDNTDWVGISNSFIRAG 1382

Query:   350 IKERGYKNG 358
             +  +   NG
Sbjct:  1383 VPPKSSSNG 1391

GO:0005829 "cytosol" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

ASPGD|ASPL0000055969 aromA [Emericella nidulans (taxid:162425)]

 Score = 260 (96.6 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 93/337 (27%), Positives = 154/337 (45%)

Query:    36 GADVVEIRLDCI-----NNFQPGKD-----LEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
             G+D VE+R+D +     NN  P  D     L  + ++  LP++   R +  GG +  + H
Sbjct:  1074 GSDAVELRVDLLKDPASNNDIPSVDYVVEQLSFLRSRVTLPIIFTIRTQSQGGRFPDNAH 1133

Query:    86 KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETP-SEEDLG 143
                LE   LA   G ++VD E+    ++L  +  +   G   I++ + D +   S  ++ 
Sbjct:  1134 DAALELYRLAFRSGCEFVDLEIAFPEDML--RAVTEMKGFSKIIASHHDPKGELSWANMS 1191

Query:   144 YLVSRMQATG-ADIIKLVF---SVNDITEIARIFQLLSHCQ-VPIIAYSVGERGLVSQLL 198
             ++    +A    DIIKLV    +++D T + +     +    VP+IA ++G++G +S++L
Sbjct:  1192 WIKFYNKALEYGDIIKLVGVARNIDDNTALRKFKNWAAEAHDVPLIAINMGDQGQLSRIL 1251

Query:   199 SPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV--FGLISKPVGHSKGPIL 256
                 NG +   S    P    P   S  +  K   +  + K   F +   P+  S+ P L
Sbjct:  1252 ----NGFMTPVSHPSLPFKAAPGQLSATEIRKGLSLMGEIKPKKFAIFGSPISQSRSPAL 1307

Query:   257 HNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA 316
             HN  F  V     Y  +   + +       SPDF G SV  P K  +M   DEV   A+ 
Sbjct:  1308 HNTLFAQVGLPHNYTRLETTNAQDVQEFIRSPDFGGASVTIPLKLDIMPLLDEVAAEAEI 1367

Query:   317 IAAVNTIIR----RPSDGKLIGYNTDCEASITAIEDA 349
             I AVNTII     + +  +L+G NTD +  I ++  A
Sbjct:  1368 IGAVNTIIPVSTGKNTPSRLVGRNTDWQGMILSLRKA 1404

GO:0070403 "NAD+ binding" evidence=IPI

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA;RCA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=RCA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=RCA;IDA

GO:0004765 "shikimate kinase activity" evidence=RCA;IDA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=RCA;IDA

GO:0009423 "chorismate biosynthetic process" evidence=IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=RCA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|CBU_2075 CBU_2075 "3-dehydroquinate dehydratase, type I" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 226 (84.6 bits), Expect = 2.0e-18, P = 2.0e-18
 Identities = 58/207 (28%), Positives = 100/207 (48%)

Query:     9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVL 68
             NT  IC  ++ +++E+ LS + +A     D VE+R+D +    P   + II        +
Sbjct:     3 NTPRICVVVIGKTLEEFLSQL-EAAQTAVDFVELRIDYLEQINPNW-VRIIKNHTHKKAI 60

Query:    69 IVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIV 128
             +  R +  GG + G    + E L    DLG DY+D +L VA+ I     S H+   + I+
Sbjct:    61 LCCRARADGGKFLGTPEAQQEILQAGNDLGFDYLDIDLPVANKI-----SIHEKKAKIII 115

Query:   129 SCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--VPIIAY 186
             S +    TP   +L +L+  M+    D+ K         ++  +F+LL + +    +I  
Sbjct:   116 SYHNFLHTPPITELNFLLENMRLFNPDVFKFATKSEQYEDVKTLFKLLINKKNNENMIVL 175

Query:   187 SVGERGLVSQLLSPKFNGALVYGSLKG 213
              +GE+G + +LLSP   G L + S+ G
Sbjct:   176 GMGEQGKIIRLLSPLLGGYLTFSSING 202

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=ISS

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=ISS

TIGR_CMR|CHY_0623 CHY_0623 "shikimate 5-dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 212 (79.7 bits), Expect = 7.7e-17, P = 7.7e-17
 Identities = 48/126 (38%), Positives = 73/126 (57%)

Query:   234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
             IN +TK+ G+I  P+ H+  P +HN  F+ +N N +Y+P+ V  + L +      + +F 
Sbjct:     3 INGETKLTGIIGYPLKHTLSPQMHNEAFKALNLNFLYLPLEVAEESLPQAIYGLKAFNFR 62

Query:   292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI-EDAI 350
             G +V  PYKE V  F DEV   A+ I AVNTI+     G+LIGYNTD    + ++ E+ +
Sbjct:    63 GINVTIPYKEKVFPFLDEVATEAKTIGAVNTIVH--DRGRLIGYNTDAPGFLLSLKENDV 120

Query:   351 KERGYK 356
             +  G K
Sbjct:   121 EVTGKK 126

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|BA_4561 BA_4561 "shikimate 5-dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 215 (80.7 bits), Expect = 5.7e-16, P = 5.7e-16
 Identities = 43/116 (37%), Positives = 68/116 (58%)

Query:   239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 296
             +++G+I  P+GHS  P++HN  F H+  +  Y    V +  L +      +   +GF+V 
Sbjct:     3 QLYGVIGNPIGHSLSPVMHNDAFEHLKMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query:   297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 352
              P+K A+M + DE+ PLA+ I AVNT++ +  DGKLIGYNTD    + A++    E
Sbjct:    63 TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQSISSE 116

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

SGD|S000002534 ARO1 "Pentafunctional arom protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 222 (83.2 bits), Expect = 7.5e-15, P = 7.5e-15
 Identities = 81/315 (25%), Positives = 144/315 (45%)

Query:    36 GADVVEIRLDCINNFQP---GKDLEIIL-TKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91
             G + VE+R+D + N+      K L I+      +P++   R    GG +  +E K L  L
Sbjct:  1099 GCEAVEVRVDHLANYSADFVSKQLSILRKATDSIPIIFTVRTMKQGGNFPDEEFKTLREL 1158

Query:    92 H-LAEDLGADYVDFELKVASNILGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRM 149
             + +A   G +++D EL + ++I   QY   ++ G   I+  + D +     D     +R 
Sbjct:  1159 YDIALKNGVEFLDLELTLPTDI---QYEVINKRGNTKIIGSHHDFQGLYSWDDAEWENRF 1215

Query:   150 -QAT--GADIIKLVFSVNDITEIARIFQLL-SHCQVPIIAYSVGERGLVSQLLSPKFNGA 205
              QA     D++K V +  +  +  R+     +H   P+IA ++  +G +S++L+      
Sbjct:  1216 NQALTLDVDVVKFVGTAVNFEDNLRLEHFRDTHKNKPLIAVNMTSKGSISRVLNNVLT-P 1274

Query:   206 LVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVN 265
             +    L  +   G  TV  + + Y       + K   ++ KP+GHS+ PILHN  +  + 
Sbjct:  1275 VTSDLLPNSAAPGQLTVAQINKMY-TSMGGIEPKELFVVGKPIGHSRSPILHNTGYEILG 1333

Query:   266 YNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTI 323
                 +     +   L K      + +F G +V  P K  +M++ DE+   A+ I AVNT+
Sbjct:  1334 LPHKFDKFETESAQLVKEKLLDGNKNFGGAAVTIPLKLDIMQYMDELTDAAKVIGAVNTV 1393

Query:   324 IRRPSDGKLIGYNTD 338
             I    + K  G NTD
Sbjct:  1394 IPL-GNKKFKGDNTD 1407

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA;IDA

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=IEA;TAS

TIGR_CMR|DET_0466 DET_0466 "3-dehydroquinate dehydratase, type I" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 55/203 (27%), Positives = 97/203 (47%)

Query:    33 KAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92
             K+EGA   E+RLD +   +  ++   +L K   P +   R    GG + G E +R+  L 
Sbjct:    21 KSEGAAFYELRLDLLG--ESWREAAAMLDK---PFMATCRRSAEGGSFSGSEEERIGLLE 75

Query:    93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQAT 152
              A   GA  +D E       LG+     ++ ++ +VS +   +TPS  DL  LV  M   
Sbjct:    76 KAAAAGAFMLDIEYSTPH--LGEVLKRLRTQSKCLVSHHNFADTPSAGDLKTLVKDMLNY 133

Query:   153 GADIIKLVFSVNDITEIARIFQLLSHCQVP---IIAYSVGERGLVSQLLSPKFNGALVYG 209
              ADI K++ +   I +  ++  L+   ++P   I+A+++G  G++S++L P       Y 
Sbjct:   134 PADIYKVITTATSINDNIKLLNLIK--EIPDKKIVAFAMGNLGILSRILCPLAGSPFTYA 191

Query:   210 SLKGT--PVLGLPTVESLRQTYK 230
             SL  +     G  T+  + + Y+
Sbjct:   192 SLNDSNQSASGQMTLAQMIEIYR 214

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|SPO_3891 SPO_3891 "shikimate 5-dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 183 (69.5 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 47/134 (35%), Positives = 66/134 (49%)

Query:   242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPY 299
             G+I  P+ HSK P LH    +    NG Y+PM V   DL +   T     F G ++  P+
Sbjct:    10 GVIGHPISHSKSPRLHGHWLKTYGINGHYIPMDVAPQDLAQVVRTLPKAGFVGVNITIPH 69

Query:   300 KEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGT 359
             KEAVM   D++   A  I AVNT+I R  DG+++  NTD    +  +         K+G 
Sbjct:    70 KEAVMSVADQITDRATLIGAVNTLIFR-EDGRILADNTDGYGFMENLRAGAPGWDPKSGP 128

Query:   360 AS-FGSPLAGRMFV 372
             A  FG+  A R  +
Sbjct:   129 AVVFGAGGAARAVI 142

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQT8	DHQSD_ARATH	1, ., 1, ., 1, ., 2, 5	0.5075	0.9826	0.6567	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.2.1.10	0.824
3rd Layer	1.1.1	0.766
3rd Layer	4.2.1	0.766
4th Layer	1.1.1.25	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00008899001	SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (519 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036740001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (456 aa)	•	•	•			•	•		0.976
	GSVIVG00005432001	SubName- Full=Chromosome undetermined scaffold_151, whole genome shotgun sequence; (278 aa)	•		•			•	•		0.937
	GSVIVG00019395001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (301 aa)	•		•			•			0.928
	GSVIVG00008901001	SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (490 aa)			•			•		•	0.903
	GSVIVG00008900001	SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (502 aa)			•			•	•	•	0.903
	GSVIVG00019835001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (495 aa)			•			•	•	•	0.902
	GSVIVG00037913001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (231 aa)						•			0.899
	GSVIVG00026409001	RecName- Full=3-phosphoshikimate 1-carboxyvinyltransferase; EC=2.5.1.19; (521 aa)	•	•				•	•		0.729
	GSVIVG00018199001	RecName- Full=Chorismate synthase; EC=4.2.3.5; (348 aa)	•		•				•		0.684
	GSVIVG00024523001	RecName- Full=Chorismate synthase; EC=4.2.3.5; (403 aa)	•		•				•		0.662

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
PLN02520	529	PLN02520, PLN02520, bifunctional 3-dehydroquinate	0.0
pfam01487	222	pfam01487, DHquinase_I, Type I 3-dehydroquinase	6e-60
COG0169	283	COG0169, AroE, Shikimate 5-dehydrogenase [Amino ac	9e-47
cd00502	225	cd00502, DHQase_I, Type I 3-dehydroquinase, (3-deh	7e-45
TIGR01093	228	TIGR01093, aroD, 3-dehydroquinate dehydratase, typ	5e-43
PRK00258	278	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewe	2e-37
TIGR00507	270	TIGR00507, aroE, shikimate 5-dehydrogenase	3e-34
PRK09310	477	PRK09310, aroDE, bifunctional 3-dehydroquinate deh	1e-32
COG0710	231	COG0710, AroD, 3-dehydroquinate dehydratase [Amino	1e-32
pfam08501	83	pfam08501, Shikimate_dh_N, Shikimate dehydrogenase	1e-25
PRK02412	253	PRK02412, aroD, 3-dehydroquinate dehydratase; Prov	2e-19
PRK12548	289	PRK12548, PRK12548, shikimate 5-dehydrogenase; Pro	6e-19
PRK12549	284	PRK12549, PRK12549, shikimate 5-dehydrogenase; Rev	5e-18
PRK12550	272	PRK12550, PRK12550, shikimate 5-dehydrogenase; Rev	1e-14
TIGR01809	282	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase	1e-14
PRK12749	288	PRK12749, PRK12749, quinate/shikimate dehydrogenas	1e-12
PRK13575	238	PRK13575, PRK13575, 3-dehydroquinate dehydratase;	6e-10
PRK14027	283	PRK14027, PRK14027, quinate/shikimate dehydrogenas	6e-09
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	0.003
cd01065	155	cd01065, NAD_bind_Shikimate_DH, NAD(P) binding dom	0.004

>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

 Score =  518 bits (1336), Expect = 0.0
 Identities = 216/398 (54%), Positives = 282/398 (70%), Gaps = 5/398 (1%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
            G   + +N T+IC P+MA SV+++L  M +AK  GAD+VEIRLD + NF P +DL+ ++
Sbjct: 13  QGSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLI 72

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
            + PLP L+ YRPKW GG YEGDE+KR +AL LA +LGADYVD ELKVA   +       
Sbjct: 73  KQSPLPTLVTYRPKWEGGQYEGDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKK 132

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
               + IVS +    TPS E+LG LV+R+QATGADI+K+  +  DIT++AR+FQ+  H Q
Sbjct: 133 PEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIATTALDITDVARMFQITVHSQ 192

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADT 238
           VP I   +GERGL+S++L PKF G L +G+L+   V   G PT++ L   Y    I  DT
Sbjct: 193 VPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQIGPDT 252

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFP 298
           KV+G+I KPVGHSK PILHN  F+ V +NG+YV + VDDL KF  TYSSPDFAGFS   P
Sbjct: 253 KVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIP 312

Query: 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 358
           +KE  +K CDEV P+A++I A+NTIIRRPSDGKL+GYNTD   +I+AIED ++       
Sbjct: 313 HKEDALKCCDEVDPIAKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLRA---SGS 369

Query: 359 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396
           + + GSPLAG++FV+ GAGGAG+ALA+GAK +GARVVI
Sbjct: 370 SPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVI 407

Length = 529

>gnl|CDD|216526 pfam01487, DHquinase_I, Type I 3-dehydroquinase

 Score =  193 bits (493), Expect = 6e-60
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 14  CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIV 70
           C P+   S+E+ L+ + +   EGAD VE+RLD + +       + L  +  K  LP++  
Sbjct: 1   CVPVTGPSLEEALAEL-EELEEGADAVELRLDLLEDVDAEDVSEQLSALREKTGLPIIFT 59

Query: 71  YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 130
            R K  GG ++G E + LE L  A  LG DY+D EL  A + L     + + GT+ I+S 
Sbjct: 60  VRTKSEGGRFDGSEEEYLELLKEALRLGPDYIDIELSSAPDELLAVIIAKKGGTKIILSY 119

Query: 131 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ---VPIIAYS 187
           +    TPS EDL  L   MQ  GADI+K+    N I ++ R+ +  S  +    P+IA S
Sbjct: 120 HDFEGTPSWEDLLSLYEEMQKLGADIVKIAVMANSIEDVLRLLRFTSEAKELDKPLIAIS 179

Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 230
           +GE G +S++L P F   L Y SL      G  T+E LR+  +
Sbjct: 180 MGELGRISRILGPVFGSVLTYASLGKASAPGQITLEELREALE 222

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyzes the trans-dehydration of 3-dehydroshikimate see pfam01220. Length = 222

>gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

 Score =  161 bits (409), Expect = 9e-47
 Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 15/168 (8%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           +N  TK+FG+I  P+ HS  P +HN  FR +  + +Y+   V  +DL +  S   +  F 
Sbjct: 2   MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFR 61

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KEA +   DE+ P A+ I AVNT++R   DGKL GYNTD          A+K
Sbjct: 62  GLNVTIPFKEAALPLLDELSPRARLIGAVNTLVRE-DDGKLRGYNTDGI----GFLRALK 116

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFD 398
           E G           + G+  ++ GAGGA RA+AF     GA R+ + +
Sbjct: 117 EFGLPV-------DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVN 157

Length = 283

>gnl|CDD|188633 cd00502, DHQase_I, Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase)

 Score =  154 bits (392), Expect = 7e-45
 Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 17/230 (7%)

Query: 12  MICAPLMA-QSVEQVLSNMYQAKAEGADVVEIRLDCINN---FQPGKDLEIILTKKPLPV 67
            IC PL     +E+ LS        GAD VE+R+D + +       + L ++    PLP+
Sbjct: 1   KICVPLTGPDLLEEALSL--LELLLGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPI 58

Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSG-TRF 126
           +   R K  GG +EG E + LE L  A  LG DYVD EL   S +L +  +S + G T+ 
Sbjct: 59  IFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELD--SALLEELINSRKKGNTKI 116

Query: 127 IVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VP 182
           I S +    TPS+E+L   + +M A GADI+K+    N I +  R+ +     +    +P
Sbjct: 117 IGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIP 176

Query: 183 IIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVESLRQTYK 230
           +IA ++GE G +S++LSP F   L Y SL     P  G  +VE L+Q   
Sbjct: 177 LIAINMGELGKLSRILSPVFGSPLTYASLPEPSAP--GQLSVEELKQALS 224

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase). Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism. Length = 225

>gnl|CDD|233268 TIGR01093, aroD, 3-dehydroquinate dehydratase, type I

 Score =  149 bits (379), Expect = 5e-43
 Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 18/232 (7%)

Query: 12  MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE-------IILTKKP 64
            I  PL A  +E+ L+   +   +GAD+VE+R+D + +     D++        +   KP
Sbjct: 1   KIFVPLTAPDLEEALATA-EKICKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKP 59

Query: 65  LPVLIVYRPKWAGGLYEGDEHKRLEALHLAED-LGADYVDFELKVASNILGKQY-SSHQS 122
           L  +   R    GG + G+E + LE L  A D  G D+VD EL +  + + +    + + 
Sbjct: 60  L--IFTIRTISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKG 117

Query: 123 GTRFIVSCNLDCE-TPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ- 180
           GT+ I+S   D + TPS E++   + +  + GADI+K+    N   ++  + ++ +    
Sbjct: 118 GTKIIMS-YHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDE 176

Query: 181 ---VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTY 229
              VP+I  S+G+RG +S++L   F   L +GSL      G  +V+ LR+  
Sbjct: 177 HADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLRELL 228

This model detects 3-dehydroquinate dehydratase, type I, either as a monofunctional protein or as a domain of a larger, multifunctional protein. It is often found fused to shikimate 5-dehydrogenase (EC 1.1.1.25), and sometimes additional domains. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by the model TIGR01088 [Amino acid biosynthesis, Aromatic amino acid family]. Length = 228

>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed

 Score =  136 bits (344), Expect = 2e-37
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 17/167 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           I   T+++ +I  P+ HSK P++HN  F+ +  +G+Y+ + V  +DL+     + +    
Sbjct: 1   ITGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGR 60

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KEA     DE+   A+ I AVNT++    DG+LIG NTD          A++
Sbjct: 61  GANVTVPFKEAAFALADELSERARLIGAVNTLVLE--DGRLIGDNTD----GIGFVRALE 114

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIF 397
           ER         G  L G+  ++ GAGGA RA+       G A + I 
Sbjct: 115 ERL--------GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIV 153

Length = 278

>gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase

 Score =  127 bits (322), Expect = 3e-34
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 17/162 (10%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 296
           K++G+I  P+ HSK P++HN  F+ +   G Y+   V  DDL+   S + +  F G +V 
Sbjct: 1   KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVT 60

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 356
            P+KE   +F DE+   A+   AVNT++    DGKL+GYNTD    ++ +E  I  R  +
Sbjct: 61  SPFKERAFQFLDEIDGRAKLAGAVNTLVLE--DGKLVGYNTDGIGLVSDLEQLIPLRPNQ 118

Query: 357 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFD 398
           N              ++ GAGGA +A+A         V+I +
Sbjct: 119 N-------------VLIIGAGGAAKAVALELLKADCNVIIAN 147

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain [Amino acid biosynthesis, Aromatic amino acid family]. Length = 270

>gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

 Score =  127 bits (322), Expect = 1e-32
 Identities = 106/395 (26%), Positives = 182/395 (46%), Gaps = 41/395 (10%)

Query: 12  MICA----PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
           M+CA    P   ++ +Q+L ++        D +E+R+D + +     +L+ ++   P+P+
Sbjct: 1   MLCATISGPSFLEAKQQILRSLKLV-----DCIELRVDLLLSLS-DLELKKLIELAPIPI 54

Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
           L   + +      +     ++    LA+ L  +Y+D +       L +    H    + I
Sbjct: 55  LTWKKHE---SCSQAAWIDKM--QSLAK-LNPNYLDIDKDFPKEALIRIRKLHPK-IKII 107

Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187
           +S +    T   ED+  L + M A+ AD  K+  S +  T++  I               
Sbjct: 108 LSYH----TSEHEDIIQLYNEMLASAADYYKIAVSSSSSTDLLNIIHQKRSLPENTTVLC 163

Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLIS 245
           +G  G  S++LSP    A  Y +  G P +  G  ++E L   Y   +++A + ++GLI 
Sbjct: 164 MGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHL-LFYNYANLSAQSPIYGLIG 222

Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYV--PMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAV 303
            PV  S   + HNP F  ++ N  Y+  P+   +L KFFST     F G SV  P K AV
Sbjct: 223 DPVDRSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAV 282

Query: 304 MKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFG 363
           + F D++ P  +   + NT++ R  +GK+ GYNTD E   + ++        KN      
Sbjct: 283 LDFLDKLDPSVKLCGSCNTLVFR--NGKIEGYNTDGEGLFSLLKQ-------KN------ 327

Query: 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFD 398
            PL  +   + GAGGA +A+A      GA ++IF+
Sbjct: 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFN 362

Length = 477

>gnl|CDD|223782 COG0710, AroD, 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

 Score =  122 bits (308), Expect = 1e-32
 Identities = 56/231 (24%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 11  TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCI-NNFQPGKDLEIILTKKP-LPVL 68
             I  P++   + ++     ++K   AD+VE+R+D + +N +  +  + +  K P  P++
Sbjct: 2   PKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLI 61

Query: 69  IVYRPKWAGGLYEGDEHKRLEALH-LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
             +R    GG + G E + +E L  LAE  G DY+D EL    + + +     +     I
Sbjct: 62  FTFRTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKK-HGVI 120

Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQV---PII 184
           VS +   +TP  E++   + +M++ GADI+K+        ++  + +     +    P+I
Sbjct: 121 VSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVI 180

Query: 185 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 235
             S+G+ G +S++  P F   + Y SL      G  +V+ LR+   +    
Sbjct: 181 TISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQISVDELRKILTLLGYI 231

Length = 231

>gnl|CDD|149523 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate binding domain

 Score = 98.4 bits (246), Expect = 1e-25
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYK 300
           LI  P+ HS  P++HN  F+ +  NG+YV   V  D+L +F     +  F G +V  P+K
Sbjct: 1   LIGNPISHSLSPLIHNAAFKALGLNGVYVAFEVPPDNLPEFVEGLRALGFRGLNVTIPHK 60

Query: 301 EAVMKFCDEVHPLAQAIAAVNTI 323
           EA +   DE+ P A+ I AVNTI
Sbjct: 61  EAAIPLLDELSPEAKRIGAVNTI 83

This domain is the substrate binding domain of shikimate dehydrogenase. Length = 83

>gnl|CDD|235036 PRK02412, aroD, 3-dehydroquinate dehydratase; Provisional

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 56/244 (22%), Positives = 112/244 (45%), Gaps = 28/244 (11%)

Query: 4   VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT-- 61
           + I +    I  P+M +++E+VL+         AD++E R D     +   D+E +L   
Sbjct: 9   LVIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRAD---FLEKISDVESVLAAA 65

Query: 62  ---KKPL---PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA-DYVDFELKVASNILG 114
              ++     P+L  +R    GG     + + L  +      G  DY+D EL    +++ 
Sbjct: 66  PAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVK 125

Query: 115 KQYS-SHQSGTRFIVSC-NLDCETPSEEDLGYLVSRMQATGADIIKL---------VFSV 163
           +  + +H+ G + ++S  + + +TP +E++   + +M++ GADI+K+         V ++
Sbjct: 126 EMVAFAHEHGVKVVLSYHDFE-KTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTL 184

Query: 164 NDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVE 223
            + T   +          P+I  S+G+ G +S+L    F  +  + SL      G  +VE
Sbjct: 185 LNATREMKELYA----DQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVE 240

Query: 224 SLRQ 227
            LR+
Sbjct: 241 DLRR 244

Length = 253

>gnl|CDD|183585 PRK12548, PRK12548, shikimate 5-dehydrogenase; Provisional

 Score = 85.9 bits (213), Expect = 6e-19
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVP--MFVDDLKKFFSTYSSPDFA 291
           I+  T + GLI  PVGHS  P ++N +F+    +  Y+   + VD +        + +  
Sbjct: 5   ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMR 64

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P K    K+ DE+ P A+ I AVNTI+    DGKL G+ TD    +  + +   
Sbjct: 65  GANVTMPCKSEAAKYMDELSPAARIIGAVNTIVN--DDGKLTGHITDGLGFVRNLREH-- 120

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDI 399
                      G  + G+   + GAGGA  A+       GA+ + IF+I
Sbjct: 121 -----------GVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI 158

Length = 289

>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed

 Score = 83.0 bits (206), Expect = 5e-18
 Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 24/116 (20%)

Query: 290 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDC----EASITA 345
           FAG ++  P K+AV+   DE+   A+A+ AVNT++ R  DG+ IG+NTD     E+    
Sbjct: 64  FAGLNITHPCKQAVIPHLDELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRG 121

Query: 346 IEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400
           + DA  ER                  V  GAGGAG A+A    + G  R+ IFD+D
Sbjct: 122 LPDASLERV-----------------VQLGAGGAGAAVAHALLTLGVERLTIFDVD 160

Length = 284

>gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 19/165 (11%)

Query: 233 HINADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFA 291
            IN DT++   L ++P     G   HN  +  +  N +Y      DL        +    
Sbjct: 4   MINKDTQLCISLAARPSNF--GTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIR 61

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KEAV+   DE+ P AQAI +VNTI+   +DG L  YNTD      AI   + 
Sbjct: 62  GCAVSMPFKEAVIPLVDELDPSAQAIESVNTIVN--TDGHLKAYNTD----YIAIAKLLA 115

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396
                                L G+GG  +A+A   +  G     
Sbjct: 116 SYQVPPDLV----------VALRGSGGMAKAVAAALRDAGFTDGT 150

Length = 272

>gnl|CDD|233580 TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 50/156 (32%), Positives = 68/156 (43%), Gaps = 16/156 (10%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD---LKKFFSTYSSPDFAGFSV 295
           K   +I KP+ HS+ P LHN  +  +                LK+  S +  P F G SV
Sbjct: 6   KKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASV 64

Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 355
             P K A+++F DE    A  I +VNT++R   +G   G NTD       I  A+   G 
Sbjct: 65  TIPLKFAILRFADEHTDRASLIGSVNTLLRT-QNGIWKGDNTD----WDGIAGALANIGK 119

Query: 356 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391
                    PLAG   ++ GAGG  RA  +   S G
Sbjct: 120 F-------EPLAGFRGLVIGAGGTSRAAVYALASLG 148

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway [Amino acid biosynthesis, Aromatic amino acid family]. Length = 282

>gnl|CDD|183721 PRK12749, PRK12749, quinate/shikimate dehydrogenase; Reviewed

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 17/164 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 291
           + A  ++ GL++ P+ HS  P + N           Y+   VD+           +    
Sbjct: 3   VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMR 62

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I     AIK
Sbjct: 63  GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIR----AIK 116

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV 395
           E G+          + G+  VL GAGGA  A+       G + +
Sbjct: 117 ESGFD---------IKGKTMVLLGAGGASTAIGAQGAIEGLKEI 151

Length = 288

>gnl|CDD|184156 PRK13575, PRK13575, 3-dehydroquinate dehydratase; Provisional

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 15/191 (7%)

Query: 38  DVVEIRLDCINNFQPGKDLEIILTK-----KPLPVLIVYRPKWAGGLYEGDEHKRLEAL- 91
           D++E+R+D   N      L  ++TK         +L+ YR K  GG  +      L  L 
Sbjct: 32  DIIELRIDQWENVTV-DQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFTNDLYLNLLS 90

Query: 92  HLAEDLGADYVDFELKVASNILGKQY---SSHQSGTRFIVSCNLDCETPSEEDLGYLVSR 148
            LA   G D +D E +   +I   Q       Q     ++S +    TP  ++L ++  +
Sbjct: 91  DLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFK 150

Query: 149 MQATGADIIKLVFSVNDITEIARIFQLLS----HCQVPIIAYSVGERGLVSQLLSPKFNG 204
           MQ    + +KL    ++  ++  + Q +S         ++  S+ + GL+S+     F G
Sbjct: 151 MQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGG 210

Query: 205 ALVYGSLKGTP 215
           AL YG + G P
Sbjct: 211 ALSYGCI-GEP 220

Length = 238

>gnl|CDD|172521 PRK14027, PRK14027, quinate/shikimate dehydrogenase; Provisional

 Score = 56.6 bits (136), Expect = 6e-09
 Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 22/174 (12%)

Query: 235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIY--VPMFVD-----DLKKFFSTYSS 287
             D+ + GLI + +  S+ P +H           +Y  +          DLK        
Sbjct: 1   MNDSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALY 60

Query: 288 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
             F G ++  PYK+AV+   DEV   A  + AVNT++   + G   G+NTD       +E
Sbjct: 61  LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVSGFGRGME 119

Query: 348 DAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400
           +     G  N              V  GAGG G A+A+   + G  ++ + D+D
Sbjct: 120 E-----GLPNAKLD--------SVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160

Length = 283

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 365 PLAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDID 400
           PLAG++  V   AGG G+A A    + GA VV+ D+D
Sbjct: 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLD 455

Length = 681

>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate dehydrogenase

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)

Query: 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVV 395
           TD          A++E          G  L G+  ++ GAGGA RA+A+     GA ++V
Sbjct: 1   TD----GLGFVRALEE---------AGIELKGKKVLILGAGGAARAVAYALAELGAAKIV 47

Query: 396 IFD 398
           I +
Sbjct: 48  IVN 50

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DHs, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	100.0
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	100.0
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	100.0
TIGR01093	228	aroD 3-dehydroquinate dehydratase, type I. Type II	100.0
COG0710	231	AroD 3-dehydroquinate dehydratase [Amino acid tran	100.0
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	100.0
cd00502	225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	100.0
PRK13575	238	3-dehydroquinate dehydratase; Provisional	100.0
PRK13576	216	3-dehydroquinate dehydratase; Provisional	100.0
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	100.0
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	100.0
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	100.0
PRK01261	229	aroD 3-dehydroquinate dehydratase; Provisional	100.0
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	100.0
PRK12548	289	shikimate 5-dehydrogenase; Provisional	100.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	100.0
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	100.0
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	100.0
KOG0692	595	consensus Pentafunctional AROM protein [Amino acid	99.96
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	99.95
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.79
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.52
PRK08291	330	ectoine utilization protein EutC; Validated	98.49
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.33
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.13
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.72
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.52
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.5
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.27
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.07
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.64
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	96.64
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.58
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.52
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.46
PRK11572	248	copper homeostasis protein CutC; Provisional	96.33
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.3
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.29
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.26
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.24
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	96.22
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.21
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.19
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	96.02
PLN00203	519	glutamyl-tRNA reductase	95.95
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.94
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	95.83
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.61
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	95.58
PRK08328	231	hypothetical protein; Provisional	95.49
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.31
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.3
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	95.28
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	95.26
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.25
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.22
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	95.15
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	95.14
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	95.14
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.05
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.03
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.01
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	95.0
PRK06141	314	ornithine cyclodeaminase; Validated	94.86
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.75
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.73
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.71
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.69
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	94.68
PRK12330	499	oxaloacetate decarboxylase; Provisional	94.55
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	94.47
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	94.44
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.32
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	94.3
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	94.29
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.28
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.21
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.08
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.07
PRK12331	448	oxaloacetate decarboxylase; Provisional	94.06
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.04
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.0
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	93.94
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	93.94
PRK07340	304	ornithine cyclodeaminase; Validated	93.84
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.82
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	93.76
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.76
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.73
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	93.7
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	93.67
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.64
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.63
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	93.62
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.59
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	93.59
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	93.56
PRK08618	325	ornithine cyclodeaminase; Validated	93.55
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	93.53
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	93.5
PRK06153	393	hypothetical protein; Provisional	93.49
PTZ00075	476	Adenosylhomocysteinase; Provisional	93.48
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	93.41
PRK08223	287	hypothetical protein; Validated	93.41
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	93.34
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.3
PLN02494	477	adenosylhomocysteinase	93.25
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.13
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	93.04
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	92.98
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	92.97
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	92.95
PRK05866	293	short chain dehydrogenase; Provisional	92.9
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	92.89
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.89
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.88
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.74
PRK09282	592	pyruvate carboxylase subunit B; Validated	92.74
PLN02591	250	tryptophan synthase	92.71
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	92.68
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	92.68
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	92.54
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.45
PRK06196	315	oxidoreductase; Provisional	92.43
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.35
PRK12779	944	putative bifunctional glutamate synthase subunit b	92.24
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.24
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	92.21
PLN02780	320	ketoreductase/ oxidoreductase	92.15
PRK14041	467	oxaloacetate decarboxylase; Provisional	92.04
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.02
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.01
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.91
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	91.85
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	91.74
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	91.72
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.71
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	91.68
PLN02928	347	oxidoreductase family protein	91.67
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	91.54
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	91.47
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.46
PRK06567	1028	putative bifunctional glutamate synthase subunit b	91.45
PRK07411	390	hypothetical protein; Validated	91.27
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	91.27
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	91.24
PRK13243	333	glyoxylate reductase; Reviewed	91.23
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	91.21
PRK14040	593	oxaloacetate decarboxylase; Provisional	91.2
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	91.17
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	91.16
PRK14031	444	glutamate dehydrogenase; Provisional	91.15
PRK07226	267	fructose-bisphosphate aldolase; Provisional	91.14
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	91.12
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	91.1
PLN02852	491	ferredoxin-NADP+ reductase	91.05
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.05
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	91.03
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	91.03
PRK12831	464	putative oxidoreductase; Provisional	90.91
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	90.89
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	90.88
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	90.88
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	90.88
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	90.88
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.83
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	90.82
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.68
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.62
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	90.6
PLN03209	576	translocon at the inner envelope of chloroplast su	90.54
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	90.52
PRK12480	330	D-lactate dehydrogenase; Provisional	90.5
PLN02334	229	ribulose-phosphate 3-epimerase	90.49
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	90.49
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	90.41
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	90.38
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	90.33
PRK06701	290	short chain dehydrogenase; Provisional	90.33
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	90.32
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	90.26
PRK07226	267	fructose-bisphosphate aldolase; Provisional	90.17
PRK14982	340	acyl-ACP reductase; Provisional	90.16
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	90.1
PRK12814	652	putative NADPH-dependent glutamate synthase small	90.06
KOG1208	314	consensus Dehydrogenases with different specificit	90.04
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	89.96
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	89.82
PRK07985	294	oxidoreductase; Provisional	89.79
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	89.79
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	89.78
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	89.77
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	89.73
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	89.65
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	89.57
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	89.51
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	89.45
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.39
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	89.11
cd08205	367	RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l	89.05
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	89.05
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	88.94
PLN02477	410	glutamate dehydrogenase	88.91
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	88.9
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	88.86
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	88.78
PRK12581	468	oxaloacetate decarboxylase; Provisional	88.77
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	88.76
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	88.69
KOG3040	262	consensus Predicted sugar phosphatase (HAD superfa	88.67
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	88.65
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	88.63
PRK14851	679	hypothetical protein; Provisional	88.59
PRK06128	300	oxidoreductase; Provisional	88.42
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	88.4
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	88.22
PRK06436	303	glycerate dehydrogenase; Provisional	88.19
PRK13984	604	putative oxidoreductase; Provisional	88.15
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	88.15
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	87.92
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	87.9
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	87.84
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	87.8
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	87.79
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	87.68
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	87.68
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	87.66
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	87.6
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	87.6
PLN02985	514	squalene monooxygenase	87.25
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	87.24
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	87.2
PRK05562	223	precorrin-2 dehydrogenase; Provisional	87.17
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	87.15
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	87.11
PLN02463	447	lycopene beta cyclase	87.03
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	87.0
COG3142	241	CutC Uncharacterized protein involved in copper re	86.99
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	86.96
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	86.93
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.69
PRK08324	681	short chain dehydrogenase; Validated	86.66
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	86.51
PRK07574	385	formate dehydrogenase; Provisional	86.5
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	86.44
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	86.42
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	86.41
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	86.4
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	86.19
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	86.19
PTZ00245	287	ubiquitin activating enzyme; Provisional	86.18
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	86.17
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	86.16
PRK08605	332	D-lactate dehydrogenase; Validated	86.11
PRK14852	989	hypothetical protein; Provisional	86.09
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	86.01
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	85.99
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	85.92
PRK11613	282	folP dihydropteroate synthase; Provisional	85.91
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	85.89
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	85.85
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	85.85
PRK13523	337	NADPH dehydrogenase NamA; Provisional	85.81
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	85.73
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	85.68
PRK06484	520	short chain dehydrogenase; Validated	85.67
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	85.64
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	85.63
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	85.54
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	85.51
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	85.48
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	85.46
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	85.3
PRK14030	445	glutamate dehydrogenase; Provisional	85.26
PRK09414	445	glutamate dehydrogenase; Provisional	85.21
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	85.09
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	84.98
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	84.98
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	84.96
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	84.9
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	84.84
PRK06487	317	glycerate dehydrogenase; Provisional	84.8
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	84.77
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	84.75
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	84.66
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	84.66
PLN03139	386	formate dehydrogenase; Provisional	84.55
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	84.51
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	84.41
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	84.31
PLN02686	367	cinnamoyl-CoA reductase	84.26
PRK05855	582	short chain dehydrogenase; Validated	84.25
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	84.25
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	84.24
PTZ00188	506	adrenodoxin reductase; Provisional	84.02
PRK06932	314	glycerate dehydrogenase; Provisional	83.99
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	83.96
PLN02602	350	lactate dehydrogenase	83.74
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	83.67
PRK14042	596	pyruvate carboxylase subunit B; Provisional	83.62
PRK07201	657	short chain dehydrogenase; Provisional	83.59
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	83.54
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	83.36
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	83.36
PRK12999	1146	pyruvate carboxylase; Reviewed	83.25
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	83.22
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	83.22
PLN02256	304	arogenate dehydrogenase	83.16
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	83.01
PTZ00367	567	squalene epoxidase; Provisional	83.0
PF04551	359	GcpE: GcpE protein; InterPro: IPR004588 This prote	82.94
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.85
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	82.78
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	82.7
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	82.68
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	82.56
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	82.53
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	82.5
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	82.49
PLN02740	381	Alcohol dehydrogenase-like	82.47
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	82.26
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	82.18
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	82.12
PRK08294	634	phenol 2-monooxygenase; Provisional	82.11
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	81.98
PRK06046	326	alanine dehydrogenase; Validated	81.95
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	81.69
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	81.55
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	81.45
COG0281	432	SfcA Malic enzyme [Energy production and conversio	81.4
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	81.4
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	81.38
TIGR00190	423	thiC thiamine biosynthesis protein ThiC. The thiC	81.23
PRK10569	191	NAD(P)H-dependent FMN reductase; Provisional	81.15
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	81.13
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	81.08
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	80.77
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	80.76
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	80.7
PLN02586	360	probable cinnamyl alcohol dehydrogenase	80.69
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	80.65
PRK13352	431	thiamine biosynthesis protein ThiC; Provisional	80.65
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	80.35
PRK04148	134	hypothetical protein; Provisional	80.3
PLN02661	357	Putative thiazole synthesis	80.03
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	80.01

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=100.00  E-value=8.3e-99  Score=785.52  Aligned_cols=396  Identities=54%  Similarity=0.932  Sum_probs=360.8

Q ss_pred             ccCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCC
Q 015614            4 VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGD   83 (403)
Q Consensus         4 ~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~   83 (403)
                      --|.+++|+||+|+++++.+|++.+++.+...++|+||||+|+|.+.++.+++..+++..++|+|||+|+++|||.++.+
T Consensus        16 ~~~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~eGG~~~~~   95 (529)
T PLN02520         16 GGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKWEGGQYEGD   95 (529)
T ss_pred             cccccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHHHCCCCCCC
Confidence            35778899999999999999999999888778999999999999976655677777777799999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614           84 EHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus        84 ~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~  163 (403)
                      +++|+++|+.+++.|+||||||+...++..+.+...++.++|+|+|||||++||+.+++.+++++|+++||||+|||+||
T Consensus        96 ~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaDi~Kia~~~  175 (529)
T PLN02520         96 ENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIATTA  175 (529)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEecCC
Confidence            99999999999999999999999998866655555666899999999999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccC--CCCCCCCCCHHHHHhhhhhccccccceEE
Q 015614          164 NDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLK--GTPVLGLPTVESLRQTYKVEHINADTKVF  241 (403)
Q Consensus       164 ~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~--~~sApGQ~~~~~l~~~~~~~~~~~~~~~~  241 (403)
                      ++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++  .++||||++++++++++++.++..++++|
T Consensus       176 ~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~t~~~  255 (529)
T PLN02520        176 LDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQIGPDTKVY  255 (529)
T ss_pred             CCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhcccCCceEE
Confidence            9999999999988778899999999999999999999999999999987  45999999999999999999999889999


Q ss_pred             eeeccCCcccCCHHHHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhhcccee
Q 015614          242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVN  321 (403)
Q Consensus       242 ~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavN  321 (403)
                      ||+|+||+||+||.|||++|+++|+|+.|.++++++++++++.++..+|.|+|||||||+++++|+|++|+.|+.|||||
T Consensus       256 ~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~A~~iGAVN  335 (529)
T PLN02520        256 GIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPIAKSIGAIN  335 (529)
T ss_pred             EEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHHHHHhCCce
Confidence            99999999999999999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             EEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          322 TIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       322 Ti~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ||++++++|+|+||||||.||+.+|++.+...+..   +..+...++|+++|+|+||+|||++++|.++|++|+++||+.
T Consensus       336 Tvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~---~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~  412 (529)
T PLN02520        336 TIIRRPSDGKLVGYNTDYIGAISAIEDGLRASGSS---PASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY  412 (529)
T ss_pred             EEEEeCCCCEEEEEcccHHHHHHHHHhhhcccccc---cccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            99986227999999999999999998643200000   001234678999999999999999999999999999999985


Q ss_pred             C
Q 015614          402 G  402 (403)
Q Consensus       402 ~  402 (403)
                      +
T Consensus       413 e  413 (529)
T PLN02520        413 E  413 (529)
T ss_pred             H
Confidence            4

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=100.00  E-value=2.1e-88  Score=699.80  Aligned_cols=362  Identities=27%  Similarity=0.452  Sum_probs=329.7

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      |||+||++++.+|++.+++.+. .++|+||||+|+|.+.+.. .+..+++..+.|++ |+|+++     ++++++|+++|
T Consensus         1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~-~~~~l~~~~~~pil-T~R~~~-----~~~~~~~~~~l   72 (477)
T PRK09310          1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDL-ELKKLIELAPIPIL-TWKKHE-----SCSQAAWIDKM   72 (477)
T ss_pred             CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHH-HHHHHHhcCCCceE-EeccCc-----cCCHHHHHHHH
Confidence            6999999999999999998875 7799999999999876544 37777765566766 999987     45889999999


Q ss_pred             HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHH
Q 015614           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIAR  171 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~  171 (403)
                      +.++++|+||||||++..++.++++... ++++|+|+|||||+    .+++.+++++|+++||||+|||+||++.+|+++
T Consensus        73 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~----~~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~  147 (477)
T PRK09310         73 QSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSE----HEDIIQLYNEMLASAADYYKIAVSSSSSTDLLN  147 (477)
T ss_pred             HHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCC----cchHHHHHHHHHHcCCCEEEEeeCCCCHHHHHH
Confidence            9999999999999999988887777544 45999999999994    267999999999999999999999999999999


Q ss_pred             HHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCC--CCCCCCCCHHHHHhhhhhccccccceEEeeeccCCc
Q 015614          172 IFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG  249 (403)
Q Consensus       172 ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~--~sApGQ~~~~~l~~~~~~~~~~~~~~~~~liG~pi~  249 (403)
                      +++++.....|+|+|+||+.|++||+++++|||++||+++..  ++||||++++++. .|++.+++.++++|||+|+||+
T Consensus       148 ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~pi~  226 (477)
T PRK09310        148 IIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVD  226 (477)
T ss_pred             HHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCCcc
Confidence            999988888899999999999999999999999999999765  4799999999998 5688888888999999999999


Q ss_pred             ccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhhccceeEEEEec
Q 015614          250 HSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRP  327 (403)
Q Consensus       250 hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~  327 (403)
                      ||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||+++++|+|++|+.|+.+||||||+++ 
T Consensus       227 hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~~-  305 (477)
T PRK09310        227 RSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR-  305 (477)
T ss_pred             cccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEee-
Confidence            99999999999999999999999988  479999999988999999999999999999999999999999999999987 


Q ss_pred             cCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          328 SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       328 ~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                       +|+|+||||||.||+.+|++.             +...++++++|+|+||+|++++++|.+.|++|+++||+.+
T Consensus       306 -~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~  366 (477)
T PRK09310        306 -NGKIEGYNTDGEGLFSLLKQK-------------NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKA  366 (477)
T ss_pred             -CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence             999999999999999999753             1345688999999999999999999999999999999854

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=2.4e-54  Score=412.42  Aligned_cols=229  Identities=24%  Similarity=0.393  Sum_probs=206.8

Q ss_pred             cCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCch----HHHHHHhcC-CCcEEEEeecCCCCCC
Q 015614            5 NITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK----DLEIILTKK-PLPVLIVYRPKWAGGL   79 (403)
Q Consensus         5 ~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~----~l~~l~~~~-~~PiI~T~R~~~eGG~   79 (403)
                      .+..++|+||+||.+++.+|++++++++...++|+||||+|+|.+.+..+    .+..+++.. ++|+|||+|+++|||.
T Consensus        10 ~~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~   89 (253)
T PRK02412         10 VIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGE   89 (253)
T ss_pred             EeCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCC
Confidence            45678999999999999999999998887789999999999998754322    334455543 6899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC-CcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614           80 YEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      ++.++++|+++|+.+++.| +||||||++.+.+.++++. ..++.++++|+|||+|++||+.+++.+++++|+++||||+
T Consensus        90 ~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDiv  169 (253)
T PRK02412         90 IALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIV  169 (253)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEE
Confidence            9999999999999999999 9999999999887777776 3456899999999999999999999999999999999999


Q ss_pred             EEEeecCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614          158 KLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       158 Kia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~  232 (403)
                      |+|+++++.+|++++++++.+     .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++|+.+
T Consensus       170 Kia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~sAPGQ~~~~el~~i~~~l  249 (253)
T PRK02412        170 KIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVEDLRRILEIL  249 (253)
T ss_pred             EEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCCCCCCCCCHHHHHHHHHHh
Confidence            999999999999999998753     468999999999999999999999999999999999999999999999999865


Q ss_pred             c
Q 015614          233 H  233 (403)
Q Consensus       233 ~  233 (403)
                      +
T Consensus       250 ~  250 (253)
T PRK02412        250 H  250 (253)
T ss_pred             c
Confidence            4

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I

Probab=100.00  E-value=5.5e-53  Score=397.71  Aligned_cols=217  Identities=29%  Similarity=0.502  Sum_probs=193.8

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHH----HHHh-cCCCcEEEEeecCCCCCCCCCCHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE----IILT-KKPLPVLIVYRPKWAGGLYEGDEHK   86 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~----~l~~-~~~~PiI~T~R~~~eGG~~~~~~~~   86 (403)
                      +||+|+++++.+|+..+++++ ..|||+||||+|+|.+..+.+.+.    .++. ..++|+|||+|+++|||.++.++++
T Consensus         1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~   79 (228)
T TIGR01093         1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEE   79 (228)
T ss_pred             CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence            589999999999999999987 789999999999998654322222    2221 1478999999999999999999999


Q ss_pred             HHHHHHHH-HHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015614           87 RLEALHLA-EDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (403)
Q Consensus        87 ~~~ll~~~-~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~  164 (403)
                      |+++++.+ .+.++||||||++.+++..++++ ..+++++|||+|||||++||+++++.+++++|+++||||+|+|++++
T Consensus        80 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~  159 (228)
T TIGR01093        80 YLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN  159 (228)
T ss_pred             HHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence            99999998 57779999999999888777776 34678999999999999999999999999999999999999999999


Q ss_pred             CHhHHHHHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhh
Q 015614          165 DITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTY  229 (403)
Q Consensus       165 ~~~D~~~ll~~~~~~----~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~  229 (403)
                      +.+|++++++++.+.    ++|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++|
T Consensus       160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~  228 (228)
T TIGR01093       160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLRELL  228 (228)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhhC
Confidence            999999999997553    57999999999999999999999999999999999999999999999864

Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.

>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.4e-53  Score=391.19  Aligned_cols=222  Identities=23%  Similarity=0.384  Sum_probs=200.2

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHH
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      .|+||+|+.+.+.+++..+++.+...++|++|||+|+|... +..+....+++. ...|+|||+|+.+|||.|+.++++|
T Consensus         1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~   80 (231)
T COG0710           1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEY   80 (231)
T ss_pred             CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHH
Confidence            48999999999999999999999999999999999999921 112344455544 3679999999999999999999999


Q ss_pred             HHHHHHHHHcC-CcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015614           88 LEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI  166 (403)
Q Consensus        88 ~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~  166 (403)
                      +++++.+++.+ ++|||||+.++.+..++++..+ ...++|+|||||++||+++++.+++.+|.++|+||+|+|+||++.
T Consensus        81 i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~-~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~  159 (231)
T COG0710          81 IELLKKLAELNGPDYIDIELSSPEDDVKEIIKFA-KKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSK  159 (231)
T ss_pred             HHHHHHHHhhcCCCEEEEEccCcchhHHHHHhcc-ccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCH
Confidence            99999999986 9999999999987777776443 333499999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcc---CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614          167 TEIARIFQLLSH---CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       167 ~D~~~ll~~~~~---~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~  232 (403)
                      +|++++++++..   .+.|+|+||||..|++||+++++|||++||+++.+++||||++++++++++..+
T Consensus       160 ~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~sAPGQi~v~~l~~~~~~l  228 (231)
T COG0710         160 EDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQISVDELRKILTLL  228 (231)
T ss_pred             HHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCCCCCCCCCHHHHHHHHHHh
Confidence            999999999876   689999999999999999999999999999999999999999999999998754

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=100.00  E-value=5.5e-53  Score=396.73  Aligned_cols=217  Identities=34%  Similarity=0.560  Sum_probs=186.2

Q ss_pred             EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (403)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (403)
                      ||||+++|.+|++++++++...|+|+||||+|+|.+.+.   .++++.+|+..++|+|||+|+++|||.++.++++|+++
T Consensus         1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l   80 (224)
T PF01487_consen    1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL   80 (224)
T ss_dssp             EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred             CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence            999999999999999999866699999999999996322   46788888888999999999999999999999999999


Q ss_pred             HHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHH
Q 015614           91 LHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIA  170 (403)
Q Consensus        91 l~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~  170 (403)
                      |+.+++.|++|||||++..++........+.+++|||+|||||++||+++++.+++++|.++||||+|+|+++++.+|++
T Consensus        81 l~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~  160 (224)
T PF01487_consen   81 LERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVL  160 (224)
T ss_dssp             HHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHH
T ss_pred             HHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHH
Confidence            99999999999999999655543333334578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhh
Q 015614          171 RIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK  230 (403)
Q Consensus       171 ~ll~~~~~~----~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~  230 (403)
                      ++++++.+.    +.|+|+|+||+.|++||+++++|||++||++..+++||||+++++|+++|+
T Consensus       161 ~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~sApGQl~~~~l~~~~~  224 (224)
T PF01487_consen  161 RLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEASAPGQLTLEELREILH  224 (224)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS-SSTT-EBHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCCCCCCCCcHHHHHHHhC
Confidence            999997654    589999999999999999999999999999888899999999999999874

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase

Probab=100.00  E-value=4.2e-51  Score=384.25  Aligned_cols=215  Identities=36%  Similarity=0.562  Sum_probs=194.1

Q ss_pred             eEEEecccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCCC---CchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH
Q 015614           12 MICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQ---PGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus        12 ~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      +||+||.++ +.+|..++++..  .|+|+||||+|+|....   ..++++.+++..+.|+|||+|+++|||.++.++++|
T Consensus         1 ~i~~~i~~~~~~~e~~~~~~~~--~~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~   78 (225)
T cd00502           1 KICVPLTGPDLLEEALSLLELL--LGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEY   78 (225)
T ss_pred             CEEEEecCCCCHHHHHHHHHHh--cCCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHH
Confidence            589999999 999998877664  28999999999998752   245777888777899999999999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015614           88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI  166 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~  166 (403)
                      +++++.++++|++|||||++. + ..++++ ..+++++|||+|||+|++||+.+++.+++++|.++||||+|+|+++++.
T Consensus        79 ~~ll~~~~~~~~d~vDiEl~~-~-~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~  156 (225)
T cd00502          79 LELLEEALKLGPDYVDIELDS-A-LLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSI  156 (225)
T ss_pred             HHHHHHHHHHCCCEEEEEecc-h-HHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence            999999999999999999988 3 333444 4456899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhh
Q 015614          167 TEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK  230 (403)
Q Consensus       167 ~D~~~ll~~~~~~----~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~  230 (403)
                      +|++++++++.+.    +.|+|+|+||+.|++||++++.|||++||+++++++||||+++++|+++|+
T Consensus       157 ~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~~  224 (225)
T cd00502         157 EDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEPSAPGQLSVEELKQALS  224 (225)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCCCCCCCcCHHHHHHHHh
Confidence            9999999997654    469999999999999999999999999999999999999999999998875

) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.

>PRK13575 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=5.2e-50  Score=378.15  Aligned_cols=219  Identities=20%  Similarity=0.339  Sum_probs=185.2

Q ss_pred             eeEEEecccCC-HHHH-HHHHHHHHhcCCCEEEEEecCCCCCCCchHHH----HHHhc-CCCcEEEEeecCCCCCCCCCC
Q 015614           11 TMICAPLMAQS-VEQV-LSNMYQAKAEGADVVEIRLDCINNFQPGKDLE----IILTK-KPLPVLIVYRPKWAGGLYEGD   83 (403)
Q Consensus        11 ~~icv~l~~~~-~~e~-~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~----~l~~~-~~~PiI~T~R~~~eGG~~~~~   83 (403)
                      +.|++++.... +++. .+.++.. ..+||+||||+|+|.+.+. +++.    .+++. .++|+|||+|+++|||.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~-~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~~   81 (238)
T PRK13575          4 VEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTV-DQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFT   81 (238)
T ss_pred             eeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCH-HHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCCC
Confidence            45667776554 5565 4455543 5789999999999987543 2343    33332 478999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC-CcEEEEeccc--cchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           84 EHKRLEALHLAEDLG-ADYVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        84 ~~~~~~ll~~~~~~g-~~yvDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +++|+++++.++..+ +||||||+..  ..+..+++. ..++.++++|+|||||++||+.+++.+++++|+++||||+|+
T Consensus        82 ~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~Ki  161 (238)
T PRK13575         82 NDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVKL  161 (238)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence            999999998888776 8999999986  334445554 345678999999999999999999999999999999999999


Q ss_pred             EeecCCHhHHHHHHHHhcc----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhh
Q 015614          160 VFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV  231 (403)
Q Consensus       160 a~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~  231 (403)
                      |+||++.+|+++|++++.+    .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|++++++
T Consensus       162 Av~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~sAPGQi~v~~l~~i~~~  237 (238)
T PRK13575        162 AVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEPQAPGQIHVTDLKAQVTL  237 (238)
T ss_pred             EecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCCCCCCCCCHHHHHHHHHh
Confidence            9999999999999999754    36799999999999999999999999999999999999999999999998863

>PRK13576 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=7.8e-49  Score=363.77  Aligned_cols=204  Identities=18%  Similarity=0.165  Sum_probs=174.9

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL   88 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (403)
                      |+|+||+|+++++.+++..+.+.   .+||+||||+|+|.+....  +..+.+....|+|||+|+++|||.++.++++|+
T Consensus         1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~~~~r~   75 (216)
T PRK13576          1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELDDELKI   75 (216)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCCHHHHH
Confidence            68999999999999999887543   5899999999999875432  233333445799999999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH-h
Q 015614           89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI-T  167 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~-~  167 (403)
                      ++|+.+++.+. ++|||+....+..       ..+.++|+|||||++||+.+++.+++.+|.+ ||||+|+|+||++. .
T Consensus        76 ~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~~~  146 (216)
T PRK13576         76 SLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKGYK  146 (216)
T ss_pred             HHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCchH
Confidence            99999999985 7799997543311       1346799999999999999999999999987 99999999999985 6


Q ss_pred             HHH-HHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614          168 EIA-RIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       168 D~~-~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~  232 (403)
                      |++ +|++   .  ..+++|+||+.| +||+++++|||++||+++++++||||+++++|+++++.+
T Consensus       147 d~l~~Ll~---~--~~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~sAPGQi~v~~l~~i~~~l  206 (216)
T PRK13576        147 EVLLPLLE---Y--ENVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEPTAQGQLHYKKVKQILNYL  206 (216)
T ss_pred             hHHHHHhc---c--cCccEEEcCCcc-HHHHHHHHhCCeeEEEecCCCCCCCCccHHHHHHHHHHH
Confidence            665 6664   2  245889999999 999999999999999999999999999999999999865

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-47  Score=369.40  Aligned_cols=158  Identities=37%  Similarity=0.626  Sum_probs=145.3

Q ss_pred             ccccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCcc--cHHHHHHHhcCCCCceEEecccchHHHHcccccCC
Q 015614          234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  311 (403)
Q Consensus       234 ~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~--~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~  311 (403)
                      ++..+++|||||+||+||+||.|||++|+++|+++.|.+++++  +++++++.++.+++.|+|||||||+++++|+|++|
T Consensus         2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~   81 (283)
T COG0169           2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS   81 (283)
T ss_pred             CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence            3456789999999999999999999999999999999999985  99999999999999999999999999999999999


Q ss_pred             HHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCC
Q 015614          312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  391 (403)
Q Consensus       312 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g  391 (403)
                      +.|+.|||||||+++. ||+|+||||||.||.++|++...           .....+++++|+|||||||||+++|+++|
T Consensus        82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~~-----------~~~~~~~~vlilGAGGAarAv~~aL~~~g  149 (283)
T COG0169          82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL-----------PVDVTGKRVLILGAGGAARAVAFALAEAG  149 (283)
T ss_pred             HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcCC-----------CcccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence            9999999999999982 59999999999999999987421           13456899999999999999999999999


Q ss_pred             C-eEEEEecCCCC
Q 015614          392 A-RVVIFDIDFGT  403 (403)
Q Consensus       392 ~-~i~v~nR~~~k  403 (403)
                      + +|+|+|||.+|
T Consensus       150 ~~~i~V~NRt~~r  162 (283)
T COG0169         150 AKRITVVNRTRER  162 (283)
T ss_pred             CCEEEEEeCCHHH
Confidence            8 89999999764

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=100.00  E-value=5.7e-47  Score=366.72  Aligned_cols=153  Identities=28%  Similarity=0.451  Sum_probs=140.9

Q ss_pred             cceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc-------ccHHHHHHHhcCCCCceEEecccchHHHHccccc
Q 015614          237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE  309 (403)
Q Consensus       237 ~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~-------~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~  309 (403)
                      ++++|||||+||+||+||.|||++|+++|+|+.|.++++       ++++++++.++..+|.|+|||||||+++++++|+
T Consensus         3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~   82 (283)
T PRK14027          3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_pred             CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence            478999999999999999999999999999999999985       4789999999888999999999999999999999


Q ss_pred             CCHHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHH
Q 015614          310 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS  389 (403)
Q Consensus       310 ~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~  389 (403)
                      +|+.|+.+||||||+++ ++|+|+||||||.||+.+|++..             ...++++++|+|||||||||+|+|.+
T Consensus        83 l~~~A~~iGAVNTv~~~-~~g~l~G~NTD~~Gf~~~L~~~~-------------~~~~~k~vlilGaGGaarAi~~aL~~  148 (283)
T PRK14027         83 VSEQATQLGAVNTVVID-ATGHTTGHNTDVSGFGRGMEEGL-------------PNAKLDSVVQVGAGGVGNAVAYALVT  148 (283)
T ss_pred             CCHHHHHhCCceEEEEC-CCCcEEEEcCCHHHHHHHHHhcC-------------cCcCCCeEEEECCcHHHHHHHHHHHH
Confidence            99999999999999985 28999999999999999997531             23457899999999999999999999


Q ss_pred             CCC-eEEEEecCCCC
Q 015614          390 RGA-RVVIFDIDFGT  403 (403)
Q Consensus       390 ~g~-~i~v~nR~~~k  403 (403)
                      +|+ +|+|+|||.+|
T Consensus       149 ~g~~~i~i~nR~~~k  163 (283)
T PRK14027        149 HGVQKLQVADLDTSR  163 (283)
T ss_pred             CCCCEEEEEcCCHHH
Confidence            999 89999998654

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=100.00  E-value=3.7e-46  Score=362.10  Aligned_cols=153  Identities=30%  Similarity=0.510  Sum_probs=141.8

Q ss_pred             cccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614          235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (403)
Q Consensus       235 ~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~  312 (403)
                      +..+++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++|+|++|+
T Consensus         4 ~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~~   83 (288)
T PRK12749          4 TAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTP   83 (288)
T ss_pred             CCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCH
Confidence            34578999999999999999999999999999999999998  4799999999888999999999999999999999999


Q ss_pred             HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (403)
Q Consensus       313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~  392 (403)
                      .|+.|||||||+++  +|+|+||||||.||+.+|++.             +...++++++|+||||+||||+++|..+|+
T Consensus        84 ~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-------------~~~~~~k~vlvlGaGGaarAi~~~l~~~g~  148 (288)
T PRK12749         84 AAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-------------GFDIKGKTMVLLGAGGASTAIGAQGAIEGL  148 (288)
T ss_pred             HHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            99999999999876  899999999999999999753             134578999999999999999999999999


Q ss_pred             -eEEEEecCCC
Q 015614          393 -RVVIFDIDFG  402 (403)
Q Consensus       393 -~i~v~nR~~~  402 (403)
                       +|+|+||+.+
T Consensus       149 ~~i~i~nRt~~  159 (288)
T PRK12749        149 KEIKLFNRRDE  159 (288)
T ss_pred             CEEEEEeCCcc
Confidence             9999999953

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=1.4e-45  Score=357.91  Aligned_cols=153  Identities=31%  Similarity=0.438  Sum_probs=141.2

Q ss_pred             ccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc-------ccHHHHHHHhcCCCCceEEecccchHHHHcccc
Q 015614          236 ADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCD  308 (403)
Q Consensus       236 ~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~-------~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d  308 (403)
                      ..+++|||||+||+||+||.|||++|+++|+|+.|.++++       ++++++++.++..+|.|+|||||||+++++|+|
T Consensus         3 ~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~D   82 (284)
T PRK12549          3 RPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHLD   82 (284)
T ss_pred             ccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhc
Confidence            4578999999999999999999999999999999999985       368899999988899999999999999999999


Q ss_pred             cCCHHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHH
Q 015614          309 EVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK  388 (403)
Q Consensus       309 ~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~  388 (403)
                      ++|+.|+.+||||||+++  +|+|+||||||.||+.+|++..             ...++++++|+|+||+|||++++|.
T Consensus        83 ~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-------------~~~~~k~vlIlGaGGaaraia~aL~  147 (284)
T PRK12549         83 ELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-------------PDASLERVVQLGAGGAGAAVAHALL  147 (284)
T ss_pred             cCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-------------cCccCCEEEEECCcHHHHHHHHHHH
Confidence            999999999999999886  8999999999999999997532             2346789999999999999999999


Q ss_pred             HCCC-eEEEEecCCCC
Q 015614          389 SRGA-RVVIFDIDFGT  403 (403)
Q Consensus       389 ~~g~-~i~v~nR~~~k  403 (403)
                      ++|+ +|+|+||+.+|
T Consensus       148 ~~G~~~I~I~nR~~~k  163 (284)
T PRK12549        148 TLGVERLTIFDVDPAR  163 (284)
T ss_pred             HcCCCEEEEECCCHHH
Confidence            9999 89999998653

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=1.8e-44  Score=337.77  Aligned_cols=206  Identities=15%  Similarity=0.238  Sum_probs=173.6

Q ss_pred             ccCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHH---HHhcCCCcEEEEeecCCCCCCC
Q 015614            4 VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEI---ILTKKPLPVLIVYRPKWAGGLY   80 (403)
Q Consensus         4 ~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~---l~~~~~~PiI~T~R~~~eGG~~   80 (403)
                      ..+-.++|+||+||++++.+|++.+++.+...+||+||||+|+|.+.+.. .+..   ..+..++|+|||+|+.      
T Consensus        14 ~~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~-~~~~~~~~l~~~~~p~I~T~R~~------   86 (229)
T PRK01261         14 FVIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIE-SEPEIISALNEMDIDYIFTYRGV------   86 (229)
T ss_pred             eEeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChH-HHHHHHHHHhhcCCCEEEEEcCC------
Confidence            34567899999999999999999999888778999999999999875432 2232   2233489999999943      


Q ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614           81 EGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        81 ~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                        ++   .++++.+++.++||||||+....++     ..+..++|+|+|||    ||+.+++.+++++|.++||||+|+|
T Consensus        87 --~~---~~~l~~a~~~~~d~vDIEl~~~~~~-----~~~~~~~kvIvS~H----tp~~eeL~~~l~~m~~~gaDI~KiA  152 (229)
T PRK01261         87 --DA---RKYYETAIDKMPPAVDLDINLIGKL-----EFRPRNTMLMVSYH----TNNSDNMPAILDIMNEKNPDYVKVA  152 (229)
T ss_pred             --CH---HHHHHHHHhhCCCEEEEEcccchhh-----hhhcCCCeEEEEeC----CCCHHHHHHHHHHHHHhCCCEEEEE
Confidence              22   4788888887799999999873332     23457999999999    6788999999999999999999999


Q ss_pred             eecCCHhHHHHHHH----HhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614          161 FSVNDITEIARIFQ----LLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       161 ~~~~~~~D~~~ll~----~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~  232 (403)
                      +||++.+|+++++.    +..+.+.|+|+|+||+  ++||+++++|||++||+++.+++||||+++++|+++|+..
T Consensus       153 vmp~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~sAPGQi~v~~l~~~~~~~  226 (229)
T PRK01261        153 CNYNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNETAPGQPKRDYYESAFIKY  226 (229)
T ss_pred             eCCCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCCCCCCCCCHHHHHHHHHHh
Confidence            99999999876663    3344578999999999  9999999999999999999999999999999999999754

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=100.00  E-value=3.6e-45  Score=354.85  Aligned_cols=153  Identities=32%  Similarity=0.484  Sum_probs=137.6

Q ss_pred             ceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc---ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHH
Q 015614          238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV---DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLA  314 (403)
Q Consensus       238 ~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~---~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  314 (403)
                      +++|||||+||+||+||.|||++|+++|+|+.|.++++   +++.++++.++ .+|.|+|||||||+++++++|++|+.|
T Consensus         5 ~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~A   83 (282)
T TIGR01809         5 PKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDRA   83 (282)
T ss_pred             CeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHHH
Confidence            67999999999999999999999999999999999986   36788888774 499999999999999999999999999


Q ss_pred             hhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC-e
Q 015614          315 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-R  393 (403)
Q Consensus       315 ~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~-~  393 (403)
                      +++||||||++++ ||+|+||||||.||+.+|++...           ....++++++||||||+|||++++|.++|+ +
T Consensus        84 ~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~~-----------~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~  151 (282)
T TIGR01809        84 SLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANIGK-----------FEPLAGFRGLVIGAGGTSRAAVYALASLGVTD  151 (282)
T ss_pred             HHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhhCC-----------ccccCCceEEEEcCcHHHHHHHHHHHHcCCCe
Confidence            9999999999852 89999999999999999975310           013568899999999999999999999999 8


Q ss_pred             EEEEecCCCC
Q 015614          394 VVIFDIDFGT  403 (403)
Q Consensus       394 i~v~nR~~~k  403 (403)
                      |+|+|||.+|
T Consensus       152 i~I~nRt~~k  161 (282)
T TIGR01809       152 ITVINRNPDK  161 (282)
T ss_pred             EEEEeCCHHH
Confidence            9999999654

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-44  Score=352.58  Aligned_cols=153  Identities=32%  Similarity=0.522  Sum_probs=141.9

Q ss_pred             ccccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCC
Q 015614          234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  311 (403)
Q Consensus       234 ~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~  311 (403)
                      ++..+++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++|+|++|
T Consensus         5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~   84 (289)
T PRK12548          5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS   84 (289)
T ss_pred             cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence            455678899999999999999999999999999999999998  479999999988899999999999999999999999


Q ss_pred             HHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCC
Q 015614          312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  391 (403)
Q Consensus       312 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g  391 (403)
                      +.|+.+||||||+++  ||+|+||||||.||+.+|++..             ...++|+++|+||||+|||++++|.++|
T Consensus        85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~~-------------~~~~~k~vlI~GAGGagrAia~~La~~G  149 (289)
T PRK12548         85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREHG-------------VDVKGKKLTVIGAGGAATAIQVQCALDG  149 (289)
T ss_pred             HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhcC-------------CCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999887  8999999999999999997531             2356899999999999999999999999


Q ss_pred             C-eEEEEecCC
Q 015614          392 A-RVVIFDIDF  401 (403)
Q Consensus       392 ~-~i~v~nR~~  401 (403)
                      + +|+|+||+.
T Consensus       150 ~~~V~I~~R~~  160 (289)
T PRK12548        150 AKEITIFNIKD  160 (289)
T ss_pred             CCEEEEEeCCc
Confidence            9 699999985

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=3.3e-44  Score=347.69  Aligned_cols=154  Identities=32%  Similarity=0.609  Sum_probs=142.6

Q ss_pred             cccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614          235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (403)
Q Consensus       235 ~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~  312 (403)
                      +..+++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++++|++|+
T Consensus         2 ~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~   81 (278)
T PRK00258          2 TGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSE   81 (278)
T ss_pred             CCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCH
Confidence            34578999999999999999999999999999999999998  6899999999888999999999999999999999999


Q ss_pred             HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (403)
Q Consensus       313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~  392 (403)
                      .|+.+||||||+++  +|+|+||||||.||+.+|++.+.            ..+++++++|+|+||+||+++++|..+|+
T Consensus        82 ~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~~------------~~~~~k~vlVlGaGg~a~ai~~aL~~~g~  147 (278)
T PRK00258         82 RARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERLG------------VDLKGKRILILGAGGAARAVILPLLDLGV  147 (278)
T ss_pred             HHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhccC------------CCCCCCEEEEEcCcHHHHHHHHHHHHcCC
Confidence            99999999999976  89999999999999999975321            34678999999999999999999999996


Q ss_pred             -eEEEEecCCC
Q 015614          393 -RVVIFDIDFG  402 (403)
Q Consensus       393 -~i~v~nR~~~  402 (403)
                       +|+|+||+.+
T Consensus       148 ~~V~v~~R~~~  158 (278)
T PRK00258        148 AEITIVNRTVE  158 (278)
T ss_pred             CEEEEEeCCHH
Confidence             9999999865

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=5.1e-44  Score=344.08  Aligned_cols=152  Identities=32%  Similarity=0.476  Sum_probs=138.9

Q ss_pred             ccccce-EEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614          234 INADTK-VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (403)
Q Consensus       234 ~~~~~~-~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~  312 (403)
                      ++++++ +|||||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||+++++|+|++|+
T Consensus         5 ~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~~   82 (272)
T PRK12550          5 INKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELDP   82 (272)
T ss_pred             CCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCCH
Confidence            455677 59999999  778999999999999999999999988999999999888999999999999999999999999


Q ss_pred             HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (403)
Q Consensus       313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~  392 (403)
                      .|+.+||||||+++  ||+|+||||||.||+.+|++.    +         .. .+++++|+||||+|||++|+|.++|+
T Consensus        83 ~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~----~---------~~-~~~~vlilGaGGaarAi~~aL~~~g~  146 (272)
T PRK12550         83 SAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY----Q---------VP-PDLVVALRGSGGMAKAVAAALRDAGF  146 (272)
T ss_pred             HHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc----C---------CC-CCCeEEEECCcHHHHHHHHHHHHCCC
Confidence            99999999999887  899999999999999999753    1         22 25689999999999999999999999


Q ss_pred             -eEEEEecCCCC
Q 015614          393 -RVVIFDIDFGT  403 (403)
Q Consensus       393 -~i~v~nR~~~k  403 (403)
                       +|+|+||+.+|
T Consensus       147 ~~i~i~nR~~~~  158 (272)
T PRK12550        147 TDGTIVARNEKT  158 (272)
T ss_pred             CEEEEEeCCHHH
Confidence             89999999754

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=100.00  E-value=2e-42  Score=333.82  Aligned_cols=149  Identities=35%  Similarity=0.613  Sum_probs=138.3

Q ss_pred             eEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhh
Q 015614          239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (403)
Q Consensus       239 ~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  316 (403)
                      ++|||+|+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++++|++|+.|++
T Consensus         1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~   80 (270)
T TIGR00507         1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL   80 (270)
T ss_pred             CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence            4799999999999999999999999999999999998  47999999998889999999999999999999999999999


Q ss_pred             ccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEE
Q 015614          317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  396 (403)
Q Consensus       317 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v  396 (403)
                      +||||||+++  +|+|+||||||.||+.+|++. .            ...++++++|+|+||+|++++++|.+.|++|++
T Consensus        81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~-~------------~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v  145 (270)
T TIGR00507        81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERL-I------------PLRPNQRVLIIGAGGAARAVALPLLKADCNVII  145 (270)
T ss_pred             hCCceEEEee--CCEEEEEcCCHHHHHHHHHhc-C------------CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence            9999999976  899999999999999998752 1            234578999999999999999999999999999


Q ss_pred             EecCCC
Q 015614          397 FDIDFG  402 (403)
Q Consensus       397 ~nR~~~  402 (403)
                      +||+.+
T Consensus       146 ~~R~~~  151 (270)
T TIGR00507       146 ANRTVS  151 (270)
T ss_pred             EeCCHH
Confidence            999864

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]

Probab=99.96  E-value=5e-31  Score=260.94  Aligned_cols=357  Identities=12%  Similarity=-0.008  Sum_probs=288.2

Q ss_pred             hcCCCEEEEEecCCCCCC-CchHHHHHHhcCCCcEEEEeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEecccc
Q 015614           34 AEGADVVEIRLDCINNFQ-PGKDLEIILTKKPLPVLIVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVA  109 (403)
Q Consensus        34 ~~~~D~vElRlD~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~  109 (403)
                      +.+++++|.|.|....++ +............+|.+++.|.+||+|.   +.+...++-.-+...++++.+|.|.+++..
T Consensus       118 snralllaa~~eg~~~~~n~L~sddt~~m~sal~~L~~~~~~we~~~~~vveG~gg~~~~~~~~~~eLylgnagta~r~l  197 (595)
T KOG0692|consen  118 SNRALLLAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWEENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPL  197 (595)
T ss_pred             hhhHHHHHHHhccceeccccccccchhhhhhhHHHhccccceecCCCEEEEEcCCCeeeechhhhhhhccCccchhhhhH
Confidence            455666666666554443 1111111222357899999999999998   666665554456677788899999999887


Q ss_pred             chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcC
Q 015614          110 SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG  189 (403)
Q Consensus       110 ~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG  189 (403)
                      .++...+-....+..++|.+.|+.+++|    +..++...++.||||.|++.+...+.|+. ....+....+|+++.-||
T Consensus       198 t~~aa~v~~k~~~k~~Vl~g~hrmq~rP----i~~LV~~l~q~GadI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vss  272 (595)
T KOG0692|consen  198 TEFAAAVTAKGGNKSYVLDGVHRMQERP----IGDLVVGLKQLGADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSS  272 (595)
T ss_pred             HHHHHHhhcCCCCceEEEecCcccccCC----chHHHHHHHhcCCceEEeccCCCCceeee-ccCCCcCceeeeeeeehh
Confidence            7666544344445558999999999999    67778889999999999999999999997 555567778999999999


Q ss_pred             ccchhhhhhcCCCCCcccccccCC-C-CCCCCCCHHHHHhhh--hhccccccceEEeeeccCCcccCCHHHHHHHHHhcC
Q 015614          190 ERGLVSQLLSPKFNGALVYGSLKG-T-PVLGLPTVESLRQTY--KVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVN  265 (403)
Q Consensus       190 ~~G~~SRil~~~~gs~lty~~~~~-~-sApGQ~~~~~l~~~~--~~~~~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~g  265 (403)
                      +.+..+|++.|.++.++|+..++. + |+|+|....+|.+.|  ++.+..+.++.|++.|.|.+|+.+|.+||.+|.+.-
T Consensus       273 qy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lme~fgvn~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~y  352 (595)
T KOG0692|consen  273 QYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGVNVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASY  352 (595)
T ss_pred             hHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHHHHhCcCeEecCCCcceEeccCcccCCCCCceeecccccccc
Confidence            999999999999999999999984 3 999999999999999  788999999999999999999999999999999988


Q ss_pred             CCceEeecCcccHHHHHHHhcCCCCceEE-ecccchHHHHcccccCCHHHhhccceeEEEEeccCCeEEEEeccHHHHHH
Q 015614          266 YNGIYVPMFVDDLKKFFSTYSSPDFAGFS-VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASIT  344 (403)
Q Consensus       266 l~~~y~~~~~~~~~~~~~~~~~~~~~G~~-VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~  344 (403)
                      ..+.|...-++..-.++..-...++.||+ |+.|+|.++...+|++++.+.-+||+|++-.+.-|+...++|||..|-+-
T Consensus       353 fla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svv  432 (595)
T KOG0692|consen  353 FLAGAAITGETVTVEGCGTTSLQGDAKFAEVLEPMGCKVSQTENSVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVV  432 (595)
T ss_pred             cceeeeEecceeeeccccceecccccchHhhhccccceeeeecccccccCCCCCcccceehhhhcccccccchhHhHhHH
Confidence            88888876665544455544456899998 99999999999999999999999999999876457899999999999999


Q ss_pred             HHHHHHHhcCcCCCCCcCC-----CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          345 AIEDAIKERGYKNGTASFG-----SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       345 ~l~~~~~~~~~~~~~~~~~-----~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ++...+...+     +++.     .+.-.++..|+|.|+..|+..+...+.+..++|+||+
T Consensus       433 A~~~~~~s~g-----dptti~~~as~rvket~r~ia~~~el~klg~~~~E~~dg~~v~~~~  488 (595)
T KOG0692|consen  433 ALFAGLRSSG-----DPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDGYCVITPP  488 (595)
T ss_pred             HHhhcccCCC-----CCcccccccchhHHHHHHHHHHHHHHHHhcccccccCceEEEeCCc
Confidence            9987654211     1111     1122357789999999999999888888889999998

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=99.95  E-value=4.2e-29  Score=198.75  Aligned_cols=81  Identities=40%  Similarity=0.815  Sum_probs=74.8

Q ss_pred             eeccCCcccCCHHHHHHHHHhcCCCceEeecCcc--cHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhhccce
Q 015614          243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAV  320 (403)
Q Consensus       243 liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~--~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igav  320 (403)
                      |+|+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++..+|.|+|||||||+++++++|++|+.|+.+|||
T Consensus         1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv   80 (83)
T PF08501_consen    1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV   80 (83)
T ss_dssp             EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred             CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence            6899999999999999999999999999999985  99999999988999999999999999999999999999999999


Q ss_pred             eEE
Q 015614          321 NTI  323 (403)
Q Consensus       321 NTi  323 (403)
                      |||
T Consensus        81 Ntv   83 (83)
T PF08501_consen   81 NTV   83 (83)
T ss_dssp             SEE
T ss_pred             ccC
Confidence            997

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.79  E-value=3.9e-19  Score=172.12  Aligned_cols=128  Identities=19%  Similarity=0.276  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhcCCCceEeec--Cc--ccHHHHHHHhcCC-CCceEEecccchHHHHc--ccccCCHHHhhccceeEEEEe
Q 015614          254 PILHNPTFRHVNYNGIYVPM--FV--DDLKKFFSTYSSP-DFAGFSVGFPYKEAVMK--FCDEVHPLAQAIAAVNTIIRR  326 (403)
Q Consensus       254 P~ihn~~~~~~gl~~~y~~~--~~--~~~~~~~~~~~~~-~~~G~~VT~P~K~~v~~--~~d~~~~~A~~igavNTi~~~  326 (403)
                      -.+|+.+|+++|++..|..+  ++  +++.+.++.++.. ++.|++||+|||+.+.+  ++|++ +.++.++++||+ + 
T Consensus        51 ~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~aKDVdg~n~~-n-  127 (283)
T PRK14192         51 VRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SLAKDVDGVTCL-G-  127 (283)
T ss_pred             HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CHHHhcCCCCcc-c-
Confidence            34899999999999999999  55  4688888888654 79999999999999999  99999 889999999998 3 


Q ss_pred             ccCCe------EEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEec
Q 015614          327 PSDGK------LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       327 ~~~g~------l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR  399 (403)
                        +|+      ++|+||| .||+..|++.             +.+++||+++|+|+|| +||++++.|.+.|+.|++++|
T Consensus       128 --~G~l~~~~~~~~p~T~-~gii~~L~~~-------------~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~  191 (283)
T PRK14192        128 --FGRMAMGEAAYGSATP-AGIMRLLKAY-------------NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS  191 (283)
T ss_pred             --cCccccCCCcccCCcH-HHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence              566      8999999 9999998764             2568899999999999 999999999999999999998


Q ss_pred             C
Q 015614          400 D  400 (403)
Q Consensus       400 ~  400 (403)
                      .
T Consensus       192 ~  192 (283)
T PRK14192        192 R  192 (283)
T ss_pred             C
Confidence            4

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.52  E-value=6.2e-08  Score=83.97  Aligned_cols=39  Identities=33%  Similarity=0.487  Sum_probs=35.8

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .+++++++|+||||+||+++++|.++|+ +|+|+|||.+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~r   48 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPER   48 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHH
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence            4678999999999999999999999999 79999999653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.49  E-value=9.6e-08  Score=95.05  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=59.4

Q ss_pred             hhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHH-CCC-
Q 015614          315 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-  392 (403)
Q Consensus       315 ~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~-~g~-  392 (403)
                      ..+|++|||+.+  ++.|.|+|||+.|++.+..  +.             ....++++|+|+|+.|++.+.++.. .++ 
T Consensus        96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-------------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~  158 (330)
T PRK08291         96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDASRAAVIGAGEQARLQLEALTLVRPIR  158 (330)
T ss_pred             CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence            356999999765  7899999999999999863  22             1234789999999999999999986 567 


Q ss_pred             eEEEEecCCCC
Q 015614          393 RVVIFDIDFGT  403 (403)
Q Consensus       393 ~i~v~nR~~~k  403 (403)
                      +|+|+||+.+|
T Consensus       159 ~V~v~~R~~~~  169 (330)
T PRK08291        159 EVRVWARDAAK  169 (330)
T ss_pred             EEEEEcCCHHH
Confidence            89999998653

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.33  E-value=4.5e-07  Score=90.11  Aligned_cols=71  Identities=15%  Similarity=0.189  Sum_probs=59.0

Q ss_pred             hccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHH-HCCC-e
Q 015614          316 AIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK-SRGA-R  393 (403)
Q Consensus       316 ~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~-~~g~-~  393 (403)
                      ..|++|+++.+  ++.|.|+|||+.|++.+..  +.             ....++++|+|+|+.||+.+.+|. ..++ +
T Consensus        94 ~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-------------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~~  156 (326)
T TIGR02992        94 RTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDSSVVAIFGAGMQARLQLEALTLVRDIRS  156 (326)
T ss_pred             CCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCcEEEEECCCHHHHHHHHHHHHhCCccE
Confidence            45999999765  7899999999999999863  22             123578999999999999999997 4677 8


Q ss_pred             EEEEecCCCC
Q 015614          394 VVIFDIDFGT  403 (403)
Q Consensus       394 i~v~nR~~~k  403 (403)
                      |+|+||+.+|
T Consensus       157 v~V~~R~~~~  166 (326)
T TIGR02992       157 ARIWARDSAK  166 (326)
T ss_pred             EEEECCCHHH
Confidence            9999999754

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.13  E-value=4.6e-06  Score=73.19  Aligned_cols=53  Identities=36%  Similarity=0.547  Sum_probs=45.5

Q ss_pred             ccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       337 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      |||+||..++++..             ...++++++|+|+|+.|++++.+|.+.|. +|++++|+.+
T Consensus         1 td~~g~~~a~~~~~-------------~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~   54 (155)
T cd01065           1 TDGLGFVRALEEAG-------------IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE   54 (155)
T ss_pred             CCHHHHHHHHHhhC-------------CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence            89999999987641             23567899999999999999999999975 8999999864

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.72  E-value=8e-05  Score=70.25  Aligned_cols=48  Identities=29%  Similarity=0.405  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC---eEEEEecC
Q 015614          340 EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID  400 (403)
Q Consensus       340 ~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~---~i~v~nR~  400 (403)
                      .||..+++..             +.++++++++|+||||+|+++++.|.+.|+   +|+|+||+
T Consensus        10 AG~~~al~~~-------------g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          10 AGLLNALKLV-------------GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             HHHHHHHHHh-------------CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            5778877643             135778999999999999999999999997   49999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.52  E-value=1.2e-05  Score=82.77  Aligned_cols=92  Identities=21%  Similarity=0.248  Sum_probs=69.6

Q ss_pred             chHHHHcccccCCHHHhhccceeEEE-------EeccCCeEEEEeccHHHHHHH-----HHHHHHhcCcCCCCCcCCCCC
Q 015614          299 YKEAVMKFCDEVHPLAQAIAAVNTII-------RRPSDGKLIGYNTDCEASITA-----IEDAIKERGYKNGTASFGSPL  366 (403)
Q Consensus       299 ~K~~v~~~~d~~~~~A~~igavNTi~-------~~~~~g~l~G~NTD~~G~~~~-----l~~~~~~~~~~~~~~~~~~~~  366 (403)
                      =+..|+..++.....|+..|++|+++       ++  -++..+++|+..+.-.+     ++....  .        ..++
T Consensus       113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~--~~k~v~~~t~i~~~~~Sv~~~Av~~a~~--~--------~~~~  180 (423)
T PRK00045        113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFS--VAKRVRTETGIGAGAVSVASAAVELAKQ--I--------FGDL  180 (423)
T ss_pred             CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH--HHhhHhhhcCCCCCCcCHHHHHHHHHHH--h--------hCCc
Confidence            36678899999999999999999987       23  45677778886653222     222111  0        0135


Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .+++++|+|+|++|+.++..|...|+ +|+++||+.+
T Consensus       181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~  217 (423)
T PRK00045        181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLE  217 (423)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence            68999999999999999999999998 8999999864

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.50  E-value=8.3e-05  Score=76.23  Aligned_cols=39  Identities=13%  Similarity=0.280  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .+.+++++|+|+||+|++++.+|...|+ +|+|+|||.+|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~r  217 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEK  217 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence            3678999999999999999999999998 89999999653

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.27  E-value=0.0013  Score=52.26  Aligned_cols=53  Identities=26%  Similarity=0.423  Sum_probs=42.7

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEec
Q 015614          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI  399 (403)
Q Consensus       338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR  399 (403)
                      .+.|....|++.....         +..+++++++|+|+|++|++++..|.+.|. +|++++|
T Consensus         2 t~~~~~~~l~~~~~~~---------~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191           2 TAAGAVALLKAAGKVT---------NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             hhHHHHHHHHHHHHHh---------CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3567788887765421         245678999999999999999999999965 9999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.07  E-value=0.00099  Score=60.97  Aligned_cols=60  Identities=33%  Similarity=0.468  Sum_probs=47.3

Q ss_pred             EEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       334 G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      |-||-....+..+++.+.+.+         ..+++++++|+|+ |++|++++..|.+.|++|++++|+.+
T Consensus         3 G~~~ta~aav~~~~~~l~~~~---------~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~   63 (194)
T cd01078           3 GSNTTAAAAVAAAGKALELMG---------KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLE   63 (194)
T ss_pred             CcHHHHHHHHHHHHHHHHHhC---------cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            445666667777777665322         4567899999996 99999999999999999999999854

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.64  E-value=0.013  Score=57.01  Aligned_cols=125  Identities=16%  Similarity=0.218  Sum_probs=78.3

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ....+++|++.....++.    +++.+.++.+ .+++..|+-|-.|.-..+  ...++.++|. +.+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (286)
T PRK14175         54 KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE-KDVDGFHPIN----IG  128 (286)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCCccc----hH
Confidence            346789999987666654    3566666666 457899999999964222  1122222221 1222221110    01


Q ss_pred             eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecC
Q 015614          331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~  400 (403)
                      +++ |    .-.--.|++..|+..             +.+++||+++|+|.|+ +|+.++..|...|+.|++++|.
T Consensus       129 ~l~~~~~~~~PcTp~ai~~ll~~~-------------~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~  191 (286)
T PRK14175        129 KLYIDEQTFVPCTPLGIMEILKHA-------------DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR  191 (286)
T ss_pred             hHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            111 1    112345666666543             2568899999999999 8999999999999999988874

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=96.64  E-value=0.07  Score=48.82  Aligned_cols=130  Identities=16%  Similarity=0.146  Sum_probs=83.8

Q ss_pred             eeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      |.||+.|-.++.++....++..... ++.+|+-+.+..... .+.++.+++. .+.|++...... .     ..  .  .
T Consensus         1 ~~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~-~-----~~--~--~   68 (202)
T cd04726           1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTA-D-----AG--A--L   68 (202)
T ss_pred             CceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEec-c-----cc--H--H
Confidence            4689999999999999888776555 999999766654332 3567788775 588998865532 1     11  1  2


Q ss_pred             HHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           90 ALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        90 ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      .++.+.+.|++++=+-.....+...++. ..++.+.++++..+.. .||  ++..   + +...|+|++++
T Consensus        69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~-~t~--~e~~---~-~~~~~~d~v~~  132 (202)
T cd04726          69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV-EDP--EKRA---K-LLKLGVDIVIL  132 (202)
T ss_pred             HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC-CCH--HHHH---H-HHHCCCCEEEE
Confidence            3477888999998876554332222333 2334577888765432 122  3333   2 55668999998

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.58  E-value=0.0019  Score=65.80  Aligned_cols=39  Identities=21%  Similarity=0.377  Sum_probs=36.1

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .+++++++|+|||-++.-++..|.+.|+ +|+|+|||.+|
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~er  214 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLER  214 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHH
Confidence            3678999999999999999999999998 99999999764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.52  E-value=0.0029  Score=61.81  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=35.9

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+++++++|+|+|++|++++..|..+|++|+++||+.+
T Consensus       147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457899999999999999999999999999999999854

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.46  E-value=0.0071  Score=54.45  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR~~  401 (403)
                      .+.+++++|+|+|++ ++.++..|.+.|++|+++||+.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            578999999999996 8889999999999999999985

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=96.33  E-value=0.33  Score=46.29  Aligned_cols=147  Identities=18%  Similarity=0.159  Sum_probs=90.9

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCc-hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH---HHHHH
Q 015614           18 MAQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR---LEALH   92 (403)
Q Consensus        18 ~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~   92 (403)
                      ...+++++.    .+.+.|||-|||.-++-. ...|. ..++.+++...+|+.+-+|+.  ||.|-.++++.   .+=++
T Consensus         7 cv~s~~~a~----~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR--~gdF~Ys~~E~~~M~~di~   80 (248)
T PRK11572          7 CCYSMECAL----TAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPR--GGDFCYSDGEFAAMLEDIA   80 (248)
T ss_pred             EECCHHHHH----HHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHH
Confidence            345555554    445789999999988754 33443 345666777799999999985  56666666443   33455


Q ss_pred             HHHHcCCcEEEE-----eccccchHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015614           93 LAEDLGADYVDF-----ELKVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI  166 (403)
Q Consensus        93 ~~~~~g~~yvDi-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~  166 (403)
                      .+.++|++.|=+     |-..+.+..++|+.. .++.++  .||- |+.+++.   .+-++.+.++|.|=|==.--+.+.
T Consensus        81 ~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~-a~~~~v--TFHRAfD~~~d~---~~al~~l~~lG~~rILTSGg~~~a  154 (248)
T PRK11572         81 TVRELGFPGLVTGVLDVDGHVDMPRMRKIMAA-AGPLAV--TFHRAFDMCANP---LNALKQLADLGVARILTSGQQQDA  154 (248)
T ss_pred             HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHH-hcCCce--EEechhhccCCH---HHHHHHHHHcCCCEEECCCCCCCH
Confidence            667888887765     333344556667643 234444  6776 8888754   455777777785433222223445


Q ss_pred             hHHHHHHHHh
Q 015614          167 TEIARIFQLL  176 (403)
Q Consensus       167 ~D~~~ll~~~  176 (403)
                      .|.+..++-+
T Consensus       155 ~~g~~~L~~l  164 (248)
T PRK11572        155 EQGLSLIMEL  164 (248)
T ss_pred             HHHHHHHHHH
Confidence            5655555443

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.30  E-value=0.0057  Score=60.91  Aligned_cols=38  Identities=13%  Similarity=0.160  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .+.+++++|+|+|-+|+-++..|.+.|+ +|+|+|||.+
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~  209 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL  209 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            4678999999999999999999999998 8999999953

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.29  E-value=0.0098  Score=55.00  Aligned_cols=57  Identities=21%  Similarity=0.259  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +.|...+++..+...-       .+..++|++++|+|.|..|++++..|.+.|++|++++++.+
T Consensus         6 g~Gv~~~~~~~~~~~~-------~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~   62 (200)
T cd01075           6 AYGVFLGMKAAAEHLL-------GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEE   62 (200)
T ss_pred             HHHHHHHHHHHHHHhc-------CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4677777777665320       02567899999999999999999999999999999998753

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.26  E-value=0.16  Score=47.87  Aligned_cols=151  Identities=19%  Similarity=0.239  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc--CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK--KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD  100 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~  100 (403)
                      ++....++++.+.|+|++=+..-         .+....+.  .+.|++..++...-=|....+.+....-++.+++.|++
T Consensus        21 ~d~~~~~~~~~~~g~~av~v~~~---------~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~   91 (235)
T cd00958          21 EDPEETVKLAAEGGADAVALTKG---------IARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGAD   91 (235)
T ss_pred             cCHHHHHHHHHhcCCCEEEeChH---------HHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCC
Confidence            34444455656678999877422         22221111  35577777763211111122335555667899999999


Q ss_pred             EEEEeccccch-------HHHHHH-hccCCCcEEEEeccCCCCC----CCHhHHHHHHHHHHHcCCCEEEEEeecCCHhH
Q 015614          101 YVDFELKVASN-------ILGKQY-SSHQSGTRFIVSCNLDCET----PSEEDLGYLVSRMQATGADIIKLVFSVNDITE  168 (403)
Q Consensus       101 yvDiEl~~~~~-------~~~~l~-~~~~~~~kiI~S~H~f~~t----p~~~~l~~~~~~~~~~gadivKia~~~~~~~D  168 (403)
                      .||+.++....       ...++. ..++.+.++|+--|.....    -+.+++....+.+.+.|||++|+-.+ .   |
T Consensus        92 ~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~-~---~  167 (235)
T cd00958          92 AVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT-G---D  167 (235)
T ss_pred             EEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC-C---C
Confidence            99998866431       233333 2345788999865541100    12244555567788899999999432 2   3


Q ss_pred             HHHHHHHhccCCCCEEEE
Q 015614          169 IARIFQLLSHCQVPIIAY  186 (403)
Q Consensus       169 ~~~ll~~~~~~~~p~i~~  186 (403)
                      ...+-++....+.|+++.
T Consensus       168 ~~~~~~i~~~~~~pvv~~  185 (235)
T cd00958         168 AESFKEVVEGCPVPVVIA  185 (235)
T ss_pred             HHHHHHHHhcCCCCEEEe
Confidence            333444444456776443

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.24  E-value=0.04  Score=54.06  Aligned_cols=126  Identities=14%  Similarity=0.207  Sum_probs=77.6

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ....+++|++..-..++.    +++.+.++.+ .++...|+-|-+|.-..+-  ..++.++|. +.+-..+..-    -|
T Consensus        55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g  129 (301)
T PRK14194         55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL-KDVDGFHSEN----VG  129 (301)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch-hccCccChhh----hh
Confidence            346788999987666653    3566777777 4578999999999742110  111111111 1111111100    01


Q ss_pred             eE-EEE----eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcch-hHHHHHHHHHHHCCCeEEEEecCC
Q 015614          331 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       331 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaG-Gaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ++ .|.    -.--.|++.-|+..             +.+++||+++|+|.| =+|+.++.-|.+.|+.|++++|+.
T Consensus       130 ~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t  193 (301)
T PRK14194        130 GLSQGRDVLTPCTPSGCLRLLEDT-------------CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS  193 (301)
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHHh-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence            11 111    12245777766553             257899999999997 569999999999999999998753

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=96.22  E-value=0.17  Score=46.54  Aligned_cols=108  Identities=17%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      +++...++.+.+.|+|+|++|.--+...+..+.+..++   ...+.|+++.                  +.++.+.+.|+
T Consensus        21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ga   82 (212)
T PRK00043         21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN------------------DRVDLALAVGA   82 (212)
T ss_pred             ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHcCC
Confidence            44666677777889999999965433211112233332   2346787763                  12456778899


Q ss_pred             cEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614          100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus       100 ~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      ++|=+......  ...+...+..+.++-+|.|+      .+++    .++...|+|++++-
T Consensus        83 d~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~t------~~e~----~~a~~~gaD~v~~~  131 (212)
T PRK00043         83 DGVHLGQDDLP--VADARALLGPDAIIGLSTHT------LEEA----AAALAAGADYVGVG  131 (212)
T ss_pred             CEEecCcccCC--HHHHHHHcCCCCEEEEeCCC------HHHH----HHHhHcCCCEEEEC
Confidence            99877654322  11222233456678888773      2333    34446799999873

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.21  E-value=0.22  Score=46.36  Aligned_cols=120  Identities=15%  Similarity=0.181  Sum_probs=77.3

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      .++..+...+.+++...++.+.+.|+.++|+|++--.   ..+.++.+++..+-++++-.=+     ..   ..++   +
T Consensus        11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~---~~~~i~~l~~~~~~~~~iGaGT-----V~---~~~~---~   76 (206)
T PRK09140         11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPD---PFDSIAALVKALGDRALIGAGT-----VL---SPEQ---V   76 (206)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCcc---HHHHHHHHHHHcCCCcEEeEEe-----cC---CHHH---H
Confidence            4566788999999999999999999999999976432   2346777776665555533211     11   1122   3


Q ss_pred             HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.+++.|++++=.--... +..+.   .+..+.-++.+.|+    |  +|    +.++.+.|+|++|+
T Consensus        77 ~~a~~aGA~fivsp~~~~-~v~~~---~~~~~~~~~~G~~t----~--~E----~~~A~~~Gad~vk~  130 (206)
T PRK09140         77 DRLADAGGRLIVTPNTDP-EVIRR---AVALGMVVMPGVAT----P--TE----AFAALRAGAQALKL  130 (206)
T ss_pred             HHHHHcCCCEEECCCCCH-HHHHH---HHHCCCcEEcccCC----H--HH----HHHHHHcCCCEEEE
Confidence            567888998875532221 22221   22456778888774    2  33    35566789999997

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.19  E-value=0.0057  Score=60.04  Aligned_cols=38  Identities=26%  Similarity=0.299  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+.+++++|+|+|++|++++..|+.+|++|++++|+.+
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45689999999999999999999999999999999853

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=96.02  E-value=0.2  Score=48.87  Aligned_cols=84  Identities=20%  Similarity=0.372  Sum_probs=60.2

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCC----------CCCCC-chHHHHHHhcCCCcEEEEeecCCCCCCC
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCI----------NNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLY   80 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l----------~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~   80 (403)
                      .+.++|.+.+.+++..-++.+.+.|+|.||+-+-+-          .+.+. .+.++.+++..++|+.+-++..      
T Consensus        91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------  164 (296)
T cd04740          91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------  164 (296)
T ss_pred             cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence            367999999999998888888888999999965331          11110 1345556666689999887632      


Q ss_pred             CCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           81 EGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        81 ~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                         .++-.++.+.+.+.|+++|++
T Consensus       165 ---~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         165 ---VTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             ---chhHHHHHHHHHHcCCCEEEE
Confidence               224567778888899999876

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PLN00203 glutamyl-tRNA reductase

Probab=95.95  E-value=0.0071  Score=63.79  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=34.8

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      +.+++++|+|+|++|++++..|...|+ +|+|+||+.+|
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~er  302 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEER  302 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHH
Confidence            668999999999999999999999998 89999998653

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.94  E-value=0.068  Score=48.89  Aligned_cols=119  Identities=17%  Similarity=0.110  Sum_probs=68.4

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      .++..+...+.++....++.+++.|+.+||+|..-...   .+.++.+++..  |.+ ..    .+|.. ... ++   +
T Consensus        13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~--~~~-~~----g~gtv-l~~-d~---~   77 (187)
T PRK07455         13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKL--PEC-II----GTGTI-LTL-ED---L   77 (187)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhC--CCc-EE----eEEEE-EcH-HH---H
Confidence            45667899999999999999999999999999765432   23444444333  221 00    11221 111 33   3


Q ss_pred             HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.+++.|+++|=+--...+ ..+ .... .+...+++ .|+    |  +|    +.++.+.|+|++|+
T Consensus        78 ~~A~~~gAdgv~~p~~~~~-~~~-~~~~-~~~~~i~G-~~t----~--~e----~~~A~~~Gadyv~~  131 (187)
T PRK07455         78 EEAIAAGAQFCFTPHVDPE-LIE-AAVA-QDIPIIPG-ALT----P--TE----IVTAWQAGASCVKV  131 (187)
T ss_pred             HHHHHcCCCEEECCCCCHH-HHH-HHHH-cCCCEEcC-cCC----H--HH----HHHHHHCCCCEEEE
Confidence            5678889999832211111 111 1111 23335566 553    3  23    34455689999998

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=95.83  E-value=1.2  Score=43.31  Aligned_cols=204  Identities=14%  Similarity=0.067  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCC-------CCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHH
Q 015614           24 QVLSNMYQAKAEGADVVEIRLDCI-------NNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE   95 (403)
Q Consensus        24 e~~~~~~~~~~~~~D~vElRlD~l-------~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~   95 (403)
                      +.+.-+....+.|+|.||+=.-..       ...++.+.+..+++. .+.++..-.|..+.=|..+...+-..+.++.+.
T Consensus        22 ~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~  101 (275)
T cd07937          22 DMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAA  101 (275)
T ss_pred             HHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHH
Confidence            333334444567999999975331       122334566666654 367888888876554544445556677888999


Q ss_pred             HcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHhHHH
Q 015614           96 DLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DITEIA  170 (403)
Q Consensus        96 ~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~~~D~~  170 (403)
                      +.|+++|-|-....+  ...+.+...+..+.++...... +....+.+.+.+..+++.+.|+|.+-++=+.-  ++.++.
T Consensus       102 ~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~  181 (275)
T cd07937         102 KNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAY  181 (275)
T ss_pred             HcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence            999999888554432  2222222334456666654432 22223567899999999999999998886654  478888


Q ss_pred             HHHHHhccC-CCCEEE-----EEcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          171 RIFQLLSHC-QVPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       171 ~ll~~~~~~-~~p~i~-----~~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      ++.+.+.+. +.|+-.     ++|+.   ..-+..-..|....-+++.+ +-..|+.+++++...++
T Consensus       182 ~lv~~l~~~~~~~l~~H~Hnd~GlA~---aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~  245 (275)
T cd07937         182 ELVKALKKEVGLPIHLHTHDTSGLAV---ATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALR  245 (275)
T ss_pred             HHHHHHHHhCCCeEEEEecCCCChHH---HHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHH
Confidence            887776543 444322     12222   22222222344444344432 23478888888876654

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.61  E-value=0.07  Score=52.33  Aligned_cols=126  Identities=14%  Similarity=0.209  Sum_probs=75.9

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ....+++|++..-..++.    +++.+.++.+ .++++.|+-|-.|+-..+-  ..++.++|. +.+-..+.+-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (296)
T PRK14188         54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE-KDVDGLHVVN----AG  128 (296)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc-cccccCChhh----HH
Confidence            346789999876444432    3566777777 4578999999999742210  111111111 1111111000    01


Q ss_pred             eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEE-ecCC
Q 015614          331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIF-DIDF  401 (403)
Q Consensus       331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilG-aGGaarai~~al~~~g~~i~v~-nR~~  401 (403)
                      ++. |    .-.--.|++.-|+..             +.+++||+++|+| +|-+|+.++.-|.+.|+.|+++ +||.
T Consensus       129 ~l~~~~~~~~PcTp~ai~~ll~~~-------------~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~  193 (296)
T PRK14188        129 RLATGETALVPCTPLGCMMLLRRV-------------HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR  193 (296)
T ss_pred             HHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC
Confidence            110 0    111256666666543             2568899999999 7888999999999999999999 4774

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=95.58  E-value=0.15  Score=46.95  Aligned_cols=130  Identities=17%  Similarity=0.077  Sum_probs=85.4

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (403)
                      .+|+.+-..+.++...-++.. ..|.|.||+-.-++.... .+.++.+++.. +.++++....- +       ...+  -
T Consensus         1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d-------~~~~--~   68 (206)
T TIGR03128         1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-D-------AGEY--E   68 (206)
T ss_pred             CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-c-------chHH--H
Confidence            378999999999999888776 888999999644544332 25677887763 56677665532 1       1111  3


Q ss_pred             HHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           91 LHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        91 l~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      ++.+.+.|+++|-+-...+.....+++ ..++.+.++++..++.. |     ..+....+.++|+|++|+
T Consensus        69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-t-----~~~~~~~~~~~g~d~v~~  132 (206)
T TIGR03128        69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVK-D-----KVKRAKELKELGADYIGV  132 (206)
T ss_pred             HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCC-C-----hHHHHHHHHHcCCCEEEE
Confidence            567888999999877665432223333 23456889998766531 2     233445556779999988

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK08328 hypothetical protein; Provisional

Probab=95.49  E-value=0.016  Score=54.75  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++++++|+|+||.|.+++..|+..|+ +|+|++.+
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            346789999999999999999999999 99999875

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.31  E-value=0.019  Score=47.14  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ++++++++|+|+|..|..-+..|.+.|++|+|++.+
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            467899999999999999999999999999999876

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.30  E-value=0.051  Score=48.52  Aligned_cols=38  Identities=37%  Similarity=0.541  Sum_probs=30.1

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.||+++|+|-|-.+|.+|..|+.+|++|+|+.+++
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            56789999999999999999999999999999998875

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=95.28  E-value=0.51  Score=44.39  Aligned_cols=138  Identities=18%  Similarity=0.212  Sum_probs=84.1

Q ss_pred             EEeccc--CCHHHHHHHHHHHHhcCCCEE--EEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCC--CCH
Q 015614           14 CAPLMA--QSVEQVLSNMYQAKAEGADVV--EIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYE--GDE   84 (403)
Q Consensus        14 cv~l~~--~~~~e~~~~~~~~~~~~~D~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~   84 (403)
                      |+++.+  .+......+++++...|+|.+  .+|+-.+......+.+..++   +...+|+|+..+..  |....  .++
T Consensus        65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~--g~~~~~~~~~  142 (235)
T cd00958          65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPR--GPAVKNEKDP  142 (235)
T ss_pred             CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEecc--CCcccCccCH
Confidence            455554  566777778889999999988  77755443211122344444   34689999977652  33221  233


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614           85 HKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus        85 ~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      ++-.+..+.+.+.|+|||=+......+.++++...  -...++++=..  +..+.++..+.+.++.+.|++-+
T Consensus       143 ~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~--~~~~~~~~l~~~~~~~~~Ga~gv  211 (235)
T cd00958         143 DLIAYAARIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGP--KKDSEEEFLKMVYDAMEAGAAGV  211 (235)
T ss_pred             HHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCC--CCCCHHHHHHHHHHHHHcCCcEE
Confidence            33333466788999999999654333455666532  23445555321  22355778888888999999844

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=95.26  E-value=1.7  Score=38.95  Aligned_cols=141  Identities=16%  Similarity=0.202  Sum_probs=85.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC---CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHc
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK---PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~---~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (403)
                      +.+.+...++...+.|+|.+++--         +.+..+++..   +.|+++.+-...  +.  ..-++-.+..+.+.+.
T Consensus        11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~--~~--~~~~~~~~~a~~a~~~   77 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPT--GL--TTTEVKVAEVEEAIDL   77 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCC--CC--CcHHHHHHHHHHHHHc
Confidence            677777777777888999999854         3444454432   588887665421  11  2246777888999999


Q ss_pred             CCcEEEEecccc-------c---hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC---
Q 015614           98 GADYVDFELKVA-------S---NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN---  164 (403)
Q Consensus        98 g~~yvDiEl~~~-------~---~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~---  164 (403)
                      |++.+.+-....       +   +.++++...-+.+..+++- +....+.+.+++.+..+.+...|+|.+|......   
T Consensus        78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy-~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~  156 (201)
T cd00945          78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI-LETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG  156 (201)
T ss_pred             CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE-EECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence            999999864431       1   2223333221124444443 3333333456677776667778999999776422   


Q ss_pred             -CHhHHHHHHHH
Q 015614          165 -DITEIARIFQL  175 (403)
Q Consensus       165 -~~~D~~~ll~~  175 (403)
                       +.+....+.+.
T Consensus       157 ~~~~~~~~i~~~  168 (201)
T cd00945         157 ATVEDVKLMKEA  168 (201)
T ss_pred             CCHHHHHHHHHh
Confidence             44555444433

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.25  E-value=0.019  Score=56.72  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      +.+++++|+|+|.+|+.++..|...|+ +|+++||+.+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~  213 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYE  213 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            568999999999999999999998887 8999999865

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.22  E-value=0.02  Score=59.00  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      +.+++++|+|+|.+|+.++..|...|+ +|+++||+.+
T Consensus       178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~  215 (417)
T TIGR01035       178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYE  215 (417)
T ss_pred             ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            568999999999999999999999997 9999999864

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=95.15  E-value=0.75  Score=45.11  Aligned_cols=84  Identities=21%  Similarity=0.304  Sum_probs=58.8

Q ss_pred             CeeEEEecccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----------CC---chHHHHHHhcCCCcEEEEeecC
Q 015614           10 TTMICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNF-----------QP---GKDLEIILTKKPLPVLIVYRPK   74 (403)
Q Consensus        10 ~~~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-----------~~---~~~l~~l~~~~~~PiI~T~R~~   74 (403)
                      +|. .+++.+. +.++...-++.+.+.|+|+|||=+.+-...           ++   .+.++.+++..++|+.+-+|..
T Consensus       100 ~p~-i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~  178 (299)
T cd02940         100 KIL-IASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN  178 (299)
T ss_pred             CeE-EEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence            454 5888888 999988888777667899999988875421           11   1233344556689999998852


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015614           75 WAGGLYEGDEHKRLEALHLAEDLGADYVD  103 (403)
Q Consensus        75 ~eGG~~~~~~~~~~~ll~~~~~~g~~yvD  103 (403)
                               .....++.+.+.+.|++.|-
T Consensus       179 ---------~~~~~~~a~~~~~~Gadgi~  198 (299)
T cd02940         179 ---------ITDIREIARAAKEGGADGVS  198 (299)
T ss_pred             ---------chhHHHHHHHHHHcCCCEEE
Confidence                     12456777778888999875

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=95.14  E-value=2.6  Score=45.35  Aligned_cols=205  Identities=13%  Similarity=0.104  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614           23 EQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLA   94 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~   94 (403)
                      ++.+.-++...+.|.+.||.-    .|.   +...++.+.+..+++. .+.++..-+|..+--|.....++-..+.++.+
T Consensus        21 ~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a  100 (582)
T TIGR01108        21 EDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKA  100 (582)
T ss_pred             HHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHH
Confidence            444444444455699999995    553   2222445677777764 36788888887777776666666677788999


Q ss_pred             HHcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEec-cCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015614           95 EDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSC-NLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DIT  167 (403)
Q Consensus        95 ~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~-H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~~~  167 (403)
                      ++.|++.+-+=....+  +....+...+..+..+.++. +.+  +|  +.+.+.++.+++.+.|||.+-|+=|.-  ++.
T Consensus       101 ~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~  178 (582)
T TIGR01108       101 VENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT--SPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPK  178 (582)
T ss_pred             HHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc--CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHH
Confidence            9999998887655433  23333333334455555442 223  55  567899999999999999988886664  578


Q ss_pred             HHHHHHHHhcc-CCCCEEEE---EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          168 EIARIFQLLSH-CQVPIIAY---SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       168 D~~~ll~~~~~-~~~p~i~~---~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      ++.++.+.+.+ .+.|+ .+   +.--.+..+-+..-.-|....-+++.. +-..||++++++...++
T Consensus       179 ~v~~lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~  245 (582)
T TIGR01108       179 AAYELVSALKKRFGLPV-HLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALR  245 (582)
T ss_pred             HHHHHHHHHHHhCCCce-EEEecCCCCcHHHHHHHHHHhCCCEEEeccccccccccChhHHHHHHHHH
Confidence            88888777543 24443 22   222233344443333444444344432 24578888888776655

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=95.14  E-value=0.87  Score=41.53  Aligned_cols=119  Identities=19%  Similarity=0.237  Sum_probs=69.5

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      .++..+...+.+++...++.+.+.|+++||+|+.--.   ..+.++.+++..+- +.+.      +|..- +. +   -+
T Consensus         5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~---~~~~i~~l~~~~~~-~~iG------ag~v~-~~-~---~~   69 (190)
T cd00452           5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG---ALEAIRALRKEFPE-ALIG------AGTVL-TP-E---QA   69 (190)
T ss_pred             cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHHHCCC-CEEE------EEeCC-CH-H---HH
Confidence            3456688899999999999999999999999976322   22456666655431 2222      22221 11 2   23


Q ss_pred             HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.++..|+++|=.--. ..+..+   ..+..+.++|.-..    |  .+|    ..++.+.|||++|+
T Consensus        70 ~~a~~~Ga~~i~~p~~-~~~~~~---~~~~~~~~~i~gv~----t--~~e----~~~A~~~Gad~i~~  123 (190)
T cd00452          70 DAAIAAGAQFIVSPGL-DPEVVK---AANRAGIPLLPGVA----T--PTE----IMQALELGADIVKL  123 (190)
T ss_pred             HHHHHcCCCEEEcCCC-CHHHHH---HHHHcCCcEECCcC----C--HHH----HHHHHHCCCCEEEE
Confidence            5667789998843211 112221   12234566666443    2  233    34445689999998

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.05  E-value=0.15  Score=49.72  Aligned_cols=124  Identities=18%  Similarity=0.300  Sum_probs=76.9

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++...++.+ .++++.|+-|-.|....+  ...++.++|. +.+-..+-.-    -|
T Consensus        60 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g  134 (287)
T PRK14176         60 HKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA-KDADGFHPYN----MG  134 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-ccccccChhh----hh
Confidence            356889999988777654    3566777777 457899999999975322  1111111111 1111110000    01


Q ss_pred             eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEec
Q 015614          331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR  399 (403)
                      +++ |    .-.--.|++..|+..             +.+++||+++|+|.|. .||.++.-|...|+.|+++..
T Consensus       135 ~l~~g~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs  196 (287)
T PRK14176        135 KLMIGDEGLVPCTPHGVIRALEEY-------------GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHV  196 (287)
T ss_pred             hHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEec
Confidence            111 1    112345666666543             2578999999999998 799999999999999999874

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.03  E-value=0.13  Score=50.16  Aligned_cols=125  Identities=18%  Similarity=0.260  Sum_probs=77.0

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .+++..|+-|-.|+...+  ...++.+++. +.+-..+..-    -|
T Consensus        55 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~-KDVDGl~~~n----~g  129 (285)
T PRK10792         55 RKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD-KDVDGFHPYN----VG  129 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccCccChhh----Hh
Confidence            356789999987666643    3566777777 456799999999975221  1111111110 1111111000    01


Q ss_pred             eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecC
Q 015614          331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~  400 (403)
                      ++ .|    .-.--.|++..|+..             +.+++||+++|+|-|. .||.++.-|...|+.|+++.+.
T Consensus       130 ~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~  192 (285)
T PRK10792        130 RLAQRIPLLRPCTPRGIMTLLERY-------------GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF  192 (285)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC
Confidence            11 01    122345666666543             2578899999999999 7999999999999999998763

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.01  E-value=0.051  Score=55.95  Aligned_cols=40  Identities=33%  Similarity=0.512  Sum_probs=35.8

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      ..+.|++++|+|.|..|+.++..|..+|++|+++++++.|
T Consensus       208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~r  247 (425)
T PRK05476        208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC  247 (425)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchh
Confidence            3467999999999999999999999999999999988653

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=95.00  E-value=0.82  Score=42.36  Aligned_cols=125  Identities=23%  Similarity=0.353  Sum_probs=70.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCc-hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH---HHHHHH
Q 015614           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR---LEALHL   93 (403)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~~   93 (403)
                      ..+++++.    .+.+.|||-|||.-++-. .+.|. ..++.+++..++|+-+-+|+.  ||.|-.++++.   .+-++.
T Consensus         7 v~s~~~a~----~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr--~gdF~Ys~~E~~~M~~dI~~   80 (201)
T PF03932_consen    7 VESLEDAL----AAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPR--GGDFVYSDEEIEIMKEDIRM   80 (201)
T ss_dssp             ESSHHHHH----HHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SS--SS-S---HHHHHHHHHHHHH
T ss_pred             eCCHHHHH----HHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCC--CCCccCCHHHHHHHHHHHHH
Confidence            34555554    445789999999987653 33332 456677778899999999975  56666666544   344556


Q ss_pred             HHHcCCcEEEEec-----cccchHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCC
Q 015614           94 AEDLGADYVDFEL-----KVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGAD  155 (403)
Q Consensus        94 ~~~~g~~yvDiEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gad  155 (403)
                      +.++|++-+-+=.     ..+.+..++|+.. .++..+..  |- |+.+++..+   -++.+.++|.+
T Consensus        81 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~-a~~~~~tF--HRAfD~~~d~~~---al~~L~~lG~~  142 (201)
T PF03932_consen   81 LRELGADGFVFGALTEDGEIDEEALEELIEA-AGGMPVTF--HRAFDEVPDPEE---ALEQLIELGFD  142 (201)
T ss_dssp             HHHTT-SEEEE--BETTSSB-HHHHHHHHHH-HTTSEEEE---GGGGGSSTHHH---HHHHHHHHT-S
T ss_pred             HHHcCCCeeEEEeECCCCCcCHHHHHHHHHh-cCCCeEEE--eCcHHHhCCHHH---HHHHHHhcCCC
Confidence            7788998776632     2233455666643 24555554  64 899987544   45566666755

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=94.86  E-value=0.042  Score=54.36  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHH-CCC-eEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~-~g~-~i~v~nR~~~k  403 (403)
                      ..++++|+|+|+.|++.+.++.. .+. +|+|+||+++|
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~  162 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK  162 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence            46899999999999999988776 566 89999998753

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.75  E-value=0.033  Score=56.55  Aligned_cols=34  Identities=32%  Similarity=0.422  Sum_probs=31.7

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      ++++|+|+|+||.|..++..|+..|+ +|++++++
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35789999999999999999999999 99999986

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.73  E-value=0.031  Score=56.60  Aligned_cols=36  Identities=31%  Similarity=0.363  Sum_probs=32.6

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++++|+|+|++|+.++..|..+|++|++++|+.+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~  201 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINID  201 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            457799999999999999999999999999999753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.71  E-value=0.2  Score=48.82  Aligned_cols=124  Identities=19%  Similarity=0.288  Sum_probs=76.6

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .+++..|+-|-.|.-..+-  ..++.++|. +.+-..+..-    -|
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (285)
T PRK14189         54 VKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE-KDVDGFHVAN----AG  128 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChhh----hh
Confidence            356789999887666653    3577777777 4577999999999742211  111111111 1111111100    01


Q ss_pred             eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      +++ |    .-.--.|++.-|+..             +.+++||+++|+|.|+. +|.++.-|.+.|+.|+++.+
T Consensus       129 ~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs  190 (285)
T PRK14189        129 ALMTGQPLFRPCTPYGVMKMLESI-------------GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHS  190 (285)
T ss_pred             HhhCCCCCCcCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecC
Confidence            111 1    112245666666543             36789999999999999 99999999999999888764

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.69  E-value=0.041  Score=51.36  Aligned_cols=35  Identities=31%  Similarity=0.513  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++++++|+|+||.|..++..|...|+ +|++++.+
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            457889999999999999999999999 89999876

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=94.68  E-value=0.37  Score=46.80  Aligned_cols=87  Identities=24%  Similarity=0.272  Sum_probs=65.3

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-------CC---chHHHHHHhcCCCcEEEEeecCCCCCCCCC
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-------QP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEG   82 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-------~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~   82 (403)
                      +.++|.+.+.++....++.+.+.|+|+||+-+-+-...       ++   .+.++.+++..++|+++-++..       .
T Consensus       101 vi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~-------~  173 (289)
T cd02810         101 LIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY-------F  173 (289)
T ss_pred             EEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC-------C
Confidence            57899999999998888888788999999977653211       11   1345566666689999988853       2


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEec
Q 015614           83 DEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        83 ~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      ++++-.++.+.+.+.|+|+|.+--
T Consensus       174 ~~~~~~~~a~~l~~~Gad~i~~~~  197 (289)
T cd02810         174 DLEDIVELAKAAERAGADGLTAIN  197 (289)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEc
Confidence            456677888889999999999853

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=94.55  E-value=4  Score=43.01  Aligned_cols=211  Identities=14%  Similarity=0.053  Sum_probs=129.8

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (403)
                      +.+|++.-++..-+.|.+.||.-    .|-   +...++.+.+..+++.. +.|+-.-+|-.+==|....+++-..+.++
T Consensus        25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~  104 (499)
T PRK12330         25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE  104 (499)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence            34555555555556799999996    663   12225567788887654 67888888866665665667777778899


Q ss_pred             HHHHcCCcEEEEeccccc--hHHHHHHhccC--CCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015614           93 LAEDLGADYVDFELKVAS--NILGKQYSSHQ--SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DI  166 (403)
Q Consensus        93 ~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~--~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~~  166 (403)
                      .+++.|++.+-|=..+.+  .....+...++  .+...-++|-. +.--+.+.+.++.+++.+.|||.+-|+=|+-  ++
T Consensus       105 ~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~-sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P  183 (499)
T PRK12330        105 KSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV-SPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKP  183 (499)
T ss_pred             HHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec-CCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCH
Confidence            999999999887544433  22111111222  22323344421 1011457799999999999999998887774  57


Q ss_pred             hHHHHHHHHhccC---CCCEEEEE--cCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhhhc
Q 015614          167 TEIARIFQLLSHC---QVPIIAYS--VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       167 ~D~~~ll~~~~~~---~~p~i~~~--MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~~~  232 (403)
                      .+..++.+.+.+.   +.|+-.=+  +--.+..+-+..---|....-+++.. +-.+||++.+++...++..
T Consensus       184 ~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~  255 (499)
T PRK12330        184 QPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGT  255 (499)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhc
Confidence            8888888776543   35543212  12223333333333454444444443 4568999999988777643

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=94.47  E-value=2.7  Score=39.15  Aligned_cols=116  Identities=17%  Similarity=0.264  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCC-CCCCCCHHHHHHHHHHHHHcCCcE
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAG-GLYEGDEHKRLEALHLAEDLGADY  101 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG-G~~~~~~~~~~~ll~~~~~~g~~y  101 (403)
                      ++...-+..+...|+.++++.       + .+.+..+++.+++|+|...|..-.+ -.+-..   ..+.++.+.+.|+++
T Consensus        23 ~~~~~~a~a~~~~G~~~~~~~-------~-~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~---~~~~v~~a~~aGad~   91 (221)
T PRK01130         23 EIMAAMALAAVQGGAVGIRAN-------G-VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP---TLKEVDALAAAGADI   91 (221)
T ss_pred             HHHHHHHHHHHHCCCeEEEcC-------C-HHHHHHHHHhCCCCEEEEEecCCCCCCceECC---CHHHHHHHHHcCCCE
Confidence            444444555566788888872       1 3578888888899999777622011 012111   223457888899999


Q ss_pred             EEEeccc---cc-hHHHHHH-hccC-CCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          102 VDFELKV---AS-NILGKQY-SSHQ-SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       102 vDiEl~~---~~-~~~~~l~-~~~~-~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      |=+++..   +. +...+++ ..++ .+..++...|+      .+++    .++.+.|+|++.+
T Consensus        92 I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t------~ee~----~~a~~~G~d~i~~  145 (221)
T PRK01130         92 IALDATLRPRPDGETLAELVKRIKEYPGQLLMADCST------LEEG----LAAQKLGFDFIGT  145 (221)
T ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCC------HHHH----HHHHHcCCCEEEc
Confidence            8887654   21 2222333 2334 67888887763      3333    4677889999876

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=94.44  E-value=4.6  Score=38.27  Aligned_cols=198  Identities=18%  Similarity=0.133  Sum_probs=117.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCC----C-CCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCIN----N-FQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLA   94 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~-~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~   94 (403)
                      +.++.++-++...+.|+|.||+=.=--.    . .++.+.+..+++.. +.++.+-.|..             .+.++.+
T Consensus        17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-------------~~~i~~a   83 (265)
T cd03174          17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR-------------EKGIERA   83 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc-------------hhhHHHH
Confidence            4566666666666789999998543211    0 12234556666544 46665555541             3456778


Q ss_pred             HHcCCcEEEEeccccc----------------hHHHHHHhccCCCcEEEEecc-CCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614           95 EDLGADYVDFELKVAS----------------NILGKQYSSHQSGTRFIVSCN-LDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus        95 ~~~g~~yvDiEl~~~~----------------~~~~~l~~~~~~~~kiI~S~H-~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      .+.|++.|-+=+...+                +..+.+...++.+..+.++.= .+...-+.+++.++++++.++|+|.+
T Consensus        84 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i  163 (265)
T cd03174          84 LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEI  163 (265)
T ss_pred             HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence            8889998888766552                122222234556778888873 34311245789999999999999999


Q ss_pred             EEEeec--CCHhHHHHHHHHhccC-C-CCEEEEEcCc--cchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          158 KLVFSV--NDITEIARIFQLLSHC-Q-VPIIAYSVGE--RGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       158 Kia~~~--~~~~D~~~ll~~~~~~-~-~p~i~~~MG~--~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      -++=+.  -+++++.++++.+.+. + .|+-.=+=-.  +|...-+..-..|....=+++.+ +-..|+++++++...++
T Consensus       164 ~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~  243 (265)
T cd03174         164 SLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALE  243 (265)
T ss_pred             EechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHH
Confidence            887554  3588888888876543 2 3332111111  12222222223344444344433 35689999988876665


Q ss_pred             h
Q 015614          231 V  231 (403)
Q Consensus       231 ~  231 (403)
                      .
T Consensus       244 ~  244 (265)
T cd03174         244 G  244 (265)
T ss_pred             h
Confidence            3

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.32  E-value=0.06  Score=51.37  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            457899999999999999999999999 99999865

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=94.30  E-value=4.9  Score=38.68  Aligned_cols=86  Identities=15%  Similarity=0.153  Sum_probs=55.7

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHH-hcCCCcE-E
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIIL-TKKPLPV-L   68 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~-~~~~~Pi-I   68 (403)
                      +.-++.-.|+.+...+.+....+.|+|++||-+-+-.+.-+                     -+.++.+| +..++|+ +
T Consensus        15 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vl   94 (258)
T PRK13111         15 IPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVL   94 (258)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            34567788899999888888888999999999887654421                     13445566 3457894 4


Q ss_pred             EEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           69 IVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        69 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                      .|+-+.-    +...   .-++++.+.+.|++-+=|
T Consensus        95 m~Y~N~i----~~~G---~e~f~~~~~~aGvdGvii  123 (258)
T PRK13111         95 MTYYNPI----FQYG---VERFAADAAEAGVDGLII  123 (258)
T ss_pred             EecccHH----hhcC---HHHHHHHHHHcCCcEEEE
Confidence            5544320    1111   124677888888776644

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=94.29  E-value=1.4  Score=40.12  Aligned_cols=106  Identities=24%  Similarity=0.208  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      ++....++.+.+.|+++|.+|.--+.+.+..+.+..++   +..+.|+++.-               +   .+.+.+.|+
T Consensus        13 ~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~---------------~---~~la~~~g~   74 (196)
T TIGR00693        13 ADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVND---------------R---VDLALALGA   74 (196)
T ss_pred             ccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC---------------H---HHHHHHcCC
Confidence            34666677788899999999964333211111223333   34578888852               1   245667788


Q ss_pred             cEEEEecccc-chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          100 DYVDFELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       100 ~yvDiEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.|=+..... ....+.   ....+..|-+|.|+.      +++    .++.+.|+|++++
T Consensus        75 ~GvHl~~~~~~~~~~r~---~~~~~~~ig~s~h~~------~e~----~~a~~~g~dyi~~  122 (196)
T TIGR00693        75 DGVHLGQDDLPASEARA---LLGPDKIIGVSTHNL------EEL----AEAEAEGADYIGF  122 (196)
T ss_pred             CEEecCcccCCHHHHHH---hcCCCCEEEEeCCCH------HHH----HHHhHcCCCEEEE
Confidence            8776643322 222222   223566888999962      333    3466689999997

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.28  E-value=0.087  Score=54.11  Aligned_cols=40  Identities=33%  Similarity=0.533  Sum_probs=35.8

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      ..+.|++++|+|+|..|+.++..++..|++|+++++++.|
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R  237 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPIC  237 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            4567999999999999999999999999999999887653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.21  E-value=0.094  Score=47.36  Aligned_cols=38  Identities=34%  Similarity=0.437  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|+++.|+|.|..|++++..|+..|++|+.++|+.
T Consensus        32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~   69 (178)
T PF02826_consen   32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP   69 (178)
T ss_dssp             S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred             cccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence            56789999999999999999999999999999999975

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.08  E-value=0.069  Score=51.70  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++.+|+|+|+||+|..++.+|++.|+ +|+|++.+
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            567899999999999999999999998 99999865

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.07  E-value=0.46  Score=46.21  Aligned_cols=124  Identities=17%  Similarity=0.221  Sum_probs=74.8

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .+++..|.-|-+|+...+-  ..++.++|. +.+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (278)
T PRK14172         54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN-KDIDCLTFIS----VG  128 (278)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cccCccCHhh----HH
Confidence            356889999988777763    3566666666 4567999999999742211  111111110 1111111000    01


Q ss_pred             eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      ++ .|    .-.--.|++.-|+..             +.+++||+++|+|-+.. +|.++.-|.+.|+.|+++.+
T Consensus       129 ~l~~g~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs  190 (278)
T PRK14172        129 KFYKGEKCFLPCTPNSVITLIKSL-------------NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHS  190 (278)
T ss_pred             HHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence            11 11    112334666665543             35789999999997665 99999999999999999864

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=94.06  E-value=8.7  Score=40.02  Aligned_cols=206  Identities=15%  Similarity=0.143  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614           23 EQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLA   94 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~   94 (403)
                      ++.+.-++...+.|.+.||.-    .|.   +...++.+.+..+++. .+.++..-.|..+--|..+.+++-..+.++.+
T Consensus        26 ~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A  105 (448)
T PRK12331         26 EEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKS  105 (448)
T ss_pred             HHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHH
Confidence            444444444455699999994    552   2222455677777765 35666666887767676666777777889999


Q ss_pred             HHcCCcEEEEeccccc--hHHHHHHhccCCCcEE--EEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015614           95 EDLGADYVDFELKVAS--NILGKQYSSHQSGTRF--IVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DI  166 (403)
Q Consensus        95 ~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~ki--I~S~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~~  166 (403)
                      ++.|++.+-|=....+  +..+.+...+..+..+  -+||-+   .|  +.+.+.++.+++.+.|+|.+-|+=|.-  ++
T Consensus       106 ~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~---~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P  182 (448)
T PRK12331        106 VENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT---SPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTP  182 (448)
T ss_pred             HHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec---CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCH
Confidence            9999999888665543  2222222233334443  345443   23  457789999999999999998887765  57


Q ss_pred             hHHHHHHHHhcc-CCCCEEEE--EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhhh
Q 015614          167 TEIARIFQLLSH-CQVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (403)
Q Consensus       167 ~D~~~ll~~~~~-~~~p~i~~--~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~~  231 (403)
                      .++.++.+.+.+ .+.|+-.=  +.--.|..+-+..-..|....-+++.. +.-.||++.+++...++.
T Consensus       183 ~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~  251 (448)
T PRK12331        183 YVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQD  251 (448)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHh
Confidence            888888877653 35554321  122233334443333454444444432 123799999998877754

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.04  E-value=0.2  Score=48.71  Aligned_cols=123  Identities=13%  Similarity=0.200  Sum_probs=76.3

Q ss_pred             HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCCe
Q 015614          259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDGK  331 (403)
Q Consensus       259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g~  331 (403)
                      ..++++|++.....++.    +++.+.++.+ .++...|+-|-+|+...+-  ..++.++|. +.+-..+-.-    -|+
T Consensus        54 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g~  128 (282)
T PRK14180         54 KACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE-KDVDGFHPTN----VGR  128 (282)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc-ccccccChhh----HHH
Confidence            46789999887666654    3566777777 4577999999999752221  122222221 1111111100    011


Q ss_pred             E-EE-----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          332 L-IG-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       332 l-~G-----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      + .|     .-.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+.|+.|+++.+
T Consensus       129 l~~g~~~~~~PcTp~aii~lL~~y-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs  190 (282)
T PRK14180        129 LQLRDKKCLESCTPKGIMTMLREY-------------GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR  190 (282)
T ss_pred             HhcCCCCCcCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcC
Confidence            1 12     122345666666543             25788999999997766 99999999999999988865

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.00  E-value=0.26  Score=48.10  Aligned_cols=123  Identities=15%  Similarity=0.230  Sum_probs=75.3

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .++.+.|+-|-+|+...+  ...++.++|. +.+-..+..-    -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  127 (285)
T PRK14191         53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN-KDVDGFHPLN----IG  127 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccChhh----HH
Confidence            356789999887666653    3577777777 457899999999974211  1111112211 1111111100    01


Q ss_pred             eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcch-hHHHHHHHHHHHCCCeEEEEe
Q 015614          331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFD  398 (403)
Q Consensus       331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaG-Gaarai~~al~~~g~~i~v~n  398 (403)
                      ++ .|    .-.--.|++.-|+..             +.+++||+++|+|.| -+++.++.-|.+.|+.|+++.
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h  188 (285)
T PRK14191        128 KLCSQLDGFVPATPMGVMRLLKHY-------------HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCH  188 (285)
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEe
Confidence            11 11    113345666666543             357889999999988 679999999999999888875

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=93.94  E-value=3.1  Score=38.72  Aligned_cols=117  Identities=16%  Similarity=0.197  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV  102 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv  102 (403)
                      .+...-.+.+...|+.++|+  +      ..+.++.+++..++|++.-+|..-++...-.+  .+.+.++.+.+.|+++|
T Consensus        27 ~~i~~~a~~~~~~G~~~~~~--~------~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig--~~~~~~~~a~~aGad~I   96 (219)
T cd04729          27 EIMAAMALAAVQGGAVGIRA--N------GVEDIRAIRARVDLPIIGLIKRDYPDSEVYIT--PTIEEVDALAAAGADII   96 (219)
T ss_pred             HHHHHHHHHHHHCCCeEEEc--C------CHHHHHHHHHhCCCCEEEEEecCCCCCCceeC--CCHHHHHHHHHcCCCEE
Confidence            34455556667789999885  2      12467777777899998766643222111011  13456688899999998


Q ss_pred             EEeccc---cc-hHHHHHH-hccCC-CcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          103 DFELKV---AS-NILGKQY-SSHQS-GTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       103 DiEl~~---~~-~~~~~l~-~~~~~-~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      =++...   +. +...++. ..++. ...++...|+      .++.    .++.+.|+|++++
T Consensus        97 ~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t------~~ea----~~a~~~G~d~i~~  149 (219)
T cd04729          97 ALDATDRPRPDGETLAELIKRIHEEYNCLLMADIST------LEEA----LNAAKLGFDIIGT  149 (219)
T ss_pred             EEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCC------HHHH----HHHHHcCCCEEEc
Confidence            776543   22 1222232 22222 3667776552      2333    5566789999875

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=93.94  E-value=4.2  Score=35.87  Aligned_cols=125  Identities=16%  Similarity=0.101  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCc----hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPG----KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (403)
                      +.....++.+.+.|+|+++++..........    +.+..+++..+.|+++.+.....       .+......+.+.+.|
T Consensus        12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~g   84 (200)
T cd04722          12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDA-------AAAVDIAAAAARAAG   84 (200)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCc-------hhhhhHHHHHHHHcC
Confidence            4445555566677899999998765543221    13566666678999988764321       111111135667789


Q ss_pred             CcEEEEecccc------chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614           99 ADYVDFELKVA------SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus        99 ~~yvDiEl~~~------~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~  163 (403)
                      +++|.+-....      .+.++.++... ++..++...|......   ..     .+.+.|+|.+.+....
T Consensus        85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~---~~-----~~~~~g~d~i~~~~~~  146 (200)
T cd04722          85 ADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELA---AA-----AAEEAGVDEVGLGNGG  146 (200)
T ss_pred             CCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccc---hh-----hHHHcCCCEEEEcCCc
Confidence            99998877763      33444444221 3678888887532111   11     1567799999876543

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=93.84  E-value=0.063  Score=52.89  Aligned_cols=37  Identities=19%  Similarity=0.098  Sum_probs=32.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHH-CCC-eEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~-~g~-~i~v~nR~~~k  403 (403)
                      ..++++|+|+|+.|++.+.++.. .+. +|+|+||+++|
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~  162 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS  162 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH
Confidence            45799999999999999999975 577 89999998653

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.82  E-value=0.079  Score=53.39  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            456899999999999999999999999 99999876

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=93.76  E-value=0.11  Score=39.23  Aligned_cols=29  Identities=34%  Similarity=0.485  Sum_probs=26.1

Q ss_pred             EEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          373 LAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       373 ilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      |+|+|-++.++++.|.+.|.+|+|+.|+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence            79999999999999999999999999864

...

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.76  E-value=0.15  Score=39.54  Aligned_cols=32  Identities=25%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             eEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       370 ~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +++|+|+|-.|--++..|+++|.+|+++.|..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence            58999999999999999999999999999864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.73  E-value=0.38  Score=46.88  Aligned_cols=124  Identities=16%  Similarity=0.248  Sum_probs=76.4

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .+++..|+-|-+|+...+  ...++.++|. +.+-..+..-    -|
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  129 (284)
T PRK14177         55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE-KDVDGVTTLS----FG  129 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cccccCChhh----HH
Confidence            457889999988766653    3566677777 457899999999975221  1111111111 1111111100    01


Q ss_pred             eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      ++ .|    .-.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+.|+.|+++..
T Consensus       130 ~l~~g~~~~~PcTp~avi~ll~~y-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs  191 (284)
T PRK14177        130 KLSMGVETYLPCTPYGMVLLLKEY-------------GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHS  191 (284)
T ss_pred             HHHcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence            11 11    122346777766543             35789999999997666 99999999999999999873

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=93.70  E-value=3.6  Score=40.21  Aligned_cols=121  Identities=18%  Similarity=0.170  Sum_probs=77.8

Q ss_pred             HHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecccc------------------chHHHHHH
Q 015614           56 LEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVA------------------SNILGKQY  117 (403)
Q Consensus        56 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~------------------~~~~~~l~  117 (403)
                      +..+.+...+|+++..-    +|   ++.....+..++.++.|+.-|-||-...                  ++..+.+.
T Consensus        70 ~~~I~~a~~~Pv~~D~d----~G---g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~  142 (285)
T TIGR02320        70 VEFMFDVTTKPIILDGD----TG---GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIR  142 (285)
T ss_pred             HHHHHhhcCCCEEEecC----CC---CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHH
Confidence            33444567999999854    44   3566677788999999999999976431                  12233343


Q ss_pred             ---hcc-CCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc--CCCCEE
Q 015614          118 ---SSH-QSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH--CQVPII  184 (403)
Q Consensus       118 ---~~~-~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~--~~~p~i  184 (403)
                         ..+ .... +|...-| +...-..++..++.+...+.|||.+=+-....+.++..++.+....  .+.|++
T Consensus       143 Aa~~a~~~~~~-~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~  215 (285)
T TIGR02320       143 AGKDAQTTEDF-MIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV  215 (285)
T ss_pred             HHHHhccCCCe-EEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence               221 2223 3333322 2112246888888999999999999876556788888888776543  245764

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=93.67  E-value=3.3  Score=36.99  Aligned_cols=93  Identities=13%  Similarity=0.181  Sum_probs=64.1

Q ss_pred             CeeEEEecccCC----HHHHHHHHHHHHhcCCCEEEEEecCCCCCC--C---chHHHHHHhc--CCCcEEEEeecCCCCC
Q 015614           10 TTMICAPLMAQS----VEQVLSNMYQAKAEGADVVEIRLDCINNFQ--P---GKDLEIILTK--KPLPVLIVYRPKWAGG   78 (403)
Q Consensus        10 ~~~icv~l~~~~----~~e~~~~~~~~~~~~~D~vElRlD~l~~~~--~---~~~l~~l~~~--~~~PiI~T~R~~~eGG   78 (403)
                      +..+.+-+...+    .++...+++.+.+.|+|++.+-..+....+  .   .+.++.+++.  .++|+++..++...  
T Consensus        48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--  125 (201)
T cd00945          48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL--  125 (201)
T ss_pred             CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC--
Confidence            455567777777    899999999999999999999877653322  1   2344455555  48999999886533  


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015614           79 LYEGDEHKRLEALHLAEDLGADYVDFELK  107 (403)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~~g~~yvDiEl~  107 (403)
                         .+.+.-.++.+.+...|+++|..-..
T Consensus       126 ---~~~~~~~~~~~~~~~~g~~~iK~~~~  151 (201)
T cd00945         126 ---KTADEIAKAARIAAEAGADFIKTSTG  151 (201)
T ss_pred             ---CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence               34445555555556678999876554

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.64  E-value=0.47  Score=46.23  Aligned_cols=125  Identities=17%  Similarity=0.230  Sum_probs=77.2

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++...++.+ .++.+.|+-|-.|+...+-  ..++.++|. +.+-..+..-    -|
T Consensus        52 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~N----~g  126 (282)
T PRK14169         52 QRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD-KDVDGFSPVS----VG  126 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChhh----hH
Confidence            456889999987766654    2566667666 4578999999999753221  122222221 1111111100    01


Q ss_pred             eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEe-cC
Q 015614          331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFD-ID  400 (403)
Q Consensus       331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~n-R~  400 (403)
                      +++ |    .-.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|...|+.|+++. ||
T Consensus       127 ~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T  190 (282)
T PRK14169        127 RLWANEPTVVASTPYGIMALLDAY-------------DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT  190 (282)
T ss_pred             HHhcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC
Confidence            111 0    122345666666543             35789999999997666 9999999999999999985 44

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.63  E-value=0.54  Score=45.76  Aligned_cols=124  Identities=18%  Similarity=0.254  Sum_probs=74.9

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ....+++|++..-..++.    +++.+.++.+ .++...|+-|-.|....+-  ..++.++|. +.+-..+-.-    -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  127 (281)
T PRK14183         53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK-KDVDGFHPYN----VG  127 (281)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch-hcccccChhh----hh
Confidence            356789999876555533    3566667767 4678999999999752211  112222221 1111111100    01


Q ss_pred             eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcch-hHHHHHHHHHHHCCCeEEEEec
Q 015614          331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaG-Gaarai~~al~~~g~~i~v~nR  399 (403)
                      ++ .|    .-.--.|++.-|++.             +.+++||+++|+|.| -.++.++.-|.+.|+.|+++..
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs  189 (281)
T PRK14183        128 RLVTGLDGFVPCTPLGVMELLEEY-------------EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI  189 (281)
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence            11 11    111255676666543             367899999999987 5599999999999998888763

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=93.62  E-value=0.34  Score=47.50  Aligned_cols=83  Identities=18%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcC-CCEEEEEecC----------CCCCC-CchHHHHHHhcCCCcEEEEeecCCCCCCC
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEG-ADVVEIRLDC----------INNFQ-PGKDLEIILTKKPLPVLIVYRPKWAGGLY   80 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~-~D~vElRlD~----------l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~   80 (403)
                      +.++|.+.+.+++..-++.+.+.| +|.|||-+=+          ..+.+ ..+.++.+++..++|+.+-++..      
T Consensus        94 ~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~------  167 (301)
T PRK07259         94 IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN------  167 (301)
T ss_pred             EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC------
Confidence            568999999999998888887888 9999995522          11111 02344556666689999887741      


Q ss_pred             CCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           81 EGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        81 ~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                         .++-.++.+.+.+.|+++|++
T Consensus       168 ---~~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        168 ---VTDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             ---chhHHHHHHHHHHcCCCEEEE
Confidence               235567778888899999876

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.59  E-value=0.11  Score=53.18  Aligned_cols=39  Identities=36%  Similarity=0.577  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|++++|+|.|..|+.++..++.+|++|+++++++.
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            346799999999999999999999999999999988764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=93.59  E-value=0.098  Score=47.35  Aligned_cols=38  Identities=18%  Similarity=0.336  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++|+++|+|+|-+|--+++.|.+.|.+|+++-|++.
T Consensus       164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            46789999999999999999999999989999999874

...

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=93.56  E-value=6  Score=36.44  Aligned_cols=143  Identities=14%  Similarity=0.100  Sum_probs=86.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CC-cEEEEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 015614           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PL-PVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (403)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~-PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (403)
                      ..+.+++.+.++++.+.++|.+=+.-         ..+...++.. +. ..+-+.-.-+.|.   ...+.+..-.+.+++
T Consensus        13 ~~t~~~i~~~~~~a~~~~~~av~v~p---------~~v~~~~~~l~~~~~~v~~~~~fp~g~---~~~~~k~~eve~A~~   80 (203)
T cd00959          13 DATEEDIRKLCDEAKEYGFAAVCVNP---------CFVPLAREALKGSGVKVCTVIGFPLGA---TTTEVKVAEAREAIA   80 (203)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcH---------HHHHHHHHHcCCCCcEEEEEEecCCCC---CcHHHHHHHHHHHHH
Confidence            44678888888888777899987642         1333333322 22 3333333333333   234556666789999


Q ss_pred             cCCcEEEEecccc-------chHHH---HHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--ee-
Q 015614           97 LGADYVDFELKVA-------SNILG---KQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--FS-  162 (403)
Q Consensus        97 ~g~~yvDiEl~~~-------~~~~~---~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia--~~-  162 (403)
                      .|++-||+=++..       +...+   ++.. .+.-..|+|+-.-..    +.+++....+.+.+.|||++|.-  .. 
T Consensus        81 ~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l----~~~~i~~a~ria~e~GaD~IKTsTG~~~  156 (203)
T cd00959          81 DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL----TDEEIIKACEIAIEAGADFIKTSTGFGP  156 (203)
T ss_pred             cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC----CHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence            9999999966543       11222   3332 222335555554322    35678888888999999999987  43 


Q ss_pred             -cCCHhHHHHHHHHhc
Q 015614          163 -VNDITEIARIFQLLS  177 (403)
Q Consensus       163 -~~~~~D~~~ll~~~~  177 (403)
                       ..+++|+..+.+...
T Consensus       157 ~~at~~~v~~~~~~~~  172 (203)
T cd00959         157 GGATVEDVKLMKEAVG  172 (203)
T ss_pred             CCCCHHHHHHHHHHhC
Confidence             345777766666644

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=93.55  E-value=0.067  Score=53.16  Aligned_cols=37  Identities=22%  Similarity=0.406  Sum_probs=31.5

Q ss_pred             CCCeEEEEcchhHHHHHHHHHH-HCCC-eEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAK-SRGA-RVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~-~~g~-~i~v~nR~~~k  403 (403)
                      ..++++|+|+|+.|++.+.++. ..++ +|+|+||+++|
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~  164 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK  164 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH
Confidence            3578999999999999998876 4578 89999998754

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=93.53  E-value=0.092  Score=53.21  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            446789999999999999999999999 99999876

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=93.50  E-value=2.9  Score=41.51  Aligned_cols=150  Identities=13%  Similarity=0.211  Sum_probs=88.9

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----C--------CC---chHHHHHHhcCCCcEEEEeecCCCC
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN----F--------QP---GKDLEIILTKKPLPVLIVYRPKWAG   77 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~--------~~---~~~l~~l~~~~~~PiI~T~R~~~eG   77 (403)
                      +.+.|.+.+.+++..-++.+.+.|+|.|||-+-+=..    .        ++   .+.+..+++..+.|+.+-+|.    
T Consensus        67 ~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~----  142 (321)
T PRK10415         67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT----  142 (321)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc----
Confidence            4589999999999877776667899999998776310    0        11   133445555668898888883    


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614           78 GLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus        78 G~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      | |..+.+...++.+.+.+.|+++|.+.-....           .         .+.++++++.+.++.+.     .++.
T Consensus       143 G-~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~-----------~---------~~~G~a~~~~i~~ik~~-----~~iP  196 (321)
T PRK10415        143 G-WAPEHRNCVEIAQLAEDCGIQALTIHGRTRA-----------C---------LFNGEAEYDSIRAVKQK-----VSIP  196 (321)
T ss_pred             c-ccCCcchHHHHHHHHHHhCCCEEEEecCccc-----------c---------ccCCCcChHHHHHHHHh-----cCCc
Confidence            3 2233445678888888999999987532210           0         01233444333333221     1332


Q ss_pred             EEEee-cCCHhHHHHHHHHhccCCCCEEEEEcCccchhh
Q 015614          158 KLVFS-VNDITEIARIFQLLSHCQVPIIAYSVGERGLVS  195 (403)
Q Consensus       158 Kia~~-~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~S  195 (403)
                      =++.= ..|.+|..++++.   .+...+.++.|..+.+.
T Consensus       197 VI~nGgI~s~~da~~~l~~---~gadgVmiGR~~l~nP~  232 (321)
T PRK10415        197 VIANGDITDPLKARAVLDY---TGADALMIGRAAQGRPW  232 (321)
T ss_pred             EEEeCCCCCHHHHHHHHhc---cCCCEEEEChHhhcCCh
Confidence            22211 1366777666644   34567777777766443

>PRK06153 hypothetical protein; Provisional

Probab=93.49  E-value=0.074  Score=53.84  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      ++++|+|+|+||+|..++..|++.|+ +|++++-+
T Consensus       175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            46789999999999999999999999 99998754

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=93.48  E-value=0.24  Score=51.66  Aligned_cols=39  Identities=36%  Similarity=0.508  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.||+++|+|.|..||+++..|...|++|+++++++.
T Consensus       250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~  288 (476)
T PTZ00075        250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI  288 (476)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            567899999999999999999999999999999988753

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=93.41  E-value=5.3  Score=38.57  Aligned_cols=127  Identities=16%  Similarity=0.187  Sum_probs=77.6

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc---------------------hHHHHHHhcCCCc-EEE
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTKKPLP-VLI   69 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---------------------~~l~~l~~~~~~P-iI~   69 (403)
                      +--++.-.|+.+.....+....+.|||++||-+-+-++.-+.                     +.++.+|+..+.| ++.
T Consensus        18 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm   97 (263)
T CHL00200         18 IPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIF   97 (263)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE
Confidence            344677788999988888888889999999998876654221                     3344555455677 444


Q ss_pred             EeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHH
Q 015614           70 VYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRM  149 (403)
Q Consensus        70 T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~  149 (403)
                      |+-+.-    +....   -++++.+.+.|++.|                        |+  ||.   | .+|..+.++.+
T Consensus        98 ~Y~N~i----~~~G~---e~F~~~~~~aGvdgv------------------------ii--pDL---P-~ee~~~~~~~~  140 (263)
T CHL00200         98 TYYNPV----LHYGI---NKFIKKISQAGVKGL------------------------II--PDL---P-YEESDYLISVC  140 (263)
T ss_pred             ecccHH----HHhCH---HHHHHHHHHcCCeEE------------------------Ee--cCC---C-HHHHHHHHHHH
Confidence            443210    01011   224455555555442                        22  331   2 36777788888


Q ss_pred             HHcCCCEEEEEeecCCHhHHHHHHHH
Q 015614          150 QATGADIIKLVFSVNDITEIARIFQL  175 (403)
Q Consensus       150 ~~~gadivKia~~~~~~~D~~~ll~~  175 (403)
                      ++.|-+.+=++....+.+....+.+.
T Consensus       141 ~~~gi~~I~lv~PtT~~eri~~i~~~  166 (263)
T CHL00200        141 NLYNIELILLIAPTSSKSRIQKIARA  166 (263)
T ss_pred             HHcCCCEEEEECCCCCHHHHHHHHHh
Confidence            88888888777666656666555554

>PRK08223 hypothetical protein; Validated

Probab=93.41  E-value=0.092  Score=51.24  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            456889999999999999999999999 99999865

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=93.34  E-value=1.2  Score=43.26  Aligned_cols=137  Identities=18%  Similarity=0.237  Sum_probs=86.8

Q ss_pred             eeeccCCcccCCHHHHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccch-----HHHHcccccCC
Q 015614          242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDEVH  311 (403)
Q Consensus       242 ~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K-----~~v~~~~d~~~  311 (403)
                      -++|+.-+....=.+-....+++|+...+..++.    +++.+.+..+ .++.+.|.-|-.|.=     +.++..++-- 
T Consensus        36 ilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~-  114 (283)
T COG0190          36 ILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPE-  114 (283)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcC-
Confidence            3556544333333355678899999988777653    3566667666 568899999999963     2333222110 


Q ss_pred             HHHhhccceeEEEEeccCCeEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHH
Q 015614          312 PLAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAF  385 (403)
Q Consensus       312 ~~A~~igavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~  385 (403)
                      ..+.-+.-.|.       |++. +    .-.--.|++.-|++.             +.++.|++++|+|.+.. ||.++.
T Consensus       115 KDVDG~hp~N~-------g~L~~~~~~~~PCTp~gi~~ll~~~-------------~i~l~Gk~~vVVGrS~iVGkPla~  174 (283)
T COG0190         115 KDVDGFHPYNL-------GKLAQGEPGFLPCTPAGIMTLLEEY-------------GIDLRGKNVVVVGRSNIVGKPLAL  174 (283)
T ss_pred             CCccccChhHh-------cchhcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHHH
Confidence            00000001111       2332 1    123356888887764             25788999999998776 999999


Q ss_pred             HHHHCCCeEEEEec
Q 015614          386 GAKSRGARVVIFDI  399 (403)
Q Consensus       386 al~~~g~~i~v~nR  399 (403)
                      -|...++.|+|++.
T Consensus       175 lL~~~naTVtvcHs  188 (283)
T COG0190         175 LLLNANATVTVCHS  188 (283)
T ss_pred             HHHhCCCEEEEEcC
Confidence            99999999999875

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.30  E-value=0.47  Score=46.23  Aligned_cols=124  Identities=17%  Similarity=0.250  Sum_probs=76.5

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ..+++++|++.....++.    +++.+.++.+ .++.+.|+-|-.|....+-  ..++.++|. +.+-..+..-    -|
T Consensus        52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  126 (282)
T PRK14182         52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA-KDADGFHPFN----VG  126 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcCCCCHhH----HH
Confidence            356789999987766653    3566777767 4578999999999752211  111111111 1111111100    01


Q ss_pred             eEE-E-----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          331 KLI-G-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       331 ~l~-G-----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      +++ |     .-.--.|++.-|+..             +.+++||+++|+|-+.. +|.++.-|.+.|+.|+++..
T Consensus       127 ~l~~g~~~~~~PcTp~avi~ll~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs  189 (282)
T PRK14182        127 ALSIGIAGVPRPCTPAGVMRMLDEA-------------RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHS  189 (282)
T ss_pred             HHhCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence            111 1     112256777776553             25788999999997766 99999999999999988874

>PLN02494 adenosylhomocysteinase

Probab=93.25  E-value=0.14  Score=53.15  Aligned_cols=39  Identities=36%  Similarity=0.551  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|++++|+|.|..|++++..+..+|++|.++++++.
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            446799999999999999999999999999999998864

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.13  E-value=0.51  Score=46.02  Aligned_cols=123  Identities=16%  Similarity=0.281  Sum_probs=74.6

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ....+++|++.....++.    +++.+.++.+ .++...|.-|-.|.-..+  ...++.++|. +.+-..+-.-    -|
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~-KDVDGl~~~N----~g  128 (284)
T PRK14179         54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK-KDVDGFHPMN----TG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-ccccccCHhh----HH
Confidence            357889999987776663    3566666666 457899999999974222  1111111110 1111110000    01


Q ss_pred             eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEe
Q 015614          331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD  398 (403)
Q Consensus       331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~n  398 (403)
                      +++ |    .-.--.|++.-|+..             +.+++||+++|+|. |=+++.++.-|.+.|+.|+++.
T Consensus       129 ~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~  189 (284)
T PRK14179        129 HLWSGRPVMIPCTPAGIMEMFREY-------------NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH  189 (284)
T ss_pred             HHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence            111 0    112335666666543             35789999999998 6669999999999999999884

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=93.04  E-value=1.8  Score=39.46  Aligned_cols=109  Identities=14%  Similarity=0.199  Sum_probs=65.8

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecC---CCCCCC-chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC---INNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL   88 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~---l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (403)
                      |.++|..-|..++...++.+.+.|+|+|++|+=-   ...... .+.++.+++..+.|+.+.+-..        +.+.  
T Consensus         2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~--------d~~~--   71 (211)
T cd00429           2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVE--------NPER--   71 (211)
T ss_pred             ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeC--------CHHH--
Confidence            5678888899888888999989999999998521   121111 2456677765556665444432        1222  


Q ss_pred             HHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccC
Q 015614           89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNL  132 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~  132 (403)
                       .++.+.+.|+++|=+=....+...+.+...++.+.+++++.|.
T Consensus        72 -~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~  114 (211)
T cd00429          72 -YIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNP  114 (211)
T ss_pred             -HHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecC
Confidence             3566678899986443222222222222233457788888863

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=92.98  E-value=0.68  Score=43.15  Aligned_cols=89  Identities=21%  Similarity=0.349  Sum_probs=61.5

Q ss_pred             eeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCC---------C---CCC---chHHHHHHhcCCCcEEEEeecCC
Q 015614           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN---------N---FQP---GKDLEIILTKKPLPVLIVYRPKW   75 (403)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~---------~---~~~---~~~l~~l~~~~~~PiI~T~R~~~   75 (403)
                      ..+.++|.+.+.+++.+.++.+.+.|+|.|||-+-+-.         .   .++   .+.++.+++....|+.+-+|..+
T Consensus        55 ~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~  134 (231)
T cd02801          55 RPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW  134 (231)
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc
Confidence            34568999999999999888887779999999765411         0   011   23455566656678887777432


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614           76 AGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (403)
Q Consensus        76 eGG~~~~~~~~~~~ll~~~~~~g~~yvDiE  105 (403)
                      +     . +++-.++++.+.+.|+++|.+-
T Consensus       135 ~-----~-~~~~~~~~~~l~~~Gvd~i~v~  158 (231)
T cd02801         135 D-----D-EEETLELAKALEDAGASALTVH  158 (231)
T ss_pred             C-----C-chHHHHHHHHHHHhCCCEEEEC
Confidence            1     1 1456677788888899998763

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=92.97  E-value=1.9  Score=42.09  Aligned_cols=87  Identities=18%  Similarity=0.244  Sum_probs=51.2

Q ss_pred             CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccc------------hHHHHHHhccCCCcEEEEec
Q 015614           63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS------------NILGKQYSSHQSGTRFIVSC  130 (403)
Q Consensus        63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~------------~~~~~l~~~~~~~~kiI~S~  130 (403)
                      .+.|+++.++..        +.+++.+..+.+.+.|+|+|+|-+..+.            ++..+++...+..+.+-++.
T Consensus        88 ~~~p~ivsi~g~--------~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v  159 (296)
T cd04740          88 FGTPVIASIAGS--------TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV  159 (296)
T ss_pred             CCCcEEEEEecC--------CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence            478999999832        4577888888888889999999665432            22222321111111222221


Q ss_pred             cCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614          131 NLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus       131 H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      -   -+|+.++..++.+.+.+.|+|.+.+.
T Consensus       160 K---l~~~~~~~~~~a~~~~~~G~d~i~~~  186 (296)
T cd04740         160 K---LTPNVTDIVEIARAAEEAGADGLTLI  186 (296)
T ss_pred             E---eCCCchhHHHHHHHHHHcCCCEEEEE
Confidence            1   13444556666777777777776554

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=92.95  E-value=3  Score=37.28  Aligned_cols=107  Identities=21%  Similarity=0.212  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc---CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK---KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~---~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      .++...++.+.+.|++.|++|+--.......+.+..+++.   .+.++++.            +   +   ++.+.+.|+
T Consensus        12 ~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~------------~---~---~~~a~~~g~   73 (196)
T cd00564          12 EDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIN------------D---R---VDLALAVGA   73 (196)
T ss_pred             chHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------C---h---HHHHHHcCC
Confidence            3555667777778999999997533321111233334332   35677743            1   1   345678899


Q ss_pred             cEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       100 ~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.+-++.....  ...+...++.+.++-+|.|+      .++    ..++...|+|++.+
T Consensus        74 ~~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~t------~~~----~~~~~~~g~d~i~~  121 (196)
T cd00564          74 DGVHLGQDDLP--VAEARALLGPDLIIGVSTHS------LEE----ALRAEELGADYVGF  121 (196)
T ss_pred             CEEecCcccCC--HHHHHHHcCCCCEEEeeCCC------HHH----HHHHhhcCCCEEEE
Confidence            99887753322  11222233456788888873      233    34556679999976

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.90  E-value=0.15  Score=49.55  Aligned_cols=38  Identities=37%  Similarity=0.427  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ....+++++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3456799999996 9999999999999999999999975

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=92.89  E-value=0.095  Score=41.84  Aligned_cols=33  Identities=33%  Similarity=0.411  Sum_probs=28.8

Q ss_pred             eEEEEcchhHHHHHHHHHHHCC---CeEEEE-ecCCC
Q 015614          370 MFVLAGAGGAGRALAFGAKSRG---ARVVIF-DIDFG  402 (403)
Q Consensus       370 ~~lilGaGGaarai~~al~~~g---~~i~v~-nR~~~  402 (403)
                      ++.|||+|.+|.+++..|.+.|   .+|+++ +|+++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~   37 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE   37 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence            4788999999999999999999   589865 88865

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.89  E-value=0.65  Score=45.37  Aligned_cols=123  Identities=17%  Similarity=0.309  Sum_probs=74.8

Q ss_pred             HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCCe
Q 015614          259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDGK  331 (403)
Q Consensus       259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g~  331 (403)
                      ...+++|++.....++.    +++.+.++.+ .+++..|+-|-+|.-..+  ...++.++| .+.+-..+..-    -|+
T Consensus        52 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N----~g~  126 (287)
T PRK14173         52 RQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDP-LKDVDGFHPLN----VGR  126 (287)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhh----hHH
Confidence            46789999988777753    3567777777 456799999999974211  111111111 01111111110    011


Q ss_pred             EE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          332 LI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       332 l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      ++ |    .-.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+.|+.|+++.+
T Consensus       127 l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs  187 (287)
T PRK14173        127 LWMGGEALEPCTPAGVVRLLKHY-------------GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHS  187 (287)
T ss_pred             HhcCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCC
Confidence            11 1    122345666665542             35789999999997666 99999999999999988764

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.88  E-value=0.4  Score=46.70  Aligned_cols=123  Identities=17%  Similarity=0.254  Sum_probs=75.3

Q ss_pred             HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCCe
Q 015614          259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDGK  331 (403)
Q Consensus       259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g~  331 (403)
                      ...+++|++.....++.    +++.+.++.+ .+++..|+-|-+|....+-  ..+..++|. +.+-..+.+-    -|+
T Consensus        53 k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g~  127 (282)
T PRK14166         53 KACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS-KDVDGFHPIN----VGY  127 (282)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----hHH
Confidence            45788999987666653    3566666666 4578999999999753221  111111111 1111111110    011


Q ss_pred             E-EE-----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          332 L-IG-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       332 l-~G-----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      + .|     .-.--.|++.-|+..             +.++.||+++|+|-+.. +|.++.-|.+.|+.|+++.+
T Consensus       128 l~~g~~~~~~PcTp~avi~lL~~y-------------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs  189 (282)
T PRK14166        128 LNLGLESGFLPCTPLGVMKLLKAY-------------EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHI  189 (282)
T ss_pred             HhcCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence            1 11     112245666666543             25788999999997766 99999999999999998775

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.74  E-value=0.71  Score=45.00  Aligned_cols=124  Identities=18%  Similarity=0.264  Sum_probs=75.3

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ....+++|++.....++.    +++.+.++.+ .++...|+-|-.|.-..+-  ..++.++|. +.+-..+..-    -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~-KDVDGl~p~N----~g  127 (284)
T PRK14170         53 QKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD-KDVDGFHPVN----VG  127 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcccCChhh----hh
Confidence            356789999887666653    2566667766 4578999999999742211  111111111 1111111100    01


Q ss_pred             eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      ++ .|    .-.--.|++.-|+..             +.++.||+++|+|.+.. +|.++.-|.+.|+.|+++..
T Consensus       128 ~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs  189 (284)
T PRK14170        128 NLFIGKDSFVPCTPAGIIELIKST-------------GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHS  189 (284)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence            11 01    112256777766543             35789999999997776 99999999999999888753

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=92.74  E-value=14  Score=39.86  Aligned_cols=205  Identities=15%  Similarity=0.133  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614           22 VEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (403)
Q Consensus        22 ~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (403)
                      .++.+.-++...+.|.+.+|.-    .|.   +-..++.+.+..+++.. +.++-.-+|..+-=|..+.+++-..+.++.
T Consensus        25 t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~  104 (592)
T PRK09282         25 TEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEK  104 (592)
T ss_pred             HHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHH
Confidence            3444444555556799999995    553   22224556777777663 678888888766667666677777788999


Q ss_pred             HHHcCCcEEEEeccccc--hHHHHHHhccCCCcEEE--EeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015614           94 AEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFI--VSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--D  165 (403)
Q Consensus        94 ~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI--~S~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~  165 (403)
                      +.+.|++.+-|=...++  +..+.+...++.+..+-  +||- +  .|  +.+.+.+..+++.+.|+|.+=|+=|.-  +
T Consensus       105 A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t-~--~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~  181 (592)
T PRK09282        105 AAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYT-T--SPVHTIEKYVELAKELEEMGCDSICIKDMAGLLT  181 (592)
T ss_pred             HHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEec-c--CCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcC
Confidence            99999998877655433  23333332333344443  3332 2  34  567899999999999999988886664  4


Q ss_pred             HhHHHHHHHHhcc-CCCCEEEE---EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          166 ITEIARIFQLLSH-CQVPIIAY---SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       166 ~~D~~~ll~~~~~-~~~p~i~~---~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      +.+...+.+.+.+ .+.|+ .+   +..-.+..+-+..-..|....-+++.. +--.||++++++...++
T Consensus       182 P~~~~~lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~agn~~~e~vv~~L~  250 (592)
T PRK09282        182 PYAAYELVKALKEEVDLPV-QLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFGTSQPPTESMVAALK  250 (592)
T ss_pred             HHHHHHHHHHHHHhCCCeE-EEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCCCcCCHhHHHHHHHHH
Confidence            7788888777543 24443 22   222333333333333344333333321 11236777777665554

>PLN02591 tryptophan synthase

Probab=92.71  E-value=9.7  Score=36.50  Aligned_cols=85  Identities=14%  Similarity=0.120  Sum_probs=56.1

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHHhcCCCc-EEEE
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTKKPLP-VLIV   70 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~~~~~~P-iI~T   70 (403)
                      -.++.-.|+.+..++.++...+.|+|++||-+-+-++.-+                     .+.++.+|+..+.| ++.|
T Consensus         6 ~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~   85 (250)
T PLN02591          6 PYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFT   85 (250)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEe
Confidence            3466778999999888888788999999999887665422                     13445566556789 4555


Q ss_pred             eecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                      +-+.-    +..   -.-++++.+.+.|++-+=|
T Consensus        86 Y~N~i----~~~---G~~~F~~~~~~aGv~Gvii  112 (250)
T PLN02591         86 YYNPI----LKR---GIDKFMATIKEAGVHGLVV  112 (250)
T ss_pred             cccHH----HHh---HHHHHHHHHHHcCCCEEEe
Confidence            54321    111   2234678888888775533

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=92.68  E-value=3.6  Score=42.49  Aligned_cols=134  Identities=16%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCc-EEEEeecCCCCCCCCCCHHHHH
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLP-VLIVYRPKWAGGLYEGDEHKRL   88 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~P-iI~T~R~~~eGG~~~~~~~~~~   88 (403)
                      +|++++-+-..++++.+..++.+.+.|+|.||.-...... ...+.++.+++....+ ++..+|.-.. |      ..  
T Consensus         3 ~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~-~~~~~i~~l~~~~~~~~ii~D~kl~d~-g------~~--   72 (430)
T PRK07028          3 RPILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKS-EGMNAIRTLRKNFPDHTIVADMKTMDT-G------AI--   72 (430)
T ss_pred             CceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHH-hhHHHHHHHHHHCCCCEEEEEeeeccc-h------HH--
Confidence            6889999999999999999999888999999973222111 1124566666654444 4556665422 1      12  


Q ss_pred             HHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614           89 EALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                       .++.+.+.|+++|-+--........+.+ ..++.+.+++.-..   .+++.   .+...++.+.|+|++++-
T Consensus        73 -~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~---s~~t~---~e~~~~a~~~GaD~I~~~  138 (430)
T PRK07028         73 -EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLI---NVPDP---VKRAVELEELGVDYINVH  138 (430)
T ss_pred             -HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEec---CCCCH---HHHHHHHHhcCCCEEEEE
Confidence             4567889999998864322211111122 22234566665211   11111   123466667899999875

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=92.68  E-value=1.1  Score=42.24  Aligned_cols=141  Identities=17%  Similarity=0.128  Sum_probs=82.3

Q ss_pred             eeEEEecccCC----HHHH-----HHHHHHHHhcCCCEEEEEecC---CCCCCC--chHHHHHHh---cCCCcEEEEeec
Q 015614           11 TMICAPLMAQS----VEQV-----LSNMYQAKAEGADVVEIRLDC---INNFQP--GKDLEIILT---KKPLPVLIVYRP   73 (403)
Q Consensus        11 ~~icv~l~~~~----~~e~-----~~~~~~~~~~~~D~vElRlD~---l~~~~~--~~~l~~l~~---~~~~PiI~T~R~   73 (403)
                      +.+|+.+.++.    .+.-     ..+++++++.|||.|.+-+++   ......  .+.+.++++   ...+|+|+-.-.
T Consensus        55 ~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l  134 (236)
T PF01791_consen   55 VKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL  134 (236)
T ss_dssp             SEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE
T ss_pred             cccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            46777776663    4555     688999999999999999998   332211  133444443   358898887554


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc-------ccchHHHHHHhc--cCCCcEEEEeccCCCCCCCHhHHHH
Q 015614           74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDFELK-------VASNILGKQYSS--HQSGTRFIVSCNLDCETPSEEDLGY  144 (403)
Q Consensus        74 ~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~-------~~~~~~~~l~~~--~~~~~kiI~S~H~f~~tp~~~~l~~  144 (403)
                      ..+...-...++.-....+.+.++|+|+|=.+.-       .....++++...  .+++++|.+|     +-++.+++..
T Consensus       135 ~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~s-----GGi~~~~~~~  209 (236)
T PF01791_consen  135 RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKAS-----GGIDAEDFLR  209 (236)
T ss_dssp             CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEE-----SSSSHHHHHH
T ss_pred             CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEe-----CCCChHHHHH
Confidence            3221000012233455566778899999998877       222334444421  2367788888     3445566655


Q ss_pred             HHHHHH---HcCCCE
Q 015614          145 LVSRMQ---ATGADI  156 (403)
Q Consensus       145 ~~~~~~---~~gadi  156 (403)
                      .++.+.   +.||+.
T Consensus       210 ~l~~a~~~i~aGa~~  224 (236)
T PF01791_consen  210 TLEDALEFIEAGADR  224 (236)
T ss_dssp             SHHHHHHHHHTTHSE
T ss_pred             HHHHHHHHHHcCChh
Confidence            555555   778765

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=92.54  E-value=4.2  Score=38.52  Aligned_cols=132  Identities=16%  Similarity=0.183  Sum_probs=82.4

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC-----------C-CC---chHHHHHHhcCCCcEEEEeecCCC
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-----------F-QP---GKDLEIILTKKPLPVLIVYRPKWA   76 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~-----------~-~~---~~~l~~l~~~~~~PiI~T~R~~~e   76 (403)
                      .+.+++.+.+.+++..-++.. ..++|.|||=.-|=.+           . ++   .+.++.++ ..+.|+.+-+|... 
T Consensus        69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~-  145 (231)
T TIGR00736        69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK-ELNKPIFVKIRGNC-  145 (231)
T ss_pred             CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH-cCCCcEEEEeCCCC-
Confidence            467999999999999877775 5689999998776221           0 11   12233333 45889999999642 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccc------hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHH
Q 015614           77 GGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS------NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQ  150 (403)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~------~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~  150 (403)
                            +++...++.+.+.+.|+++|-|+-..+.      +.++++.... +...||++=-    --+.++..++++   
T Consensus       146 ------~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGg----I~s~eda~e~l~---  211 (231)
T TIGR00736       146 ------IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNS----IDDIESAKEMLK---  211 (231)
T ss_pred             ------CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECC----cCCHHHHHHHHH---
Confidence                  2345667888888999999999754432      1233333211 1255676522    223455555553   


Q ss_pred             HcCCCEEEEEe
Q 015614          151 ATGADIIKLVF  161 (403)
Q Consensus       151 ~~gadivKia~  161 (403)
                       +|||-|=++.
T Consensus       212 -~GAd~VmvgR  221 (231)
T TIGR00736       212 -AGADFVSVAR  221 (231)
T ss_pred             -hCCCeEEEcH
Confidence             4888776654

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.45  E-value=0.18  Score=54.91  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++++|+|+|.+|.++++.|.++|.+|+|+.|..
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            357899999999999999999999999999998753

>PRK06196 oxidoreductase; Provisional

Probab=92.43  E-value=0.16  Score=49.76  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            456899999996 88999999999999999999999753

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.35  E-value=1.2  Score=43.76  Aligned_cols=124  Identities=13%  Similarity=0.168  Sum_probs=74.8

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .++...|+-|-.|+...+-  ..++.++|. +.+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (294)
T PRK14187         54 QRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPE-KDVDGFHNEN----VG  128 (294)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----HH
Confidence            356789999987666653    3566666666 4568999999999852110  011111110 1111111000    01


Q ss_pred             eE-EEE------eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          331 KL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       331 ~l-~G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      ++ .|.      -.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+.|+.|+++..
T Consensus       129 ~l~~g~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs  192 (294)
T PRK14187        129 RLFTGQKKNCLIPCTPKGCLYLIKTI-------------TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHS  192 (294)
T ss_pred             HHhCCCCCCCccCcCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCC
Confidence            11 111      12345666666543             25789999999997766 99999999999999988864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=92.24  E-value=0.2  Score=56.88  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+|+|+|||+|.||.++|+.|++.|.+|+|+.|..
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence            358999999999999999999999999999998863

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.24  E-value=0.65  Score=45.61  Aligned_cols=124  Identities=18%  Similarity=0.236  Sum_probs=75.5

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .++...|+-|-+|....+  ...++.++|. +.+-..+..-    -|
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  127 (297)
T PRK14167         53 QRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA-KDVDGFHPEN----VG  127 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-cCcccCChhh----hH
Confidence            456889999987766654    3566777777 457899999999975322  1122222221 1111111110    01


Q ss_pred             eE-EEE----eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHC----CCeEEEEec
Q 015614          331 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSR----GARVVIFDI  399 (403)
Q Consensus       331 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~----g~~i~v~nR  399 (403)
                      ++ .|.    -.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+.    ++.|+++..
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs  193 (297)
T PRK14167        128 RLVAGDARFKPCTPHGIQKLLAAA-------------GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHS  193 (297)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCC
Confidence            11 111    12345666666543             25789999999997766 99999998877    678888753

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=92.21  E-value=6.8  Score=36.18  Aligned_cols=135  Identities=14%  Similarity=0.071  Sum_probs=86.6

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCC-HHHHH
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGD-EHKRL   88 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~-~~~~~   88 (403)
                      .|.+|+.+-..|.+++++.++.. ....|+||.-.+++..+.+ +.++.+|+.+  ++++-+..      .+.. ...+ 
T Consensus         3 ~~~l~~alD~~~~~~~~~~~~~~-~~~~~~vk~g~~l~~~~G~-~~v~~ir~~~--~i~~D~k~------~di~~~~~~-   71 (215)
T PRK13813          3 DSRIILALDVTDRERALKIAEEL-DDYVDAIKVGWPLVLASGL-GIIEELKRYA--PVIADLKV------ADIPNTNRL-   71 (215)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHhc-cccCCEEEEcHHHHHhhCH-HHHHHHHhcC--CEEEEeec------cccHHHHHH-
Confidence            46789999999999999988775 4447899999999886654 4677787654  45543332      1111 2222 


Q ss_pred             HHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCC-----CHhHHHHHHHHHHHcCCCEEE
Q 015614           89 EALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETP-----SEEDLGYLVSRMQATGADIIK  158 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp-----~~~~l~~~~~~~~~~gadivK  158 (403)
                       ..+.+++.|+|+|-+=.....+.+..+. ..++.+.++.+..+- . ++     -.+.+........+.|++..|
T Consensus        72 -~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~-~-~~~~~~~~~~~~~~v~~m~~e~G~~g~~  144 (215)
T PRK13813         72 -ICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEM-S-HPGALEFIQPHADKLAKLAQEAGAFGVV  144 (215)
T ss_pred             -HHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeC-C-CCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence             2367788999999987776444333333 334556777664432 1 22     123455566666778988887

>PLN02780 ketoreductase/ oxidoreductase

Probab=92.15  E-value=0.14  Score=50.70  Aligned_cols=36  Identities=22%  Similarity=0.451  Sum_probs=32.5

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|+.++|.|| ||.|++++..|++.|++|.+++|+.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~   88 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPD   88 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4789999995 88999999999999999999999864

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=92.04  E-value=18  Score=37.97  Aligned_cols=209  Identities=13%  Similarity=0.106  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHhcCCCEEEE----EecC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614           22 VEQVLSNMYQAKAEGADVVEI----RLDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (403)
Q Consensus        22 ~~e~~~~~~~~~~~~~D~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (403)
                      .++.+.-++...+.|.+.||.    ..|.   +...++.+.+..+++.. +.++-.-+|..+--|.....++-...+++.
T Consensus        24 t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~  103 (467)
T PRK14041         24 TEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKK  103 (467)
T ss_pred             HHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHH
Confidence            344444455555679999999    3442   11223456777777653 566666678766666544455555567889


Q ss_pred             HHHcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015614           94 AEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DIT  167 (403)
Q Consensus        94 ~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~~~  167 (403)
                      +++.|++.+-+=....+  +..+.+...++.+..+.+.... ...|  +.+.+.++.+++.+.|||.+-|+=|.-  ++.
T Consensus       104 A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~-t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~  182 (467)
T PRK14041        104 VAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISY-TVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPK  182 (467)
T ss_pred             HHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHH
Confidence            99999999888655543  2222222233344455433332 1124  457799999999999999988887664  578


Q ss_pred             HHHHHHHHhcc-CCCCEEEE--EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhhh
Q 015614          168 EIARIFQLLSH-CQVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (403)
Q Consensus       168 D~~~ll~~~~~-~~~p~i~~--~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~~  231 (403)
                      ++.++.+.+.+ .+.|+-.=  +.--.|..+-+..-..|....-+++.. +.-.||++.+++...++.
T Consensus       183 ~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~  250 (467)
T PRK14041        183 RAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRE  250 (467)
T ss_pred             HHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHh
Confidence            88888777643 35554211  122223333333333344443344332 122479999998877653

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.02  E-value=1.3  Score=43.23  Aligned_cols=123  Identities=18%  Similarity=0.282  Sum_probs=74.7

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .++...|+-|-+|+...+-  ..++.++|. +.+-..+-. +   -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~-KDVDGl~~~-N---~g  128 (288)
T PRK14171         54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS-KDIDGFHPL-N---VG  128 (288)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccccCCcc-c---hh
Confidence            456889999887666653    3566666666 4577999999999753211  111111111 111111110 0   01


Q ss_pred             eEE-E-----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEe
Q 015614          331 KLI-G-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFD  398 (403)
Q Consensus       331 ~l~-G-----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~n  398 (403)
                      ++. |     .-.--.|++.-|+..             +.+++||+++|+|-+.. +|.++.-|.+.|+.|+++.
T Consensus       129 ~l~~g~~~~~~PcTp~av~~lL~~y-------------~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtich  190 (288)
T PRK14171        129 YLHSGISQGFIPCTALGCLAVIKKY-------------EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICH  190 (288)
T ss_pred             hhhcCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence            221 1     112245666666543             25789999999997666 9999999999999999877

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.01  E-value=1.3  Score=43.12  Aligned_cols=124  Identities=16%  Similarity=0.292  Sum_probs=74.4

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ....+++|++.....++.    +++.+.++.+ .++...|+-|-+|....+  -..++.++|. +.+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~-KDVDGl~~~n----~g  128 (284)
T PRK14193         54 HRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA-KDADGLHPTN----LG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-cCccCCChhh----hh
Confidence            356789999887666653    3566666666 456799999999974211  0111111111 1111111100    01


Q ss_pred             eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHH--CCCeEEEEec
Q 015614          331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKS--RGARVVIFDI  399 (403)
Q Consensus       331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~--~g~~i~v~nR  399 (403)
                      +++ |    .-.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+  .++.|+++..
T Consensus       129 ~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs  192 (284)
T PRK14193        129 RLVLNEPAPLPCTPRGIVHLLRRY-------------DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHT  192 (284)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCC
Confidence            111 1    123345666666543             35788999999997766 9999999987  6788988874

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.91  E-value=1  Score=44.29  Aligned_cols=124  Identities=12%  Similarity=0.212  Sum_probs=75.7

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEE-----EE
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTI-----IR  325 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi-----~~  325 (403)
                      ....+++|++..-..++.    +++.+.++.+ .++...|+-|=.|+...+  ...++.+++. +.+-..+..     ..
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n~g~l~~  132 (297)
T PRK14186         54 EKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD-KDADGLHPLNLGRLVK  132 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhhHHHHhC
Confidence            356789999876555542    3577777777 456799999999974222  1122222211 111111110     00


Q ss_pred             eccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          326 RPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       326 ~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      .  +..+  .-.--.|++.-|+..             +.+++||+++|+|.+.. ||.++.-|.+.|+.|+++..
T Consensus       133 ~--~~~~--~PcTp~aii~lL~~~-------------~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs  190 (297)
T PRK14186        133 G--EPGL--RSCTPAGVMRLLRSQ-------------QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHS  190 (297)
T ss_pred             C--CCCC--CCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence            0  1001  122356777766543             35788999999997666 99999999999999988853

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=91.85  E-value=0.18  Score=51.44  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      ++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            45789999999999999999999999 99999865

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=91.74  E-value=2.4  Score=39.94  Aligned_cols=148  Identities=17%  Similarity=0.156  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH-----HHHHHHHHHcC
Q 015614           24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR-----LEALHLAEDLG   98 (403)
Q Consensus        24 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~-----~~ll~~~~~~g   98 (403)
                      ++.+.++++.+.++++|=+.--++.      ..+......+..+-+.++-  ..|..  .-+.+     ..-.+.+++.|
T Consensus        20 ~~~~~~~~a~~~~~~av~v~p~~~~------~~~~~~~~~~~~~~~vi~f--p~g~~--~~~~k~~~~~~~~ve~A~~~G   89 (236)
T PF01791_consen   20 DIKKLCREAIEYGFDAVCVTPGYVK------PAAELLAGSGVKVGLVIGF--PFGTS--TTEPKGYDQIVAEVEEAIRLG   89 (236)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEGGGHH------HHHHHSTTSTSEEEEEEST--TTSSS--THHHHTCEEEHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhCCCEEEECHHHHH------HHHHHhhccccccceEEEe--CCCCC--ccccccccchHHHHHHHHHcC
Confidence            6777788888889999876333222      1222222222233333442  22222  23344     66678999999


Q ss_pred             CcEEEEeccc---cc-------hHHHHHH-hccCCCcEEEEeccCCCCCC-----CHhHHHHHHHHHHHcCCCEEEEEee
Q 015614           99 ADYVDFELKV---AS-------NILGKQY-SSHQSGTRFIVSCNLDCETP-----SEEDLGYLVSRMQATGADIIKLVFS  162 (403)
Q Consensus        99 ~~yvDiEl~~---~~-------~~~~~l~-~~~~~~~kiI~S~H~f~~tp-----~~~~l~~~~~~~~~~gadivKia~~  162 (403)
                      ++-||+=++.   .+       +.+.++. ..++.+.++|+- -......     +.+.+....+-+.++|+|++|.-+.
T Consensus        90 Ad~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg  168 (236)
T PF01791_consen   90 ADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG  168 (236)
T ss_dssp             -SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred             CceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC
Confidence            9999987666   21       1233333 345778899887 3211000     1123566666778899999999877


Q ss_pred             ---cCCHhHHHHHHHHhccCCCC
Q 015614          163 ---VNDITEIARIFQLLSHCQVP  182 (403)
Q Consensus       163 ---~~~~~D~~~ll~~~~~~~~p  182 (403)
                         ..+..|+..+.+.....+.|
T Consensus       169 ~~~~~t~~~~~~~~~~~~~~~~p  191 (236)
T PF01791_consen  169 KPVGATPEDVELMRKAVEAAPVP  191 (236)
T ss_dssp             SSSCSHHHHHHHHHHHHHTHSST
T ss_pred             ccccccHHHHHHHHHHHHhcCCC
Confidence               34566777777777766666

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=91.72  E-value=0.2  Score=53.91  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++.+|+|+|+||.|-.++..|+..|+ +|++++.+
T Consensus       336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            457899999999999999999999999 99999864

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.71  E-value=0.18  Score=53.15  Aligned_cols=36  Identities=36%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+.+|+|+|+|.+|.+++..++.+|++|++++++++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999999999999999999999999998754

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=91.68  E-value=0.19  Score=47.59  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++.+|+|+|.||+|.-++.||++-|+ +|++++-+
T Consensus        28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D   63 (263)
T COG1179          28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD   63 (263)
T ss_pred             HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence            346789999999999999999999999 99988643

>PLN02928 oxidoreductase family protein

Probab=91.67  E-value=0.3  Score=49.01  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+.||++.|+|.|..|++++..|..+|++|+.++|+
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~  191 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRS  191 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence            467999999999999999999999999999999986

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=91.54  E-value=1.8  Score=43.04  Aligned_cols=90  Identities=17%  Similarity=0.170  Sum_probs=63.0

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-C-----C----chHHHHHHhcCCCcEEEEeecCCCCC
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-Q-----P----GKDLEIILTKKPLPVLIVYRPKWAGG   78 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~-----~----~~~l~~l~~~~~~PiI~T~R~~~eGG   78 (403)
                      +.| +.++|.+.+.++...-++.+.+.|+|++||-+-+.... .     .    .+.++.+++..++|+++-++..    
T Consensus        99 ~~p-vi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~----  173 (325)
T cd04739          99 SIP-VIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF----  173 (325)
T ss_pred             CCe-EEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC----
Confidence            345 55889999998887777777777999999999874311 1     0    1344556666789999998842    


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEEEeccc
Q 015614           79 LYEGDEHKRLEALHLAEDLGADYVDFELKV  108 (403)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~  108 (403)
                       +  +  +-.++.+.+.+.|++.|.+--..
T Consensus       174 -~--~--~~~~~a~~l~~~Gadgi~~~nt~  198 (325)
T cd04739         174 -F--S--ALAHMAKQLDAAGADGLVLFNRF  198 (325)
T ss_pred             -c--c--CHHHHHHHHHHcCCCeEEEEcCc
Confidence             1  1  34566677778899999875443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=91.47  E-value=4.8  Score=38.99  Aligned_cols=91  Identities=14%  Similarity=0.173  Sum_probs=55.3

Q ss_pred             CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccc-----------hHHHHHHhccCCCcEEEEecc
Q 015614           63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS-----------NILGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~-----------~~~~~l~~~~~~~~kiI~S~H  131 (403)
                      .+.|+|+.++..        +.+++.+..+.+.+.|+++|+|.+..+.           +...+++...+..+.+.++.-
T Consensus        97 ~~~pvi~si~g~--------~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vK  168 (289)
T cd02810          97 PGQPLIASVGGS--------SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVK  168 (289)
T ss_pred             CCCeEEEEeccC--------CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEE
Confidence            478999999843        4578888888888889999999877542           122223211112212222221


Q ss_pred             CCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015614          132 LDCETPSEEDLGYLVSRMQATGADIIKLVFS  162 (403)
Q Consensus       132 ~f~~tp~~~~l~~~~~~~~~~gadivKia~~  162 (403)
                      - ....+.+++.++.+.+.+.|+|.+.+...
T Consensus       169 l-~~~~~~~~~~~~a~~l~~~Gad~i~~~~~  198 (289)
T cd02810         169 L-SPYFDLEDIVELAKAAERAGADGLTAINT  198 (289)
T ss_pred             e-CCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            1 01113456778888888888888876543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.46  E-value=1.3  Score=43.31  Aligned_cols=124  Identities=13%  Similarity=0.258  Sum_probs=75.2

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .+++..|+-|-+|....+-  ..++.++|. +.+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (284)
T PRK14190         54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE-KDVDGFHPIN----VG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccCHhh----HH
Confidence            456789999987666654    2566777777 4568999999999752211  111112211 1111111100    01


Q ss_pred             eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      ++ .|    .-.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+.|+.|+++..
T Consensus       129 ~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs  190 (284)
T PRK14190        129 RMMLGQDTFLPCTPHGILELLKEY-------------NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS  190 (284)
T ss_pred             HHhcCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC
Confidence            11 01    112345666665543             36789999999997666 99999999999999988853

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=91.45  E-value=0.25  Score=55.66  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+|+|+|+|+|.||.++++.|+..|++|+|+.+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            46899999999999999999999999999999863

>PRK07411 hypothetical protein; Validated

Probab=91.27  E-value=0.23  Score=50.69  Aligned_cols=35  Identities=31%  Similarity=0.497  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      ++..+|+|+|+||.|-.++..|+..|+ +|+|++.+
T Consensus        36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            346789999999999999999999999 99999865

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=91.27  E-value=0.32  Score=51.95  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..|++++|+|+|.+|.++++.|+++|++|+|+.+.
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~  169 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG  169 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            45899999999999999999999999999999864

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=91.24  E-value=0.29  Score=55.59  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+|+++|||+|.||.++++.|++.|.+|+|+.+.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~  571 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFERE  571 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecc
Confidence            45789999999999999999999999999999875

>PRK13243 glyoxylate reductase; Reviewed

Probab=91.23  E-value=0.36  Score=48.19  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+.||++.|+|.|..|++++..|...|++|++++|+.
T Consensus       147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  183 (333)
T PRK13243        147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR  183 (333)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4679999999999999999999999999999999875

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=91.21  E-value=2  Score=42.56  Aligned_cols=91  Identities=25%  Similarity=0.449  Sum_probs=63.0

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC------------CC---chHHHHHHhcCCCcEEEEeec
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF------------QP---GKDLEIILTKKPLPVLIVYRP   73 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~~~PiI~T~R~   73 (403)
                      .+| +.+.|.+.+.+++..-++.+.+.|+|.|||-.-+=.+.            ++   .+.++.+++..++|+.+-+|.
T Consensus        62 ~~p-~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~  140 (319)
T TIGR00737        62 ETP-ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI  140 (319)
T ss_pred             cce-EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence            355 56999999999999988888888999999976542110            11   133445666678999888884


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614           74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (403)
Q Consensus        74 ~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiE  105 (403)
                      -+     +.....-.++.+.+.+.|++++.+-
T Consensus       141 g~-----~~~~~~~~~~a~~l~~~G~d~i~vh  167 (319)
T TIGR00737       141 GW-----DDAHINAVEAARIAEDAGAQAVTLH  167 (319)
T ss_pred             cc-----CCCcchHHHHHHHHHHhCCCEEEEE
Confidence            22     1122234567777788899999874

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=91.20  E-value=12  Score=40.52  Aligned_cols=152  Identities=13%  Similarity=0.098  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhcCCCEEEE----EecC----CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614           22 VEQVLSNMYQAKAEGADVVEI----RLDC----INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (403)
Q Consensus        22 ~~e~~~~~~~~~~~~~D~vEl----RlD~----l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (403)
                      .++.+.-+...-+.|.+.+|.    ..|-    +.+ ++.+.+..+++.. +.|+-.-+|..+==|..+.+++-..+.++
T Consensus        26 ~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e-~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~  104 (593)
T PRK14040         26 LDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGE-DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVE  104 (593)
T ss_pred             HHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHH
Confidence            345554444445679999999    3552    222 4566777777654 57776666754444444556677778899


Q ss_pred             HHHHcCCcEEEEeccccc--hHHHHHHhccCCCcEE--EEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--
Q 015614           93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRF--IVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--  164 (403)
Q Consensus        93 ~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~ki--I~S~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--  164 (403)
                      .+.+.|++.+-|=..+.+  .....+...+..+..+  -++|-.   .|  +.+.+.+..+++.+.|||.+-|+=|.-  
T Consensus       105 ~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~---~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l  181 (593)
T PRK14040        105 RAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT---SPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLL  181 (593)
T ss_pred             HHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee---CCccCHHHHHHHHHHHHHcCCCEEEECCCCCCc
Confidence            999999999888644432  2222232233233332  344422   23  357789999999999999998887664  


Q ss_pred             CHhHHHHHHHHhc
Q 015614          165 DITEIARIFQLLS  177 (403)
Q Consensus       165 ~~~D~~~ll~~~~  177 (403)
                      ++.++.++.+.+.
T Consensus       182 ~P~~~~~lv~~lk  194 (593)
T PRK14040        182 KPYAAYELVSRIK  194 (593)
T ss_pred             CHHHHHHHHHHHH
Confidence            5777777776653

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=91.17  E-value=3.2  Score=42.42  Aligned_cols=133  Identities=17%  Similarity=0.143  Sum_probs=87.6

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHH
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      +.|++++.|-.++.+++++.+++....+.+.+|+=.-++..... +.++.+++. .+.|+.+.+-...        ...+
T Consensus       171 ~~p~L~vALD~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~-~iVk~Lr~~~~~~~I~~DLK~~D--------i~~~  241 (391)
T PRK13307        171 DPPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGL-EVISKIREVRPDAFIVADLKTLD--------TGNL  241 (391)
T ss_pred             ccceEEEecCCCCHHHHHHHHHhcccccceEEEECHHHHHHhCH-HHHHHHHHhCCCCeEEEEecccC--------hhhH
Confidence            35899999999999999988877633346788998887765543 467788776 5788998888641        1222


Q ss_pred             HHHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEE-eccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614           88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIV-SCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~-S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      .  .+.+.+.|++++-+=.....+.+.+.+ ..++.+.++++ ..|.  .||     .+.++.+ ..+.|++-+-
T Consensus       242 v--v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp--~tp-----~e~i~~l-~~~vD~Vllh  306 (391)
T PRK13307        242 E--ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNV--EDP-----VKLLESL-KVKPDVVELH  306 (391)
T ss_pred             H--HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCC--CCH-----HHHHHHh-hCCCCEEEEc
Confidence            1  667889999999887665543333332 34456778877 5552  122     2233333 4577887555

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=91.16  E-value=3.2  Score=40.63  Aligned_cols=39  Identities=10%  Similarity=0.141  Sum_probs=30.9

Q ss_pred             CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC-CcEEEEecccc
Q 015614           63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVA  109 (403)
Q Consensus        63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g-~~yvDiEl~~~  109 (403)
                      .+.|+|+.+...        +.+++.+..+.+.+.| +|+|+|-+..+
T Consensus        90 ~~~p~i~si~g~--------~~~~~~~~a~~~~~aG~~D~iElN~~cP  129 (301)
T PRK07259         90 FDTPIIANVAGS--------TEEEYAEVAEKLSKAPNVDAIELNISCP  129 (301)
T ss_pred             cCCcEEEEeccC--------CHHHHHHHHHHHhccCCcCEEEEECCCC
Confidence            478999999732        4678888888888998 99999976543

>PRK14031 glutamate dehydrogenase; Provisional

Probab=91.15  E-value=0.71  Score=47.82  Aligned_cols=53  Identities=21%  Similarity=0.373  Sum_probs=43.7

Q ss_pred             ccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEe
Q 015614          337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFD  398 (403)
Q Consensus       337 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~n  398 (403)
                      --+.|...+++..+.+.         +.+++|++|+|-|.|-+|..++..|.+.|++|+.++
T Consensus       206 aTg~Gv~~~~~~~~~~~---------g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVS  258 (444)
T PRK14031        206 ATGYGNIYFLMEMLKTK---------GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMS  258 (444)
T ss_pred             ccHHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            34678888888877633         256889999999999999999999999999876643

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=91.14  E-value=6.6  Score=37.81  Aligned_cols=152  Identities=16%  Similarity=0.192  Sum_probs=81.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHh--cCCCcEEEEeecC-CCCCCCCCCHHHHHHHHHHHHHc
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT--KKPLPVLIVYRPK-WAGGLYEGDEHKRLEALHLAEDL   97 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~~~~   97 (403)
                      +.+++..-++++.+.++|.|=+---         .+....+  ..+.|+++++=+. .-|.  .+..+....-.+.+++.
T Consensus        37 ~~~d~~~~~~~a~~~~~~av~v~~~---------~~~~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~ve~A~~~  105 (267)
T PRK07226         37 GLVDIRDTVNKVAEGGADAVLMHKG---------LARHGHRGYGRDVGLIVHLSASTSLSP--DPNDKVLVGTVEEAIKL  105 (267)
T ss_pred             CcCCHHHHHHHHHhcCCCEEEeCHh---------HHhhhccccCCCCcEEEEEcCCCCCCC--CCCcceeeecHHHHHHc
Confidence            4566666677777778888865211         2222222  2467777765521 1110  11114455557789999


Q ss_pred             CCcEEEEeccccc----h---HHHHHHh-ccCCCcEEEEe-ccC---CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015614           98 GADYVDFELKVAS----N---ILGKQYS-SHQSGTRFIVS-CNL---DCETPSEEDLGYLVSRMQATGADIIKLVFSVND  165 (403)
Q Consensus        98 g~~yvDiEl~~~~----~---~~~~l~~-~~~~~~kiI~S-~H~---f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~  165 (403)
                      |++.||+=+....    +   ...++.. .++.+..+|+- |-+   .+..-+.+++....+.+.+.|||++|.-...  
T Consensus       106 Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~--  183 (267)
T PRK07226        106 GADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG--  183 (267)
T ss_pred             CCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC--
Confidence            9999998655422    1   2223331 23355566553 211   1111233455666677888999999997432  


Q ss_pred             HhHHHHHHHHhccCCCCEEEEE
Q 015614          166 ITEIARIFQLLSHCQVPIIAYS  187 (403)
Q Consensus       166 ~~D~~~ll~~~~~~~~p~i~~~  187 (403)
                        |...+-+.......|+.+.+
T Consensus       184 --~~~~l~~~~~~~~ipV~a~G  203 (267)
T PRK07226        184 --DPESFREVVEGCPVPVVIAG  203 (267)
T ss_pred             --CHHHHHHHHHhCCCCEEEEe
Confidence              33223333333467775544

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=91.12  E-value=3.1  Score=39.82  Aligned_cols=152  Identities=16%  Similarity=0.229  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecC-CCCCCCCCCHHHHHHHHHHHHHcC
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPK-WAGGLYEGDEHKRLEALHLAEDLG   98 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~~~~g   98 (403)
                      .+.+++.+-++++.+.++|+|=+---++..      .... ...+.++++++-.. ..|..  ..........+.+++.|
T Consensus        33 ~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~------~~~~-~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~v~~al~~G  103 (258)
T TIGR01949        33 KGLVDIRKTVNEVAEGGADAVLLHKGIVRR------GHRG-YGKDVGLIIHLSASTSLSPD--PNDKRIVTTVEDAIRMG  103 (258)
T ss_pred             CCcCCHHHHHHHHHhcCCCEEEeCcchhhh------cccc-cCCCCcEEEEEcCCCCCCCC--CCcceeeeeHHHHHHCC
Confidence            345666666777777788888663222221      1111 23477877655211 11111  11223445678999999


Q ss_pred             CcEEEEeccccc----hHH---HHHHh-ccCCCcEEEEec-----cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015614           99 ADYVDFELKVAS----NIL---GKQYS-SHQSGTRFIVSC-----NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND  165 (403)
Q Consensus        99 ~~yvDiEl~~~~----~~~---~~l~~-~~~~~~kiI~S~-----H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~  165 (403)
                      ++.||+......    +..   .++.. .++.+..+|+-.     |...  .+.+++.+..+.+.+.|||++|.-+.   
T Consensus       104 a~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~--~~~~~~~~~~~~a~~~GADyikt~~~---  178 (258)
T TIGR01949       104 ADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDD--RDPELVAHAARLGAELGADIVKTPYT---  178 (258)
T ss_pred             CCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCccccc--ccHHHHHHHHHHHHHHCCCEEeccCC---
Confidence            999999776321    222   23332 234566666622     2211  12344545457777899999997532   


Q ss_pred             HhHHHHHHHHhccCCCCEEEE
Q 015614          166 ITEIARIFQLLSHCQVPIIAY  186 (403)
Q Consensus       166 ~~D~~~ll~~~~~~~~p~i~~  186 (403)
                       .+...+-++......|+.++
T Consensus       179 -~~~~~l~~~~~~~~iPVva~  198 (258)
T TIGR01949       179 -GDIDSFRDVVKGCPAPVVVA  198 (258)
T ss_pred             -CCHHHHHHHHHhCCCcEEEe
Confidence             23333333444456777554

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=91.10  E-value=0.29  Score=55.69  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=31.5

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++|+|||+|.||.++|+.|++.|.+|+|+.+.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~  569 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK  569 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4689999999999999999999999999999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PLN02852 ferredoxin-NADP+ reductase

Probab=91.05  E-value=0.38  Score=50.58  Aligned_cols=36  Identities=28%  Similarity=0.139  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHH--CCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKS--RGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~--~g~~i~v~nR~~  401 (403)
                      ..+++++|+|+|.||.++++.|.+  .|++|+|+.|.+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p   61 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP   61 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence            356889999999999999999986  688999999865

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.05  E-value=1.3  Score=43.37  Aligned_cols=117  Identities=17%  Similarity=0.271  Sum_probs=74.1

Q ss_pred             HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHHcccccCCHHHhhccceeEEEEeccCCeEE
Q 015614          259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLI  333 (403)
Q Consensus       259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~  333 (403)
                      ...+++|++.....++.    +++.+.++.+ .++...|+-|-.|+-..    +|+   . +.+.+++.-. + =|| ++
T Consensus        54 k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~----id~---~-~i~~~I~p~K-D-VDG-l~  122 (286)
T PRK14184         54 RACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKG----LDS---Q-RCLELIDPAK-D-VDG-FH  122 (286)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCC----CCH---H-HHHhccCccc-C-ccc-CC
Confidence            46789999987766653    3566777777 45689999999997422    221   1 1112221110 0 011 11


Q ss_pred             EE-------------eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHH----CCCeEE
Q 015614          334 GY-------------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKS----RGARVV  395 (403)
Q Consensus       334 G~-------------NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~----~g~~i~  395 (403)
                      -+             -.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+    .|+.|+
T Consensus       123 ~~N~g~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt  189 (286)
T PRK14184        123 PENMGRLALGLPGFRPCTPAGVMTLLERY-------------GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT  189 (286)
T ss_pred             HhhHHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE
Confidence            11             12345677766553             26788999999997666 9999999988    778888


Q ss_pred             EEec
Q 015614          396 IFDI  399 (403)
Q Consensus       396 v~nR  399 (403)
                      ++..
T Consensus       190 ~~hs  193 (286)
T PRK14184        190 VCHS  193 (286)
T ss_pred             EEeC
Confidence            8764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=91.03  E-value=0.39  Score=54.98  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=31.7

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++|+|||+|.||.++++.|++.|.+|+|+.+.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~  462 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEAL  462 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence            5789999999999999999999999999999875

>TIGR01496 DHPS dihydropteroate synthase

Probab=91.03  E-value=8.8  Score=36.88  Aligned_cols=156  Identities=18%  Similarity=0.286  Sum_probs=85.6

Q ss_pred             CCcccCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCC----CCCCchH---H----HHHHhcCCCcEEE
Q 015614            1 MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN----NFQPGKD---L----EIILTKKPLPVLI   69 (403)
Q Consensus         1 ~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~---l----~~l~~~~~~PiI~   69 (403)
                      ||+.|+++....=  .-...+.++++..+.+..+.|||+|.+--..-.    ..++.++   +    ..+++..+.|+-+
T Consensus         3 mgilN~tpdSF~d--g~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsi   80 (257)
T TIGR01496         3 MGIVNVTPDSFSD--GGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISV   80 (257)
T ss_pred             EEEEeCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            6677776664320  011245678888888878899999999432211    1111222   2    2233334677543


Q ss_pred             EeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCH---------
Q 015614           70 VYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE---------  139 (403)
Q Consensus        70 T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~---------  139 (403)
                        -+            .+-+.++++++.|+++| |+.....++..+.+   ++.+..+|+ .|+ .+.|..         
T Consensus        81 --DT------------~~~~vi~~al~~G~~iINsis~~~~~~~~~l~---~~~~~~vV~-m~~-~g~p~~~~~~~~~~~  141 (257)
T TIGR01496        81 --DT------------YRAEVARAALEAGADIINDVSGGQDPAMLEVA---AEYGVPLVL-MHM-RGTPRTMQENPHYED  141 (257)
T ss_pred             --eC------------CCHHHHHHHHHcCCCEEEECCCCCCchhHHHH---HHcCCcEEE-EeC-CCCCcccccCCCccc
Confidence              32            23357788888898875 34333233333322   235678888 454 234422         


Q ss_pred             ------hHHHHHHHHHHHcCCCEEEEEeec-----CCHhHHHHHHHHhc
Q 015614          140 ------EDLGYLVSRMQATGADIIKLVFSV-----NDITEIARIFQLLS  177 (403)
Q Consensus       140 ------~~l~~~~~~~~~~gadivKia~~~-----~~~~D~~~ll~~~~  177 (403)
                            +.+.+.++++.+.|-+.-++..=|     .+.+++..+++...
T Consensus       142 ~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~  190 (257)
T TIGR01496       142 VVEEVLRFLEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLE  190 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHH
Confidence                  225566777888887544554433     45667766666644

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>PRK12831 putative oxidoreductase; Provisional

Probab=90.91  E-value=0.38  Score=50.23  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+++++|||+|-+|.++++.|+++|.+|+|+.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~  172 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL  172 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            45789999999999999999999999999999874

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=90.89  E-value=10  Score=37.68  Aligned_cols=95  Identities=9%  Similarity=0.107  Sum_probs=67.8

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC------------CC---chHHHHHHhcCCCcEEEEeecC
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF------------QP---GKDLEIILTKKPLPVLIVYRPK   74 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~~~PiI~T~R~~   74 (403)
                      .| +.+.|.+.+.+++..-++.+...|+|.|||-+-+=...            ++   .+.++.+++..+.|+.+-+|.-
T Consensus        55 ~p-~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g  133 (318)
T TIGR00742        55 SP-VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIG  133 (318)
T ss_pred             Cc-EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            45 46999999999999888887778999999988773211            11   1344455566689999999964


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccc
Q 015614           75 WAGGLYEGDEHKRLEALHLAEDLGADYVDFELKV  108 (403)
Q Consensus        75 ~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~  108 (403)
                      ++-.   .+.+...++.+.+.+.|++.|+|--.+
T Consensus       134 ~~~~---~~~~~~~~~~~~l~~~G~~~itvHgRt  164 (318)
T TIGR00742       134 IDPL---DSYEFLCDFVEIVSGKGCQNFIVHARK  164 (318)
T ss_pred             CCCc---chHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            3211   122456678888889999999988665

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=90.88  E-value=5.3  Score=36.83  Aligned_cols=110  Identities=15%  Similarity=0.230  Sum_probs=66.0

Q ss_pred             eeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEe---cCCCCCC-CchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHH
Q 015614           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL---DCINNFQ-PGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHK   86 (403)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl---D~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~   86 (403)
                      ..|.++|...|......+++.+.+.|+|+|++|+   .+.++.. ..+.++.+++..+.|+-+.+-..        +.+.
T Consensus         4 ~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--------d~~~   75 (220)
T PRK05581          4 VLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--------NPDR   75 (220)
T ss_pred             cEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--------CHHH
Confidence            3578899999988888889999999999999985   2222211 13456666654444543444432        2334


Q ss_pred             HHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEecc
Q 015614           87 RLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        87 ~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H  131 (403)
                      +.   +.+.+.|+++|=+=....+.....+...++.+.+++++.+
T Consensus        76 ~i---~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~  117 (220)
T PRK05581         76 YV---PDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLN  117 (220)
T ss_pred             HH---HHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEEC
Confidence            44   4445788888555443333222222223345677888775

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=90.88  E-value=14  Score=35.58  Aligned_cols=191  Identities=16%  Similarity=0.113  Sum_probs=108.6

Q ss_pred             HHHHHhcCCCEEEEEecCCCCC--------CCchHHHHHHhcC--CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614           29 MYQAKAEGADVVEIRLDCINNF--------QPGKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~l~~~--------~~~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (403)
                      ++..-+.|+|.||+=.=.-.+.        .+.+.+..+++..  +.++..-+|....          -.+.+..+.+.|
T Consensus        26 a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~l~~a~~~g   95 (266)
T cd07944          26 YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND----------DIDLLEPASGSV   95 (266)
T ss_pred             HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC----------CHHHHHHHhcCC
Confidence            3333457999999964222111        1235566666543  6788888886431          123566778888


Q ss_pred             CcEEEEecccc--chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHhHHHHHHH
Q 015614           99 ADYVDFELKVA--SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DITEIARIFQ  174 (403)
Q Consensus        99 ~~yvDiEl~~~--~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~~~D~~~ll~  174 (403)
                      ++.|-+-....  ++..+.+...+..+.++.++.-+...+ +.+.+.+.++++.+.|+|.+-++=+.-  ++.++.++.+
T Consensus        96 v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~  174 (266)
T cd07944          96 VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGY-SDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIIS  174 (266)
T ss_pred             cCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCC-CHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHH
Confidence            99877764432  222222223344566777776553333 367899999999999999988886553  5888888888


Q ss_pred             HhccC-C--CCEEEEEcCccch--hhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          175 LLSHC-Q--VPIIAYSVGERGL--VSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       175 ~~~~~-~--~p~i~~~MG~~G~--~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      .+.+. +  .|+-.=+=-..|.  ..-+..-..|....-+++.+ +-..|+++++++...++
T Consensus       175 ~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~  236 (266)
T cd07944         175 LLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLN  236 (266)
T ss_pred             HHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHH
Confidence            76543 3  4442211111121  11111122233333344332 23578888888776554

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=90.88  E-value=6.5  Score=37.62  Aligned_cols=139  Identities=19%  Similarity=0.210  Sum_probs=82.3

Q ss_pred             CeeEEEec--ccCC-----HHHHHHHHHHHHhcCCCEEEEEecCCCCCCCch---HHHHHH---hcCCCcEEEEeecCCC
Q 015614           10 TTMICAPL--MAQS-----VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIIL---TKKPLPVLIVYRPKWA   76 (403)
Q Consensus        10 ~~~icv~l--~~~~-----~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~---~~~~~PiI~T~R~~~e   76 (403)
                      .+.+|+++  .++.     .+.....+++++..|+|.|-+|...... ...+   .+..++   +..+.|+++-.-  ..
T Consensus        70 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~-~~~~~~~~~~~i~~~~~~~g~~liv~~~--~~  146 (258)
T TIGR01949        70 DVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSD-TEWEQIRDLGMIAEICDDWGVPLLAMMY--PR  146 (258)
T ss_pred             CCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEe--cc
Confidence            34467777  3332     1235556788889999999999875432 1122   233333   235789887322  33


Q ss_pred             CCCCC-CCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015614           77 GGLYE-GDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGAD  155 (403)
Q Consensus        77 GG~~~-~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gad  155 (403)
                      |.... .+.+...+..+.+.+.|+|||=+......+.++++...  ....|+.+=-  -++.+.++..+.++++.+.|++
T Consensus       147 Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~--~~iPVva~GG--i~~~~~~~~~~~i~~~~~aGa~  222 (258)
T TIGR01949       147 GPHIDDRDPELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKG--CPAPVVVAGG--PKTNSDREFLQMIKDAMEAGAA  222 (258)
T ss_pred             CcccccccHHHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHh--CCCcEEEecC--CCCCCHHHHHHHHHHHHHcCCc
Confidence            43222 23344444457778899999998765434555555532  2345554421  1223467788889988899998

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=90.88  E-value=0.37  Score=50.28  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++++|+|+|.+|.++++.|.+.|.+|+|+.+..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~  176 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD  176 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            357899999999999999999999999999998753

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.83  E-value=0.96  Score=44.01  Aligned_cols=125  Identities=18%  Similarity=0.270  Sum_probs=76.0

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ....+++|++.....++.    +++.+.++.+ .++...|+-|-.|.-..+-  ..++.++|. +.+-..+..-    -|
T Consensus        48 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~-KDVDGl~~~n----~g  122 (279)
T PRK14178         48 HRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE-KDVDGFHPLN----LG  122 (279)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cCcccCChhh----HH
Confidence            346789999987766654    3566777777 5678999999999742211  111111110 1111111000    01


Q ss_pred             eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcch-hHHHHHHHHHHHCCCeEEEEecC
Q 015614          331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaG-Gaarai~~al~~~g~~i~v~nR~  400 (403)
                      +++ |    .-.--.|++.-|+..             +.+++|++++|+|-+ -.+|.++.-|...|+.|+++.++
T Consensus       123 ~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~  185 (279)
T PRK14178        123 RLVSGLPGFAPCTPNGIMTLLHEY-------------KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK  185 (279)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC
Confidence            111 1    112345666666543             357899999999988 55999999999999998888764

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.82  E-value=0.34  Score=52.65  Aligned_cols=35  Identities=29%  Similarity=0.273  Sum_probs=32.4

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++|+|+|.+|.++++.|++.|.+|+|+.|..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            58999999999999999999999999999998764

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.68  E-value=1.1  Score=43.88  Aligned_cols=124  Identities=18%  Similarity=0.269  Sum_probs=76.5

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .++...|+-|-.|.-..+-  ..++.++|. +.+-..+..-    -|
T Consensus        48 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~-KDVDGl~p~n----~g  122 (287)
T PRK14181         48 VKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD-KDVDGLHPVN----MG  122 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc-cCcccCChhh----HH
Confidence            456789999887766653    3577777777 4578999999999752221  112222221 1111111110    01


Q ss_pred             eEE-EE-----eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHC----CCeEEEEec
Q 015614          331 KLI-GY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSR----GARVVIFDI  399 (403)
Q Consensus       331 ~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~----g~~i~v~nR  399 (403)
                      +++ |.     -.--.|++.-|+..             +.+++||+++|+|-+.. +|.++.-|.+.    ++.|+++..
T Consensus       123 ~l~~g~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs  189 (287)
T PRK14181        123 KLLLGETDGFIPCTPAGIIELLKYY-------------EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHS  189 (287)
T ss_pred             HHhcCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCC
Confidence            111 11     12345677766543             35789999999997666 99999999888    678998874

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.62  E-value=1.1  Score=43.99  Aligned_cols=120  Identities=18%  Similarity=0.263  Sum_probs=74.3

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHHcccccCCHHHhhccceeEEEEeccC---
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSD---  329 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~---  329 (403)
                      ...++++|++.....++.    +++.+.++.+ .++...|+-|-.|...    ++|   +.. .+.+++--. + =|   
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~----~id---~~~-i~~~I~p~K-D-VDGl~  122 (295)
T PRK14174         53 AKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK----QID---EFA-VTLAIDPAK-D-VDGFH  122 (295)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCC---HHH-HHhcCCccc-c-ccccC
Confidence            356889999988777764    3577777777 4577999999999752    222   111 111111110 0 01   


Q ss_pred             ----CeE-EEE------eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHH----CCCe
Q 015614          330 ----GKL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKS----RGAR  393 (403)
Q Consensus       330 ----g~l-~G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~----~g~~  393 (403)
                          |++ .|+      -.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+    .|+.
T Consensus       123 ~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~at  189 (295)
T PRK14174        123 PENLGRLVMGHLDKCFVSCTPYGILELLGRY-------------NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCT  189 (295)
T ss_pred             hhhHHHHhcCCCCCCcCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCE
Confidence                111 121      12345666655443             25788999999997766 9999998887    5778


Q ss_pred             EEEEecC
Q 015614          394 VVIFDID  400 (403)
Q Consensus       394 i~v~nR~  400 (403)
                      |+++..+
T Consensus       190 Vt~~hs~  196 (295)
T PRK14174        190 VTICHSA  196 (295)
T ss_pred             EEEEeCC
Confidence            8877643

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=90.60  E-value=19  Score=39.61  Aligned_cols=107  Identities=20%  Similarity=0.232  Sum_probs=64.1

Q ss_pred             HHHHHhcCCCEEEEEecC--CCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           29 MYQAKAEGADVVEIRLDC--INNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~--l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      +..+...||++|=+=-|-  |...  .+.|..+|+..++|++--     +   |=.+  .| ++ ..+...|+|.|=+=.
T Consensus        76 a~~y~~~GA~aiSVlTe~~~F~Gs--~~~l~~vr~~v~~PvLrK-----D---FIid--~~-QI-~ea~~~GADavLLI~  141 (695)
T PRK13802         76 AREYEQGGASAISVLTEGRRFLGS--LDDFDKVRAAVHIPVLRK-----D---FIVT--DY-QI-WEARAHGADLVLLIV  141 (695)
T ss_pred             HHHHHHcCCcEEEEecCcCcCCCC--HHHHHHHHHhCCCCEEec-----c---ccCC--HH-HH-HHHHHcCCCEeehhH
Confidence            344556799999886652  3332  357888888889998821     1   2122  22 22 344456788777665


Q ss_pred             cccc-hHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          107 KVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       107 ~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      .... +.+++++ ..+.-+...++..|+      .+    -++++.+.|++|+=|
T Consensus       142 ~~L~~~~l~~l~~~a~~lGme~LvEvh~------~~----el~~a~~~ga~iiGI  186 (695)
T PRK13802        142 AALDDAQLKHLLDLAHELGMTVLVETHT------RE----EIERAIAAGAKVIGI  186 (695)
T ss_pred             hhcCHHHHHHHHHHHHHcCCeEEEEeCC------HH----HHHHHHhCCCCEEEE
Confidence            5443 3455555 344567888888886      22    344555677776543

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=90.54  E-value=0.3  Score=52.08  Aligned_cols=37  Identities=22%  Similarity=0.069  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++.++|.|| ||.|++++..|.+.|++|+++.|+.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e  115 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ  115 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            35789999996 99999999999999999999999754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=90.52  E-value=0.43  Score=49.55  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+++++|+|+|-+|.++++.|.+.|.+|+|+.+.
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~  165 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEAL  165 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            45789999999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=90.50  E-value=0.41  Score=47.75  Aligned_cols=37  Identities=24%  Similarity=0.282  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+.|+++.|+|.|..|++++..|...|++|+.++|+.
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~  179 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP  179 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            4678999999999999999999999999999999875

>PLN02334 ribulose-phosphate 3-epimerase

Probab=90.49  E-value=15  Score=34.36  Aligned_cols=112  Identities=11%  Similarity=0.076  Sum_probs=68.9

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CCc---hHHHHHHhcCCCcEEEEeecCCCCCCCCCCH
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDE   84 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~   84 (403)
                      +.-.|..++...+...+..+++.+...|+|.+-+|+--..-. +..   +.+..+++.++.|+-+++-..        +.
T Consensus         6 ~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~--------~p   77 (229)
T PLN02334          6 NDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVT--------NP   77 (229)
T ss_pred             CCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccC--------CH
Confidence            344577777777777788888888888999999976543211 111   466777777777755554432        33


Q ss_pred             HHHHHHHHHHHHcCCcEE--EEeccccchHHHHHHhccCCCcEEEEecc
Q 015614           85 HKRLEALHLAEDLGADYV--DFELKVASNILGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        85 ~~~~~ll~~~~~~g~~yv--DiEl~~~~~~~~~l~~~~~~~~kiI~S~H  131 (403)
                      +.|++   .+.+.|+++|  =+|....+...+.+...++.+.++-+|.|
T Consensus        78 ~d~~~---~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~  123 (229)
T PLN02334         78 EDYVP---DFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLN  123 (229)
T ss_pred             HHHHH---HHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEEC
Confidence            45554   4577899999  55520112122222223345778888887

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=90.49  E-value=2.7  Score=41.63  Aligned_cols=88  Identities=18%  Similarity=0.248  Sum_probs=62.4

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC------------CC---chHHHHHHhcC--CCcEEEEeecCC
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF------------QP---GKDLEIILTKK--PLPVLIVYRPKW   75 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~--~~PiI~T~R~~~   75 (403)
                      +.+.|.+.+.+++...++.+.+.|+|.|||-+-+-...            ++   .+-+..+++..  ++|+-+-+|.  
T Consensus        65 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~--  142 (312)
T PRK10550         65 VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL--  142 (312)
T ss_pred             EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC--
Confidence            56999999999999888888888999999998884311            11   12334445544  3787777775  


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           76 AGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        76 eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                        | ++ +.++..++.+.+.+.|++++.|--
T Consensus       143 --g-~~-~~~~~~~~a~~l~~~Gvd~i~Vh~  169 (312)
T PRK10550        143 --G-WD-SGERKFEIADAVQQAGATELVVHG  169 (312)
T ss_pred             --C-CC-CchHHHHHHHHHHhcCCCEEEECC
Confidence              2 22 223467888888899999998753

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=90.41  E-value=21  Score=35.74  Aligned_cols=199  Identities=15%  Similarity=0.207  Sum_probs=106.3

Q ss_pred             cccCCHHHHHHHHHHHHhcCCCEEEEE---------ecC-CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHH
Q 015614           17 LMAQSVEQVLSNMYQAKAEGADVVEIR---------LDC-INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEH   85 (403)
Q Consensus        17 l~~~~~~e~~~~~~~~~~~~~D~vElR---------lD~-l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~   85 (403)
                      ++..+..++...+   .+.|+|.||+-         +++ +...++.+.+..+++.. +..+..-+++    |..  .  
T Consensus        21 f~~~~~~~ia~~L---d~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~p----g~~--~--   89 (333)
T TIGR03217        21 FTIEQVRAIAAAL---DEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLP----GIG--T--   89 (333)
T ss_pred             CCHHHHHHHHHHH---HHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEecc----Ccc--C--
Confidence            3334444444444   45699999993         332 33333445666665443 3333333332    111  1  


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccccc-hHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614           86 KRLEALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus        86 ~~~~ll~~~~~~g~~yvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~  163 (403)
                        .+-++.+.+.|++.|-|=....+ +...+.+ ..+..+..+.++.-+-... +.+++.++.+++.++|+|.+=++=+.
T Consensus        90 --~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~~~~~~Ga~~i~i~DT~  166 (333)
T TIGR03217        90 --VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMT-PPEKLAEQAKLMESYGADCVYIVDSA  166 (333)
T ss_pred             --HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHHHHHhcCCCEEEEccCC
Confidence              23468888999999887554432 1222222 3344556665555432122 35789999999999999998887665


Q ss_pred             C--CHhHHHHHHHHhccC-C--CCEEEE-EcCcc--chhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          164 N--DITEIARIFQLLSHC-Q--VPIIAY-SVGER--GLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       164 ~--~~~D~~~ll~~~~~~-~--~p~i~~-~MG~~--G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      -  +++|+.++.+.+.+. +  .|+ .+ +=-..  +...-+..-.-|....=+++.. +...|+.+++++...++
T Consensus       167 G~~~P~~v~~~v~~l~~~l~~~i~i-g~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~  241 (333)
T TIGR03217       167 GAMLPDDVRDRVRALKAVLKPETQV-GFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLD  241 (333)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCceE-EEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccCccHHHHHHHHH
Confidence            4  588998888876543 2  333 22 11111  1111111111233332233322 24578888877765554

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=90.38  E-value=16  Score=34.57  Aligned_cols=84  Identities=20%  Similarity=0.199  Sum_probs=48.0

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc----------------hHHHHHHhcCCCcEEEEeecCCC
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG----------------KDLEIILTKKPLPVLIVYRPKWA   76 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----------------~~l~~l~~~~~~PiI~T~R~~~e   76 (403)
                      .-++.-.++.++...-++...+. +|++||-+-+-....+.                +.++.+|+..++|+++-..-+. 
T Consensus         8 ~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~-   85 (244)
T PRK13125          8 VYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED-   85 (244)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch-
Confidence            34566788999888877665455 99999988544432111                2445566566888764322111 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           77 GGLYEGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                         +..+.+   ++++.+.+.|++.|=+
T Consensus        86 ---~~~~~~---~~i~~~~~~Gadgvii  107 (244)
T PRK13125         86 ---YVDSLD---NFLNMARDVGADGVLF  107 (244)
T ss_pred             ---hhhCHH---HHHHHHHHcCCCEEEE
Confidence               011222   3445556666666544

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=90.33  E-value=1.1  Score=43.06  Aligned_cols=52  Identities=25%  Similarity=0.382  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEe
Q 015614          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFD  398 (403)
Q Consensus       338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~n  398 (403)
                      -+.|...+++..+...         +..++|++++|-|-|.+++.++..|.++|++|. |.+
T Consensus        17 Tg~Gv~~~~~~~~~~~---------~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          17 TGYGLVYFVEEMLKDR---------NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             hHHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            4678888888876632         256789999999999999999999999999765 655

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK06701 short chain dehydrogenase; Provisional

Probab=90.33  E-value=0.48  Score=45.93  Aligned_cols=37  Identities=32%  Similarity=0.526  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            456899999995 7889999999999999999998864

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=90.32  E-value=15  Score=33.96  Aligned_cols=111  Identities=23%  Similarity=0.213  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           25 VLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        25 ~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                      ....++.+...|||++=+--|-.......+.+..+++..++|+++-      |+.  .+++    .++.+.+.|++.|=+
T Consensus        33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~------~~i--~~~~----~v~~~~~~Gad~v~l  100 (217)
T cd00331          33 PVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRK------DFI--IDPY----QIYEARAAGADAVLL  100 (217)
T ss_pred             HHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEEC------Cee--cCHH----HHHHHHHcCCCEEEE
Confidence            3444455566799999432221111112356777777779999951      221  1221    367788899998865


Q ss_pred             eccccc-hHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614          105 ELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus       105 El~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      -....+ +..+++. ..+.-+..+++..|+      +++    ++++.+.|+|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~------~~e----~~~~~~~g~~~i  145 (217)
T cd00331         101 IVAALDDEQLKELYELARELGMEVLVEVHD------EEE----LERALALGAKII  145 (217)
T ss_pred             eeccCCHHHHHHHHHHHHHcCCeEEEEECC------HHH----HHHHHHcCCCEE
Confidence            433222 3333443 223357777888874      444    455566788887

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=90.26  E-value=0.42  Score=49.60  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++++|+|+|.+|.++++.|.+.|.+|+|+.+..
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~  173 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD  173 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            457899999999999999999999999999998763

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=90.17  E-value=5.6  Score=38.32  Aligned_cols=125  Identities=18%  Similarity=0.228  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCC--CchHHHHHHh---cCCCcEEEEeecCCCCCCCC--CCHHHHHHHHHHHH
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQ--PGKDLEIILT---KKPLPVLIVYRPKWAGGLYE--GDEHKRLEALHLAE   95 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~--~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~   95 (403)
                      +....+++++++.|+|.+-+|+..-...+  ..+.+.++++   ..++|+++-.+.  .|....  .++++.....+.+.
T Consensus        93 ~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~--~g~~~e~~~~~~~i~~a~~~a~  170 (267)
T PRK07226         93 KVLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYP--RGPGIKNEYDPEVVAHAARVAA  170 (267)
T ss_pred             ceeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEec--CCCccCCCccHHHHHHHHHHHH
Confidence            45566678888999999999988653221  1123334443   358898885442  232221  23455555567888


Q ss_pred             HcCCcEEEEeccccchHHHHHHhccCCCcEEEEe--ccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015614           96 DLGADYVDFELKVASNILGKQYSSHQSGTRFIVS--CNLDCETPSEEDLGYLVSRMQATGAD  155 (403)
Q Consensus        96 ~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S--~H~f~~tp~~~~l~~~~~~~~~~gad  155 (403)
                      +.|+|||=..+.-..+.++++...  ....|++|  -+    .-+.++..+.+.++.+.||+
T Consensus       171 e~GAD~vKt~~~~~~~~l~~~~~~--~~ipV~a~GGi~----~~~~~~~l~~v~~~~~aGA~  226 (267)
T PRK07226        171 ELGADIVKTNYTGDPESFREVVEG--CPVPVVIAGGPK----TDTDREFLEMVRDAMEAGAA  226 (267)
T ss_pred             HHCCCEEeeCCCCCHHHHHHHHHh--CCCCEEEEeCCC----CCCHHHHHHHHHHHHHcCCc
Confidence            999999977644323445555422  23445444  22    11356788888888888887

>PRK14982 acyl-ACP reductase; Provisional

Probab=90.16  E-value=0.36  Score=48.33  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=32.8

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHH-CCC-eEEEEecCCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKS-RGA-RVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~-~g~-~i~v~nR~~~  402 (403)
                      ..+++++++|+|| |..|+.++..|.. .|+ +|+++||+.+
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~  192 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE  192 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH
Confidence            3577899999999 6779999999975 477 8999999854

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=90.10  E-value=5.2  Score=38.62  Aligned_cols=105  Identities=15%  Similarity=0.269  Sum_probs=70.5

Q ss_pred             EeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEecccc-------------chHHHHHHhccCCCcEEEEeccCC
Q 015614           70 VYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVA-------------SNILGKQYSSHQSGTRFIVSCNLD  133 (403)
Q Consensus        70 T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~-------------~~~~~~l~~~~~~~~kiI~S~H~f  133 (403)
                      |+|   +||+   +..+.+++.++.+.+-+.|+++|++=.-..             .+.++++.....+++++.+-.+.-
T Consensus         5 TLR---DG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (266)
T cd07944           5 TLR---DGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG   81 (266)
T ss_pred             Ccc---cCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence            666   5665   345789999999999999999977743221             234455543322366776654431


Q ss_pred             CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCE
Q 015614          134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPI  183 (403)
Q Consensus       134 ~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~  183 (403)
                      .      ...+.++.+.+.|.|++++++..++.+......+........+
T Consensus        82 ~------~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v  125 (266)
T cd07944          82 N------DDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEV  125 (266)
T ss_pred             C------CCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeE
Confidence            1      1233566677889999999999888888888888776555443

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=90.06  E-value=0.46  Score=51.78  Aligned_cols=35  Identities=34%  Similarity=0.536  Sum_probs=32.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++|+|+|.+|.++++.|++.|.+|+|+.++.
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~  226 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE  226 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            57899999999999999999999999999998764

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.04  E-value=0.38  Score=47.65  Aligned_cols=39  Identities=31%  Similarity=0.351  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+..++.++|-|+ .|.+++++.+|+..|++|++.+|+.+
T Consensus        31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~   70 (314)
T KOG1208|consen   31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEE   70 (314)
T ss_pred             ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHH
Confidence            4567899999995 99999999999999999999999864

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=89.96  E-value=1.2  Score=42.02  Aligned_cols=52  Identities=31%  Similarity=0.352  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEec
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI  399 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR  399 (403)
                      +.|+..+++..+...         ...+.+++++|.|-|.+++.++..|.+.|++|+ |.+.
T Consensus        11 g~Gv~~~~~~~~~~~---------~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          11 GRGVAYATREALKKL---------GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             hHHHHHHHHHHHHhc---------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            568888888876632         245678999999999999999999999999765 6654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=89.82  E-value=2  Score=42.93  Aligned_cols=118  Identities=14%  Similarity=0.242  Sum_probs=73.8

Q ss_pred             HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHHcccccCCHHHhhccceeEEEEeccCC---
Q 015614          259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG---  330 (403)
Q Consensus       259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g---  330 (403)
                      ...+++|++..-..++.    +++.+.++.+ .++...|+-|-.|...    ++|+   . +.+.+++--. + =||   
T Consensus       109 K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~----hid~---~-~i~~~I~p~K-D-VDGl~p  178 (345)
T PLN02897        109 KACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQ----HLDE---S-KILNMVRLEK-D-VDGFHP  178 (345)
T ss_pred             HHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCccc-C-ccCCCH
Confidence            46788999877555553    2566677777 4678999999999752    2221   1 1111121110 0 011   


Q ss_pred             ----eE-EE------EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEe
Q 015614          331 ----KL-IG------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFD  398 (403)
Q Consensus       331 ----~l-~G------~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~n  398 (403)
                          ++ .|      .-.--.|++.-|++.             +.+++||+++|+|-+.. ||.++.-|.+.|+.|+++.
T Consensus       179 ~N~G~L~~~~~~~~~~PCTp~avi~LL~~~-------------~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicH  245 (345)
T PLN02897        179 LNVGNLAMRGREPLFVSCTPKGCVELLIRS-------------GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVH  245 (345)
T ss_pred             HHHHHHhcCCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEc
Confidence                12 11      112245666666543             35789999999997665 9999999999999888876


Q ss_pred             c
Q 015614          399 I  399 (403)
Q Consensus       399 R  399 (403)
                      .
T Consensus       246 s  246 (345)
T PLN02897        246 A  246 (345)
T ss_pred             C
Confidence            4

>PRK07985 oxidoreductase; Provisional

Probab=89.79  E-value=0.52  Score=45.76  Aligned_cols=35  Identities=34%  Similarity=0.467  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      +++|+++|.|+ ||.|++++..|.+.|++|++..|+
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~   82 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP   82 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence            56789999995 889999999999999998887764

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=89.79  E-value=14  Score=34.51  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=71.5

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCC-Cc-EEEEeecCCCCCCCCCCHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKP-LP-VLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~-~P-iI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      .++..+...+.++....++...+.|..++|+.++-   ....+.++.+++..+ .| +++-.=|-     .  +.+    
T Consensus        14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~---~~a~~~i~~l~~~~~~~p~~~vGaGTV-----~--~~~----   79 (213)
T PRK06552         14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTN---PFASEVIKELVELYKDDPEVLIGAGTV-----L--DAV----   79 (213)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC---ccHHHHHHHHHHHcCCCCCeEEeeeeC-----C--CHH----
Confidence            45667889999999999999899999999999872   112346777766543 23 55432211     1  111    


Q ss_pred             HHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           90 ALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        90 ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      -++.+++.|++|+==- .+.++..+.   .+..+.-+|--.|    ||  +|+    .++.+.|+|++|+
T Consensus        80 ~~~~a~~aGA~FivsP-~~~~~v~~~---~~~~~i~~iPG~~----T~--~E~----~~A~~~Gad~vkl  135 (213)
T PRK06552         80 TARLAILAGAQFIVSP-SFNRETAKI---CNLYQIPYLPGCM----TV--TEI----VTALEAGSEIVKL  135 (213)
T ss_pred             HHHHHHHcCCCEEECC-CCCHHHHHH---HHHcCCCEECCcC----CH--HHH----HHHHHcCCCEEEE
Confidence            2357788899886411 112222221   2234554554444    33  344    3344689999997

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=89.78  E-value=13  Score=35.18  Aligned_cols=132  Identities=18%  Similarity=0.232  Sum_probs=77.7

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----C--------CC---chHHHHHHhcCCCcEEEEeecCCC
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN----F--------QP---GKDLEIILTKKPLPVLIVYRPKWA   76 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~--------~~---~~~l~~l~~~~~~PiI~T~R~~~e   76 (403)
                      .+.+.|.+.+.+++..-++.... .+|.|||=+-|=..    .        ++   .+.++.+++ .++|+.+-+|..+ 
T Consensus        74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~-  150 (233)
T cd02911          74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGV-  150 (233)
T ss_pred             eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCc-
Confidence            45699999999999887777644 57999997776321    0        12   123344444 5889888888642 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCC
Q 015614           77 GGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGA  154 (403)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~ga  154 (403)
                          +   ++..++.+.+.+.|++++.+.-....  .....+...+ .+..||++==-    -+.++..+.+    ..||
T Consensus       151 ----~---~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI----~s~eda~~~l----~~Ga  214 (233)
T cd02911         151 ----D---VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSV----TTIESAKEMF----SYGA  214 (233)
T ss_pred             ----C---cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCc----CCHHHHHHHH----HcCC
Confidence                2   34566777888899999988654322  0112222221 34555654211    1233333333    3577


Q ss_pred             CEEEEEee
Q 015614          155 DIIKLVFS  162 (403)
Q Consensus       155 divKia~~  162 (403)
                      |.|=+...
T Consensus       215 D~VmiGR~  222 (233)
T cd02911         215 DMVSVARA  222 (233)
T ss_pred             CEEEEcCC
Confidence            77766555

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=89.77  E-value=1.7  Score=42.76  Aligned_cols=123  Identities=17%  Similarity=0.266  Sum_probs=73.7

Q ss_pred             HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCCe
Q 015614          259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDGK  331 (403)
Q Consensus       259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g~  331 (403)
                      ...+++|++..-..++.    +++.+.++.+ .+++..|+-|-.|+-..+-  ..++.++|. +.+-..+-.-    -|+
T Consensus        62 k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~-KDVDGl~~~n----~g~  136 (299)
T PLN02516         62 KACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE-KDVDGFHPLN----IGK  136 (299)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc-cccCccCHhh----Hhh
Confidence            46789999876555542    3577777777 4678999999999642111  111111110 1111111000    012


Q ss_pred             EE-E------EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          332 LI-G------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       332 l~-G------~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      +. |      .-.--.|++.-|+..             +.++.||+++|+|-+.. +|.++.-|.+.|+.|+++..
T Consensus       137 l~~~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs  199 (299)
T PLN02516        137 LAMKGREPLFLPCTPKGCLELLSRS-------------GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHS  199 (299)
T ss_pred             HhcCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence            21 1      112235666665543             36789999999997666 99999999999999998864

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=89.73  E-value=13  Score=34.96  Aligned_cols=192  Identities=16%  Similarity=0.148  Sum_probs=99.8

Q ss_pred             cCCHHHHHHHHHHHHhcCCC---EEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHH
Q 015614           19 AQSVEQVLSNMYQAKAEGAD---VVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE   95 (403)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~~D---~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~   95 (403)
                      ..+..++.+.++   ..|+|   ++.+--|........+.+..+++..++|+++.      ||....  +.-.    .++
T Consensus        26 ~~d~~~~a~~~~---~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~------GGI~s~--~d~~----~~l   90 (243)
T cd04731          26 AGDPVELAKRYN---EQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVG------GGIRSL--EDAR----RLL   90 (243)
T ss_pred             CCCHHHHHHHHH---HCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEe------CCCCCH--HHHH----HHH
Confidence            336666665554   46888   44443332111112345677777788999965      776533  2222    223


Q ss_pred             HcCCcEEEEecccc--chHHHHHHhccCCCcEEEEeccCCCC-------------CCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614           96 DLGADYVDFELKVA--SNILGKQYSSHQSGTRFIVSCNLDCE-------------TPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        96 ~~g~~yvDiEl~~~--~~~~~~l~~~~~~~~kiI~S~H~f~~-------------tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      ..|++.|.+-....  .+++.++...- +.-++++|.-...+             ..+..+..+..+++.+.|+|.+=+-
T Consensus        91 ~~G~~~v~ig~~~~~~p~~~~~i~~~~-~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~  169 (243)
T cd04731          91 RAGADKVSINSAAVENPELIREIAKRF-GSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLT  169 (243)
T ss_pred             HcCCceEEECchhhhChHHHHHHHHHc-CCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEe
Confidence            46899988865443  34555554321 22367777531100             1122446777788889999976553


Q ss_pred             eecC----CHhHHHHHHHHhccCCCCEEEEE-cCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhh
Q 015614          161 FSVN----DITEIARIFQLLSHCQVPIIAYS-VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTY  229 (403)
Q Consensus       161 ~~~~----~~~D~~~ll~~~~~~~~p~i~~~-MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~  229 (403)
                      ....    ..-+...+.++....+.|+|+.+ ......+-+++..  +. .....+..+--.|+++++++++.+
T Consensus       170 ~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~--~g-~dgv~vg~al~~~~~~~~~~~~~~  240 (243)
T cd04731         170 SMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEE--GG-ADAALAASIFHFGEYTIAELKEYL  240 (243)
T ss_pred             ccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHh--CC-CCEEEEeHHHHcCCCCHHHHHHHH
Confidence            2222    11122233333444578887653 3333345555432  11 122223333447888888877654

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=89.65  E-value=0.52  Score=52.21  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+++++|||+|.||.++++.|++.|.+|+|+.+.
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~  463 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL  463 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            45789999999999999999999999999999874

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=89.57  E-value=0.46  Score=48.82  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +++|+++|.|+ ||.|++++..|.+.|++|.+++|+.+
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~  213 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSD  213 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46889999996 88899999999999999988888643

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=89.51  E-value=0.74  Score=45.55  Aligned_cols=38  Identities=16%  Similarity=0.104  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .++++++.|+|-|..|++++.-|...|++|+.++|+.+
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~  170 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRK  170 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            46789999999999999999999999999999998753

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=89.45  E-value=0.52  Score=45.24  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=30.2

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..++|+|+|.++.++++.|++.|.+|.|+.|..
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~   58 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL   58 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence            469999999999999999999999999998864

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.39  E-value=2  Score=42.14  Aligned_cols=123  Identities=13%  Similarity=0.234  Sum_probs=73.2

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ...++++|++.....++.    +++.+.++.+ .++...|+-|-.|....+  ...++.++|. +.+-..+-+-    -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g  127 (293)
T PRK14185         53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR-KDVDGFHPIN----VG  127 (293)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcCCCCHhh----HH
Confidence            457889999887666553    3566666666 457899999999975221  1111111110 1111111000    01


Q ss_pred             eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHC----CCeEEEEe
Q 015614          331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSR----GARVVIFD  398 (403)
Q Consensus       331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~----g~~i~v~n  398 (403)
                      +++ |    .-.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+.    ++.|+++.
T Consensus       128 ~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch  192 (293)
T PRK14185        128 RMSIGLPCFVSATPNGILELLKRY-------------HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCH  192 (293)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEec
Confidence            111 1    112345677766543             25789999999997666 99999999887    57888875

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=89.11  E-value=0.54  Score=48.82  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=35.6

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..++||+|+|||+|-+|--++-.|.+.|.+|+++-|++.
T Consensus       171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         171 EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            457899999999999999999999999999999999863

>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV

Probab=89.05  E-value=28  Score=35.30  Aligned_cols=109  Identities=15%  Similarity=0.100  Sum_probs=69.4

Q ss_pred             HHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccccc------hHH---HHHHhccC---CCc
Q 015614           58 IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKVAS------NIL---GKQYSSHQ---SGT  124 (403)
Q Consensus        58 ~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv-DiEl~~~~------~~~---~~l~~~~~---~~~  124 (403)
                      ++....+.|++.|.=.+ ++|.   +.++..++++..++.|+|.| |.|..-..      +..   .+.+...+   ++.
T Consensus       123 ~~~gv~~rPli~Ti~kp-~~gl---d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~  198 (367)
T cd08205         123 RLLGVHDRPLLGTIIKP-SIGL---SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRK  198 (367)
T ss_pred             HHhCCCCCCeeeeeeCC-CCCC---CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCc
Confidence            33334588999997653 4454   77888899999999999998 66654322      111   11121112   343


Q ss_pred             EEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHH
Q 015614          125 RFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQ  174 (403)
Q Consensus       125 kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~  174 (403)
                      ++++.-.    |-+.+|+.+..+.+++.|+|.+=+....--......+.+
T Consensus       199 ~~y~~ni----t~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~  244 (367)
T cd08205         199 TLYAPNI----TGDPDELRRRADRAVEAGANALLINPNLVGLDALRALAE  244 (367)
T ss_pred             ceEEEEc----CCCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHh
Confidence            4433322    233589999999999999999888877666555555543

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=89.05  E-value=0.62  Score=48.66  Aligned_cols=36  Identities=36%  Similarity=0.407  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++++|+|+|.+|.++++.|++.|.+|+|+.+..
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~  174 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP  174 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            357899999999999999999999999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=88.94  E-value=2.4  Score=42.74  Aligned_cols=123  Identities=18%  Similarity=0.247  Sum_probs=73.6

Q ss_pred             HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCCe
Q 015614          259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDGK  331 (403)
Q Consensus       259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g~  331 (403)
                      ...+++|++..-..++.    +++.+.++.+ .++...|+-|-.|+...+-  ..++.++|. +.+-..+-.-    -|+
T Consensus       126 K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~-KDVDGl~p~N----~G~  200 (364)
T PLN02616        126 KACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE-KDVDGFHPLN----IGR  200 (364)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----hHH
Confidence            56789999876444443    2566677777 4577999999999852210  011111110 1111111000    011


Q ss_pred             EE-E------EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          332 LI-G------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       332 l~-G------~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      +. |      .-.--.|++.-|+..             +.+++||+++|+|-+.. +|.++.-|.+.|+.|+++..
T Consensus       201 L~~g~~~~~f~PCTp~avielL~~y-------------~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs  263 (364)
T PLN02616        201 LAMRGREPLFVPCTPKGCIELLHRY-------------NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS  263 (364)
T ss_pred             HhcCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCC
Confidence            21 1      112246777766543             25789999999997665 99999999999999988864

>PLN02477 glutamate dehydrogenase

Probab=88.91  E-value=1.4  Score=45.37  Aligned_cols=54  Identities=30%  Similarity=0.486  Sum_probs=43.7

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEecC
Q 015614          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID  400 (403)
Q Consensus       338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR~  400 (403)
                      -+.|...+++..+...         +..++|++++|.|-|.+++.++..|.+.|++|+ |.+.+
T Consensus       185 Tg~Gv~~~~~~~~~~~---------g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        185 TGRGVVFATEALLAEH---------GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             chHHHHHHHHHHHHHc---------CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence            4578888888877632         246789999999999999999999999999766 66543

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=88.90  E-value=5.3  Score=36.41  Aligned_cols=80  Identities=15%  Similarity=0.257  Sum_probs=51.0

Q ss_pred             EecccCCHHHHHHHHHHHHhcCCCEEEEE-ec--CCCCCCC-chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614           15 APLMAQSVEQVLSNMYQAKAEGADVVEIR-LD--CINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (403)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~~D~vElR-lD--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (403)
                      .+|...|.+....+++.+...|+|.||+- .|  ..++... .+.++.+++..+.|+.+.+...        +.+   ++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~--------~~~---~~   71 (210)
T TIGR01163         3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVE--------NPD---RY   71 (210)
T ss_pred             chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeC--------CHH---HH
Confidence            46667777778888888888899999994 23  2233222 3567778766677864444432        122   23


Q ss_pred             HHHHHHcCCcEEEEe
Q 015614           91 LHLAEDLGADYVDFE  105 (403)
Q Consensus        91 l~~~~~~g~~yvDiE  105 (403)
                      ++.+.+.|++.|=+-
T Consensus        72 ~~~~~~~gadgv~vh   86 (210)
T TIGR01163        72 IEDFAEAGADIITVH   86 (210)
T ss_pred             HHHHHHcCCCEEEEc
Confidence            566778888875543

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=88.86  E-value=15  Score=37.34  Aligned_cols=140  Identities=16%  Similarity=0.168  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEE-eecCCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIV-YRPKWAGGLYEGDEHKRLEALHLAEDLGADY  101 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T-~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~y  101 (403)
                      ++-+.-++...+.|+|.||+-.=...+ .+.+.+..+.+....+.+.+ .|..             .+-++.+.+.|+++
T Consensus        26 e~k~~ia~~L~~~GV~~IE~G~p~~~~-~~~e~i~~i~~~~~~~~i~~~~r~~-------------~~di~~a~~~g~~~   91 (378)
T PRK11858         26 EEKLAIARMLDEIGVDQIEAGFPAVSE-DEKEAIKAIAKLGLNASILALNRAV-------------KSDIDASIDCGVDA   91 (378)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCCcCh-HHHHHHHHHHhcCCCeEEEEEcccC-------------HHHHHHHHhCCcCE
Confidence            333333444455799999985322221 11234555554322233333 3321             12256778889999


Q ss_pred             EEEeccccch------------HHH---HHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC-
Q 015614          102 VDFELKVASN------------ILG---KQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN-  164 (403)
Q Consensus       102 vDiEl~~~~~------------~~~---~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~-  164 (403)
                      |.+-+...+-            .++   +.+ .++..+..+.++.=+...+ +.+.+.++++.+.+.|+|.+-++=+.- 
T Consensus        92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~-~~~~l~~~~~~~~~~Ga~~I~l~DT~G~  170 (378)
T PRK11858         92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRT-DLDFLIEFAKAAEEAGADRVRFCDTVGI  170 (378)
T ss_pred             EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCC-CHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence            9987665431            111   122 2344566777775454444 367899999999999999988885553 


Q ss_pred             -CHhHHHHHHHHhc
Q 015614          165 -DITEIARIFQLLS  177 (403)
Q Consensus       165 -~~~D~~~ll~~~~  177 (403)
                       ++.++.++.+.+.
T Consensus       171 ~~P~~v~~lv~~l~  184 (378)
T PRK11858        171 LDPFTMYELVKELV  184 (378)
T ss_pred             CCHHHHHHHHHHHH
Confidence             4778877776653

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=88.78  E-value=4.5  Score=40.39  Aligned_cols=90  Identities=12%  Similarity=0.157  Sum_probs=65.6

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC------------CC---chHHHHHHhcCCCcEEEEeecCCCC
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF------------QP---GKDLEIILTKKPLPVLIVYRPKWAG   77 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~~~PiI~T~R~~~eG   77 (403)
                      +.+.|.+.+.+++..-++.+.+.|+|.|||-..+-...            ++   .+.++.+++..+.|+.+-+|-..++
T Consensus        67 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~  146 (333)
T PRK11815         67 VALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD  146 (333)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC
Confidence            57999999999999888888788999999988764210            11   1344556666688888877854443


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614           78 GLYEGDEHKRLEALHLAEDLGADYVDFE  105 (403)
Q Consensus        78 G~~~~~~~~~~~ll~~~~~~g~~yvDiE  105 (403)
                      .   .+.++..++.+.+.+.|++++.+-
T Consensus       147 ~---~t~~~~~~~~~~l~~aG~d~i~vh  171 (333)
T PRK11815        147 Q---DSYEFLCDFVDTVAEAGCDTFIVH  171 (333)
T ss_pred             C---cCHHHHHHHHHHHHHhCCCEEEEc
Confidence            2   234566788888889999998876

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=88.77  E-value=34  Score=35.90  Aligned_cols=205  Identities=15%  Similarity=0.120  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEE----EecC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614           23 EQVLSNMYQAKAEGADVVEI----RLDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLA   94 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~   94 (403)
                      ++++.-+...-..|.+.+|.    ..|-   +...+|.+.+..+++.. +.|+-.=+|..+==|..+.+++-...+++.+
T Consensus        35 ~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a  114 (468)
T PRK12581         35 EDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLS  114 (468)
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHH
Confidence            44444444445569999999    8883   22335677888888765 5677777774433454455566666678999


Q ss_pred             HHcCCcEEEEeccc--cchHHHHHHhccCC--CcEEEEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015614           95 EDLGADYVDFELKV--ASNILGKQYSSHQS--GTRFIVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DI  166 (403)
Q Consensus        95 ~~~g~~yvDiEl~~--~~~~~~~l~~~~~~--~~kiI~S~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~~  166 (403)
                      .+.|++.+=|=-.+  .+.....+...++.  .+.+-++|-.   .|  +.+.+.+..+++.+.|||.+-|+=|+-  ++
T Consensus       115 ~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~---sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P  191 (468)
T PRK12581        115 AQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT---SPVHTLNYYLSLVKELVEMGADSICIKDMAGILTP  191 (468)
T ss_pred             HHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe---CCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCH
Confidence            99998887663222  22222222222222  3334555532   44  457789999999999999988887764  57


Q ss_pred             hHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          167 TEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       167 ~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      .++..+.+.+.+. +.|+-.=  ++--.+..+-+..-.-|....-+++.. +.-.||++.+++...++
T Consensus       192 ~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~  259 (468)
T PRK12581        192 KAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALK  259 (468)
T ss_pred             HHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHH
Confidence            8888887776543 4453211  112222233333333344333333332 12347999988877665

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=88.76  E-value=0.42  Score=46.86  Aligned_cols=36  Identities=33%  Similarity=0.437  Sum_probs=32.4

Q ss_pred             CCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       368 ~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      |+=++|-|| .|.||+-+..|++.|.+|++++||.+|
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~K   85 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEK   85 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHH
Confidence            567888896 788999999999999999999999875

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=88.69  E-value=0.56  Score=44.08  Aligned_cols=33  Identities=27%  Similarity=0.492  Sum_probs=30.3

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..++|+|||.++..++|.|++.|.+|.|+.|+.
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l   63 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL   63 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence            459999999999999999999999999998864

>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]

Probab=88.67  E-value=8.5  Score=35.92  Aligned_cols=175  Identities=13%  Similarity=0.120  Sum_probs=96.3

Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE--E
Q 015614           83 DEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL--V  160 (403)
Q Consensus        83 ~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi--a  160 (403)
                      +.+.+..+.+++.++|++.=.=|+..+-....+++...+-+--+|++--          .++-++......++-|=|  |
T Consensus        49 tk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~----------a~~dF~gidTs~pn~VVigla  118 (262)
T KOG3040|consen   49 TKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDD----------ALEDFDGIDTSDPNCVVIGLA  118 (262)
T ss_pred             cchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEccc----------chhhCCCccCCCCCeEEEecC
Confidence            4567888999999999755444555554444445422222333555432          222222222223444444  4


Q ss_pred             eecCCHhHHHHHHHHhccC-CCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhccccccce
Q 015614          161 FSVNDITEIARIFQLLSHC-QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTK  239 (403)
Q Consensus       161 ~~~~~~~D~~~ll~~~~~~-~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~  239 (403)
                      -..-+++.+.+.++++.+. +.++|+++-|..-+  |.-++.+|+             |     .....++|.   . -.
T Consensus       119 pe~F~y~~ln~AFrvL~e~~k~~LIai~kgryyk--r~~Gl~lgp-------------G-----~fv~aLeya---t-g~  174 (262)
T KOG3040|consen  119 PEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYK--RVDGLCLGP-------------G-----PFVAALEYA---T-GC  174 (262)
T ss_pred             cccccHHHHHHHHHHHHcCCCCeEEEecCceeee--eccccccCc-------------h-----HHHHHhhhc---c-Cc
Confidence            4444566777778887666 46788888876543  444444333             3     112233332   1 12


Q ss_pred             EEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCceEEec
Q 015614          240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVG  296 (403)
Q Consensus       240 ~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT  296 (403)
                      ..-++|+|     ||+++..+++.+|++..-..+--||+.+=+-+..+.|.+|+-|-
T Consensus       175 ~a~vvGKP-----~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVk  226 (262)
T KOG3040|consen  175 EATVVGKP-----SPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVK  226 (262)
T ss_pred             eEEEecCC-----CHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEee
Confidence            44588998     99999999999998754222211343333333344566676553

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=88.65  E-value=17  Score=33.95  Aligned_cols=197  Identities=18%  Similarity=0.250  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADY  101 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~y  101 (403)
                      ++.+.-++...+.|.|.||+=+-...+ ++.+.++.+++.. ..++..-+|.         .++.-...++.+...|++.
T Consensus        14 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~g~~~   83 (237)
T PF00682_consen   14 EEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCRA---------NEEDIERAVEAAKEAGIDI   83 (237)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEES---------CHHHHHHHHHHHHHTTSSE
T ss_pred             HHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeeee---------hHHHHHHHHHhhHhccCCE
Confidence            333333444455799999998333332 2234566655433 3455555552         2222222356667789999


Q ss_pred             EEEeccccch---------------HHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC-
Q 015614          102 VDFELKVASN---------------ILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN-  164 (403)
Q Consensus       102 vDiEl~~~~~---------------~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~-  164 (403)
                      +.+-....+.               ...+.. ..+..+.++-.+.=+...+ +.+++.+.++++.++|+|++-++=+.- 
T Consensus        84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~l~Dt~G~  162 (237)
T PF00682_consen   84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRT-DPEELLELAEALAEAGADIIYLADTVGI  162 (237)
T ss_dssp             EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGS-SHHHHHHHHHHHHHHT-SEEEEEETTS-
T ss_pred             EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccc-cHHHHHHHHHHHHHcCCeEEEeeCccCC
Confidence            9987766541               111222 3345567776665443333 457899999999999999998885553 


Q ss_pred             -CHhHHHHHHHHhccC-C-CCEEEEEcCccc--hhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          165 -DITEIARIFQLLSHC-Q-VPIIAYSVGERG--LVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       165 -~~~D~~~ll~~~~~~-~-~p~i~~~MG~~G--~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                       ++.++..+++.+.+. + .|+-.=+=-..|  ...-+..-..|....=+++.+ +-..|+.+++++...++
T Consensus       163 ~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~~le~lv~~L~  234 (237)
T PF00682_consen  163 MTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNAPLEELVAALE  234 (237)
T ss_dssp             S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCccHHHHHHHHh
Confidence             588888888776543 3 333221111222  222222222344333333322 24589999998876654

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=88.63  E-value=0.53  Score=51.32  Aligned_cols=32  Identities=38%  Similarity=0.581  Sum_probs=30.3

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..|+|||+|-+|.+++|.|++.|.+|+|+.|.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~  292 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEAD  292 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence            57999999999999999999999999999986

>PRK14851 hypothetical protein; Provisional

Probab=88.59  E-value=0.5  Score=51.67  Aligned_cols=35  Identities=31%  Similarity=0.444  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++++|+|+|+||.|..++..|+..|+ +++|++-+
T Consensus        41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D   76 (679)
T PRK14851         41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD   76 (679)
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            346899999999999999999999999 99998754

>PRK06128 oxidoreductase; Provisional

Probab=88.42  E-value=0.72  Score=44.80  Aligned_cols=35  Identities=34%  Similarity=0.539  Sum_probs=30.5

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      +++|++||.|+ ||.|++++..|.+.|++|.+..|+
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            56799999995 899999999999999988877664

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=88.40  E-value=16  Score=35.18  Aligned_cols=191  Identities=14%  Similarity=0.135  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCC--chHHHHHHhcCCCcEEEEe-ecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKKPLPVLIVY-RPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~~~PiI~T~-R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      ++-+.-++...+.|+|.||+=-   +...+  .+.++.+.+....+-++++ |..         .    +=++.+.+.|+
T Consensus        22 ~~k~~i~~~L~~~Gv~~IEvG~---P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~---------~----~di~~a~~~g~   85 (262)
T cd07948          22 EDKIEIAKALDAFGVDYIELTS---PAASPQSRADCEAIAKLGLKAKILTHIRCH---------M----DDARIAVETGV   85 (262)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEC---CCCCHHHHHHHHHHHhCCCCCcEEEEecCC---------H----HHHHHHHHcCc
Confidence            3333334444567999999963   22222  2233444332222434443 422         1    12567778899


Q ss_pred             cEEEEeccccc------------hHHHHH---H-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614          100 DYVDFELKVAS------------NILGKQ---Y-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus       100 ~yvDiEl~~~~------------~~~~~l---~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~  163 (403)
                      +.|.+-+...+            +.++.+   + .++..+.++-++.=+-..+| .+.+.++++++.+.|+|.+-++=+.
T Consensus        86 ~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l~Dt~  164 (262)
T cd07948          86 DGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LVDLLRVYRAVDKLGVNRVGIADTV  164 (262)
T ss_pred             CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEECCcC
Confidence            99988664322            112212   2 23445677777776644555 5779999999999999988777554


Q ss_pred             C--CHhHHHHHHHHhccC-CCCEEEEEcCc--cchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          164 N--DITEIARIFQLLSHC-QVPIIAYSVGE--RGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       164 ~--~~~D~~~ll~~~~~~-~~p~i~~~MG~--~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      -  ++.++.++.+.+.+. +.|+-.=+=-.  .+...-+..-..|..+.=+++.+ +--.|+.+++++...++
T Consensus       165 G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGeraGn~~~e~~~~~l~  237 (262)
T cd07948         165 GIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGERNGITPLGGLIARMY  237 (262)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccccccCCccHHHHHHHHH
Confidence            3  578888887775543 44442211111  12222222222233332233322 23478888887776654

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=88.22  E-value=0.68  Score=48.17  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=30.4

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..|+|+|+|.||.+++..|++.|.+|.|+.|..
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            479999999999999999999999999998864

>PRK06436 glycerate dehydrogenase; Provisional

Probab=88.19  E-value=0.9  Score=44.79  Aligned_cols=37  Identities=27%  Similarity=0.451  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+.||++.|+|-|..|++++.-|+..|++|+.++|+.
T Consensus       119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~  155 (303)
T PRK06436        119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY  155 (303)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4679999999999999999998888899999999974

>PRK13984 putative oxidoreductase; Provisional

Probab=88.15  E-value=0.74  Score=49.60  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++++|+|+|.+|.++++.|.++|.+|+|+.+..
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~  316 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS  316 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            357899999999999999999999999999998753

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=88.15  E-value=4.1  Score=40.99  Aligned_cols=87  Identities=20%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             cccCCHHHHHHH----HHHHHhcCCCEEEEEecC-------CCC---C-CC-------------chHHHHHHhcCC----
Q 015614           17 LMAQSVEQVLSN----MYQAKAEGADVVEIRLDC-------INN---F-QP-------------GKDLEIILTKKP----   64 (403)
Q Consensus        17 l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~-------l~~---~-~~-------------~~~l~~l~~~~~----   64 (403)
                      ++..+++++..+    ++.+.+.|.|.|||-.-.       |.+   . ++             .+.+..+|+..+    
T Consensus       134 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~  213 (353)
T cd04735         134 LTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHAD  213 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccC
Confidence            344444444333    445567899999997642       111   1 11             145556666655    


Q ss_pred             CcEEEEeecCC----CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           65 LPVLIVYRPKW----AGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        65 ~PiI~T~R~~~----eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      .++.+.+|-..    +||.   +.++..++++.+.+.|+|||+|-.
T Consensus       214 ~~~~v~~R~s~~~~~~~g~---~~ee~~~i~~~L~~~GvD~I~Vs~  256 (353)
T cd04735         214 KDFILGYRFSPEEPEEPGI---RMEDTLALVDKLADKGLDYLHISL  256 (353)
T ss_pred             CCceEEEEECcccccCCCC---CHHHHHHHHHHHHHcCCCEEEecc
Confidence            67888888543    3342   457788899999999999999864

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=87.92  E-value=39  Score=35.65  Aligned_cols=32  Identities=31%  Similarity=0.327  Sum_probs=28.6

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEec
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR  399 (403)
                      ...++|||+|.+|.++|..|+++|.++.|+.+
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~  242 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE  242 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            46899999999999999999999998887754

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=87.90  E-value=12  Score=34.87  Aligned_cols=119  Identities=18%  Similarity=0.193  Sum_probs=71.9

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      .++..+...+.++....++...+.|.++||+-+.   ..+..+.++.+++..+- +++-.=+.       .++    +-.
T Consensus        16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~---~~~~~~~I~~l~~~~p~-~~IGAGTV-------l~~----~~a   80 (212)
T PRK05718         16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLR---TPAALEAIRLIAKEVPE-ALIGAGTV-------LNP----EQL   80 (212)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecC---CccHHHHHHHHHHHCCC-CEEEEeec-------cCH----HHH
Confidence            4566789999999999998888889999999943   22223466677665442 32221111       122    335


Q ss_pred             HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.+++.|++|+=.--.. ++.++..   ++.+.-+|=..    -||+  |    ..++.++|+|++|+
T Consensus        81 ~~a~~aGA~FivsP~~~-~~vi~~a---~~~~i~~iPG~----~Tpt--E----i~~a~~~Ga~~vKl  134 (212)
T PRK05718         81 AQAIEAGAQFIVSPGLT-PPLLKAA---QEGPIPLIPGV----STPS--E----LMLGMELGLRTFKF  134 (212)
T ss_pred             HHHHHcCCCEEECCCCC-HHHHHHH---HHcCCCEeCCC----CCHH--H----HHHHHHCCCCEEEE
Confidence            67889999997654332 2333322   22333333121    2442  2    45577889999999

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=87.84  E-value=0.56  Score=49.44  Aligned_cols=36  Identities=36%  Similarity=0.289  Sum_probs=32.1

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+.+++|+|+|.+|++++..++.+|+.|++++++.+
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357999999999999999999999999999888653

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=87.80  E-value=14  Score=33.22  Aligned_cols=134  Identities=22%  Similarity=0.247  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCch---HHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      +++...++.+++.|+++|-+|.=-+...+..+   .+..+.+..+.|+|+.-|.                  +.+.+.++
T Consensus        12 ~~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~------------------~la~~~~~   73 (180)
T PF02581_consen   12 DDFLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRV------------------DLALELGA   73 (180)
T ss_dssp             CHHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-H------------------HHHHHCT-
T ss_pred             chHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCH------------------HHHHhcCC
Confidence            56777788888999999999986554322112   2333334567899987432                  23566889


Q ss_pred             cEEEEeccccc-hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec--CCHh-----HHHH
Q 015614          100 DYVDFELKVAS-NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV--NDIT-----EIAR  171 (403)
Q Consensus       100 ~yvDiEl~~~~-~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~--~~~~-----D~~~  171 (403)
                      +.|=+.....+ ...+.+   ...+..|=.|.|+      .+|    +.++.+.|+|.+=+-..-  .|..     ....
T Consensus        74 dGvHl~~~~~~~~~~r~~---~~~~~~ig~S~h~------~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~  140 (180)
T PF02581_consen   74 DGVHLGQSDLPPAEARKL---LGPDKIIGASCHS------LEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDG  140 (180)
T ss_dssp             SEEEEBTTSSSHHHHHHH---HTTTSEEEEEESS------HHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHH
T ss_pred             CEEEecccccchHHhhhh---cccceEEEeecCc------HHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHH
Confidence            99888665432 122222   2345566679997      233    566678899988765431  2222     3344


Q ss_pred             HHHHhccCCCCEEEEE
Q 015614          172 IFQLLSHCQVPIIAYS  187 (403)
Q Consensus       172 ll~~~~~~~~p~i~~~  187 (403)
                      +.++....++|+++++
T Consensus       141 l~~~~~~~~~pv~AlG  156 (180)
T PF02581_consen  141 LREIARASPIPVYALG  156 (180)
T ss_dssp             HHHHHHHTSSCEEEES
T ss_pred             HHHHHHhCCCCEEEEc
Confidence            4455555678987764

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=87.79  E-value=5.4  Score=39.90  Aligned_cols=76  Identities=14%  Similarity=0.009  Sum_probs=48.3

Q ss_pred             HHHHHhcCCCEEEEEecC--C--------CCC-CC-------------chHHHHHHhcCCC-cEEEEeecC-CC---CCC
Q 015614           29 MYQAKAEGADVVEIRLDC--I--------NNF-QP-------------GKDLEIILTKKPL-PVLIVYRPK-WA---GGL   79 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~--l--------~~~-~~-------------~~~l~~l~~~~~~-PiI~T~R~~-~e---GG~   79 (403)
                      +..+.+.|.|.|||-.-+  |        .+. ++             .+.+..+|+.... |  +++|-. .|   ||.
T Consensus       158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~--v~vRis~~~~~~~~~  235 (338)
T cd02933         158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR--VGIRLSPFGTFNDMG  235 (338)
T ss_pred             HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc--eEEEECccccCCCCC
Confidence            445566899999998765  1        111 11             1455566665543 5  566643 22   233


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           80 YEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      +..+.++..++.+.+.+.|+|||+|-.
T Consensus       236 ~~~~~ee~~~~~~~l~~~g~d~i~vs~  262 (338)
T cd02933         236 DSDPEATFSYLAKELNKRGLAYLHLVE  262 (338)
T ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence            334668888999999999999999843

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=87.68  E-value=0.68  Score=46.84  Aligned_cols=32  Identities=38%  Similarity=0.625  Sum_probs=30.2

Q ss_pred             eEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       370 ~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++|+|||-++.|.+|+|++.|-+|.|+.|+.
T Consensus        47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298|consen   47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             cEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence            49999999999999999999999999999985

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=87.68  E-value=0.64  Score=46.04  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=31.4

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .+++++|.|+|+.+.+++..++.+|+ +|+++.|+.+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~  205 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR  205 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence            47899999999999999988888999 7888887654

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=87.66  E-value=23  Score=33.57  Aligned_cols=117  Identities=13%  Similarity=0.039  Sum_probs=64.9

Q ss_pred             HHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccch----------------HHHHHH-
Q 015614           55 DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN----------------ILGKQY-  117 (403)
Q Consensus        55 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~----------------~~~~l~-  117 (403)
                      ++..+.  .+.|+|+.+|..        +.+++.+..+...+ ++++|||-...+..                .+.+++ 
T Consensus        60 e~~~~~--~~~~vivnv~~~--------~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~  128 (231)
T TIGR00736        60 QIKKAE--SRALVSVNVRFV--------DLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLT  128 (231)
T ss_pred             HHHHHh--hcCCEEEEEecC--------CHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHH
Confidence            444442  467999999953        66788888777755 69999998777553                122222 


Q ss_pred             hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH--hHHHHHHHHhccC-CCCEEE
Q 015614          118 SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI--TEIARIFQLLSHC-QVPIIA  185 (403)
Q Consensus       118 ~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~--~D~~~ll~~~~~~-~~p~i~  185 (403)
                      ..+..+..|.+=.--  .. +..+..++.+.+.+.|+|.+-+-.+-...  .|...+-++.... ++|+|+
T Consensus       129 av~~~~~PVsvKiR~--~~-~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg  196 (231)
T TIGR00736       129 KMKELNKPIFVKIRG--NC-IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG  196 (231)
T ss_pred             HHHcCCCcEEEEeCC--CC-CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE
Confidence            222112222221110  00 12345677777788888877664433221  3444444444444 366654

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=87.60  E-value=6.8  Score=36.37  Aligned_cols=121  Identities=19%  Similarity=0.249  Sum_probs=70.0

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      .++..+...+.++....++...+.|..++|+.++-   .+..+.++.+++..+ -+++-.=+     -  .+.+    -.
T Consensus         9 ~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~-~~~vGAGT-----V--l~~~----~a   73 (204)
T TIGR01182         9 KIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVP-DALIGAGT-----V--LNPE----QL   73 (204)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCC-CCEEEEEe-----C--CCHH----HH
Confidence            34566889999999999998899999999998853   111245666665443 13332111     1  1222    24


Q ss_pred             HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015614           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF  161 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~  161 (403)
                      +.+++.|++|+ +-=.+.++..+.   .++.+.-+|--    --||+  |    +.++.++|+|++|+--
T Consensus        74 ~~a~~aGA~Fi-vsP~~~~~v~~~---~~~~~i~~iPG----~~Tpt--E----i~~A~~~Ga~~vKlFP  129 (204)
T TIGR01182        74 RQAVDAGAQFI-VSPGLTPELAKH---AQDHGIPIIPG----VATPS--E----IMLALELGITALKLFP  129 (204)
T ss_pred             HHHHHcCCCEE-ECCCCCHHHHHH---HHHcCCcEECC----CCCHH--H----HHHHHHCCCCEEEECC
Confidence            56788899998 222222333222   22233333321    23553  3    3456678999999854

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=87.60  E-value=0.72  Score=46.07  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=33.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      .|++++|.|+||.+..++.-++.+|++|+.+.|+.+|
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K  202 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK  202 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence            4899999999999998888888899999999998764

>PLN02985 squalene monooxygenase

Probab=87.25  E-value=1.1  Score=47.60  Aligned_cols=34  Identities=32%  Similarity=0.573  Sum_probs=31.1

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...++|+|||-+|.+++.+|++.|.+|.|+.|+.
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            3579999999999999999999999999999864

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=87.24  E-value=25  Score=32.74  Aligned_cols=141  Identities=16%  Similarity=0.170  Sum_probs=84.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHh---cCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT---KKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (403)
                      .+.+++.+..+++.+.+...|=+        .| ..+...++   .++.. +.|+=.=+.|..   +-+.+..=.+.+++
T Consensus        15 ~t~~~i~~lc~~A~~~~~~avcv--------~p-~~v~~a~~~l~~~~v~-v~tVigFP~G~~---~~~~K~~E~~~Av~   81 (211)
T TIGR00126        15 TTEEDIITLCAQAKTYKFAAVCV--------NP-SYVPLAKELLKGTEVR-ICTVVGFPLGAS---TTDVKLYETKEAIK   81 (211)
T ss_pred             CCHHHHHHHHHHHHhhCCcEEEe--------CH-HHHHHHHHHcCCCCCe-EEEEeCCCCCCC---cHHHHHHHHHHHHH
Confidence            34677777777777666655543        22 23433332   23333 444433334332   23455555678999


Q ss_pred             cCCcEEEEeccccc----------hHHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--e--
Q 015614           97 LGADYVDFELKVAS----------NILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--F--  161 (403)
Q Consensus        97 ~g~~yvDiEl~~~~----------~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia--~--  161 (403)
                      .|++-||+=++...          +.+.++.. .+.-..|+|+-...    -+.+++....+-+.+.|||++|--  +  
T Consensus        82 ~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~----L~~~ei~~a~~ia~eaGADfvKTsTGf~~  157 (211)
T TIGR00126        82 YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL----LTDEEIRKACEICIDAGADFVKTSTGFGA  157 (211)
T ss_pred             cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCC
Confidence            99999998766531          12233332 22234677776543    244678888888889999999987  3  


Q ss_pred             ecCCHhHHHHHHHHhc
Q 015614          162 SVNDITEIARIFQLLS  177 (403)
Q Consensus       162 ~~~~~~D~~~ll~~~~  177 (403)
                      ...+.+|+..+.+...
T Consensus       158 ~gat~~dv~~m~~~v~  173 (211)
T TIGR00126       158 GGATVEDVRLMRNTVG  173 (211)
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            3356788877776644

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=87.20  E-value=6.3  Score=39.28  Aligned_cols=85  Identities=18%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC------CCC----chHHHHHHhcCCCcEEEEeecCCCCCCCC
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN------FQP----GKDLEIILTKKPLPVLIVYRPKWAGGLYE   81 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~------~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~   81 (403)
                      .+.++|.+.+.++....++.+.+.|+|+||+-+-+-..      .+.    .+.++.+++..++|+++-++..     + 
T Consensus       103 pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~-----~-  176 (334)
T PRK07565        103 PVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPY-----F-  176 (334)
T ss_pred             cEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCC-----c-
Confidence            35689999999888777777777799999996643111      111    1334566667789999988742     1 


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEe
Q 015614           82 GDEHKRLEALHLAEDLGADYVDFE  105 (403)
Q Consensus        82 ~~~~~~~~ll~~~~~~g~~yvDiE  105 (403)
                         ..-.++.+.+.+.|+++|.+=
T Consensus       177 ---~~~~~~a~~l~~~G~dgI~~~  197 (334)
T PRK07565        177 ---SNLANMAKRLDAAGADGLVLF  197 (334)
T ss_pred             ---hhHHHHHHHHHHcCCCeEEEE
Confidence               124456667778899999763

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=87.17  E-value=1  Score=42.41  Aligned_cols=37  Identities=16%  Similarity=0.080  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+++++|||+|+|.+|..=+..|.+.|++|+|++-+
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5677899999999999988888899999999999764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=87.15  E-value=0.79  Score=49.99  Aligned_cols=35  Identities=31%  Similarity=0.561  Sum_probs=31.9

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +..+|+|+|+|-+|.+.|.+|++.|++|.|+.|.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            34689999999999999999999999999999864

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=87.11  E-value=1.3  Score=44.93  Aligned_cols=37  Identities=24%  Similarity=0.382  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+.|+++.|+|.|..|++++.-|..+|++|..+++.
T Consensus       112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~  148 (378)
T PRK15438        112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPP  148 (378)
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCc
Confidence            5678999999999999999999999999999999864

>PLN02463 lycopene beta cyclase

Probab=87.03  E-value=0.8  Score=47.63  Aligned_cols=33  Identities=30%  Similarity=0.318  Sum_probs=30.1

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      -.++|+|+|-+|.+++++|++.|.+|.|+.+.+
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            479999999999999999999999999998754

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=87.00  E-value=1.4  Score=44.78  Aligned_cols=37  Identities=30%  Similarity=0.388  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+.||++.|+|.|..|+.++..|..+|++|.++++.
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~  148 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPP  148 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCc
Confidence            4678999999999999999999999999999999864

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=86.99  E-value=28  Score=32.92  Aligned_cols=152  Identities=20%  Similarity=0.246  Sum_probs=91.5

Q ss_pred             HHHHHhcCCCEEEEEecCCC-CCCCc-hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH---HHHHHHHHcCCcEEE
Q 015614           29 MYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL---EALHLAEDLGADYVD  103 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~---~ll~~~~~~g~~yvD  103 (403)
                      +..+...|||-|||.--+-. ...|+ -.++..++..++|+-.-+|++  ||.|-.++.+.-   +=+..+-++|+.-|=
T Consensus        14 l~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPR--gGdFvY~~~E~~iM~~DI~~~~~lG~~GVV   91 (241)
T COG3142          14 LLAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPR--GGDFVYSDDELEIMLEDIRLARELGVQGVV   91 (241)
T ss_pred             HHHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecC--CCCcccChHHHHHHHHHHHHHHHcCCCcEE
Confidence            34556789999999755543 23332 245666666899999999975  887766665443   334466778877665


Q ss_pred             Eeccc-----cchHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC--HhHHHHH-HH
Q 015614          104 FELKV-----ASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVND--ITEIARI-FQ  174 (403)
Q Consensus       104 iEl~~-----~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~--~~D~~~l-l~  174 (403)
                      +=.-.     +.+.+++|... .+  .+=+.||- |+.+|+.   .+-++++.++|  +-+|-+....  ..|.+.. -+
T Consensus        92 ~G~lt~dg~iD~~~le~Li~a-A~--gL~vTFHrAFD~~~d~---~~ale~li~~G--v~RILTsGg~~sa~eg~~~l~~  163 (241)
T COG3142          92 LGALTADGNIDMPRLEKLIEA-AG--GLGVTFHRAFDECPDP---LEALEQLIELG--VERILTSGGKASALEGLDLLKR  163 (241)
T ss_pred             EeeecCCCccCHHHHHHHHHH-cc--CCceeeehhhhhcCCH---HHHHHHHHHCC--CcEEecCCCcCchhhhHHHHHH
Confidence            53322     23345566533 22  35578887 9999863   44456666666  6777776643  3344333 33


Q ss_pred             HhccC-CCCEEEEEcCc
Q 015614          175 LLSHC-QVPIIAYSVGE  190 (403)
Q Consensus       175 ~~~~~-~~p~i~~~MG~  190 (403)
                      +..+. +.+.|..+-|-
T Consensus       164 li~~a~gri~Im~GaGV  180 (241)
T COG3142         164 LIEQAKGRIIIMAGAGV  180 (241)
T ss_pred             HHHHhcCCEEEEeCCCC
Confidence            44444 44555544443

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=86.96  E-value=14  Score=37.04  Aligned_cols=148  Identities=18%  Similarity=0.280  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      .|.+.-++|+.+..+.|||+|=+-+.-.+.   .+.+..+++..++|++.-+-       |      -.++...+++.|+
T Consensus        39 ~Dv~atv~Qi~~L~~aGceiVRvav~~~~~---a~al~~I~~~~~iPlvADIH-------F------d~~lAl~a~~~G~  102 (360)
T PRK00366         39 ADVEATVAQIKRLARAGCEIVRVAVPDMEA---AAALPEIKKQLPVPLVADIH-------F------DYRLALAAAEAGA  102 (360)
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEccCCHHH---HHhHHHHHHcCCCCEEEecC-------C------CHHHHHHHHHhCC
Confidence            456777888888889999999775553332   46788888889999996533       1      1234456677777


Q ss_pred             cEEEEecccc---chHHHHHH-hccCCCcEE-EEeccC---------C-CCCCC--HhHHHHHHHHHHHcCCCEEEEEee
Q 015614          100 DYVDFELKVA---SNILGKQY-SSHQSGTRF-IVSCNL---------D-CETPS--EEDLGYLVSRMQATGADIIKLVFS  162 (403)
Q Consensus       100 ~yvDiEl~~~---~~~~~~l~-~~~~~~~ki-I~S~H~---------f-~~tp~--~~~l~~~~~~~~~~gadivKia~~  162 (403)
                      +-+-|.=-..   ++.++.+. .++..+..| |+--|=         + ..||.  .+...+..+.+.++|.+=+|+-..
T Consensus       103 ~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~K  182 (360)
T PRK00366        103 DALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVK  182 (360)
T ss_pred             CEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence            7776643222   22333443 233333333 333221         1 12331  144566677788899999999999


Q ss_pred             cCCHhHHHHHHHHhcc-CCCCE
Q 015614          163 VNDITEIARIFQLLSH-CQVPI  183 (403)
Q Consensus       163 ~~~~~D~~~ll~~~~~-~~~p~  183 (403)
                      +.+..+..+..+.+.+ .+.|+
T Consensus       183 sS~v~~~i~ayrlla~~~dyPL  204 (360)
T PRK00366        183 ASDVQDLIAAYRLLAKRCDYPL  204 (360)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCc
Confidence            9998888777777543 46664

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=86.93  E-value=2.2  Score=44.27  Aligned_cols=55  Identities=20%  Similarity=0.299  Sum_probs=44.5

Q ss_pred             ccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEecC
Q 015614          337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID  400 (403)
Q Consensus       337 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR~  400 (403)
                      -.++|....++..+...         +..++|++++|=|.|.+|..++.-|.++|++|. |.+.+
T Consensus       215 ATG~Gv~~~~~~~l~~~---------~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        215 ATGYGLVYFVLEVLKKL---------NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             ccHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            45778888888877632         256789999999999999999999999999765 65543

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.69  E-value=4.6  Score=39.70  Aligned_cols=124  Identities=19%  Similarity=0.320  Sum_probs=74.1

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  330 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  330 (403)
                      ....+++|++.....++.    +++.+.++.+ .++...|+-|-+|.-..+  -..++.++| .+.+-..+..-    -|
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g  129 (297)
T PRK14168         55 IKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDP-DKDVDGFHPVN----VG  129 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhh----HH
Confidence            456788999876555432    3577777777 457899999999963211  011111111 11111111110    01


Q ss_pred             eE-EE------EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHC----CCeEEEEe
Q 015614          331 KL-IG------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSR----GARVVIFD  398 (403)
Q Consensus       331 ~l-~G------~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~----g~~i~v~n  398 (403)
                      ++ .|      .-.--.|++.-|+..             +.+++||+++|+|.+.. +|.++.-|.+.    ++.|+++.
T Consensus       130 ~l~~~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~h  196 (297)
T PRK14168        130 RLMIGGDEVKFLPCTPAGIQEMLVRS-------------GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVH  196 (297)
T ss_pred             HHhcCCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEec
Confidence            11 11      112256777766543             36789999999997666 99999999887    67898886


Q ss_pred             c
Q 015614          399 I  399 (403)
Q Consensus       399 R  399 (403)
                      +
T Consensus       197 s  197 (297)
T PRK14168        197 T  197 (297)
T ss_pred             C
Confidence            4

>PRK08324 short chain dehydrogenase; Validated

Probab=86.66  E-value=0.73  Score=50.46  Aligned_cols=38  Identities=45%  Similarity=0.686  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+.++.++|.| +||.|++++..|.+.|++|++++|+.+
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            45689999999 599999999999999999999999753

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=86.51  E-value=2.6  Score=36.77  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=31.5

Q ss_pred             CCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          364 SPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       364 ~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      .+++||+++|+|.+.. ++.++.-|.+.|+.++++++
T Consensus        24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~   60 (140)
T cd05212          24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW   60 (140)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCC
Confidence            5789999999997665 99999999999999999885

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07574 formate dehydrogenase; Provisional

Probab=86.50  E-value=1.1  Score=45.70  Aligned_cols=37  Identities=24%  Similarity=0.207  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+.|+++.|+|.|..|++++..|+..|++|..++|+.
T Consensus       189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~  225 (385)
T PRK07574        189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR  225 (385)
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence            4678999999999999999999999999999999974

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=86.44  E-value=28  Score=34.92  Aligned_cols=163  Identities=16%  Similarity=0.177  Sum_probs=89.9

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHH-HHhcCCCcEEEEeecC----CCCCCCCCCHHHHHHHHH
Q 015614           18 MAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEI-ILTKKPLPVLIVYRPK----WAGGLYEGDEHKRLEALH   92 (403)
Q Consensus        18 ~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~-l~~~~~~PiI~T~R~~----~eGG~~~~~~~~~~~ll~   92 (403)
                      +.+.+++++..+.+.+..++|+|=+  |      +.--+.. +.+..+.++|+++-..    ...|.  .++..-.--.+
T Consensus        44 ~~~~l~~~K~lv~~~l~~~asaILl--d------~~yG~~a~~~~~~~~GLil~~e~tg~d~t~~gr--~~~~~~~~sve  113 (340)
T PRK12858         44 SYTDLVDFKLAVSEALTPYASAILL--D------PEYGLPAAKVRDPNCGLLLSYEKTGYDATAPGR--LPDLLDNWSVR  113 (340)
T ss_pred             chhhHHHHHHHHHHHHhhCCCEEEE--c------cccChhhhcccCCCCCeEEEecccccccCCCCC--CccccccccHH
Confidence            3457778888888887778888765  2      1000111 2234578899885311    11222  12111111246


Q ss_pred             HHHHcCCcEEEEeccccch-----------HHHHHH-hccCCCcEEEE---eccCCCCC--------CCHhHHHHHHHHH
Q 015614           93 LAEDLGADYVDFELKVASN-----------ILGKQY-SSHQSGTRFIV---SCNLDCET--------PSEEDLGYLVSRM  149 (403)
Q Consensus        93 ~~~~~g~~yvDiEl~~~~~-----------~~~~l~-~~~~~~~kiI~---S~H~f~~t--------p~~~~l~~~~~~~  149 (403)
                      .+.++|+|.|=+=+....+           .+.++. ..++.+.-+++   +|=.-...        ...+.+....+..
T Consensus       114 ~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~  193 (340)
T PRK12858        114 RIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEF  193 (340)
T ss_pred             HHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHH
Confidence            7889999987775544221           123333 23456777777   44321111        1123456666677


Q ss_pred             H--HcCCCEEEEEeecC--------------CHhHHHHHHHH-hccCCCCEEEEEcCc
Q 015614          150 Q--ATGADIIKLVFSVN--------------DITEIARIFQL-LSHCQVPIIAYSVGE  190 (403)
Q Consensus       150 ~--~~gadivKia~~~~--------------~~~D~~~ll~~-~~~~~~p~i~~~MG~  190 (403)
                      .  ++|+|++|+-++.+              +.++....++- ...+..|+|.++=|.
T Consensus       194 ~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~  251 (340)
T PRK12858        194 SKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV  251 (340)
T ss_pred             hhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC
Confidence            7  49999999988754              44555554433 334577887766554

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=86.42  E-value=2.2  Score=43.70  Aligned_cols=54  Identities=31%  Similarity=0.405  Sum_probs=41.8

Q ss_pred             eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-----------------hhHHHHHHHHHHHCCCeEEEEe
Q 015614          336 NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-----------------GGAGRALAFGAKSRGARVVIFD  398 (403)
Q Consensus       336 NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-----------------GGaarai~~al~~~g~~i~v~n  398 (403)
                      --|..=++..+++.+..           .+++|++++|-|+                 |+.|++++.+|.+.|++|+++.
T Consensus       167 ~~~~~~I~~~~~~~~~~-----------~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~  235 (399)
T PRK05579        167 MAEPEEIVAAAERALSP-----------KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS  235 (399)
T ss_pred             CCCHHHHHHHHHHHhhh-----------cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence            45666666666665531           2467899999987                 5589999999999999999988


Q ss_pred             cC
Q 015614          399 ID  400 (403)
Q Consensus       399 R~  400 (403)
                      |+
T Consensus       236 ~~  237 (399)
T PRK05579        236 GP  237 (399)
T ss_pred             CC
Confidence            75

>cd08230 glucose_DH Glucose dehydrogenase

Probab=86.41  E-value=0.79  Score=45.55  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++++|+|+|+.+..++..++..|++|++++|+
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~  205 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR  205 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            4789999999999999998888899999888873

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=86.40  E-value=1.1  Score=46.99  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=31.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++++|+|+|-+|.+++..|.+.|.+|+|+.+.
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~  175 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERE  175 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecC
Confidence            4689999999999999999999999999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=86.19  E-value=3.1  Score=41.30  Aligned_cols=48  Identities=19%  Similarity=0.301  Sum_probs=38.3

Q ss_pred             CCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015614          136 TPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA  185 (403)
Q Consensus       136 tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~  185 (403)
                      |-+.+...+++.++.+.|||||++|+.  +.++...+-......+.|+++
T Consensus        30 T~Dv~atv~QI~~L~~aGceiVRvavp--~~~~A~al~~I~~~~~iPlVA   77 (346)
T TIGR00612        30 TIDIDSTVAQIRALEEAGCDIVRVTVP--DRESAAAFEAIKEGTNVPLVA   77 (346)
T ss_pred             chhHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHhCCCCCEEE
Confidence            445567888899999999999999998  667776676676777888876

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=86.19  E-value=0.91  Score=47.90  Aligned_cols=33  Identities=39%  Similarity=0.482  Sum_probs=29.9

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..|+|+|+|+++-++++.+++.|++|.|+.+..
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~   94 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP   94 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            469999999999999999999999999988754

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=86.18  E-value=0.92  Score=43.56  Aligned_cols=35  Identities=26%  Similarity=0.240  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +.+.+|+|+|+||.|-.++..|...|+ +|+|++-+
T Consensus        24 L~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD   59 (287)
T PTZ00245         24 LMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEG   59 (287)
T ss_pred             HhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCC
Confidence            446789999999999999999999999 99998854

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=86.17  E-value=6.8  Score=39.01  Aligned_cols=77  Identities=21%  Similarity=0.308  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhcCCCEEEEEecC-------CC---CC-CC-------------chHHHHHHhcC--CCcEEEEeecC--CC
Q 015614           25 VLSNMYQAKAEGADVVEIRLDC-------IN---NF-QP-------------GKDLEIILTKK--PLPVLIVYRPK--WA   76 (403)
Q Consensus        25 ~~~~~~~~~~~~~D~vElRlD~-------l~---~~-~~-------------~~~l~~l~~~~--~~PiI~T~R~~--~e   76 (403)
                      +...++.+.+.|.|.|||-.-+       |.   +. .+             .+.++.+|+..  +.|+.+-++..  .+
T Consensus       156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~  235 (336)
T cd02932         156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVE  235 (336)
T ss_pred             HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCC
Confidence            3444555677999999998743       11   11 11             24566677766  55665555432  12


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           77 GGLYEGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                      +|.   +.++..++++.+.+.|++||++
T Consensus       236 ~g~---~~~e~~~ia~~Le~~gvd~iev  260 (336)
T cd02932         236 GGW---DLEDSVELAKALKELGVDLIDV  260 (336)
T ss_pred             CCC---CHHHHHHHHHHHHHcCCCEEEE
Confidence            332   4677788888888889999886

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=86.16  E-value=11  Score=35.11  Aligned_cols=127  Identities=15%  Similarity=0.147  Sum_probs=67.8

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcC-CCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEG-ADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL   88 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~-~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (403)
                      -|.+..|+.+-+-.++...+.+   .| ..+++-|......  ..+.++.+++..+.|+.+.+.-..       ......
T Consensus         3 ~pi~~a~m~g~~~~~~~~~~~~---~G~ig~i~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~i~~~-------~~~~~~   70 (236)
T cd04730           3 YPIIQAPMAGVSTPELAAAVSN---AGGLGFIGAGYLTPEA--LRAEIRKIRALTDKPFGVNLLVPS-------SNPDFE   70 (236)
T ss_pred             CCEECCCCCCCCCHHHHHHHHh---CCCccccCCCCCCHHH--HHHHHHHHHHhcCCCeEEeEecCC-------CCcCHH
Confidence            3566666666555555444433   33 3454333221110  012344454444457666555321       001334


Q ss_pred             HHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015614           89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF  161 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~  161 (403)
                      +.++.+.+.|++.|.+--..+.+..+.+.   +.+.++|.+.|+      .+    ...++.+.|+|++++..
T Consensus        71 ~~~~~~~~~g~d~v~l~~~~~~~~~~~~~---~~~i~~i~~v~~------~~----~~~~~~~~gad~i~~~~  130 (236)
T cd04730          71 ALLEVALEEGVPVVSFSFGPPAEVVERLK---AAGIKVIPTVTS------VE----EARKAEAAGADALVAQG  130 (236)
T ss_pred             HHHHHHHhCCCCEEEEcCCCCHHHHHHHH---HcCCEEEEeCCC------HH----HHHHHHHcCCCEEEEeC
Confidence            56677788899999886554444444443   346788888763      22    33455567999998744

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=86.11  E-value=1.1  Score=44.82  Aligned_cols=37  Identities=27%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHH-HHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGA-KSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al-~~~g~~i~v~nR~~  401 (403)
                      .+.|+++.|+|.|..|++++..| ...|++|+.++|+.
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~  180 (332)
T PRK08605        143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFP  180 (332)
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            46789999999999999999998 55788999998865

>PRK14852 hypothetical protein; Provisional

Probab=86.09  E-value=0.8  Score=51.66  Aligned_cols=106  Identities=8%  Similarity=0.045  Sum_probs=64.0

Q ss_pred             cEEEEeccCCCCCC----CHhH-HHHHHHHHHHcC---CCEEEEEeecCCHhHH--HHHHHH------hccCCCCEEEEE
Q 015614          124 TRFIVSCNLDCETP----SEED-LGYLVSRMQATG---ADIIKLVFSVNDITEI--ARIFQL------LSHCQVPIIAYS  187 (403)
Q Consensus       124 ~kiI~S~H~f~~tp----~~~~-l~~~~~~~~~~g---adivKia~~~~~~~D~--~~ll~~------~~~~~~p~i~~~  187 (403)
                      ..+|+|.|..-..+    +.++ -...++...+.|   |++-|+|+-+..-.-.  ..++++      ....+-=+|.++
T Consensus        84 ~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~Vn  163 (989)
T PRK14852         84 HDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVN  163 (989)
T ss_pred             CcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            45667666421111    1222 233455566666   5788888644332211  122222      123345577888


Q ss_pred             cCccchhhhhhc-CCCCCcccccccCCCCCCCCCCHHHHHhhh
Q 015614          188 VGERGLVSQLLS-PKFNGALVYGSLKGTPVLGLPTVESLRQTY  229 (403)
Q Consensus       188 MG~~G~~SRil~-~~~gs~lty~~~~~~sApGQ~~~~~l~~~~  229 (403)
                      ==..+-..|+++ ..+|..=+|+.+..|+.--.+++.++.+.+
T Consensus       164 PkH~~FY~r~l~f~~ig~~r~~p~VnaPAvll~~dl~~~~~~~  206 (989)
T PRK14852        164 PKHVKFYTDIFLFKPFGEVRHYDTVDAPAVALRIDLHEAMDEL  206 (989)
T ss_pred             cchHHHHHHHhCCccccccccCCCCCcchhheecCHHHHHHHH
Confidence            888899999988 778888888888777666777888877655

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=86.01  E-value=30  Score=34.98  Aligned_cols=198  Identities=17%  Similarity=0.184  Sum_probs=107.9

Q ss_pred             EecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614           15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (403)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (403)
                      ++++..+..++...+   .+.|+|.||+=.-...+ ++.+.++.+.+.. ...+..-.|..             .+-++.
T Consensus        17 ~~~s~~~k~~ia~~L---~~~Gv~~IEvG~p~~~~-~~~e~i~~i~~~~~~~~v~~~~r~~-------------~~di~~   79 (363)
T TIGR02090        17 VSLTVEQKVEIARKL---DELGVDVIEAGFPIASE-GEFEAIKKISQEGLNAEICSLARAL-------------KKDIDK   79 (363)
T ss_pred             CCCCHHHHHHHHHHH---HHcCCCEEEEeCCCCCh-HHHHHHHHHHhcCCCcEEEEEcccC-------------HHHHHH
Confidence            444444444554444   45699999984211111 1234455555443 33344334532             122667


Q ss_pred             HHHcCCcEEEEeccccch------------HHH----HHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614           94 AEDLGADYVDFELKVASN------------ILG----KQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus        94 ~~~~g~~yvDiEl~~~~~------------~~~----~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      +.+.|++.|.+-+...+-            .++    .+...+..+.++-++.=+...+ +.+.+.++++++.+.|+|.+
T Consensus        80 a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~-~~~~l~~~~~~~~~~g~~~i  158 (363)
T TIGR02090        80 AIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRT-DIDFLIKVFKRAEEAGADRI  158 (363)
T ss_pred             HHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCC-CHHHHHHHHHHHHhCCCCEE
Confidence            888899998885544221            111    1222344567777777554444 36789999999999999998


Q ss_pred             EEEeecC--CHhHHHHHHHHhccC-CCCEEEEEcCccch--hhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          158 KLVFSVN--DITEIARIFQLLSHC-QVPIIAYSVGERGL--VSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       158 Kia~~~~--~~~D~~~ll~~~~~~-~~p~i~~~MG~~G~--~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      -++=+.-  ++.++.++.+.+.+. +.|+-.=+=-..|.  ..=+..-.-|....=+++.+ +-..|+.+++++...++
T Consensus       159 ~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~  237 (363)
T TIGR02090       159 NIADTVGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGERAGNAALEEVVMALK  237 (363)
T ss_pred             EEeCCCCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccccccccccHHHHHHHHH
Confidence            8886654  478888887776432 34432111111121  11111112233333333332 24578888888776554

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=85.99  E-value=1.7  Score=42.37  Aligned_cols=37  Identities=30%  Similarity=0.449  Sum_probs=30.2

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHC----CC-------eEEEEecC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSR----GA-------RVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~----g~-------~i~v~nR~  400 (403)
                      .+++..+++++|||.|+-+|+..|...    |.       +|++++|.
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~   68 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK   68 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence            456678999999999999888877654    76       69999875

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=85.92  E-value=29  Score=34.70  Aligned_cols=103  Identities=16%  Similarity=0.132  Sum_probs=59.6

Q ss_pred             HHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccch--------------HHHHHHhcc
Q 015614           56 LEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN--------------ILGKQYSSH  120 (403)
Q Consensus        56 l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~--------------~~~~l~~~~  120 (403)
                      +..+++. .++|+|+.+=.. .......+.+++.++++.+-+ ++|++++.+..+..              ..+.++...
T Consensus       128 ~~~l~~~~~~~pvivsI~~~-~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~  205 (344)
T PRK05286        128 AERLKKAYRGIPLGINIGKN-KDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQ  205 (344)
T ss_pred             HHHHHHhcCCCcEEEEEecC-CCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence            4444443 578999999422 111123456888888888765 59999998876531              222222211


Q ss_pred             CC---CcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614          121 QS---GTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus       121 ~~---~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~  163 (403)
                      ..   +..|++-.-.   ..+.+++.++.+.+.+.|+|.+-+.-+.
T Consensus       206 ~~~~~~~PV~vKlsp---~~~~~~~~~ia~~l~~~Gadgi~~~nt~  248 (344)
T PRK05286        206 AELHGYVPLLVKIAP---DLSDEELDDIADLALEHGIDGVIATNTT  248 (344)
T ss_pred             hccccCCceEEEeCC---CCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence            10   1345544321   1123467777788888888887776554

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=85.91  E-value=34  Score=33.45  Aligned_cols=144  Identities=14%  Similarity=0.207  Sum_probs=83.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCC----CCCCchHHHH-------HHhcCCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCIN----NFQPGKDLEI-------ILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~-------l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      +.++++.++.+..+.|||.|.+=--.-.    ..+..+++.+       +++..+.|  +++-|            .+-+
T Consensus        36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~--ISIDT------------~~~~  101 (282)
T PRK11613         36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW--ISVDT------------SKPE  101 (282)
T ss_pred             CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe--EEEEC------------CCHH
Confidence            5688888888888999999998633221    1222233333       33223444  45443            3456


Q ss_pred             HHHHHHHcCCcEE-EEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCH---------------hHHHHHHHHHHHcC
Q 015614           90 ALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE---------------EDLGYLVSRMQATG  153 (403)
Q Consensus        90 ll~~~~~~g~~yv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~---------------~~l~~~~~~~~~~g  153 (403)
                      .++.|++.|+++| ||---..++.++.+.   +.+..+|+-+ . .++|..               ..+.+.++.+.+.|
T Consensus       102 va~~AL~~GadiINDI~g~~d~~~~~~~a---~~~~~vVlmh-~-~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~G  176 (282)
T PRK11613        102 VIRESAKAGAHIINDIRSLSEPGALEAAA---ETGLPVCLMH-M-QGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAG  176 (282)
T ss_pred             HHHHHHHcCCCEEEECCCCCCHHHHHHHH---HcCCCEEEEc-C-CCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence            7889999999998 663211223333331   3466777774 3 233421               23456677787877


Q ss_pred             CCEEEEEe-----ecCCHhHHHHHHHHhcc---CCCCE
Q 015614          154 ADIIKLVF-----SVNDITEIARIFQLLSH---CQVPI  183 (403)
Q Consensus       154 adivKia~-----~~~~~~D~~~ll~~~~~---~~~p~  183 (403)
                      .+==+|+.     ...+.++++.+++-+..   .+.|+
T Consensus       177 I~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pi  214 (282)
T PRK11613        177 IAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPL  214 (282)
T ss_pred             CChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence            53225554     34677888888777543   35674

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=85.89  E-value=0.96  Score=44.45  Aligned_cols=34  Identities=32%  Similarity=0.484  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEec
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI  399 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR  399 (403)
                      +.+.-++|+|+||+|.-++-.|.+-|+ +|.|++-
T Consensus        72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDf  106 (430)
T KOG2018|consen   72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDF  106 (430)
T ss_pred             hcCcEEEEEecCchhHHHHHHHHHhcCceEEEech
Confidence            457889999999999999999999999 9998864

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=85.85  E-value=19  Score=34.54  Aligned_cols=161  Identities=17%  Similarity=0.256  Sum_probs=88.5

Q ss_pred             CCcccCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEE-----ecCCCCCCCchHH-------HHHHhcCCCcEE
Q 015614            1 MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIR-----LDCINNFQPGKDL-------EIILTKKPLPVL   68 (403)
Q Consensus         1 ~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElR-----lD~l~~~~~~~~l-------~~l~~~~~~PiI   68 (403)
                      ||+.|.++....= -. ..-+.++++..+.+..+.|||+|.+-     -+. ...++.+++       +.+++..+.|+ 
T Consensus         4 mgIlN~tpdSF~d-g~-~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~-~~i~~~~E~~rl~~~v~~i~~~~~~pl-   79 (257)
T cd00739           4 MGILNVTPDSFSD-GG-RFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGA-DPVSVEEELERVIPVLEALRGELDVLI-   79 (257)
T ss_pred             EEEEcCCCCCCCC-CC-CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCcE-
Confidence            5666666664321 00 01356888888888889999999993     332 222222233       33333345553 


Q ss_pred             EEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE-Eecccc-chHHHHHHhccCCCcEEEEeccCCCCCCCH-------
Q 015614           69 IVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVD-FELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPSE-------  139 (403)
Q Consensus        69 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvD-iEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~-------  139 (403)
                       .+-|            .+-+.+++|++.|+++|- |..... ++..+ +..  +.+..+|+ .|+ .+.|..       
T Consensus        80 -SIDT------------~~~~v~e~al~~G~~iINdisg~~~~~~~~~-l~~--~~~~~vV~-m~~-~g~p~~~~~~~~~  141 (257)
T cd00739          80 -SVDT------------FRAEVARAALEAGADIINDVSGGSDDPAMLE-VAA--EYGAPLVL-MHM-RGTPKTMQENPYY  141 (257)
T ss_pred             -EEeC------------CCHHHHHHHHHhCCCEEEeCCCCCCChHHHH-HHH--HcCCCEEE-ECC-CCCCcccccCCCc
Confidence             4333            345678899999988763 555433 23332 322  34677888 454 345532       


Q ss_pred             ----h----HHHHHHHHHHHcCCCEEEEEe-----ecCCHhHHHHHHHHhc---cCCCCE
Q 015614          140 ----E----DLGYLVSRMQATGADIIKLVF-----SVNDITEIARIFQLLS---HCQVPI  183 (403)
Q Consensus       140 ----~----~l~~~~~~~~~~gadivKia~-----~~~~~~D~~~ll~~~~---~~~~p~  183 (403)
                          +    .+.+.++.+.+.|-+-=||..     ...+.+++..+++-+.   +.+.|+
T Consensus       142 ~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pi  201 (257)
T cd00739         142 EDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPV  201 (257)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcE
Confidence                2    255667778888864224433     3345556655555433   336665

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=85.85  E-value=0.97  Score=37.70  Aligned_cols=33  Identities=12%  Similarity=0.180  Sum_probs=26.4

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      |++||+|.|..|.-++.+|.++|++..+++.++
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~   35 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNP   35 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCcceeccCch
Confidence            689999999999999999999999544444443

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=85.81  E-value=7.8  Score=38.78  Aligned_cols=76  Identities=17%  Similarity=0.220  Sum_probs=48.7

Q ss_pred             HHHHHhcCCCEEEEEecC-------CCC---C-CC-------------chHHHHHHhcCCCcEEEEeecC--CCCCCCCC
Q 015614           29 MYQAKAEGADVVEIRLDC-------INN---F-QP-------------GKDLEIILTKKPLPVLIVYRPK--WAGGLYEG   82 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~-------l~~---~-~~-------------~~~l~~l~~~~~~PiI~T~R~~--~eGG~~~~   82 (403)
                      ++.+.+.|.|.|||-.-.       |.+   . ++             .+.+..+|+..+.|+.+-++..  .+||   .
T Consensus       148 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G---~  224 (337)
T PRK13523        148 AVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGG---L  224 (337)
T ss_pred             HHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCC---C
Confidence            445566899999997763       111   1 11             1455566766666655544432  2233   2


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEecc
Q 015614           83 DEHKRLEALHLAEDLGADYVDFELK  107 (403)
Q Consensus        83 ~~~~~~~ll~~~~~~g~~yvDiEl~  107 (403)
                      +.++..++.+.+.+.|+|||+|-..
T Consensus       225 ~~~e~~~i~~~l~~~gvD~i~vs~g  249 (337)
T PRK13523        225 TVQDYVQYAKWMKEQGVDLIDVSSG  249 (337)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence            5688889999998999999998654

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=85.73  E-value=37  Score=33.16  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=55.7

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhc---CCCEEEEEecCCCC-----C--CC---chHHHHHHhcCCCcEEEEeecCCC
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAE---GADVVEIRLDCINN-----F--QP---GKDLEIILTKKPLPVLIVYRPKWA   76 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~---~~D~vElRlD~l~~-----~--~~---~~~l~~l~~~~~~PiI~T~R~~~e   76 (403)
                      .| +.++|.+. .++....++.....   ++|+|||=+=+=..     .  ++   .+.++.+++..++|+++-+|... 
T Consensus        92 ~p-vivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~-  168 (294)
T cd04741          92 KP-FFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT-  168 (294)
T ss_pred             Ce-EEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-
Confidence            44 56999998 88888777776553   69999998765321     1  11   12334455566899999998731 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHc--CCcEEE
Q 015614           77 GGLYEGDEHKRLEALHLAEDL--GADYVD  103 (403)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~--g~~yvD  103 (403)
                            +.++..++.+.+.+.  |++.|-
T Consensus       169 ------~~~~~~~~a~~l~~~~~G~~gi~  191 (294)
T cd04741         169 ------DPAQFDTLAEALNAFACPISFIT  191 (294)
T ss_pred             ------CHHHHHHHHHHHhccccCCcEEE
Confidence                  344455666666666  677665

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=85.68  E-value=0.92  Score=43.57  Aligned_cols=36  Identities=39%  Similarity=0.437  Sum_probs=30.7

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .+++++|+|+|+.+.+++..++.+|+ +|++++++.+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~  156 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD  156 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            57899999999999999988888999 5888877643

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK06484 short chain dehydrogenase; Validated

Probab=85.67  E-value=0.89  Score=47.66  Aligned_cols=36  Identities=36%  Similarity=0.509  Sum_probs=32.3

Q ss_pred             CCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+|.++|.| +||.|++++..|.+.|++|++++|+.
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~  303 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDA  303 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999 58889999999999999999999974

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=85.64  E-value=6.3  Score=38.83  Aligned_cols=87  Identities=20%  Similarity=0.218  Sum_probs=53.2

Q ss_pred             cccCCHHHHHH----HHHHHHhcCCCEEEEEec--CC-----CC---C-CC-------------chHHHHHHhcC--CCc
Q 015614           17 LMAQSVEQVLS----NMYQAKAEGADVVEIRLD--CI-----NN---F-QP-------------GKDLEIILTKK--PLP   66 (403)
Q Consensus        17 l~~~~~~e~~~----~~~~~~~~~~D~vElRlD--~l-----~~---~-~~-------------~~~l~~l~~~~--~~P   66 (403)
                      ++..++++++.    .++.+.+.|.|.|||-.-  ||     .+   . ++             .+.+..+|+..  +.|
T Consensus       131 mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~  210 (327)
T cd02803         131 MTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFP  210 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCce
Confidence            33344444433    344556689999999874  22     11   1 11             14455666665  556


Q ss_pred             EEEEeecC--CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           67 VLIVYRPK--WAGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        67 iI~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      +.+-++..  .++|   .+.++..++++.+.+.|++||++--
T Consensus       211 i~vris~~~~~~~g---~~~~e~~~la~~l~~~G~d~i~vs~  249 (327)
T cd02803         211 VGVRLSADDFVPGG---LTLEEAIEIAKALEEAGVDALHVSG  249 (327)
T ss_pred             EEEEechhccCCCC---CCHHHHHHHHHHHHHcCCCEEEeCC
Confidence            66655542  1233   3567888999999999999998744

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=85.63  E-value=31  Score=32.20  Aligned_cols=131  Identities=19%  Similarity=0.197  Sum_probs=78.1

Q ss_pred             HHHHHHHHhcCCCEEEEEecCCCCCCC---chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015614           26 LSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV  102 (403)
Q Consensus        26 ~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv  102 (403)
                      ...++++++.|++++-+|--.....+-   .+.+..+.+..+.|+|+.-|.                  ..|++.++|.|
T Consensus        24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~------------------dlA~~~~AdGV   85 (211)
T COG0352          24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRV------------------DLALAVGADGV   85 (211)
T ss_pred             HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcH------------------HHHHhCCCCEE
Confidence            677889999999999999876654321   123344445678999976431                  24557889998


Q ss_pred             EEecc-ccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--eecCCHhHH----HHHHHH
Q 015614          103 DFELK-VASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--FSVNDITEI----ARIFQL  175 (403)
Q Consensus       103 DiEl~-~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia--~~~~~~~D~----~~ll~~  175 (403)
                      =+.-+ ++....+++   ..++..|=+|.|+          .+...++.+.|+|++=+=  +...|.+|.    ...++.
T Consensus        86 HlGq~D~~~~~ar~~---~~~~~iIG~S~h~----------~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~  152 (211)
T COG0352          86 HLGQDDMPLAEAREL---LGPGLIIGLSTHD----------LEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLRE  152 (211)
T ss_pred             EcCCcccchHHHHHh---cCCCCEEEeecCC----------HHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHH
Confidence            88765 333333333   2344444468886          344566777889987653  222333333    222333


Q ss_pred             hcc-CCCCEEEEE
Q 015614          176 LSH-CQVPIIAYS  187 (403)
Q Consensus       176 ~~~-~~~p~i~~~  187 (403)
                      ..+ ..+|+++|+
T Consensus       153 ~~~~~~iP~vAIG  165 (211)
T COG0352         153 IRELVNIPVVAIG  165 (211)
T ss_pred             HHHhCCCCEEEEc
Confidence            333 358987764

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=85.54  E-value=21  Score=35.48  Aligned_cols=90  Identities=14%  Similarity=0.165  Sum_probs=57.3

Q ss_pred             CCeeEEEecccCC-------HHHHHHHHHHHHhcCCCEEEEEecCCCC-----CCC----chHHHHHHhcCC-----CcE
Q 015614            9 NTTMICAPLMAQS-------VEQVLSNMYQAKAEGADVVEIRLDCINN-----FQP----GKDLEIILTKKP-----LPV   67 (403)
Q Consensus         9 ~~~~icv~l~~~~-------~~e~~~~~~~~~~~~~D~vElRlD~l~~-----~~~----~~~l~~l~~~~~-----~Pi   67 (403)
                      ..|. .++|.+.+       .+|....++.+. ..+|++|+-+=+-..     ...    .+.++.+++...     +|+
T Consensus       128 ~~pl-ivsi~g~~~~~~~~~~~d~~~~~~~~~-~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv  205 (327)
T cd04738         128 GGPL-GVNIGKNKDTPLEDAVEDYVIGVRKLG-PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPL  205 (327)
T ss_pred             CCeE-EEEEeCCCCCcccccHHHHHHHHHHHH-hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCe
Confidence            3454 58887765       567776666653 359999997633211     111    123344554444     899


Q ss_pred             EEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015614           68 LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELK  107 (403)
Q Consensus        68 I~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~  107 (403)
                      ++-++..       .++++..++.+.+.+.|+++|.+--.
T Consensus       206 ~vKl~~~-------~~~~~~~~ia~~l~~aGad~I~~~n~  238 (327)
T cd04738         206 LVKIAPD-------LSDEELEDIADVALEHGVDGIIATNT  238 (327)
T ss_pred             EEEeCCC-------CCHHHHHHHHHHHHHcCCcEEEEECC
Confidence            9888742       23556778888888999999876543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=85.51  E-value=22  Score=33.38  Aligned_cols=134  Identities=11%  Similarity=0.060  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHhcC-CCEEEEEecCCCCCCCc---hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614           23 EQVLSNMYQAKAEG-ADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (403)
Q Consensus        23 ~e~~~~~~~~~~~~-~D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (403)
                      +++...++.++..| +++|-||---+...+..   +++..+-+..+.|+|+.-|                  +..+.+.|
T Consensus        26 ~~~~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~------------------~dlA~~~~   87 (221)
T PRK06512         26 AELAKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGD------------------SRIAGRVK   87 (221)
T ss_pred             ccHHHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCH------------------HHHHHHhC
Confidence            46777788888899 69999995544432111   2233333445789987732                  34466778


Q ss_pred             CcEEEEeccccchHHHHHHhccCCCcEEEE-e-ccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec-CCHh----HHHH
Q 015614           99 ADYVDFELKVASNILGKQYSSHQSGTRFIV-S-CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV-NDIT----EIAR  171 (403)
Q Consensus        99 ~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~-S-~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~-~~~~----D~~~  171 (403)
                      ++.|=+--+...  +.+.+.. .+..++|+ | +|+      .++.    .++.+.|+|++=+=-.. .+..    --..
T Consensus        88 adGVHLg~~d~~--~~~~r~~-~~~~~iiG~s~~~s------~~~a----~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~  154 (221)
T PRK06512         88 ADGLHIEGNLAA--LAEAIEK-HAPKMIVGFGNLRD------RHGA----MEIGELRPDYLFFGKLGADNKPEAHPRNLS  154 (221)
T ss_pred             CCEEEECccccC--HHHHHHh-cCCCCEEEecCCCC------HHHH----HHhhhcCCCEEEECCCCCCCCCCCCCCChH
Confidence            888765432111  1222211 23456777 5 443      2333    23556899988552111 1111    1123


Q ss_pred             HH-HHhccCCCCEEEEE
Q 015614          172 IF-QLLSHCQVPIIAYS  187 (403)
Q Consensus       172 ll-~~~~~~~~p~i~~~  187 (403)
                      ++ .+....++|+++++
T Consensus       155 ~l~~~~~~~~iPvvAIG  171 (221)
T PRK06512        155 LAEWWAEMIEIPCIVQA  171 (221)
T ss_pred             HHHHHHHhCCCCEEEEe
Confidence            34 33344578988886

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=85.48  E-value=30  Score=33.37  Aligned_cols=85  Identities=14%  Similarity=0.094  Sum_probs=54.2

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHH-hcCCCcEEEE
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIIL-TKKPLPVLIV   70 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~-~~~~~PiI~T   70 (403)
                      ..++.-.|+++.....++...+.|+|+|||-+-+-.+.-+                     .+.++.+| +..+.|+++.
T Consensus        14 ~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm   93 (259)
T PF00290_consen   14 PYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLM   93 (259)
T ss_dssp             EEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEE
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEE
Confidence            3457778999999988888888899999999988765422                     13456677 5679998765


Q ss_pred             eecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015614           71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVD  103 (403)
Q Consensus        71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvD  103 (403)
                      -.-.      +.-.--.-++++.+.+.|++-+=
T Consensus        94 ~Y~N------~i~~~G~e~F~~~~~~aGvdGlI  120 (259)
T PF00290_consen   94 TYYN------PIFQYGIERFFKEAKEAGVDGLI  120 (259)
T ss_dssp             E-HH------HHHHH-HHHHHHHHHHHTEEEEE
T ss_pred             eecc------HHhccchHHHHHHHHHcCCCEEE
Confidence            4421      00001122467788888876543

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=85.46  E-value=3.5  Score=41.26  Aligned_cols=48  Identities=21%  Similarity=0.398  Sum_probs=38.0

Q ss_pred             CCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015614          136 TPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA  185 (403)
Q Consensus       136 tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~  185 (403)
                      |-+.+...+++.++.+.|||||++|+.  +.++...+-....+.++|+||
T Consensus        38 T~Dv~atv~Qi~~L~~aGceiVRvav~--~~~~a~al~~I~~~~~iPlvA   85 (360)
T PRK00366         38 TADVEATVAQIKRLARAGCEIVRVAVP--DMEAAAALPEIKKQLPVPLVA   85 (360)
T ss_pred             chhHHHHHHHHHHHHHcCCCEEEEccC--CHHHHHhHHHHHHcCCCCEEE
Confidence            435567888889999999999999998  666766666666667888876

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=85.30  E-value=2.8  Score=37.44  Aligned_cols=37  Identities=30%  Similarity=0.449  Sum_probs=28.2

Q ss_pred             CCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++||+++|+|.++ .++.++.-|.+.|+.|+++...
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~   69 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK   69 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC
Confidence            568899999999876 6999999999999999888653

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14030 glutamate dehydrogenase; Provisional

Probab=85.26  E-value=2.9  Score=43.34  Aligned_cols=51  Identities=20%  Similarity=0.341  Sum_probs=42.2

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEE
Q 015614          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF  397 (403)
Q Consensus       338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~  397 (403)
                      -+.|...+++..+...         +..++|++++|=|.|.+|..++..|.++|++|..+
T Consensus       207 Tg~Gv~~~~~~~~~~~---------g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVav  257 (445)
T PRK14030        207 TGFGALYFVHQMLETK---------GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTI  257 (445)
T ss_pred             cHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            4678888888877632         25688999999999999999999999999976653

>PRK09414 glutamate dehydrogenase; Provisional

Probab=85.21  E-value=2.7  Score=43.65  Aligned_cols=52  Identities=25%  Similarity=0.353  Sum_probs=42.0

Q ss_pred             ccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEE
Q 015614          337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF  397 (403)
Q Consensus       337 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~  397 (403)
                      .-+.|...+++..+.+.         +..++|++++|.|-|.+|+.++..|.+.|++|+.+
T Consensus       210 aTg~Gv~~~~~~~~~~~---------~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVav  261 (445)
T PRK09414        210 ATGYGLVYFAEEMLKAR---------GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTC  261 (445)
T ss_pred             cccHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            44568888888776632         25678999999999999999999999999976654

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=85.09  E-value=1.2  Score=44.25  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHH-CCC-eEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~-~g~-~i~v~nR~~~k  403 (403)
                      .+.+++|+|+||.+..++..++. .|. +|+++.++++|
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k  201 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEK  201 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhH
Confidence            47899999999999988777775 565 89888887654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=84.98  E-value=8.8  Score=38.81  Aligned_cols=76  Identities=18%  Similarity=0.166  Sum_probs=45.7

Q ss_pred             HHHHHhcCCCEEEEEecC-------C---CCCC-C-------------chHHHHHHhcCCCcEEEEeecC-CCCCCC---
Q 015614           29 MYQAKAEGADVVEIRLDC-------I---NNFQ-P-------------GKDLEIILTKKPLPVLIVYRPK-WAGGLY---   80 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~-------l---~~~~-~-------------~~~l~~l~~~~~~PiI~T~R~~-~eGG~~---   80 (403)
                      +..+.+.|.|.|||..-+       |   .+.. +             .+.+..+|+...-.+++.+|-. +++..+   
T Consensus       150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~  229 (361)
T cd04747         150 AADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTAR  229 (361)
T ss_pred             HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccC
Confidence            445567899999998765       1   1111 1             1455667766543444555633 221111   


Q ss_pred             -CCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           81 -EGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        81 -~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                       ..+.++-.++++.+.+.|+|||++
T Consensus       230 ~g~~~~e~~~~~~~l~~~gvd~i~v  254 (361)
T cd04747         230 LADTPDELEALLAPLVDAGVDIFHC  254 (361)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence             135567778888888889999776

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=84.98  E-value=1.1  Score=49.05  Aligned_cols=38  Identities=37%  Similarity=0.600  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++.+|+++|.|+ ||.|++++..|.+.|++|.+++|+.
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~  448 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNL  448 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3467899999995 8899999999999999999999874

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=84.96  E-value=1.7  Score=43.01  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+.||++.|+|-|..||+++.-++..|++|..++|+.
T Consensus       142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~  178 (311)
T PRK08410        142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG  178 (311)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence            4679999999999999999999999999999999853

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=84.90  E-value=1.6  Score=44.50  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++++|.|+ |+.|+.++..|.+.|.+|+++.|+.
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            45789999996 8889999999999999999999875

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=84.84  E-value=6.1  Score=38.54  Aligned_cols=84  Identities=23%  Similarity=0.303  Sum_probs=57.4

Q ss_pred             EEEecccCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCC--------CC---chHHHHHHhcCCCcEEEEeecCCCCCC
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAE--GADVVEIRLDCINNF--------QP---GKDLEIILTKKPLPVLIVYRPKWAGGL   79 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~--~~D~vElRlD~l~~~--------~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~   79 (403)
                      +.++|.+.+.+++..-++...+.  ++|.|||=+=+=...        ++   .+.+..+++..++|+.+-+|.      
T Consensus        93 l~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~------  166 (300)
T TIGR01037        93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP------  166 (300)
T ss_pred             EEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC------
Confidence            57999999999998777776443  499999976542210        11   234455566668898887763      


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614           80 YEGDEHKRLEALHLAEDLGADYVDFE  105 (403)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g~~yvDiE  105 (403)
                         +.++-.++.+.+.+.|+++|.+-
T Consensus       167 ---~~~~~~~~a~~l~~~G~d~i~v~  189 (300)
T TIGR01037       167 ---NVTDITEIAKAAEEAGADGLTLI  189 (300)
T ss_pred             ---ChhhHHHHHHHHHHcCCCEEEEE
Confidence               12344567777888999998874

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK06487 glycerate dehydrogenase; Provisional

Probab=84.80  E-value=1.5  Score=43.46  Aligned_cols=36  Identities=36%  Similarity=0.444  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+.||++.|+|-|..||+++..|+..|++|..++|.
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence            467999999999999999999999999999988875

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=84.77  E-value=17  Score=36.31  Aligned_cols=108  Identities=6%  Similarity=0.061  Sum_probs=69.2

Q ss_pred             EeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEE---------ecc--cc----chHHHHHHhccCCCcEEEEecc
Q 015614           70 VYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDF---------ELK--VA----SNILGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        70 T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDi---------El~--~~----~~~~~~l~~~~~~~~kiI~S~H  131 (403)
                      |+|   +|++   +..+.++..++.+.+.+.|+++|.+         ...  .+    .+.++.+... .+++++.+=..
T Consensus        10 TLR---DG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll~   85 (337)
T PRK08195         10 TLR---DGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALLL   85 (337)
T ss_pred             CCC---CcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEec
Confidence            555   6665   3457799999999999999999877         221  11    2334444332 34566654221


Q ss_pred             CCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEE
Q 015614          132 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS  187 (403)
Q Consensus       132 ~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~  187 (403)
                           |..... +-++++.+.|.|++++++..+..+......+...+....+.+..
T Consensus        86 -----pg~~~~-~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l  135 (337)
T PRK08195         86 -----PGIGTV-DDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFL  135 (337)
T ss_pred             -----cCcccH-HHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEE
Confidence                 211122 34688888999999999988777777777777766665554433

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=84.75  E-value=15  Score=34.71  Aligned_cols=82  Identities=13%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             EeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEeccccc-------h---HHHHHHhccCCCcEEEEeccCCCCC
Q 015614           70 VYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVAS-------N---ILGKQYSSHQSGTRFIVSCNLDCET  136 (403)
Q Consensus        70 T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~-------~---~~~~l~~~~~~~~kiI~S~H~f~~t  136 (403)
                      |+|   +|++   +..+.++..++++.+.+.|+++|++=.-.+.       +   .++.+... .++.++.+  +.   +
T Consensus         4 tlR---DG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~-~~~~~~~~--l~---~   74 (265)
T cd03174           4 TLR---DGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKL-VPNVKLQA--LV---R   74 (265)
T ss_pred             CCC---CcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhc-cCCcEEEE--Ec---c
Confidence            566   4554   3457799999999999999999777543322       2   22333221 12344422  11   1


Q ss_pred             CCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015614          137 PSEEDLGYLVSRMQATGADIIKLVFSVN  164 (403)
Q Consensus       137 p~~~~l~~~~~~~~~~gadivKia~~~~  164 (403)
                      ..    .+.++++.+.|.|.+.+.....
T Consensus        75 ~~----~~~i~~a~~~g~~~i~i~~~~s   98 (265)
T cd03174          75 NR----EKGIERALEAGVDEVRIFDSAS   98 (265)
T ss_pred             Cc----hhhHHHHHhCCcCEEEEEEecC
Confidence            11    5567888888999999998877

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=84.66  E-value=6.6  Score=39.35  Aligned_cols=75  Identities=21%  Similarity=0.245  Sum_probs=50.3

Q ss_pred             HHHHHhcCCCEEEEEe--cCC-----CCC-C---C-------------chHHHHHHhcCCCcEEEEeecCC----CCCCC
Q 015614           29 MYQAKAEGADVVEIRL--DCI-----NNF-Q---P-------------GKDLEIILTKKPLPVLIVYRPKW----AGGLY   80 (403)
Q Consensus        29 ~~~~~~~~~D~vElRl--D~l-----~~~-~---~-------------~~~l~~l~~~~~~PiI~T~R~~~----eGG~~   80 (403)
                      +..+.+.|.|.|||-.  -||     .+. +   +             .+.+..+|+....++++.+|-..    +||. 
T Consensus       147 A~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~-  225 (343)
T cd04734         147 ARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGL-  225 (343)
T ss_pred             HHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCC-
Confidence            4455678999999998  332     211 1   1             14555667777778888888442    2332 


Q ss_pred             CCCHHHHHHHHHHHHHcC-CcEEEEec
Q 015614           81 EGDEHKRLEALHLAEDLG-ADYVDFEL  106 (403)
Q Consensus        81 ~~~~~~~~~ll~~~~~~g-~~yvDiEl  106 (403)
                        +.++-+++.+.+.+.| +|||+|--
T Consensus       226 --~~~e~~~~~~~l~~~G~vd~i~vs~  250 (343)
T cd04734         226 --SPDEALEIAARLAAEGLIDYVNVSA  250 (343)
T ss_pred             --CHHHHHHHHHHHHhcCCCCEEEeCC
Confidence              4567788888888998 89998843

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=84.66  E-value=16  Score=35.03  Aligned_cols=104  Identities=7%  Similarity=-0.003  Sum_probs=64.9

Q ss_pred             EEeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEecc-----------c----cchHHHHHHhccCCCcEEEEec
Q 015614           69 IVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELK-----------V----ASNILGKQYSSHQSGTRFIVSC  130 (403)
Q Consensus        69 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDiEl~-----------~----~~~~~~~l~~~~~~~~kiI~S~  130 (403)
                      .|+|   +|++   +..+.++..++++...+.|+++|++=..           .    +.+.++.+... .+++|+.+-.
T Consensus         6 ~TlR---DG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~   81 (263)
T cd07943           6 VTLR---DGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLL   81 (263)
T ss_pred             CCCC---cCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEe
Confidence            3556   5665   3457799999999999999999777310           1    12334445322 2467764332


Q ss_pred             cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCC
Q 015614          131 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVP  182 (403)
Q Consensus       131 H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p  182 (403)
                      +.  ..+.    .+-++++.+.|.|++.+....++........+.....+..
T Consensus        82 ~~--~~~~----~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~  127 (263)
T cd07943          82 LP--GIGT----VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMD  127 (263)
T ss_pred             cC--CccC----HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCe
Confidence            21  1111    1336777788999999999888776666666665555543

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>PLN03139 formate dehydrogenase; Provisional

Probab=84.55  E-value=1.8  Score=44.22  Aligned_cols=38  Identities=26%  Similarity=0.239  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|..++|+.
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~  232 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK  232 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCC
Confidence            35789999999999999999999999999999999864

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=84.51  E-value=1  Score=43.93  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=28.6

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~  401 (403)
                      ++++++|+|+|+.|..++..++..|+ .|.+++++.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~  179 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP  179 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence            36789999999999999988888999 577766553

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=84.41  E-value=4.4  Score=40.19  Aligned_cols=50  Identities=18%  Similarity=0.377  Sum_probs=38.8

Q ss_pred             CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015614          134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA  185 (403)
Q Consensus       134 ~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~  185 (403)
                      ..|-+.+.-.+++.++.+.|||||++++.  +.++...+-+...+.+.|+|+
T Consensus        30 T~T~Dv~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVa   79 (361)
T COG0821          30 TDTADVEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVA   79 (361)
T ss_pred             CCcccHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEE
Confidence            34445566788888999999999999987  667776776776777889875

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=84.31  E-value=1  Score=44.17  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=31.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCe-EEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~-i~v~nR~~~  402 (403)
                      .+.+++|+|+|+.+.+++..++..|++ |+++.++.+
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~  199 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE  199 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            478999999999999999989999996 988887643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02686 cinnamoyl-CoA reductase

Probab=84.26  E-value=1.5  Score=44.06  Aligned_cols=38  Identities=18%  Similarity=0.091  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...++|+++|.|+ |+.|++++..|.+.|++|+++.|+.
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~   87 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQ   87 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3456899999996 8999999999999999988877763

>PRK05855 short chain dehydrogenase; Validated

Probab=84.25  E-value=1.1  Score=47.04  Aligned_cols=37  Identities=43%  Similarity=0.706  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...+++++|.|+ ||.|++++..|.+.|++|.++.|+.
T Consensus       312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~  349 (582)
T PRK05855        312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDE  349 (582)
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            456789999995 8999999999999999999999974

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=84.25  E-value=34  Score=31.54  Aligned_cols=84  Identities=23%  Similarity=0.258  Sum_probs=50.3

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEE---EEecCCCCCCCchHHHHHH--hcCCCcEEEEeecCCCCCCCCCCHHHH
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVE---IRLDCINNFQPGKDLEIIL--TKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vE---lRlD~l~~~~~~~~l~~l~--~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      +..|..+-+-..++....   ..|+|.+-   ++.+.+.....  +...+.  ...+.|+++.+...        +.++.
T Consensus         3 ~~aPm~~~~~~~fR~l~~---~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~qi~g~--------~~~~~   69 (231)
T cd02801           3 ILAPMVGVTDLPFRLLCR---RYGADLVYTEMISAKALLRGNR--KRLRLLTRNPEERPLIVQLGGS--------DPETL   69 (231)
T ss_pred             EeCCCCCCcCHHHHHHHH---HHCCCEEEecCEEEhhhhhcCH--HHHHhhccCccCCCEEEEEcCC--------CHHHH
Confidence            344555555455554443   35688876   56665543221  222222  23478999888732        45667


Q ss_pred             HHHHHHHHHcCCcEEEEecccc
Q 015614           88 LEALHLAEDLGADYVDFELKVA  109 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~~~  109 (403)
                      .+..+.+.+.|++.|||-...+
T Consensus        70 ~~aa~~~~~aG~d~ieln~g~p   91 (231)
T cd02801          70 AEAAKIVEELGADGIDLNMGCP   91 (231)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCC
Confidence            7777788888999999976553

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=84.24  E-value=19  Score=36.17  Aligned_cols=106  Identities=20%  Similarity=0.176  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCC---chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      .++...++.++..|+++|-+|.=-+.+.+.   ...+..+-+..+.++|+.-|                  ...+.+.++
T Consensus       157 ~~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~------------------vdlAl~~~a  218 (347)
T PRK02615        157 ENLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGALFIVNDR------------------VDIALAVDA  218 (347)
T ss_pred             hhHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCh------------------HHHHHHcCC
Confidence            456667888889999999999444432111   12333444455788887733                  234566788


Q ss_pred             cEEEEecccc-chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          100 DYVDFELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       100 ~yvDiEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.|=+..... ....+++   ..++..|-+|.|+      .++    ..++.+.|||++.+
T Consensus       219 DGVHLgq~dl~~~~aR~l---lg~~~iIG~S~Hs------~~e----~~~A~~~GaDYI~l  266 (347)
T PRK02615        219 DGVHLGQEDLPLAVARQL---LGPEKIIGRSTTN------PEE----MAKAIAEGADYIGV  266 (347)
T ss_pred             CEEEeChhhcCHHHHHHh---cCCCCEEEEecCC------HHH----HHHHHHcCCCEEEE
Confidence            8887754322 1222222   2234456678885      233    34555679999987

>PTZ00188 adrenodoxin reductase; Provisional

Probab=84.02  E-value=1.7  Score=45.81  Aligned_cols=35  Identities=17%  Similarity=0.009  Sum_probs=30.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHH-HCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~-~~g~~i~v~nR~~  401 (403)
                      ..++|+|+|+|.+|-.+|..|. +.|++|+|+.|.+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p   73 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP   73 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            4679999999999999988764 6788999999875

>PRK06932 glycerate dehydrogenase; Provisional

Probab=83.99  E-value=1.8  Score=42.91  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+.||++.|+|-|..||+++..|+.+|++|..++|..
T Consensus       144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~  180 (314)
T PRK06932        144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG  180 (314)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence            4679999999999999999999999999998888753

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=83.96  E-value=49  Score=33.09  Aligned_cols=196  Identities=16%  Similarity=0.201  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEE---------ec-CCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           23 EQVLSNMYQAKAEGADVVEIR---------LD-CINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElR---------lD-~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      ++.+.-++...+.|+|.||+-         ++ -+...++.+.++.+++.. +.++..-+++.    ..  .    .+-+
T Consensus        25 ~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg----~~--~----~~dl   94 (337)
T PRK08195         25 EQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPG----IG--T----VDDL   94 (337)
T ss_pred             HHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccC----cc--c----HHHH
Confidence            333443444456799999993         22 122223345666665443 34444434421    11  1    2336


Q ss_pred             HHHHHcCCcEEEEeccccc-hHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015614           92 HLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DIT  167 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~~~  167 (403)
                      +.+.+.|++.|-|-....+ +...+.. ..+..+.++.++.-+. ...+.+++.++.+++.++|+|.+-++=+.-  +++
T Consensus        95 ~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~  173 (337)
T PRK08195         95 KMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPE  173 (337)
T ss_pred             HHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHH
Confidence            8888999999877654433 1222222 3344456666654432 223568899999999999999987775554  588


Q ss_pred             HHHHHHHHhccC---CCCEEEE-EcCcc--chhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          168 EIARIFQLLSHC---QVPIIAY-SVGER--GLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       168 D~~~ll~~~~~~---~~p~i~~-~MG~~--G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      |+.++.+.+.+.   +.|+ .+ +=-..  +...-+..-.-|....=+++.. +...|+++++++...++
T Consensus       174 ~v~~~v~~l~~~l~~~i~i-g~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~  242 (337)
T PRK08195        174 DVRDRVRALRAALKPDTQV-GFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLD  242 (337)
T ss_pred             HHHHHHHHHHHhcCCCCeE-EEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccCccHHHHHHHHH
Confidence            888888776532   2332 22 10111  1111121112233333333332 34678888877665544

>PLN02602 lactate dehydrogenase

Probab=83.74  E-value=1.8  Score=43.65  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCC--eEEEEecCCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFG  402 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~--~i~v~nR~~~  402 (403)
                      +++.|+|+|.+|.+++|.|...|.  +|.+++++.+
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~   73 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD   73 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence            699999999999999999998885  7999998764

>TIGR01496 DHPS dihydropteroate synthase

Probab=83.67  E-value=5.8  Score=38.14  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=59.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE--ecccc-------chH---HHHHHhccCCCcEEEEeccCCCCCCCHhH
Q 015614           74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDF--ELKVA-------SNI---LGKQYSSHQSGTRFIVSCNLDCETPSEED  141 (403)
Q Consensus        74 ~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi--El~~~-------~~~---~~~l~~~~~~~~kiI~S~H~f~~tp~~~~  141 (403)
                      =.+||.+.. .++-.+..+..++.|+++|||  +-..+       ++.   +..++...+..+++.+|.|.+    +.+.
T Consensus        13 F~dg~~~~~-~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~----~~~v   87 (257)
T TIGR01496        13 FSDGGRFLS-VDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTY----RAEV   87 (257)
T ss_pred             CCCCCCCCC-HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCC----CHHH
Confidence            367888743 444555566667899999999  32221       111   222222212344677898853    3333


Q ss_pred             HHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcC
Q 015614          142 LGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG  189 (403)
Q Consensus       142 l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG  189 (403)
                      +    +.+.+.|+|++-=+..-+ .+   +++.+..+.+.++|+|.+.
T Consensus        88 i----~~al~~G~~iINsis~~~-~~---~~~~l~~~~~~~vV~m~~~  127 (257)
T TIGR01496        88 A----RAALEAGADIINDVSGGQ-DP---AMLEVAAEYGVPLVLMHMR  127 (257)
T ss_pred             H----HHHHHcCCCEEEECCCCC-Cc---hhHHHHHHcCCcEEEEeCC
Confidence            4    334445999877654433 23   3444455678899998774

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=83.62  E-value=71  Score=34.65  Aligned_cols=206  Identities=14%  Similarity=0.086  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614           23 EQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLA   94 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~   94 (403)
                      ++++.-+...-+.|...+|.=    +|-   +...+|.+.+..+|+.. +.|+-.=+|..+==|..+.+++--..+++.+
T Consensus        26 ~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a  105 (596)
T PRK14042         26 EDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLA  105 (596)
T ss_pred             HHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHH
Confidence            444444444445688888863    332   11225567788888665 6788777887666666666777777789999


Q ss_pred             HHcCCcEEEEe--ccccchHHHHHHhccCCCcEEEEe--ccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015614           95 EDLGADYVDFE--LKVASNILGKQYSSHQSGTRFIVS--CNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DI  166 (403)
Q Consensus        95 ~~~g~~yvDiE--l~~~~~~~~~l~~~~~~~~kiI~S--~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~~  166 (403)
                      .+.|.+.+=|=  ++..+.....+...++.+..+.++  |-   ..|  +.+.+.++.+++.+.|||.+=|+=|+-  ++
T Consensus       106 ~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt---~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P  182 (596)
T PRK14042        106 VNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYT---TSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTP  182 (596)
T ss_pred             HHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEec---CCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCH
Confidence            99998887662  222233333333233344445444  42   233  457899999999999999988887774  57


Q ss_pred             hHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhhh
Q 015614          167 TEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (403)
Q Consensus       167 ~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~~  231 (403)
                      .++.++.+.+.+. +.|+-.=  ++--.|..+-+..-.-|....-+++.. +..+||++.+++...++.
T Consensus       183 ~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~  251 (596)
T PRK14042        183 TVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTD  251 (596)
T ss_pred             HHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHh
Confidence            8888888776543 5554211  122223333333333344444344432 245799999888776653

>PRK07201 short chain dehydrogenase; Provisional

Probab=83.59  E-value=1.2  Score=48.16  Aligned_cols=38  Identities=34%  Similarity=0.578  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~  406 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGE  406 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            456899999995 88999999999999999999998753

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=83.54  E-value=42  Score=31.96  Aligned_cols=121  Identities=16%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             HHHHHHhcCC-CcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCC
Q 015614           55 DLEIILTKKP-LPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLD  133 (403)
Q Consensus        55 ~l~~l~~~~~-~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f  133 (403)
                      .++.+++..+ .|+|+=.-    .|... +.+.-.+..++.++.|++.|-||-..  +..+.+...+....-|| -+-+ 
T Consensus        63 ~~~~I~r~~~~~pviaD~~----~G~g~-~~~~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~~a~i~Vi-aRtd-  133 (240)
T cd06556          63 HVRAVRRGAPLALIVADLP----FGAYG-APTAAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLTAAAVPVI-AHTG-  133 (240)
T ss_pred             HHHHHHhhCCCCCEEEeCC----CCCCc-CHHHHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHHHcCCeEE-EEeC-
Confidence            3344555554 69997653    45443 44666777888899999999999753  22222322222334333 2222 


Q ss_pred             CCCC-----------------CHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCc
Q 015614          134 CETP-----------------SEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE  190 (403)
Q Consensus       134 ~~tp-----------------~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~  190 (403)
                       -+|                 ..+++.+......+.|||.+=+=..  +.++..+   +....+.|++++++|.
T Consensus       134 -~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~~---i~~~~~~P~~~~gag~  201 (240)
T cd06556         134 -LTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAKQ---ITEALAIPLAGIGAGS  201 (240)
T ss_pred             -CchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHH---HHHhCCCCEEEEecCc
Confidence             222                 2345555566667889998877533  5555544   4445678999988886

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=83.36  E-value=1.7  Score=45.44  Aligned_cols=37  Identities=30%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...+++|.|+|+|.++.++++-|.+.|+.|+|+.|.+
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~  156 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA  156 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence            3457999999999999999999999999999988753

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=83.36  E-value=46  Score=32.34  Aligned_cols=40  Identities=15%  Similarity=0.146  Sum_probs=28.7

Q ss_pred             CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC--CcEEEEeccccc
Q 015614           63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG--ADYVDFELKVAS  110 (403)
Q Consensus        63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g--~~yvDiEl~~~~  110 (403)
                      .+.|+++.+..        .+.+++.+..+.+.+.+  +++||+-+..+.
T Consensus        89 ~~~pl~~qi~g--------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~  130 (300)
T TIGR01037        89 FPTPLIASVYG--------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPH  130 (300)
T ss_pred             CCCcEEEEeec--------CCHHHHHHHHHHHHhccCccCEEEEECCCCC
Confidence            35799999862        24567777777776653  899999887654

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=83.25  E-value=82  Score=36.95  Aligned_cols=208  Identities=13%  Similarity=0.083  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHhc--CCCEEEEEe----cC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614           23 EQVLSNMYQAKAE--GADVVEIRL----DC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (403)
Q Consensus        23 ~e~~~~~~~~~~~--~~D~vElRl----D~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (403)
                      ++++.-++..-..  |.+.+|.=-    |.   +...++.+.+..+|+.. +.|+-.-+|..+==|..+.++.-..++++
T Consensus       555 ~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~  634 (1146)
T PRK12999        555 KDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVR  634 (1146)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHH
Confidence            3333333333345  899999853    21   11224567788888755 67777778865554544556666667899


Q ss_pred             HHHHcCCcEEEEeccccc--hHHHHHHhccCCC--cEEEEecc----CCCCCC-CHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614           93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSG--TRFIVSCN----LDCETP-SEEDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus        93 ~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~--~kiI~S~H----~f~~tp-~~~~l~~~~~~~~~~gadivKia~~~  163 (403)
                      .+.+.|++.+-|=....+  .....+...+..+  ..+-+||-    |...+. +.+.+.++.+++.+.|||++-|+=|+
T Consensus       635 ~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~  714 (1146)
T PRK12999        635 EAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMA  714 (1146)
T ss_pred             HHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            999999999887533332  1111111122222  44666665    333332 45678899999999999999888777


Q ss_pred             C--CHhHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          164 N--DITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       164 ~--~~~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      -  ++.+...+.+.+.+. +.|+-.=  ++--.+..+-+..-..|....=+++.. +--.||++++++...++
T Consensus       715 G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~  787 (1146)
T PRK12999        715 GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALE  787 (1146)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHH
Confidence            4  577887777765432 4443211  111122222332223343333333322 23467777777665554

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=83.22  E-value=12  Score=37.67  Aligned_cols=80  Identities=16%  Similarity=0.048  Sum_probs=50.1

Q ss_pred             HHHHHHHhcCCCEEEEEecC-------CCCC-C---C-------------chHHHHHHhcCCCcEEEEeecCC-CCCCCC
Q 015614           27 SNMYQAKAEGADVVEIRLDC-------INNF-Q---P-------------GKDLEIILTKKPLPVLIVYRPKW-AGGLYE   81 (403)
Q Consensus        27 ~~~~~~~~~~~D~vElRlD~-------l~~~-~---~-------------~~~l~~l~~~~~~PiI~T~R~~~-eGG~~~   81 (403)
                      ..++.+.+.|.|.|||---.       |.+. +   +             .+.++.+|+....++.+-+|-.. |...--
T Consensus       141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g  220 (353)
T cd02930         141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGG  220 (353)
T ss_pred             HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCC
Confidence            33445567899999997632       1111 1   0             14566677766667777777543 211111


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           82 GDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        82 ~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      .+.++-+++.+.+.+.|+|||+|-.
T Consensus       221 ~~~~e~~~i~~~Le~~G~d~i~vs~  245 (353)
T cd02930         221 STWEEVVALAKALEAAGADILNTGI  245 (353)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCC
Confidence            2556778888898899999999854

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=83.22  E-value=40  Score=31.52  Aligned_cols=150  Identities=19%  Similarity=0.200  Sum_probs=81.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC----CCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNF----QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLA   94 (403)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~   94 (403)
                      ..++.|....+   .+.|+|.+-+| |+=...    .....++.+.+....|+++.      ||-...  +    -.+.+
T Consensus        31 ~~~~~e~a~~~---~~~G~~~l~i~-dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~------GGi~~~--~----~~~~~   94 (241)
T PRK13585         31 YGDPVEVAKRW---VDAGAETLHLV-DLDGAFEGERKNAEAIEKIIEAVGVPVQLG------GGIRSA--E----DAASL   94 (241)
T ss_pred             CCCHHHHHHHH---HHcCCCEEEEE-echhhhcCCcccHHHHHHHHHHcCCcEEEc------CCcCCH--H----HHHHH
Confidence            34666665544   56799999888 543211    22345666767778999973      554322  1    22445


Q ss_pred             HHcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEec--cC-------CCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614           95 EDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSC--NL-------DCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus        95 ~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~--H~-------f~~tp~~~~l~~~~~~~~~~gadivKia~~~  163 (403)
                      ++.|++.|.+--....  +.+.++... -+..++++|.  ++       +.... ..+..+..+++.+.|++-+=+.-..
T Consensus        95 ~~~Ga~~v~iGs~~~~~~~~~~~i~~~-~g~~~i~~sid~~~~~v~~~g~~~~~-~~~~~~~~~~~~~~G~~~i~~~~~~  172 (241)
T PRK13585         95 LDLGVDRVILGTAAVENPEIVRELSEE-FGSERVMVSLDAKDGEVVIKGWTEKT-GYTPVEAAKRFEELGAGSILFTNVD  172 (241)
T ss_pred             HHcCCCEEEEChHHhhChHHHHHHHHH-hCCCcEEEEEEeeCCEEEECCCcccC-CCCHHHHHHHHHHcCCCEEEEEeec
Confidence            5689999988654432  344444422 1344676553  21       11111 1245666777778899866443221


Q ss_pred             C----CHhHHHHHHHHhccCCCCEEEE
Q 015614          164 N----DITEIARIFQLLSHCQVPIIAY  186 (403)
Q Consensus       164 ~----~~~D~~~ll~~~~~~~~p~i~~  186 (403)
                      .    +..|...+-++....+.|+++-
T Consensus       173 ~~g~~~g~~~~~i~~i~~~~~iPvia~  199 (241)
T PRK13585        173 VEGLLEGVNTEPVKELVDSVDIPVIAS  199 (241)
T ss_pred             CCCCcCCCCHHHHHHHHHhCCCCEEEe
Confidence            1    1223333444444456787654

>PLN02256 arogenate dehydrogenase

Probab=83.16  E-value=2  Score=42.39  Aligned_cols=35  Identities=20%  Similarity=0.113  Sum_probs=31.6

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ++.++.|+|.|..|.+++.+|.+.|.+|++++|+.
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            46789999999999999999999998999999874

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=83.01  E-value=15  Score=34.26  Aligned_cols=199  Identities=12%  Similarity=0.106  Sum_probs=110.3

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHH
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      ..|++=+-|-..+++++...++++... +|.||.---++...- .+.++.+|+.. +.+++.-..+- +.|..       
T Consensus         2 ~~p~LQvALD~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG-~~aV~~lr~~~pd~~IvAD~Kt~-D~G~~-------   71 (217)
T COG0269           2 SPPLLQVALDLLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEG-MRAVRALRELFPDKIIVADLKTA-DAGAI-------   71 (217)
T ss_pred             CCcceEeeecccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhh-HHHHHHHHHHCCCCeEEeeeeec-chhHH-------
Confidence            357788899999999999999987665 999998666555322 25677888765 66677666654 33321       


Q ss_pred             HHHHHHHHHcCCcEEEEeccccchHHHHH-HhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015614           88 LEALHLAEDLGADYVDFELKVASNILGKQ-YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI  166 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l-~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~  166 (403)
                        ..+++++.|+|++-|=--.+..-+... ..+++.+..+.+-.-+   .+++   .+..+...++|.|++=+=..-   
T Consensus        72 --e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~---~~~~---~~~~~~l~~~gvd~~~~H~g~---  140 (217)
T COG0269          72 --EARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIG---VWDP---EQRAKWLKELGVDQVILHRGR---  140 (217)
T ss_pred             --HHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeec---CCCH---HHHHHHHHHhCCCEEEEEecc---
Confidence              236788999999887544443322222 2334445555443332   2223   333344444676655332211   


Q ss_pred             hHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhccccccceEEeeecc
Q 015614          167 TEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISK  246 (403)
Q Consensus       167 ~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~~~~liG~  246 (403)
                       |...   .    +..   -+-.....+-++...  |..+        +--|-++.+++..+..   +.   ....++|.
T Consensus       141 -D~q~---~----G~~---~~~~~l~~ik~~~~~--g~~v--------AVaGGI~~~~i~~~~~---~~---~~ivIvGr  193 (217)
T COG0269         141 -DAQA---A----GKS---WGEDDLEKIKKLSDL--GAKV--------AVAGGITPEDIPLFKG---IG---ADIVIVGR  193 (217)
T ss_pred             -cHhh---c----CCC---ccHHHHHHHHHhhcc--CceE--------EEecCCCHHHHHHHhc---CC---CCEEEECc
Confidence             1100   0    000   000111222232221  1101        3345588888875543   22   35668899


Q ss_pred             CCcccCCHH
Q 015614          247 PVGHSKGPI  255 (403)
Q Consensus       247 pi~hS~SP~  255 (403)
                      .|.+|..|.
T Consensus       194 aIt~a~dp~  202 (217)
T COG0269         194 AITGAKDPA  202 (217)
T ss_pred             hhcCCCCHH
Confidence            999999997

>PTZ00367 squalene epoxidase; Provisional

Probab=83.00  E-value=1.5  Score=47.07  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=31.2

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...++|+|+|-+|.+++.+|++.|.+|.|+.|+.
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            3579999999999999999999999999999875

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli

Probab=82.94  E-value=4.6  Score=40.45  Aligned_cols=49  Identities=16%  Similarity=0.409  Sum_probs=33.2

Q ss_pred             CCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEE
Q 015614          135 ETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIA  185 (403)
Q Consensus       135 ~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~-----~~~p~i~  185 (403)
                      .|-+.+...+++.++.+.|||||++|+.  +.++...+-+...+     .++|++|
T Consensus        26 ~t~Dv~atv~QI~~L~~aGceivRvavp--~~~~a~al~~I~~~l~~~g~~iPlVA   79 (359)
T PF04551_consen   26 DTRDVEATVAQIKRLEEAGCEIVRVAVP--DMEAAEALKEIKKRLRALGSPIPLVA   79 (359)
T ss_dssp             -TT-HHHHHHHHHHHHHCT-SEEEEEE---SHHHHHHHHHHHHHHHCTT-SS-EEE
T ss_pred             CcccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHHHHhhccCCCCCCeee
Confidence            3445677888899999999999999998  66666666555554     5788876

It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.85  E-value=2  Score=44.36  Aligned_cols=36  Identities=42%  Similarity=0.642  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      +.++++++|.|+ ||.+++++..|.+.|++|.+++|.
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~  243 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP  243 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            356899999997 999999999999999998888774

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=82.78  E-value=10  Score=38.51  Aligned_cols=78  Identities=23%  Similarity=0.119  Sum_probs=47.0

Q ss_pred             HHHHHhcCCCEEEEEe---cCC--------CCC-CC-------------chHHHHHHhcCCCcEEEEeecCC--------
Q 015614           29 MYQAKAEGADVVEIRL---DCI--------NNF-QP-------------GKDLEIILTKKPLPVLIVYRPKW--------   75 (403)
Q Consensus        29 ~~~~~~~~~D~vElRl---D~l--------~~~-~~-------------~~~l~~l~~~~~~PiI~T~R~~~--------   75 (403)
                      ++.+.+.|.|.|||-.   -||        .+. ++             .+.++.+|+...-.+++.+|-..        
T Consensus       156 A~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~  235 (382)
T cd02931         156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLR  235 (382)
T ss_pred             HHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccc
Confidence            3444678999999997   443        111 11             14556666666444455555221        


Q ss_pred             -------CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           76 -------AGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        76 -------eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                             |...--.+.++..++++.+.+.|+|||+|-.
T Consensus       236 ~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~  273 (382)
T cd02931         236 QGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA  273 (382)
T ss_pred             cccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence                   1111112457788899999889999999854

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=82.70  E-value=1.4  Score=43.71  Aligned_cols=36  Identities=42%  Similarity=0.621  Sum_probs=30.7

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++++|+|+|+.+.+++..++..|++|+++.++.+
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~  201 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE  201 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence            478999999999999999988889998887777643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=82.68  E-value=45  Score=31.76  Aligned_cols=191  Identities=16%  Similarity=0.211  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614           22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD  100 (403)
Q Consensus        22 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~  100 (403)
                      .++.+.-++...+.|+|.||+-+=.+.+ ++.+.+..+++.. +..+..-.|..         .    +-++.+.+.|++
T Consensus        19 ~~~k~~i~~~L~~~Gv~~iE~g~p~~~~-~~~e~~~~l~~~~~~~~~~~~~r~~---------~----~~v~~a~~~g~~   84 (259)
T cd07939          19 REEKLAIARALDEAGVDEIEVGIPAMGE-EEREAIRAIVALGLPARLIVWCRAV---------K----EDIEAALRCGVT   84 (259)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHHHHHhcCCCCEEEEeccCC---------H----HHHHHHHhCCcC
Confidence            3444444445556799999996422221 1124555665432 33333333321         1    124667788999


Q ss_pred             EEEEeccccchH------------H---HHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015614          101 YVDFELKVASNI------------L---GKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (403)
Q Consensus       101 yvDiEl~~~~~~------------~---~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~  164 (403)
                      +|-+-....+..            +   .+.. ..+..+..+..+.=+...+ +.+++.++++++.+.|+|.+-++=+.-
T Consensus        85 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l~DT~G  163 (259)
T cd07939          85 AVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRA-DPDFLIEFAEVAQEAGADRLRFADTVG  163 (259)
T ss_pred             EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCC-CHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence            888865443321            1   1122 2344455665555443222 467899999999999999887775553


Q ss_pred             --CHhHHHHHHHHhcc-CCCCEEE-----EEcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          165 --DITEIARIFQLLSH-CQVPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       165 --~~~D~~~ll~~~~~-~~~p~i~-----~~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                        ++.++..+...+.+ .+.|+-.     ++||..--+.=+   .-|..+.=+++.+ +-..|+++.+++...++
T Consensus       164 ~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi---~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~  235 (259)
T cd07939         164 ILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAV---RAGATHVSVTVNGLGERAGNAALEEVVMALK  235 (259)
T ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH---HhCCCEEEEecccccccccCcCHHHHHHHHH
Confidence              57888888776543 2333211     112221111112   1233232233322 24578888877766554

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=82.56  E-value=25  Score=37.12  Aligned_cols=134  Identities=22%  Similarity=0.251  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614           24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD  100 (403)
Q Consensus        24 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~  100 (403)
                      ++...++.++..|+++|-||.=.+......+....++   +..+.++|+.-|                  .+.+.+.|++
T Consensus       308 ~~~~~l~~~l~~Gv~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind~------------------~~lA~~~~ad  369 (502)
T PLN02898        308 STVDAVRAAIEGGATIVQLREKEAETREFIEEAKACLAICRSYGVPLLINDR------------------VDVALACDAD  369 (502)
T ss_pred             hHHHHHHHHHHcCCCEEEEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcCh------------------HHHHHhcCCC
Confidence            3555677788899999999954333211112233333   345778887633                  2345667888


Q ss_pred             EEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE--EeecCCHh-----HHHHHH
Q 015614          101 YVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL--VFSVNDIT-----EIARIF  173 (403)
Q Consensus       101 yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi--a~~~~~~~-----D~~~ll  173 (403)
                      .|=+......  ....+.....+.-|=+|.|+      .++    ..++.+.|+|++++  ++...+..     ....+-
T Consensus       370 GvHl~~~d~~--~~~~r~~~~~~~~iG~S~h~------~~e----~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~  437 (502)
T PLN02898        370 GVHLGQSDMP--VRLARSLLGPGKIIGVSCKT------PEQ----AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLR  437 (502)
T ss_pred             EEEeChHhcC--HHHHHHhcCCCCEEEEeCCC------HHH----HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHH
Confidence            7766543211  11122111223333378885      233    35556689999996  44444422     222222


Q ss_pred             HHhccCCCCEEEEE
Q 015614          174 QLLSHCQVPIIAYS  187 (403)
Q Consensus       174 ~~~~~~~~p~i~~~  187 (403)
                      .+....++|+++++
T Consensus       438 ~~~~~~~~Pv~aiG  451 (502)
T PLN02898        438 EVCEASKLPVVAIG  451 (502)
T ss_pred             HHHHcCCCCEEEEC
Confidence            33334477877763

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.53  E-value=2.1  Score=41.82  Aligned_cols=38  Identities=32%  Similarity=0.707  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...+|+.|||=|+ +|-||+++..++++|+++.+++.+.
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~   72 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINK   72 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccc
Confidence            3567899999986 5779999999999999888888764

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=82.50  E-value=1.7  Score=42.89  Aligned_cols=36  Identities=28%  Similarity=0.299  Sum_probs=30.1

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|.+++|.|+|+.+.+++..++..|++|+.+.++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~  200 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA  200 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            478999999999999888877888998877777654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=82.49  E-value=44  Score=31.41  Aligned_cols=86  Identities=13%  Similarity=0.190  Sum_probs=58.3

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CC-----chHHHHHHhcC-CCcEEEEeecCCCCCCCCC
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QP-----GKDLEIILTKK-PLPVLIVYRPKWAGGLYEG   82 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~~-----~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~   82 (403)
                      +++|+.||..-|...+.+++++..+.|+|.+=+  |..+.. -|     .+.++.+++.+ +.|+=+.+-..        
T Consensus         6 ~~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~--DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~--------   75 (228)
T PTZ00170          6 KAIIAPSILAADFSKLADEAQDVLSGGADWLHV--DVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVS--------   75 (228)
T ss_pred             CCEEehhHhhcCHHHHHHHHHHHHHcCCCEEEE--ecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCC--------
Confidence            788999999999988888898887788888654  776521 11     24677777766 77776665521        


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEeccc
Q 015614           83 DEHKRLEALHLAEDLGADYVDFELKV  108 (403)
Q Consensus        83 ~~~~~~~ll~~~~~~g~~yvDiEl~~  108 (403)
                      ..+.++   +.+.+.|+++|-+=...
T Consensus        76 ~p~~~i---~~~~~~Gad~itvH~ea   98 (228)
T PTZ00170         76 NPEKWV---DDFAKAGASQFTFHIEA   98 (228)
T ss_pred             CHHHHH---HHHHHcCCCEEEEeccC
Confidence            233333   55667777777664443

>PLN02740 Alcohol dehydrogenase-like

Probab=82.47  E-value=1.6  Score=43.97  Aligned_cols=36  Identities=39%  Similarity=0.603  Sum_probs=31.4

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .+++++|+|+|+.+.+++..++.+|+ +|+++.++.+
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~  234 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE  234 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence            47899999999999999999999999 6888877654

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=82.26  E-value=1.6  Score=47.28  Aligned_cols=32  Identities=31%  Similarity=0.345  Sum_probs=28.6

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..|||||+|+|+.+++..+++.|++|.|+...
T Consensus        30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~   61 (617)
T PTZ00139         30 YDAVVVGAGGAGLRAALGLVELGYKTACISKL   61 (617)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence            46999999999999999999999999888764

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=82.18  E-value=54  Score=32.49  Aligned_cols=92  Identities=15%  Similarity=0.164  Sum_probs=53.4

Q ss_pred             CCCeeEEEecccCCHHHHHHHHHHHHhcCCCEE--EEEec-CCCCCCCchHHHHHH-hcCCCcEEEEeecCCCCCCCCCC
Q 015614            8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVV--EIRLD-CINNFQPGKDLEIIL-TKKPLPVLIVYRPKWAGGLYEGD   83 (403)
Q Consensus         8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~v--ElRlD-~l~~~~~~~~l~~l~-~~~~~PiI~T~R~~~eGG~~~~~   83 (403)
                      -+.|.+..|+.+=+--.+.....   +.|+|+.  |.--+ .+.-.+. .....+. .....|+++.+-.        .+
T Consensus         8 ~~~~~~lAPM~g~td~~fR~l~~---~~g~~~~~temvs~~~~~~~~~-~~~~~~~~~~~~~~~~vQl~g--------~~   75 (321)
T PRK10415          8 LRNRLIAAPMAGITDRPFRTLCY---EMGAGLTVSEMMSSNPQVWESD-KSRLRMVHIDEPGIRTVQIAG--------SD   75 (321)
T ss_pred             CCCCEEecCCCCCCcHHHHHHHH---HHCCCEEEEccEEcchhhhcCH-hHHHHhccCccCCCEEEEEeC--------CC
Confidence            34578888998888877776554   4578863  53222 1111010 1111111 1224566666531        24


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeccccch
Q 015614           84 EHKRLEALHLAEDLGADYVDFELKVASN  111 (403)
Q Consensus        84 ~~~~~~ll~~~~~~g~~yvDiEl~~~~~  111 (403)
                      .++..+..+.+.+.|++.|||-+..|..
T Consensus        76 ~~~~~~aa~~~~~~g~d~IdlN~gCP~~  103 (321)
T PRK10415         76 PKEMADAARINVESGAQIIDINMGCPAK  103 (321)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeCCCCHH
Confidence            5666666666777899999999988763

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=82.12  E-value=23  Score=33.96  Aligned_cols=110  Identities=23%  Similarity=0.255  Sum_probs=70.1

Q ss_pred             HHHHHHHHhcCCCEEEEEec--CCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015614           26 LSNMYQAKAEGADVVEIRLD--CINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVD  103 (403)
Q Consensus        26 ~~~~~~~~~~~~D~vElRlD--~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvD  103 (403)
                      ...+..+...||+++=+-.|  +|..  ..+.+..+++..++|+|.  +   +   |=.+  .+ + ++.+...|+|.|=
T Consensus        73 ~~~A~~~~~~GA~aisvlte~~~f~g--~~~~l~~v~~~v~iPvl~--k---d---fi~~--~~-q-i~~a~~~GAD~Vl  138 (260)
T PRK00278         73 VEIAKAYEAGGAACLSVLTDERFFQG--SLEYLRAARAAVSLPVLR--K---D---FIID--PY-Q-IYEARAAGADAIL  138 (260)
T ss_pred             HHHHHHHHhCCCeEEEEecccccCCC--CHHHHHHHHHhcCCCEEe--e---e---ecCC--HH-H-HHHHHHcCCCEEE
Confidence            44455556789999944333  3332  235788888888999994  1   1   3222  23 2 5678889999998


Q ss_pred             Eeccc-cchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          104 FELKV-ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       104 iEl~~-~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.... ..+.+++++ ..+.-+..+++-.|+      .+|+    +++.+.|+|++=+
T Consensus       139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~------~~E~----~~A~~~gadiIgi  186 (260)
T PRK00278        139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHD------EEEL----ERALKLGAPLIGI  186 (260)
T ss_pred             EEeccCCHHHHHHHHHHHHHcCCeEEEEeCC------HHHH----HHHHHcCCCEEEE
Confidence            88776 333455555 344567888999997      2344    4466789987543

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=82.11  E-value=1.6  Score=47.43  Aligned_cols=34  Identities=21%  Similarity=0.165  Sum_probs=30.5

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHC-CCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~-g~~i~v~nR~~  401 (403)
                      ...|+|+|||-+|.+++..|++. |+++.|+.|.+
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~   66 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP   66 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence            35799999999999999999995 99999999864

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=81.98  E-value=51  Score=31.81  Aligned_cols=200  Identities=16%  Similarity=0.095  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCC--chHHHHHHhcC--CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (403)
                      ++.+.-++...+.|+|.||+=.   ...++  .+.+..+++..  +.++..-.|....+-. ...+    .-++.+++.|
T Consensus        20 e~k~~i~~~L~~~Gv~~IE~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~----~~~~~a~~~g   91 (273)
T cd07941          20 EDKLRIARKLDELGVDYIEGGW---PGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVK-AEED----PNLQALLEAG   91 (273)
T ss_pred             HHHHHHHHHHHHcCCCEEEecC---CcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCC-ccch----HHHHHHHhCC
Confidence            3333334444567999999822   11122  23345554433  5667776776544322 1111    3466788889


Q ss_pred             CcEEEEeccccc------------hH---HHHHH-hccCCCcEEEEe-ccCCCCCC-CHhHHHHHHHHHHHcCCCEEEEE
Q 015614           99 ADYVDFELKVAS------------NI---LGKQY-SSHQSGTRFIVS-CNLDCETP-SEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        99 ~~yvDiEl~~~~------------~~---~~~l~-~~~~~~~kiI~S-~H~f~~tp-~~~~l~~~~~~~~~~gadivKia  160 (403)
                      ++.|.+-....+            +.   ..+.. ..+..+.++.++ -+.++.+. +.+.+.++++++.+.|+|.+-++
T Consensus        92 ~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~  171 (273)
T cd07941          92 TPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLC  171 (273)
T ss_pred             CCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence            999888543321            11   12222 234455666553 23334433 35668999999999999988877


Q ss_pred             eec--CCHhHHHHHHHHhccC-C-CCEEEEEcCcc--chhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614          161 FSV--NDITEIARIFQLLSHC-Q-VPIIAYSVGER--GLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (403)
Q Consensus       161 ~~~--~~~~D~~~ll~~~~~~-~-~p~i~~~MG~~--G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~  230 (403)
                      =+.  .++.++..+++.+.+. + .|+-.=+=-..  |...-+..-.-|..+.-+++.+ +--.|+.+++++...++
T Consensus       172 DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGeraGn~~~e~~~~~L~  248 (273)
T cd07941         172 DTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGERCGNANLCSIIPNLQ  248 (273)
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccccccccccccHHHHHHHHH
Confidence            444  3577887777775432 2 33321111111  1111122222233333333332 23467777777766554

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>PRK06046 alanine dehydrogenase; Validated

Probab=81.95  E-value=1.4  Score=43.84  Aligned_cols=35  Identities=17%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             CCeEEEEcchhHHHHHHHHHHH-CCC-eEEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~-~g~-~i~v~nR~~~  402 (403)
                      -+++.|+|+|+.|++.+.++.. .++ +|+|++|+.+
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~  165 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKS  165 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHH
Confidence            4689999999999999999875 467 8999999864

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=81.69  E-value=35  Score=34.09  Aligned_cols=149  Identities=9%  Similarity=0.088  Sum_probs=85.4

Q ss_pred             EEeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEE---------eccc-----c-chHHHHHHhccCCCcEEEEec
Q 015614           69 IVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDF---------ELKV-----A-SNILGKQYSSHQSGTRFIVSC  130 (403)
Q Consensus        69 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDi---------El~~-----~-~~~~~~l~~~~~~~~kiI~S~  130 (403)
                      .|+|   +|++   +..+.++..++...+.+.|+++|.+         .+..     + .+.++++... .+++++.+-.
T Consensus         8 ~TLR---DG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~-~~~~~~~~ll   83 (333)
T TIGR03217         8 VTLR---DGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADV-VKRAKVAVLL   83 (333)
T ss_pred             CCCC---CCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHh-CCCCEEEEEe
Confidence            3555   5664   4567899999999999999999887         2221     1 1334444433 2455654322


Q ss_pred             cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCcc-chhh------hhhcCCCC
Q 015614          131 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER-GLVS------QLLSPKFN  203 (403)
Q Consensus       131 H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~-G~~S------Ril~~~~g  203 (403)
                      .     |.... .+-++.+.+.|.|++++++..+..+......+...+....+....|-.. -.+.      +.+.. +|
T Consensus        84 ~-----pg~~~-~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~-~G  156 (333)
T TIGR03217        84 L-----PGIGT-VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMES-YG  156 (333)
T ss_pred             c-----cCccC-HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHh-cC
Confidence            1     11111 2346888889999999999887777667777776666655544433221 1111      22211 23


Q ss_pred             CcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614          204 GALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       204 s~lty~~~~~~sApGQ~~~~~l~~~~~~~  232 (403)
                      ....|-  .  ..-|.++..++.+.+...
T Consensus       157 a~~i~i--~--DT~G~~~P~~v~~~v~~l  181 (333)
T TIGR03217       157 ADCVYI--V--DSAGAMLPDDVRDRVRAL  181 (333)
T ss_pred             CCEEEE--c--cCCCCCCHHHHHHHHHHH
Confidence            322211  1  335777777777777643

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=81.55  E-value=2  Score=43.53  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=29.5

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHC-CC-eEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~-g~-~i~v~nR~  400 (403)
                      ...++|||+|-++.+++|.|++. |. +|.|+.|.
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~   64 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG   64 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            45799999999999999999985 86 89999885

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=81.45  E-value=1.9  Score=42.04  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+.+++|+|+|+.+++++..+..+|++|+++.++.+
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~  197 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPD  197 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999999999998888899998888887653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=81.40  E-value=3.5  Score=42.20  Aligned_cols=111  Identities=22%  Similarity=0.292  Sum_probs=68.0

Q ss_pred             cCCCceEeecCc---ccHHHHHHHhcCCCCceEEe---cccchHHHHcccccCCHHHhhccceeEEEEeccCCeEEEEec
Q 015614          264 VNYNGIYVPMFV---DDLKKFFSTYSSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT  337 (403)
Q Consensus       264 ~gl~~~y~~~~~---~~~~~~~~~~~~~~~~G~~V---T~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NT  337 (403)
                      -|+|..=..+++   +.+.++++.+ .+.|.|.|+   -.|-+-.+-..+.+.         .|.=++.  |+ .+|+-.
T Consensus       114 aGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~~---------~~IPvFh--DD-qqGTai  180 (432)
T COG0281         114 AGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRYR---------MNIPVFH--DD-QQGTAI  180 (432)
T ss_pred             cCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhhc---------CCCCccc--cc-ccHHHH
Confidence            367754444554   3566667766 578999975   345554444333221         2333443  21 334211


Q ss_pred             c-HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC---eEEEEecC
Q 015614          338 D-CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID  400 (403)
Q Consensus       338 D-~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~---~i~v~nR~  400 (403)
                      = -.|++++|+-.             +..++..++++.|||-|+-|++..|...|+   +|++++|.
T Consensus       181 v~lA~llnalk~~-------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~  234 (432)
T COG0281         181 VTLAALLNALKLT-------------GKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK  234 (432)
T ss_pred             HHHHHHHHHHHHh-------------CCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence            1 12344444321             346777899999999999999999999997   59999874

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=81.40  E-value=2.6  Score=43.28  Aligned_cols=38  Identities=32%  Similarity=0.470  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.||++.|+|-|..|++++..+..+|++|..++|+.
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~  184 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED  184 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            35789999999999999999999999999999999853

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=81.38  E-value=16  Score=35.81  Aligned_cols=80  Identities=19%  Similarity=0.054  Sum_probs=55.8

Q ss_pred             EEecccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCC--CCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614           14 CAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNF--QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (403)
Q Consensus        14 cv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~--~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (403)
                      .+.|... +.++....++.+...|+|+|++-+|+....  ...+.++.+++..+.|+++-..         .+.    +.
T Consensus       119 ~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v---------~s~----~~  185 (299)
T cd02809         119 WFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGI---------LTP----ED  185 (299)
T ss_pred             EEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeec---------CCH----HH
Confidence            4455443 677776667777778999999999987521  1124677888878899998743         122    23


Q ss_pred             HHHHHHcCCcEEEEec
Q 015614           91 LHLAEDLGADYVDFEL  106 (403)
Q Consensus        91 l~~~~~~g~~yvDiEl  106 (403)
                      .+.+.+.|+++|++.-
T Consensus       186 a~~a~~~G~d~I~v~~  201 (299)
T cd02809         186 ALRAVDAGADGIVVSN  201 (299)
T ss_pred             HHHHHHCCCCEEEEcC
Confidence            4667789999999873

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>TIGR00190 thiC thiamine biosynthesis protein ThiC

Probab=81.23  E-value=11  Score=38.30  Aligned_cols=226  Identities=17%  Similarity=0.182  Sum_probs=123.8

Q ss_pred             ecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEee-----cCCCCCCCCCCHHHHHHH
Q 015614           16 PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYR-----PKWAGGLYEGDEHKRLEA   90 (403)
Q Consensus        16 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R-----~~~eGG~~~~~~~~~~~l   90 (403)
                      |-...++++-+..++.+.+.|||.|   .|+-..-+..+.-..+++.+++|+= |+-     .+..+...+.++++.++.
T Consensus        70 S~~~~d~~~E~~K~~~A~~~GADti---MDLStGgdl~~iR~~il~~s~vpvG-TVPiYqa~~~~~~~~~~mt~d~~~~~  145 (423)
T TIGR00190        70 SADTSDIEEEVEKALIAIKYGADTV---MDLSTGGDLDEIRKAILDAVPVPVG-TVPIYQAAEKVHGAVEDMDEDDMFRA  145 (423)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHHHHHHHHHHcCCCCcc-CccHHHHHHHhcCChhhCCHHHHHHH
Confidence            3344556666667888899999987   4665543322111233344555542 211     111234456788999999


Q ss_pred             HHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEec----------cCCCCCCCHhHHHHHHHHHHHcCCCEEEE-
Q 015614           91 LHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC----------NLDCETPSEEDLGYLVSRMQATGADIIKL-  159 (403)
Q Consensus        91 l~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tp~~~~l~~~~~~~~~~gadivKi-  159 (403)
                      ++.=++-|+||+-|--....+.++.+..  .+..-=|+|.          |+-.+.|=.++...+++-++++.. .+=+ 
T Consensus       146 ie~qa~dGVDfmTiH~Gi~~~~~~~~~~--~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDV-tlSLG  222 (423)
T TIGR00190       146 IEKQAKDGVDFMTIHAGVLLEYVERLKR--SGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDV-TLSLG  222 (423)
T ss_pred             HHHHHHhCCCEEEEccchhHHHHHHHHh--CCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCe-eeecc
Confidence            9999999999999987776666665542  2344446775          566778866666666666666541 0000 


Q ss_pred             -EeecC---CHhHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc-cc
Q 015614          160 -VFSVN---DITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE-HI  234 (403)
Q Consensus       160 -a~~~~---~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~-~~  234 (403)
                       ...|-   +..|-..+.++..          .|++-+-.|=.+   -.++.       -.||.+++.++..-.++. .+
T Consensus       223 DglRPG~i~DA~D~aQi~El~~----------lgeL~~rA~e~g---VQvMV-------EGPGHvPl~~I~~nv~lqK~l  282 (423)
T TIGR00190       223 DGLRPGCIADATDRAQISELIT----------LGELVERAREAD---VQCMV-------EGPGHVPLDQIEANVRLQKEL  282 (423)
T ss_pred             CCcCCCccccCCcHHHHHHHHH----------HHHHHHHHHHcC---CeEEE-------ECCCCCcHHHHHHHHHHHHHh
Confidence             12222   2334444444411          222222222211   01121       349999999988666543 33


Q ss_pred             cccceEEeeeccCCccc------CCHHHHHHHHHhcCCCce
Q 015614          235 NADTKVFGLISKPVGHS------KGPILHNPTFRHVNYNGI  269 (403)
Q Consensus       235 ~~~~~~~~liG~pi~hS------~SP~ihn~~~~~~gl~~~  269 (403)
                      ... -=||++|-=++-.      .+-.|=-+.....|-|..
T Consensus       283 c~~-APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAdfL  322 (423)
T TIGR00190       283 CDE-APFYVLGPLVTDIAPGYDHITSAIGAAIAGWAGADFL  322 (423)
T ss_pred             hCC-CCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCeE
Confidence            322 3467888433332      233344445566676654

The thiC ortholog is designated thiA in Bacillus subtilis.

>PRK10569 NAD(P)H-dependent FMN reductase; Provisional

Probab=81.15  E-value=3.5  Score=37.75  Aligned_cols=111  Identities=12%  Similarity=0.158  Sum_probs=70.7

Q ss_pred             ceEEeeeccCCcccCCHHHHHHHHHhcC-CCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhh
Q 015614          238 TKVFGLISKPVGHSKGPILHNPTFRHVN-YNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (403)
Q Consensus       238 ~~~~~liG~pi~hS~SP~ihn~~~~~~g-l~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  316 (403)
                      ++++++.|+|=..|.|-.+-+.+.+.+. -.+.+..+++.++..  +.+     .+..    +      ..+.+.+..+.
T Consensus         1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~--~~~-----~~~~----~------~~~~~~~~~~~   63 (191)
T PRK10569          1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAP--EDL-----LYAR----F------DSPALKTFTEQ   63 (191)
T ss_pred             CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCCh--HHH-----Hhcc----C------CCHHHHHHHHH
Confidence            4688999999999999998888776543 234555555433221  111     1100    0      01244566688


Q ss_pred             ccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHH
Q 015614          317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGR  381 (403)
Q Consensus       317 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaar  381 (403)
                      +..+..|++-.+.     ||-.+.|.++.+-+.+.           ...+.+|.++++++||...
T Consensus        64 i~~AD~iIi~tP~-----Y~~s~pg~LKn~iD~l~-----------~~~l~~K~v~iiat~G~~~  112 (191)
T PRK10569         64 LAQADGLIVATPV-----YKASFSGALKTLLDLLP-----------ERALEHKVVLPLATGGSVA  112 (191)
T ss_pred             HHHCCEEEEECCc-----cCCCCCHHHHHHHHhCC-----------hhhhCCCEEEEEEecCCch
Confidence            8888998876212     67778888887765542           1246789999999887743

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=81.13  E-value=2.2  Score=44.47  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++||||+|-|+-.++-.|++.|++++++.+.+
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep  157 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP  157 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            4789999999999999999999999999988764

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=81.08  E-value=51  Score=31.22  Aligned_cols=82  Identities=16%  Similarity=0.167  Sum_probs=51.6

Q ss_pred             EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHHhcCCCcEEEEee
Q 015614           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTKKPLPVLIVYR   72 (403)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~~~~~~PiI~T~R   72 (403)
                      -++.-.|+.+.....++...+.|+|++|+-+-+-.+.-+                     .+.++.+|+..++|+++-..
T Consensus         5 y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y   84 (242)
T cd04724           5 YITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGY   84 (242)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEe
Confidence            457778899888888888888899999997633222211                     12344555556789665333


Q ss_pred             cCCCCCCCCCCH-HHH--HHHHHHHHHcCCcEEEE
Q 015614           73 PKWAGGLYEGDE-HKR--LEALHLAEDLGADYVDF  104 (403)
Q Consensus        73 ~~~eGG~~~~~~-~~~--~~ll~~~~~~g~~yvDi  104 (403)
                      -         +. -.+  -++++.+.+.|++.+=+
T Consensus        85 ~---------n~~~~~G~~~fi~~~~~aG~~giii  110 (242)
T cd04724          85 Y---------NPILQYGLERFLRDAKEAGVDGLII  110 (242)
T ss_pred             c---------CHHHHhCHHHHHHHHHHCCCcEEEE
Confidence            1         11 111  34567778888887665

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=80.77  E-value=2  Score=46.81  Aligned_cols=32  Identities=31%  Similarity=0.351  Sum_probs=28.3

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..|||||+|+|+.+++..+++.|++|.|+...
T Consensus        51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~   82 (635)
T PLN00128         51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL   82 (635)
T ss_pred             cCEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence            35999999999999999999999998888754

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=80.76  E-value=1.9  Score=40.07  Aligned_cols=35  Identities=40%  Similarity=0.512  Sum_probs=30.1

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++|.|+|+.+++++..+...|.+|+++.++.
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~  168 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD  168 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            57899999999999999988888999888887763

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=80.70  E-value=1.9  Score=41.13  Aligned_cols=33  Identities=30%  Similarity=0.456  Sum_probs=30.3

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      ..+++|+|+||-+-.++..|...|+ ++.|++.+
T Consensus        30 ~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d   63 (254)
T COG0476          30 DSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFD   63 (254)
T ss_pred             hCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCC
Confidence            4579999999999999999999999 99999875

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=80.69  E-value=2.8  Score=41.93  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=29.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++|.|+|+.+.+++..++.+|++|+++.++.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~  217 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS  217 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999999999999998899999776665543

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=80.65  E-value=5.7  Score=37.87  Aligned_cols=49  Identities=33%  Similarity=0.407  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV  395 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~  395 (403)
                      +.|+..+++..+...+        ...+++++++|-|.|.+++.++..|.++|++|.
T Consensus        11 g~GV~~~~~~~~~~~~--------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv   59 (244)
T PF00208_consen   11 GYGVAYAIEAALEHLG--------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVV   59 (244)
T ss_dssp             HHHHHHHHHHHHHHTT--------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHHHHcC--------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEE
Confidence            5688888887766322        134789999999999999999999999998653

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK13352 thiamine biosynthesis protein ThiC; Provisional

Probab=80.65  E-value=23  Score=36.32  Aligned_cols=225  Identities=16%  Similarity=0.173  Sum_probs=125.0

Q ss_pred             ecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEe-------ec-CCCCCCCCCCHHHH
Q 015614           16 PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVY-------RP-KWAGGLYEGDEHKR   87 (403)
Q Consensus        16 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~-------R~-~~eGG~~~~~~~~~   87 (403)
                      |-...++++-+..++.+.+.|||.|   .|+-..-+..+.-..+++.+++|+= |+       +. +..|+..+.++++.
T Consensus        70 S~~~~d~~~E~~K~~~A~~~GADti---MDLStggdl~~iR~~il~~s~vpvG-TVPiYqa~~~~~~k~~~~~~mt~d~~  145 (431)
T PRK13352         70 SSDISDIEEELEKAKVAVKYGADTI---MDLSTGGDLDEIRRAIIEASPVPVG-TVPIYQAAVEAARKYGSVVDMTEDDL  145 (431)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHHHHHHHHHHcCCCCCc-ChhHHHHHHHHHhcCCChhhCCHHHH
Confidence            4445566666777888899999987   4665543322212233444555542 21       11 13455567889999


Q ss_pred             HHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEec----------cCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614           88 LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC----------NLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      ++.++.=++-|+||+-|--....+.++.+..  .+..-=|+|.          |+..+.|=.++...+++-++++..  .
T Consensus       146 ~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~--~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDV--t  221 (431)
T PRK13352        146 FDVIEKQAKDGVDFMTIHCGVTRETLERLKK--SGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDV--T  221 (431)
T ss_pred             HHHHHHHHHhCCCEEEEccchhHHHHHHHHh--cCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCe--e
Confidence            9999999999999999987776666655542  1333446664          666888866666666666666541  1


Q ss_pred             E-E--EeecC---CHhHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhh
Q 015614          158 K-L--VFSVN---DITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV  231 (403)
Q Consensus       158 K-i--a~~~~---~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~  231 (403)
                      = +  ...|-   +..|-..+.++..          .|++-+-.|=.+   -.++     -+  .||.+++.++..-.++
T Consensus       222 lSLGDglRPG~i~Da~D~aQi~El~~----------lgeL~~RA~e~g---VQvM-----VE--GPGHvPl~~I~~nv~l  281 (431)
T PRK13352        222 LSLGDGLRPGCIADATDRAQIQELIT----------LGELVKRAREAG---VQVM-----VE--GPGHVPLDQIEANVKL  281 (431)
T ss_pred             eeccCCcCCCccccCCcHHHHHHHHH----------HHHHHHHHHHcC---CeEE-----EE--CCCCCCHHHHHHHHHH
Confidence            0 0  12222   2334444444311          122222222111   0112     23  3999999998866654


Q ss_pred             c-cccccceEEeeeccCCccc------CCHHHHHHHHHhcCCCce
Q 015614          232 E-HINADTKVFGLISKPVGHS------KGPILHNPTFRHVNYNGI  269 (403)
Q Consensus       232 ~-~~~~~~~~~~liG~pi~hS------~SP~ihn~~~~~~gl~~~  269 (403)
                      . .+... -=|||+|-=+.-.      .+-.|=-+.....|-|..
T Consensus       282 ~K~lc~~-APfYvLGPLvTDiApGYDHIt~AIGgAiAa~~GAdfL  325 (431)
T PRK13352        282 QKRLCHG-APFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADFL  325 (431)
T ss_pred             HHHhhCC-CCceecCccccccCCCchHHHHHHHHHHHHhcCCCeE
Confidence            3 33322 2466778433332      233444555666676654

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=80.35  E-value=69  Score=32.31  Aligned_cols=197  Identities=15%  Similarity=0.202  Sum_probs=107.4

Q ss_pred             EecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614           15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (403)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (403)
                      ++++..+..++..   ...+.|+|.||+-.=...+ ++.+.+..+++.. +..+..-.|..             .+-++.
T Consensus        18 ~~~s~~~k~~ia~---~L~~~Gv~~IEvG~p~~~~-~~~e~i~~i~~~~~~~~i~~~~r~~-------------~~di~~   80 (365)
T TIGR02660        18 VAFTAAEKLAIAR---ALDEAGVDELEVGIPAMGE-EERAVIRAIVALGLPARLMAWCRAR-------------DADIEA   80 (365)
T ss_pred             CCCCHHHHHHHHH---HHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHcCCCcEEEEEcCCC-------------HHHHHH
Confidence            3344444444444   4445799999995322221 1124556665443 22333333321             223567


Q ss_pred             HHHcCCcEEEEeccccch------------HHH---HHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614           94 AEDLGADYVDFELKVASN------------ILG---KQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus        94 ~~~~g~~yvDiEl~~~~~------------~~~---~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      +.+.|++.|-+-....+.            .++   +.+ ..+..+.++-.++=+...+ +.+.+.++++++.+.|+|.+
T Consensus        81 a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~-~~~~l~~~~~~~~~~Ga~~i  159 (365)
T TIGR02660        81 AARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRA-DPDFLVELAEVAAEAGADRF  159 (365)
T ss_pred             HHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCC-CHHHHHHHHHHHHHcCcCEE
Confidence            788899988887665431            111   122 2344566776666555444 36789999999999999998


Q ss_pred             EEEeecC--CHhHHHHHHHHhcc-CCCCEEEEEcCccc--hhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhh
Q 015614          158 KLVFSVN--DITEIARIFQLLSH-CQVPIIAYSVGERG--LVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTY  229 (403)
Q Consensus       158 Kia~~~~--~~~D~~~ll~~~~~-~~~p~i~~~MG~~G--~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~  229 (403)
                      -++=+.-  ++.++.++.+.+.+ .+.|+-.=+=-..|  ...=+..-..|....-+++.+ +-..|+.+++++...+
T Consensus       160 ~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L  237 (365)
T TIGR02660       160 RFADTVGILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAMAL  237 (365)
T ss_pred             EEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHHHHH
Confidence            8876553  57788777776543 24443221212222  122222223344333344432 2457888888877655

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>PRK04148 hypothetical protein; Provisional

Probab=80.30  E-value=2  Score=37.17  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=29.5

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ++++++++|.| .+.+++-.|+++|.+|+.++.++
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~   49 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINE   49 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence            46789999999 88888989999999999888764

>PLN02661 Putative thiazole synthesis

Probab=80.03  E-value=2.5  Score=42.56  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=29.3

Q ss_pred             CeEEEEcchhHHHHHHHHHHHC-CCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~-g~~i~v~nR~~  401 (403)
                      ..++|+|+|.++-++++.|++. |.+|.|+.|+.
T Consensus        93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            4799999999999999999976 77999998864

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=80.01  E-value=12  Score=37.30  Aligned_cols=78  Identities=19%  Similarity=0.199  Sum_probs=47.7

Q ss_pred             HHHHHHHHhcCCCEEEEEecC-------CCCC-C---C-------------chHHHHHHhcCCCcEEEEeecC-C---CC
Q 015614           26 LSNMYQAKAEGADVVEIRLDC-------INNF-Q---P-------------GKDLEIILTKKPLPVLIVYRPK-W---AG   77 (403)
Q Consensus        26 ~~~~~~~~~~~~D~vElRlD~-------l~~~-~---~-------------~~~l~~l~~~~~~PiI~T~R~~-~---eG   77 (403)
                      ..-++.+.+.|.|.|||-.-+       |.+. +   +             .+.++.+|+...-.+.+.+|-. .   ++
T Consensus       152 ~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~  231 (338)
T cd04733         152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRG  231 (338)
T ss_pred             HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCC
Confidence            333455577899999998764       2221 1   1             1456667766543344455532 1   23


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           78 GLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        78 G~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      |.   +.++-.++.+.+.+.|++||.|-.
T Consensus       232 g~---~~eea~~ia~~Le~~Gvd~iev~~  257 (338)
T cd04733         232 GF---TEEDALEVVEALEEAGVDLVELSG  257 (338)
T ss_pred             CC---CHHHHHHHHHHHHHcCCCEEEecC
Confidence            42   556778888888899999987643

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	403
2gpt_A	523	Crystal Structure Of Arabidopsis Dehydroquinate Deh		1e-101
2o7q_A	523	Crystal Structure Of The A. Thaliana Dhq-Dehydroshi		1e-100
1nvt_A	287	Crystal Structure Of Shikimate Dehydrogenase (Aroe		6e-19
2hk7_A	269	Crystal Structure Of Shikimate Dehydrogenase From A		1e-14
2hk9_A	275	Crystal Structure Of Shikimate Dehydrogenase From A		1e-14
2egg_A	297	Crystal Structure Of Shikimate 5-Dehydrogenase (Aro		1e-13
3don_A	277	Crystal Structure Of Shikimate Dehydrogenase From S		2e-13
3toz_A	315	2.2 Angstrom Crystal Structure Of Shikimate 5-Dehyd		3e-13
4fq8_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		6e-11
4fr5_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		7e-11
3phg_A	269	Crystal Structure Of The Shikimate 5-Dehydrogenase		7e-11
4fos_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		7e-11
4foo_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		7e-11
4fpx_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		7e-11
3js3_A	258	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		2e-10
1npy_A	271	Structure Of Shikimate 5-Dehydrogenase-Like Protein		4e-10
4fsh_A	271	Crystal Structure Of Shikimate Dehydrogenase (aroe)		5e-10
4guf_A	276	1.5 Angstrom Crystal Structure Of The Salmonella En		9e-10
3o1n_A	276	1.03 Angstrom Crystal Structure Of Q236a Mutant Typ		3e-09
1qfe_A	252	The Structure Of Type I 3-Dehydroquinate Dehydratas		3e-09
3l2i_A	276	1.85 Angstrom Crystal Structure Of The 3-Dehydroqui		4e-09
3m7w_A	255	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		5e-09
3t4e_A	312	1.95 Angstrom Crystal Structure Of Shikimate 5-Dehy		7e-09
3fbt_A	282	Crystal Structure Of A Chorismate MutaseSHIKIMATE 5		1e-08
1wxd_A	263	Crystal Structure Of Shikimate 5-dehydrogenase (aro		2e-08
1nyt_A	271	Shikimate Dehydrogenase Aroe Complexed With Nadp+ L		2e-08
1sfl_A	238	1.9a Crystal Structure Of Staphylococcus Aureus Typ		2e-08
3nnt_A	276	Crystal Structure Of K170m Mutant Of Type I 3-Dehyd		2e-08
3o8q_A	281	1.45 Angstrom Resolution Crystal Structure Of Shiki		4e-08
3pgj_A	302	2.49 Angstrom Resolution Crystal Structure Of Shiki		4e-08
3o8q_B	275	1.45 Angstrom Resolution Crystal Structure Of Shiki		4e-08
1sfj_A	238	2.4a Crystal Structure Of Staphylococcus Aureus Typ		7e-08
3tum_B	269	2.15 Angstrom Resolution Crystal Structure Of A Shi		2e-07
1vi2_A	300	Crystal Structure Of Shikimate-5-Dehydrogenase With		4e-07
1npd_A	288	X-Ray Structure Of Shikimate Dehydrogenase Complexe		4e-07
2ox1_A	196	Archaeal Dehydroquinase Length = 196		5e-07
2yr1_A	257	Crystal Structure Of 3-Dehydroquinate Dehydratase F		5e-07
2nlo_A	302	Crystal Structure Of The Quinate Dehydrogenase From		4e-06
3jyo_A	283	Quinate Dehydrogenase From Corynebacterium Glutamic		5e-06
3u62_A	253	Crystal Structure Of Shikimate Dehydrogenase From T		1e-05
2egz_A	219	Crystal Structure Of The 3-Dehydroquinate Dehydrata		2e-05
3pwz_A	272	Crystal Structure Of An Ael1 Enzyme From Pseudomona		6e-04

>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate Dehydratase- Shikimate Dehydrogenase In Complex With Tartrate And Shikimate Length = 523

Iteration: 1
 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/391 (48%), Positives = 255/391 (65%), Gaps = 2/391 (0%)
Query: 8   KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
           KN ++ICAP+MA S+++++    +A   GAD+VEIRLD + +F P +DL+ I+ K PLP 
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
           L  YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +           + I
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187
           VS +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLIS 245
           +GERGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I 
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMK 305
           KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 306 FCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSP 365
            CDEV PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  +   S  SP
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 366 LAGRMFVLXXXXXXXXXXXXXXKSRGARVVI 396
           LA +  V+              K +GA+VVI
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVI 392

>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H) Length = 523

Iteration: 1
 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/391 (48%), Positives = 254/391 (64%), Gaps = 2/391 (0%)
Query: 8   KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
           KN ++ICAP+MA S+++++    +A   GAD+VEIRLD + +F P +DL+ I+ K PLP 
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
           L  YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +           + I
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187
           VS +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLIS 245
           +GERGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I 
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMK 305
           KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 306 FCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSP 365
            CDEV PLA++I AVNTI+RR SDGKL+GYNTD   SI+AIED ++  G  +   S  SP
Sbjct: 302 XCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 366 LAGRMFVLXXXXXXXXXXXXXXKSRGARVVI 396
           LA +  V+              K +GA+VVI
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVI 392

>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or Mj1084) In Complex With Nadp+ Length = 287

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           INA TKV GLI  PV HS  PI+HN  F+    N +YV   V  ++LK       +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           GF+V  P+K  +MK+ DE+   AQ I AVNTI  +  DGK IGYNTD   +  A+E+ I 
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEIG 124
Query: 352 ERGYKN 357
               KN
Sbjct: 125 RVKDKN 130

>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Mercury At 2.5 Angstrom Resolution Length = 269

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           INA T+++G+I  PV HS  P+  N   R+   N +Y+   +  ++LKK F  + +    
Sbjct: 2   INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 61
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KE ++   D V   A+ I AVNT+  +  +GK  GYNTD    + +++  I 
Sbjct: 62  GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 119
Query: 352 E 352
           E
Sbjct: 120 E 120

>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Shikimate And Nadp+ At 2.2 Angstrom Resolution Length = 275

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           INA T+++G+I  PV HS  P+  N   R+   N +Y+   +  ++LKK F  + +    
Sbjct: 8   INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 67
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KE ++   D V   A+ I AVNT+  +  +GK  GYNTD    + +++  I 
Sbjct: 68  GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 125
Query: 352 E 352
           E
Sbjct: 126 E 126

>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Geobacillus Kaustophilus Length = 297

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 296
           KV+GLI  PV HS  P++HN  F  +     Y    V+   +    +   +   AG +V 
Sbjct: 24  KVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVT 83
Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAI 350
            P+K AV+ F DEV   A+ I AVNTII   +DG+L+GYNTD    + A+E+ +
Sbjct: 84  IPHKLAVIPFLDEVDEHARRIGAVNTIIN--NDGRLVGYNTDGLGYVQALEEEM 135

>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Staphylococcus Epidermidis Length = 277

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 10/103 (9%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVN----YNGIYVPMF-VDDLKKFFSTYSSPDFAGFSV 295
           F +I  P+ HS  P++H+  F+ +N    Y  I VP+    D+KK  S  S     GF+V
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKS---IDGFNV 59
Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTD 338
             P+KE ++ + D+++  A+++ AVNT++ +  DGK IGYNTD
Sbjct: 60  TIPHKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTD 100

>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase From Listeria Monocytogenes In Complex With Nad. Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 231 VEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSP 288
            E I   T++ GLI+ P+ HS  P +HN  F  +  + +Y+   V D  LK     + + 
Sbjct: 30  TERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAM 89
Query: 289 DFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIED 348
           +  G++V  P K  + K+ D++ P A+ + AVNT++    DG L G+ TD    + A+++
Sbjct: 90  NLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVN--DDGVLTGHITDGTGYMRALKE 147
Query: 349 A 349
           A
Sbjct: 148 A 148

>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori Length = 269

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Clostridium Difficile With Covalent Reaction Intermediate Length = 258

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 108/234 (46%), Gaps = 14/234 (5%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-----KPLPV 67
           IC P++ ++ + ++    + K    D++E R+D   N +  K+++ +L +       +P+
Sbjct: 22  ICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPL 81
Query: 68  LIVYRPKWAGG--LYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYS-SHQSGT 124
           L  +R    GG  L   D +  L    ++     D +D EL +   ++ +  + +H+   
Sbjct: 82  LFTFRSVVEGGEKLISRDYYTTLNK-EISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEV 140
Query: 125 RFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HC 179
           + I+S +   +TP +E++   + RMQ  GAD+ K+     +  ++  + +  +     + 
Sbjct: 141 KVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYA 200
Query: 180 QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
             PII  S+   G++S+L    F  AL +G+ K     G  + + L     + H
Sbjct: 201 DRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLH 254

>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607 Length = 271

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 234 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 292
           IN DT++   L  +P     G   HN  +  +  N IY      D++       +    G
Sbjct: 2   INKDTQLCMSLSGRPSNF--GTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
            +V  P+KE  M F DE+HP AQAI +VNTI+    +G L  YNTD  A +  IE
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVN--DNGFLRAYNTDYIAIVKLIE 112

>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) Clinical Variant V2356 From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       + +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLPLESHIKNEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A   A++NT++    + +L+GYNTD          ++K + 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECASINTLVLE--NDELVGYNTDA----LGFYLSLKHQN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica 3- Dehydroquinate Dehydratase (arod) E86a Mutant Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 16/235 (6%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
           I   LM +++  V S     +    D++E R+D   N        +    +  I+T KPL
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
             L  +R   AGG       + ++    A D G  D +D EL    + +      +HQ  
Sbjct: 102 --LFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
              I+S +   +TP+ E++   + +MQ  GADI K+        ++  +       Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
              PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 274

>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Length = 276

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
           I   LM +++  V S     +    D++E R+D   N        +    +  I+T KPL
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
             L  +R    GG       + ++    A D G  D +D EL    + +      +HQ  
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
              I+S +   +TP+ E++   + +MQ  GADI K+        ++  +       Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
              PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTILH 274

>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From Salmonella Typhi Length = 252

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 12/233 (5%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDL----EIILTKKP-LPV 67
           I   LM + +  V +     +    D++E R+D   +    + +     +I    P +P+
Sbjct: 18  IIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPL 77
Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRF 126
           L  +R    GG         L     A D G  D +D EL      +        +   +
Sbjct: 78  LFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVY 137
Query: 127 IVSCNLDC-ETPSEEDLGYLVSRMQATGADIIKLVF---SVNDI-TEIARIFQLLSH-CQ 180
           +V  N D  +TPS E++   + +MQA GADI K+     S +D+ T +    ++  H   
Sbjct: 138 VVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYAD 197
Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
            P+I  S+ + G++S+L    F  A  +G++K     G   V  LR    + H
Sbjct: 198 RPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILH 250

>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2. Length = 276

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
           I   LM +++  V S     +    D++E R+D   N        +    +  I+T KPL
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
             L  +R    GG       + ++    A D G  D +D EL    + +      +HQ  
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
              I+S +   +TP+ E++   + +MQ  GADI K+        ++  +       Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
              PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 274

>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Covalent Complex With Dehydroquinate Length = 255

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
           I   LM +++  V S     +    D++E R+D   N        +    +  I+T KPL
Sbjct: 21  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 80
Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
             L  +R    GG       + ++    A D G  D +D EL    + +      +HQ  
Sbjct: 81  --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 138
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
              I+S +   +TP+ E++   + +MQ  GADI K+        ++  +       Q   
Sbjct: 139 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 198
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
              PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 199 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 253

>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium In Complex With Nad Length = 312

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 18/129 (13%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSP----- 288
           + A  ++ GL++ P+ HS  P + N           Y+   VD+     +T++S      
Sbjct: 27  VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDN-----TTFASAIEGLK 81
Query: 289 --DFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 346
                G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I   
Sbjct: 82  ALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIR-- 137
Query: 347 EDAIKERGY 355
             AIKE G+
Sbjct: 138 --AIKESGF 144

>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5- Dehydrogenase Fusion Protein From Clostridium Acetobutylicum Length = 282

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPMFVDDLKKFFSTYSSPD 289
           ++ +T ++GLI + +GHS    +H   F  V   GIY    VP   + LK+   T+    
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPK--EKLKESVDTFKIIK 58
Query: 290 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTD 338
             G +V  PYK  VMK   E+   A+ I AVNT+  + S   + G+NTD
Sbjct: 59  CGGLNVTIPYKVEVMKELYEISEKARKIGAVNTL--KFSREGISGFNTD 105

>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From Thermus Thermophilus Hb8 Length = 263

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY---------VPMFVDDLKKFFSTYSSPDFA 291
           F ++  PV HS  P +H      +   G Y         +P  + ++++ F         
Sbjct: 4   FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFR-------- 55
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
           G ++  P KEA +   D V P AQ I AVNT+++   +G+L G+NTD    + A++
Sbjct: 56  GVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQ--VEGRLFGFNTDAPGFLEALK 109

>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+ Length = 271

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVN----YNGIYVPM--FVDDLKKFFSTYSSPDFAG 292
           + + +   P+ HSK P +H    + +N    Y  +  P+  F++ L  FFS        G
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGK----G 57
Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
            +V  P+KE      DE+   A    AVNT++R   DG+L+G NTD    ++ +E
Sbjct: 58  ANVTVPFKEEAFARADELTERAALAGAVNTLMRL-EDGRLLGDNTDGVGLLSDLE 111

>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, Apo Form Length = 238

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 21  SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LTKKPLPVLIVYRPKWA 76
           S+E+ L      + +  DV+E+R+D   N    +  E+I    + +    +L+ YR K  
Sbjct: 15  SIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQ 74
Query: 77  GGL--YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY---SSHQSGTRFIVSCN 131
           GG   +  D +  L +  LA   G D +D E +   +I   Q       Q     I+S +
Sbjct: 75  GGYGQFTNDSYLNLIS-DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHH 133
Query: 132 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS------HCQVPIIA 185
               TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S       C+V  + 
Sbjct: 134 NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VG 191
Query: 186 YSVGERGLVSQLLSPKFNGALVYGSLKGTP 215
            S+ + GL+S+     F GAL YG + G P
Sbjct: 192 ISMSKLGLISRTAQGVFGGALTYGCI-GEP 220

>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Non-Covalent Complex With Dehydroquinate. Length = 276

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 16/235 (6%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
           I   LM +++  V S     +    D++E R+D   N        +    +  I+T KPL
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
             L  +R    GG       + ++    A D G  D +D EL    + +      +HQ  
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
              I+S +   +TP+ E++   + +MQ  GADI  +        ++  +       Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPMIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
              PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 274

>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 281

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 294
           + +   P+ HSK P +H    R    + IY    VP+  F +  K FF+        G +
Sbjct: 11  YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 66
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCE 340
           V  P+KE   +F D +   A+   AVNT +++  DG+++G NTD E
Sbjct: 67  VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGE 111

>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Shikimate Length = 302

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 294
           + +   P+ HSK P +H    R    + IY    VP+  F +  K FF+        G +
Sbjct: 32  YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 87
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCE 340
           V  P+KE   +F D +   A+   AVNT +++  DG+++G NTD E
Sbjct: 88  VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGE 132

>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 275

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 294
           + +   P+ HSK P +H    R    + IY    VP+  F +  K FF+        G +
Sbjct: 5   YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 60
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASI 343
           V  P+KE   +F D +   A+   AVNT +++  DG+++G NTD E  +
Sbjct: 61  VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEGLV 108

>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, With 3-Dehydroquinate Bound Length = 238

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 19/209 (9%)
Query: 22  VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LTKKPLPVLIVYRPKWAG 77
           +E+ L      + +  DV+E+R+D   N    +  E+I    + +    +L+ YR K  G
Sbjct: 16  IEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQG 75
Query: 78  GL--YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY---SSHQSGTRFIVSCNL 132
           G   +  D +  L +  LA   G D +D E +   +I   Q       Q     I+S + 
Sbjct: 76  GYGQFTNDSYLNLIS-DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHN 134
Query: 133 DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS------HCQVPIIAY 186
              TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S       C+V  +  
Sbjct: 135 FESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VGI 192
Query: 187 SVGERGLVSQLLSPKFNGALVYGSLKGTP 215
           S+ + GL+S+     F GAL YG + G P
Sbjct: 193 SMSKLGLISRTAQGVFGGALTYGCI-GEP 220

>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad Length = 300

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 291
           + A  ++ GL + P+ HS  P   N           Y    VD+           +    
Sbjct: 5   VTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXR 64
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I     AIK
Sbjct: 65  GTGVSXPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIR----AIK 118
Query: 352 ERGY 355
           E G+
Sbjct: 119 ESGF 122

>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With Nad+ From E.Coli (Ydib) Northeast Structural Genomics Research Consortium (Nesg) Target Er24 Length = 288

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 291
           + A  ++ GL + P+ HS  P   N           Y    VD+           +    
Sbjct: 3   VTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXR 62
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I     AIK
Sbjct: 63  GTGVSXPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIR----AIK 116
Query: 352 ERGY 355
           E G+
Sbjct: 117 ESGF 120

>pdb|2OX1|A Chain A, Archaeal Dehydroquinase Length = 196

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 34  AEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93
           AE ADVVE+R+D  +      D E ILT + +           GG +EGDE +R+E +  
Sbjct: 16  AEKADVVELRIDLFDFSGARVDKEKILTCRRVS---------DGGKFEGDERERIEKMKR 66
Query: 94  AED-LGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQAT 152
           A D L  DYVD E  +         S+     R I S +    TP   +L  +V   +  
Sbjct: 67  AFDSLNPDYVDLESDLPD-------SAFDFNCRIIESYHNFIRTPDYSELKGIVEGRRGD 119
Query: 153 GADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVY 208
              I  +  S  D+  I RI          ++A+ +GER   +++L+       +Y
Sbjct: 120 LVKIATMGKSKRDVETIVRILTNYDD----VVAFLMGERFSFTRVLAAYLGSPFIY 171

>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From Geobacillus Kaustophilus Hta426 Length = 257

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 29/240 (12%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK--------P 64
           ICAP++ +   +VL    +   +  D++E R D    F+   D E +L            
Sbjct: 22  ICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADF---FRAIDDQERVLATANGLRNIAGE 78
Query: 65  LPVLIVYRPKWAGG----LYEGDEHKRLEALHLAEDLGA-DYVDFELKVASNILGKQYSS 119
           +P+L   R +  GG    L E +  + +EA+  +   GA D VD+EL     I   +  +
Sbjct: 79  IPILFTIRSEREGGQPIPLNEAEVRRLIEAICRS---GAIDLVDYELAYGERIADVRRMT 135
Query: 120 HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC 179
            +     +VS +    TP +E L   + + +  GADI K+        ++  + Q     
Sbjct: 136 EECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEA 195
Query: 180 Q----VPIIAYSVGERGLVSQLLSPKFNGALVYG-----SLKGT-PVLGLPTVESLRQTY 229
           +    +P+I  ++G  G +++L    F  A+ +      S  G  P+  + TV S+ QTY
Sbjct: 196 RRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSILQTY 255

>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From Corynebacterium Glutamicum Length = 302

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 237 DTKVFGLISKPVGHSKGPILHNP---------TFRHVNYNGIYVPMFVDDLKKFFSTYSS 287
           D+ + GLI + +  S+ P +H            +R ++  G        DLK        
Sbjct: 22  DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASG--QDLKTLLDAALY 79
Query: 288 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
             F G ++  PYK+AV+   DEV   A  + AVNT++   + G   G+NTD       +E
Sbjct: 80  LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDAT-GHTTGHNTDVSGFGRGME 138
Query: 348 DAI 350
           + +
Sbjct: 139 EGL 141

>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In Complex With Nad Length = 283

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 237 DTKVFGLISKPVGHSKGPILHNP---------TFRHVNYNGIYVPMFVDDLKKFFSTYSS 287
           D+ + GLI + +  S+ P +H            +R ++  G        DLK        
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASG--QDLKTLLDAALY 60
Query: 288 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
             F G ++  PYK+AV+   DEV   A  + AVNT++   + G   G+NTD       +E
Sbjct: 61  LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDAT-GHTTGHNTDVSGFGRGME 119
Query: 348 DAI 350
           + +
Sbjct: 120 EGL 122

>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Thermotoga Maritima Length = 253

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VP--MFVDDLKKFFSTYSSPDFAGFS 294
           F +I  PV HS  P L+N  F+    N  Y    +P   F  ++++    Y      GF+
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYD-----GFN 57
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 346
              P+KE VM++ +     AQ I AVN + R    GK  GYNTD    + ++
Sbjct: 58  ATIPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDWVGVVKSL 102

>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From Aquifex Aeolicus Vf5 Length = 219

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 27  SNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGD 83
            N+ +AK +GAD+VE+R+D  ++       + LE + ++    +L +  P+  G   +  
Sbjct: 14  ENLKKAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTILTIRSPEEGGREVKNR 73
Query: 84  EHKRLEALHLAEDLG--ADYVDFELKVASNILGKQYS-SHQSGTRFIVSC-NLDCETPSE 139
           E        L E+L   +DY D EL  +  +L K Y+ + ++G + I+S  N +   P+ 
Sbjct: 74  EE-------LFEELSPLSDYTDIELS-SRGLLVKLYNITKEAGKKLIISYHNFELTPPN- 124
Query: 140 EDLGYLVSRMQATG---ADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQ 196
               +++  +   G     I K+    N   ++AR+  +    +   I  S+G+ G +S+
Sbjct: 125 ----WIIREVLREGYRYGGIPKIAVKANSYEDVARLLCISRQVEGEKILISMGDYGKISR 180
Query: 197 LLSPKFNGALVYGSLK 212
           L    F   + Y SL+
Sbjct: 181 LAGYVFGSVITYCSLE 196

>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas Putida Length = 272

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 241 FGLISKPVGHSKGPILH----NPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVG 296
           + +I +P+ H+K P++H      + + + Y  I   +  DD +     + S    G ++ 
Sbjct: 5   YAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSL--DDFEAQVLQFRSEGGKGMNIT 62
Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 352
            P+K    +  D     AQ   A N +  +  DG+++  N D    +  IE+ + E
Sbjct: 63  APFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEENLGE 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	1e-156
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	2e-58
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	5e-55
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	1e-53
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	2e-53
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	2e-53
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	6e-53
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	6e-52
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	3e-51
3js3_A	258	3-dehydroquinate dehydratase; AROD, covalent react	4e-49
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	8e-49
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	2e-48
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	8e-47
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	9e-47
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	7e-46
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	1e-45
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	2e-45
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	4e-45
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	4e-43
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	6e-41
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	9e-35
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	4e-34
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	1e-33
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	2e-33
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	7e-33

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Length = 523

 Score =  449 bits (1157), Expect = e-156
 Identities = 200/392 (51%), Positives = 268/392 (68%), Gaps = 2/392 (0%)

Query: 8   KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
           KN ++ICAP+MA S+++++    +A   GAD+VEIRLD + +F P +DL+ I+ K PLP 
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61

Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
           L  YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +           + I
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121

Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187
           VS +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181

Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLIS 245
           +GERGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I 
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241

Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMK 305
           KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301

Query: 306 FCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSP 365
            CDEV PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  +   S  SP
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361

Query: 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIF 397
           LA +  V+ GAGGAG+ALA+GAK +GA+VVI 
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIA 393

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* Length = 312

 Score =  192 bits (489), Expect = 2e-58
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 18/186 (9%)

Query: 218 GLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-- 275
                E+L        + A  ++ GL++ P+ HS  P + N           Y+   V  
Sbjct: 11  VDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDN 70

Query: 276 DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGY 335
                      +    G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GY
Sbjct: 71  TTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGY 128

Query: 336 NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RV 394
           NTD    I AI+++             G  + G+  VL GAGGA  A+   A   G   +
Sbjct: 129 NTDGTGHIRAIKES-------------GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEI 175

Query: 395 VIFDID 400
            +F+  
Sbjct: 176 KLFNRK 181

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A Length = 219

 Score =  180 bits (458), Expect = 5e-55
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 12  MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII--LTKKPLPVLI 69
           +I  PL   +  + L    +AK +GAD+VE+R+D  ++       E +  +  + L  ++
Sbjct: 2   LIAVPLDDTNFSENLK---KAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58

Query: 70  VYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVS 129
             R    GG    +  +  E L       +DY D EL     ++     + ++G + I+S
Sbjct: 59  TIRSPEEGGREVKNREELFEELSP----LSDYTDIELSSRGLLVKLYNITKEAGKKLIIS 114

Query: 130 CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 189
            +    TP    +  ++      G  I K+    N   ++AR+  +    +   I  S+G
Sbjct: 115 YHNFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEKILISMG 173

Query: 190 ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
           + G +S+L    F   + Y SL+     G   +E + +  K  +
Sbjct: 174 DYGKISRLAGYVFGSVITYCSLEKAFAPGQIPLEEMVELRKKFY 217

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* Length = 315

 Score =  179 bits (457), Expect = 1e-53
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 18/167 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           I   T++ GLI+ P+ HS  P +HN  F  +  + +Y+   V   +LK     + + +  
Sbjct: 33  ITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLR 92

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G++V  P K  + K+ D++ P A+ + AVNT++    DG L G+ TD    + A+++A  
Sbjct: 93  GWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA-- 148

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF 397
                      G  + G+   + GAGGA  A+   A   G   + IF
Sbjct: 149 -----------GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIF 184

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* Length = 238

 Score =  177 bits (449), Expect = 2e-53
 Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 13/234 (5%)

Query: 11  TMICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK----PL 65
             + A +  Q S+E+ L      + +  DV+E+R+D   N    +  E+I   K      
Sbjct: 4   VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSF 63

Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQY---SSHQ 121
            +L+ YR K  GG  +      L  +  LA   G D +D E +   +I   Q       Q
Sbjct: 64  KLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQ 123

Query: 122 SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC-- 179
                I+S +    TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S    
Sbjct: 124 YNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSD 183

Query: 180 --QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231
                ++  S+ + GL+S+     F GAL YG +      G   V  L+    +
Sbjct: 184 TMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL 237

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  177 bits (449), Expect = 2e-53
 Identities = 44/241 (18%), Positives = 89/241 (36%), Gaps = 11/241 (4%)

Query: 4   VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK- 62
           + I      ICAP++ +   +VL    +   +  D++E R D        + +       
Sbjct: 13  IWIGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGL 72

Query: 63  ----KPLPVLIVYRPKWAGGLYEGDEHKRLEAL--HLAEDLGADYVDFELKVASNILGKQ 116
                 +P+L   R +  GG         +  L   +      D VD+EL     I   +
Sbjct: 73  RNIAGEIPILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVR 132

Query: 117 YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLL 176
             + +     +VS +    TP +E L   + + +  GADI K+        ++  + Q  
Sbjct: 133 RMTEECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQAT 192

Query: 177 SHCQ----VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE 232
              +    +P+I  ++G  G +++L    F  A+ +     +   G   ++ +R    + 
Sbjct: 193 EEARRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSIL 252

Query: 233 H 233
            
Sbjct: 253 Q 253

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Length = 287

 Score =  176 bits (450), Expect = 6e-53
 Identities = 63/166 (37%), Positives = 84/166 (50%), Gaps = 18/166 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           INA TKV GLI  PV HS  PI+HN  F+    N +YV   V  ++LK       +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           GF+V  P+K  +MK+ DE+   AQ I AVNTI     DGK IGYNTD   +  A+E+   
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEE-- 122

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF 397
                         +  +  V+ GAGGA RA+AF    +   ++I 
Sbjct: 123 -----------IGRVKDKNIVIYGAGGAARAVAFELA-KDNNIIIA 156

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  173 bits (442), Expect = 6e-52
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 20/166 (12%)

Query: 234 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 292
           IN DT++   L  +P   + G   HN  +  +  N IY      D++       +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 352
            +V  P+KE  M F DE+HP AQAI +VNTI+    +G L  YNTD  A +  IE     
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117

Query: 353 RGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIF 397
           +               ++ V  G+GG  +A+    K+ G  ++ I+
Sbjct: 118 KN-------------AKVIVH-GSGGMAKAVVAAFKNSGFEKLKIY 149

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275

 Score =  171 bits (437), Expect = 3e-51
 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 17/171 (9%)

Query: 229 YKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYS 286
           +    INA T+++G+I  PV HS  P+  N   R+   N +Y+   +  ++LKK F  + 
Sbjct: 3   HHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFK 62

Query: 287 SPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 346
           +    G +V  P+KE ++   D V   A+ I AVNT+     +GK  GYNTD    + ++
Sbjct: 63  ALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSL 120

Query: 347 EDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF 397
           +                  +  +  ++ GAGGA RA+ +     GA+V ++
Sbjct: 121 KSL-------------IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLW 158

>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile} Length = 258

 Score =  166 bits (421), Expect = 4e-49
 Identities = 49/246 (19%), Positives = 108/246 (43%), Gaps = 12/246 (4%)

Query: 4   VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK- 62
           + I +    IC P++ ++ + ++    + K    D++E R+D   N +  K+++ +L + 
Sbjct: 13  ITIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYEL 72

Query: 63  ----KPLPVLIVYRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGK-Q 116
                 +P+L  +R    GG               ++     D +D EL +   ++ +  
Sbjct: 73  RSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVV 132

Query: 117 YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLL 176
             +H+   + I+S +   +TP +E++   + RMQ  GAD+ K+     +  ++  + +  
Sbjct: 133 NFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEAT 192

Query: 177 S-----HCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231
           +     +   PII  S+   G++S+L    F  AL +G+ K     G  + + L     +
Sbjct: 193 NEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNL 252

Query: 232 EHINAD 237
            H + +
Sbjct: 253 LHKSIN 258

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Length = 283

 Score =  166 bits (422), Expect = 8e-49
 Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPD 289
           D+ + GLI + +  S+ P +H           +Y  +          DLK          
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62

Query: 290 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDA 349
           F G ++  PYK+AV+   DEV   A  + AVNT++     G   G+NTD       +E+ 
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121

Query: 350 IKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401
                                 V  GAGG G A+A+   + G  ++ + D+D 
Sbjct: 122 -------------LPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1} Length = 231

 Score =  163 bits (414), Expect = 2e-48
 Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 9   NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPV 67
           N   I AP+M +  ++  + +  +K E  +++E R D +   +       I  K     +
Sbjct: 2   NAMRIVAPVMPRHFDEAQA-IDISKYEDVNLIEWRADFLPKDEIVAVAPAIFEKFAGKEI 60

Query: 68  LIVYRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRF 126
           +   R    GG       + ++ +  +      DY+DFE     ++  +           
Sbjct: 61  IFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEMLDFP----NL 116

Query: 127 IVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HCQV 181
           I+S +   ETP  E+L    S M      ++K+        ++  +          + + 
Sbjct: 117 ILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQ 174

Query: 182 PIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 235
                S+G+ G +S+        +  Y SL      G  T+  +++  +V  ++
Sbjct: 175 EFATISMGKLGRLSRFAGDVIGSSWTYVSLDHVSGPGQVTLNDMKRIIEVLEMD 228

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A 1l9w_A* 1qfe_A* Length = 276

 Score =  160 bits (406), Expect = 8e-47
 Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 12/242 (4%)

Query: 4   VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK- 62
           + + +    I   LM +++  V S     +    D++E R+D   N    + +       
Sbjct: 33  LVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAI 92

Query: 63  ----KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGK-Q 116
                  P+L  +R    GG       + ++    A D G  D +D EL    + +    
Sbjct: 93  REIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATV 152

Query: 117 YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLL 176
             +HQ     I+S +   +TP+ E++   + +MQ  GADI K+        ++  +    
Sbjct: 153 GYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTAT 212

Query: 177 S-----HCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231
                 +   PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    +
Sbjct: 213 VEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTI 272

Query: 232 EH 233
            H
Sbjct: 273 LH 274

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Length = 297

 Score =  161 bits (409), Expect = 9e-47
 Identities = 55/167 (32%), Positives = 77/167 (46%), Gaps = 17/167 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
                KV+GLI  PV HS  P++HN  F  +     Y    V    +    +   +   A
Sbjct: 19  QGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIA 78

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+K AV+ F DEV   A+ I AVNTII    DG+L+GYNTD    + A+E+   
Sbjct: 79  GVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEE-- 134

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF 397
                         L G+  ++ GAGG  R + F   S  A R+ + 
Sbjct: 135 ----------MNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMA 171

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Length = 282

 Score =  158 bits (402), Expect = 7e-46
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 18/167 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           ++ +T ++GLI + +GHS    +H   F  V   GIY    V  + LK+   T+      
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  PYK  VMK   E+   A+ I AVNT+        + G+NTD       +     
Sbjct: 61  GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSK--- 115

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIF 397
                     F   +   + V+ G+GGA RA+    K   A+ + + 
Sbjct: 116 ----------FRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVV 152

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Length = 263

 Score =  157 bits (399), Expect = 1e-45
 Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 19/162 (11%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 296
             F ++  PV HS  P +H      +   G Y       + L           F G ++ 
Sbjct: 2   LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRR-AFRGVNLT 60

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 356
            P KEA +   D V P AQ I AVNT+++   +G+L G+NTD    + A++         
Sbjct: 61  LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAG------- 111

Query: 357 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFD 398
                 G PL G   VL GAGGAGRA+AF  +  G  V +++
Sbjct: 112 ------GIPLKGPALVL-GAGGAGRAVAFALREAGLEVWVWN 146

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans} Length = 259

 Score =  156 bits (396), Expect = 2e-45
 Identities = 44/239 (18%), Positives = 93/239 (38%), Gaps = 14/239 (5%)

Query: 4   VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK- 62
             + + +  I  P+M Q++E+    +   + +  D++E R D +           I  K 
Sbjct: 28  QQMGRGSMKIVVPVMPQNIEEANQ-LDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKF 86

Query: 63  KPLPVLIVYRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQ 121
               V+   R +  GG         L  +  +A     DY+DFE     ++L + Y    
Sbjct: 87  SGHEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMYDF-- 144

Query: 122 SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS---- 177
             +  I+S +   ETP  E+L  + S + A    ++K+     +  ++  +         
Sbjct: 145 --SNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKT 200

Query: 178 -HCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 235
            +     +  S+ + G +S+L +     +  + SL+     G  ++  +R+  +V   N
Sbjct: 201 LNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQESAPGQISLADMRKIKEVLDAN 259

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} Length = 196

 Score =  153 bits (389), Expect = 4e-45
 Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 29/220 (13%)

Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYR 72
           + A L +              AE ADVVE+R+D  +      D E ILT          R
Sbjct: 3   LVATLSSPEEL--------ELAEKADVVELRIDLFDFSGARVDKEKILT---------CR 45

Query: 73  PKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 131
               GG +EGDE +R+E +    + L  DYVD E  +  +             R I S +
Sbjct: 46  RVSDGGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSA-------FDFNCRIIESYH 98

Query: 132 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 191
               TP   +L      ++    D++K+        ++  I ++L++    ++A+ +GER
Sbjct: 99  NFIRTPDYSEL---KGIVEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGER 154

Query: 192 GLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231
              +++L+       +Y  +      G  +++  R+    
Sbjct: 155 FSFTRVLAAYLGSPFIYCYVGSPKAPGQISLDDAREIISR 194

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* Length = 269

 Score =  150 bits (382), Expect = 4e-43
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 23/163 (14%)

Query: 238 TKVFGLISKPVGHSKGPILHNPTFR----HVNYNGIYVPMFVDDLKKFFSTYSSPDFAGF 293
            K FG+   P+ HSK P++HN  F      + + G Y P+ +       S +     +G 
Sbjct: 3   LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62

Query: 294 SVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKER 353
           +V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD      +++      
Sbjct: 63  NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115

Query: 354 GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396
                          +  ++ GAGG+ +ALA   K +G +V +
Sbjct: 116 ------------KNYQNALILGAGGSAKALACELKKQGLQVSV 146

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* Length = 277

 Score =  145 bits (368), Expect = 6e-41
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 18/160 (11%)

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFP 298
           F +I  P+ HS  P++H+  F+ +N    Y  + V  +  +      S     GF+V  P
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62

Query: 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 358
           +KE ++ + D+++  A+++ AVNT++ +  DGK IGYNTD    +  ++           
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQI--------- 111

Query: 359 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF 397
                  +     ++ GAGGA + +A          + + 
Sbjct: 112 ----YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVA 147

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  128 bits (325), Expect = 9e-35
 Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 16/160 (10%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 296
           + + +   P+ HSK P +H    + +N    Y  +    +D     + + S    G +V 
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 356
            P+KE      DE+   A    AVNT++R   DG+L+G NTD    ++ +E         
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERL------- 113

Query: 357 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396
                      G   +L GAGGA R +     S    V I
Sbjct: 114 ------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTI 147

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* Length = 281

 Score =  126 bits (320), Expect = 4e-34
 Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           + +    + +   P+ HSK P +H    R    + IY    V  D   +    + +    
Sbjct: 4   MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KE   +F D +   A+   AVNT+ +   DG+++G NTD E  +  +     
Sbjct: 64  GCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-- 120

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIF 397
                         L G   +L GAGGA R +      +  A + + 
Sbjct: 121 -----------QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVT 156

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} Length = 253

 Score =  124 bits (315), Expect = 1e-33
 Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 27/160 (16%)

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFP 298
           F +I  PV HS  P L+N  F+    N  Y    +  +            ++ GF+   P
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILE-EYDGFNATIP 61

Query: 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 358
           +KE VM++ +     AQ I AVN + R        GYNTD    + ++E           
Sbjct: 62  HKERVMRYVEPS-EDAQRIKAVNCVFR------GKGYNTDWVGVVKSLE----------- 103

Query: 359 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF 397
               G  +   + V+ GAGGA RA+ +     G   + + 
Sbjct: 104 ----GVEVKEPVVVV-GAGGAARAVIYALLQMGVKDIWVV 138

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Length = 272

 Score =  124 bits (315), Expect = 2e-33
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 16/160 (10%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 296
            ++ +   P+  SK P++ N      +    Y+      D  ++    +      G ++ 
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 356
            P+KE   +  DE    A+   A NT+ +   DGKL   NTD    +T ++         
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQRL------- 113

Query: 357 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396
                       +  ++ GAGGA + +          +V+
Sbjct: 114 ------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVL 147

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} Length = 272

 Score =  123 bits (311), Expect = 7e-33
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 17/162 (10%)

Query: 238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSV 295
           +  + +I +P+ H+K P++H    +  N    Y  +    DD +     + S    G ++
Sbjct: 2   SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61

Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 355
             P+K    +  D     AQ   A N +     DG+++  N D    +  IE+ +     
Sbjct: 62  TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEENL----- 114

Query: 356 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVI 396
                  G PL  R  +L GAGGA R         G + +VI
Sbjct: 115 -------GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVI 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	100.0
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	100.0
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	100.0
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	100.0
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	100.0
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	100.0
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	100.0
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	100.0
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	100.0
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	100.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	100.0
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	100.0
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	100.0
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	100.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	100.0
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	100.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	100.0
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	100.0
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	100.0
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	100.0
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	100.0
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	100.0
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	100.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	100.0
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	100.0
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.91
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.9
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.44
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.67
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.63
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.6
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.56
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	97.81
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.1
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	97.04
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	96.98
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	96.91
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.88
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.54
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	96.49
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.27
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.25
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	96.19
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	96.15
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	96.14
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.11
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	96.11
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	96.1
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	96.03
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	96.0
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	95.85
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.79
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.78
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.76
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.61
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.61
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	95.6
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.54
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.49
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.46
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.31
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.23
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	95.2
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.19
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	95.19
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	95.15
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	95.11
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.85
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.7
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.64
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	94.63
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	94.61
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.57
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.48
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	94.48
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	94.39
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.32
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.12
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	94.11
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	94.09
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	94.01
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	93.98
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	93.9
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.86
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	93.8
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	93.76
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.73
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	93.72
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	93.61
3rih_A	293	Short chain dehydrogenase or reductase; structural	93.61
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.59
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	93.55
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	93.54
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	93.48
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.46
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	93.41
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.39
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	93.27
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.26
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	93.26
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.25
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	93.21
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	93.21
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	93.14
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	93.13
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.12
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	93.1
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	93.09
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	93.02
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	92.93
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.91
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	92.89
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	92.87
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	92.85
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	92.8
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	92.8
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.8
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	92.79
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.76
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	92.74
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	92.73
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	92.72
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	92.7
4dqx_A	277	Probable oxidoreductase protein; structural genomi	92.58
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	92.58
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	92.57
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	92.5
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	92.47
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	92.46
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	92.46
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	92.45
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	92.44
1xhl_A	297	Short-chain dehydrogenase/reductase family member	92.4
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	92.38
1yx1_A	264	Hypothetical protein PA2260; structural genomics,	92.34
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	92.33
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.33
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	92.32
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	92.31
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.29
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.28
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	92.27
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	92.23
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	92.19
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	92.17
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	92.08
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	92.08
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	92.07
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	92.05
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	91.98
3cxt_A	291	Dehydrogenase with different specificities; rossma	91.93
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	91.91
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	91.88
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	91.84
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	91.84
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	91.81
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	91.79
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	91.79
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	91.79
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	91.73
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	91.63
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	91.63
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	91.59
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	91.58
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	91.58
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	91.54
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	91.52
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	91.5
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	91.46
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	91.41
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	91.39
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	91.38
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.33
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	91.26
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	91.25
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.13
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	91.03
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	91.02
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	91.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	90.94
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	90.92
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	90.88
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	90.88
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.86
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	90.8
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	90.79
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	90.67
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	90.65
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	90.64
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	90.56
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	90.54
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	90.49
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	90.49
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	90.47
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	90.47
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	90.43
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	90.41
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	90.39
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.31
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	90.23
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	90.18
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	90.17
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	89.97
2bry_A	497	NEDD9 interacting protein with calponin homology a	89.97
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	89.91
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	89.89
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	89.86
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	89.79
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	89.76
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	89.74
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	89.73
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	89.65
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	89.65
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	89.65
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	89.57
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	89.56
4eye_A	342	Probable oxidoreductase; structural genomics, niai	89.55
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	89.55
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.53
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	89.52
3oa3_A	288	Aldolase; structural genomics, seattle structural	89.52
3gms_A	340	Putative NADPH:quinone reductase; structural genom	89.46
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	89.44
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.42
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	89.38
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	89.37
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	89.37
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	89.26
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	89.25
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	89.24
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	89.24
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	89.23
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.08
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	88.91
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	88.84
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	88.83
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	88.82
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	88.77
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	88.75
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	88.72
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	88.72
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	88.63
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	88.52
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	88.5
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.49
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	88.49
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	88.48
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	88.43
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	88.41
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	88.4
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	88.35
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	88.17
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	88.16
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	88.14
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	88.05
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	88.03
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	88.0
2g0w_A	296	LMO2234 protein; putative sugar isomerase, structu	87.94
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	87.91
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	87.88
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	87.84
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	87.82
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	87.81
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	87.8
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	87.8
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	87.77
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	87.77
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	87.74
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	87.74
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	87.71
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	87.7
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	87.66
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	87.64
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	87.62
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	87.62
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	87.61
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	87.61
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	87.61
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	87.57
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	87.55
3e02_A	311	Uncharacterized protein DUF849; structural genomic	87.52
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	87.42
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	87.41
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	87.39
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	87.38
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	87.35
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	87.28
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	87.28
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	87.22
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	87.15
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	87.06
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	87.04
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	86.97
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	86.94
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	86.85
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	86.84
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	86.82
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	86.81
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	86.8
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	86.73
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	86.63
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	86.6
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	86.56
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	86.5
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	86.42
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	86.34
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	86.32
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	86.3
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	86.29
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	86.24
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	86.19
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	86.14
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	86.09
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	86.06
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	86.05
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	86.04
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	86.01
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	85.98
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	85.93
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	85.93
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	85.93
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	85.92
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	85.91
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	85.88
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	85.78
2q02_A	272	Putative cytoplasmic protein; structural genomics,	85.73
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	85.72
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	85.7
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	85.66
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	85.58
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	85.52
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	85.49
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	85.46
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	85.45
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	85.3
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.27
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	85.19
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	85.11
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	85.03
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	84.86
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	84.79
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	84.77
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	84.76
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	84.71
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	84.66
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	84.61
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	84.51
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	84.5
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	84.49
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	84.44
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	84.43
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	84.43
3e49_A	311	Uncharacterized protein DUF849 with A TIM barrel;	84.41
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	84.37
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	84.34
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	84.33
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	84.25
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	84.22
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	84.03
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	84.02
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	83.99
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	83.88
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	83.75
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	83.72
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	83.69
4f6c_A	427	AUSA reductase domain protein; thioester reductase	83.58
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	83.55
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	83.43
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	83.39
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	83.31
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	83.27
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	83.24
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	83.11
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	82.94
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	82.93
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	82.91
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	82.88
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	82.8
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	82.74
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	82.61
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	82.59
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	82.57
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	82.54
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	82.35
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	82.33
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	82.31
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	82.04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	82.03
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	81.98
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	81.97
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	81.93
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	81.81
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	81.73
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	81.71
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	81.65
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	81.46
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	81.29
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	81.24
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	81.13
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	81.07
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	81.01
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	80.99
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	80.96
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	80.94
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	80.81
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	80.44
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	80.36
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	80.21
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	80.19
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	80.03
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	80.02

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=100.00  E-value=5.7e-97  Score=773.06  Aligned_cols=395  Identities=50%  Similarity=0.865  Sum_probs=355.8

Q ss_pred             CCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH
Q 015614            8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus         8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      +|+|+||+||++++++|++.+++++.+.|+|+||||+|+|.+.++.++++.+++..++|+|||+|+++|||.++.++++|
T Consensus         2 ~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRvD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   81 (523)
T 2o7s_A            2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENER   81 (523)
T ss_dssp             CSCCEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEEGGGCSSCCHHHHHHHHHHHCSSCEEEECCBGGGTSSBCSCHHHH
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHHhhhcCCCEEEEEEecccccChHHHHHHHHhcCCCcEEEEecccccCCCCCCCHHHH
Confidence            68999999999999999999999888899999999999999776556899998889999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015614           88 LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT  167 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~  167 (403)
                      +++|+.++++|+||||||++.+++.++++...++.++|||+|||||++||+++++.++|++|.++||||||+|+++++.+
T Consensus        82 ~~ll~~~~~~~~~yiDvEl~~~~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~~~~~~~~~~~~gaDivKia~~a~~~~  161 (523)
T 2o7s_A           82 RDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIA  161 (523)
T ss_dssp             HHHHHHHHHHTCSEEEEEHHHHHHHHHHTTTCCCTTCEEEEEEECSSCCCCHHHHHHHHHHHHTTTCSEEEEEEECSSGG
T ss_pred             HHHHHHHHHhCCCEEEEECCCchHHHHHHHHhccCCCEEEEEcccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Confidence            99999999999999999999998888777655556899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCC--CCCCCCCHHHHHhhhhhccccccceEEeeec
Q 015614          168 EIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGT--PVLGLPTVESLRQTYKVEHINADTKVFGLIS  245 (403)
Q Consensus       168 D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~--sApGQ~~~~~l~~~~~~~~~~~~~~~~~liG  245 (403)
                      |+++|++++.+.+.|+|+|+||+.|++||+++++|||++||++++.+  +||||+++++++++|++.+++.++++|||||
T Consensus       162 D~~~l~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lt~~~l~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~~~~viG  241 (523)
T 2o7s_A          162 DVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG  241 (523)
T ss_dssp             GHHHHHHHHHHCSSCEEEEEESGGGTHHHHCTTTTTCSEEECBSSTTCCSSTTCCBHHHHHHTSCGGGCCTTCEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCEEEEEcCCCCchhhhhhhhcCCceeecCCCccccCCCCCCcHHHHHHHHhhhhccccceEEEEEC
Confidence            99999999988899999999999999999999999999999999866  9999999999999999999998899999999


Q ss_pred             cCCcccCCHHHHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhhccceeEEEE
Q 015614          246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIR  325 (403)
Q Consensus       246 ~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~  325 (403)
                      +||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||+++++|+|++++.|+.+||||||++
T Consensus       242 ~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~ld~~~~~A~~iGAvNti~~  321 (523)
T 2o7s_A          242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILR  321 (523)
T ss_dssp             SSCTTCCHHHHHHHHHHHTTCSEEEEEEECSCHHHHHHHTCSTTEEEEEECTTCHHHHHHHCSEECHHHHHHTCCSEEEE
T ss_pred             CCccCCccHHHHHHHHHHcCCCcEEEeEEcchHHHHHHHHhcCCCCEEEECCCCHHHHHHHhcccCHHHHHhCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          326 RPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       326 ~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +..+|+|+||||||.||+.+|+..+...+...........+++++++|+||||+|||++++|.+.|++|+++||+.+
T Consensus       322 ~~~~gk~~g~nTD~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~  398 (523)
T 2o7s_A          322 RKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE  398 (523)
T ss_dssp             CTTTCCEEEECCHHHHHHHHHHHHC-------------------CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHH
T ss_pred             ecCCCeEEEEcCCHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            62278999999999999999987542111000000001235688999999999999999999999999999999854

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=100.00  E-value=7.6e-58  Score=436.14  Aligned_cols=231  Identities=21%  Similarity=0.344  Sum_probs=207.9

Q ss_pred             cCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc----hHHHHHHhcC-CCcEEEEeecCCCCCC
Q 015614            5 NITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG----KDLEIILTKK-PLPVLIVYRPKWAGGL   79 (403)
Q Consensus         5 ~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~~~eGG~   79 (403)
                      .+-.++|+|||||++++.+|++.+++.+...|+|+||||+|+|.+.++.    +++..+|+.. ++|+|||+|+++|||.
T Consensus        14 ~ig~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~   93 (258)
T 4h3d_A           14 TIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGE   93 (258)
T ss_dssp             EETSSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCS
T ss_pred             EeCCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCC
Confidence            3456799999999999999999999999889999999999999987543    3455566554 7999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC-CcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614           80 YEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      ++.++++|+++++.+++.| +||||||+..+++..+++. ..+++++|||+|||||++||+++++.+++.+|.++||||+
T Consensus        94 ~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~~gaDIv  173 (258)
T 4h3d_A           94 KLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLP  173 (258)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHHhCCCEE
Confidence            9999999999999999998 9999999999998888877 3567899999999999999999999999999999999999


Q ss_pred             EEEeecCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614          158 KLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       158 Kia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~  232 (403)
                      |+|+||++.+|+++|++++.+     .+.|+|+|+||+.|++||++++.|||++||+++++++||||+++++|+++|+.+
T Consensus       174 Kia~~~~~~~D~l~Ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~fGS~lTf~~~~~~sAPGQl~~~el~~~l~lL  253 (258)
T 4h3d_A          174 KIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLL  253 (258)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHHHTCSSCBEEEECTGGGGGGGTCHHHHCBCEEECBCC---CTTCCBHHHHHHHHHHH
T ss_pred             EEEEccCCHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChHHHHHHHHhCCceEeccCCCCCCCCCCCHHHHHHHHHHH
Confidence            999999999999999998754     378999999999999999999999999999999999999999999999999876


Q ss_pred             ccc
Q 015614          233 HIN  235 (403)
Q Consensus       233 ~~~  235 (403)
                      +.+
T Consensus       254 ~~~  256 (258)
T 4h3d_A          254 HKS  256 (258)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            543

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.5e-57  Score=431.33  Aligned_cols=228  Identities=19%  Similarity=0.284  Sum_probs=208.9

Q ss_pred             cCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc----hHHHHHHhcC-CCcEEEEeecCCCCCC
Q 015614            5 NITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG----KDLEIILTKK-PLPVLIVYRPKWAGGL   79 (403)
Q Consensus         5 ~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~~~eGG~   79 (403)
                      .+.+++|+||+||++++.+|++.+++++.+.|+|+||||+|+|.+.++.    +++..+|+.. ++|+|||+|+++|||.
T Consensus        14 ~~g~~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~   93 (257)
T 2yr1_A           14 WIGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPILFTIRSEREGGQ   93 (257)
T ss_dssp             EESSSSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCC
T ss_pred             eeCCCCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccccCcHHHHHHHHHHHHHhccCCCEEEEEeecccCCC
Confidence            4568899999999999999999999998889999999999999876542    3556777776 8999999999999999


Q ss_pred             C-CCCHHHHHHHHHHHHHcC-CcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCE
Q 015614           80 Y-EGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADI  156 (403)
Q Consensus        80 ~-~~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi  156 (403)
                      + +.++++|+++++.++++| +||||||+..++ ..+++. ..+++++|||+|||||++||+.++|.++|++|+++||||
T Consensus        94 ~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~gaDi  172 (257)
T 2yr1_A           94 PIPLNEAEVRRLIEAICRSGAIDLVDYELAYGE-RIADVRRMTEECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADI  172 (257)
T ss_dssp             CCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGTT-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSE
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCh-hHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence            9 899999999999999999 999999999877 666665 346789999999999999999999999999999999999


Q ss_pred             EEEEeecCCHhHHHHHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614          157 IKLVFSVNDITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       157 vKia~~~~~~~D~~~ll~~~~~~----~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~  232 (403)
                      +|+|+||++.+|++++++++.+.    +.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++++.+
T Consensus       173 vKia~~a~s~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~~sAPGQl~~~el~~~l~~l  252 (257)
T 2yr1_A          173 AKVAVMPKSPEDVLVLLQATEEARRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSIL  252 (257)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHHHCSSCEEEEECTTTTHHHHHHGGGGTBCEEECBSSSCSSTTCCBHHHHHHHHHHH
T ss_pred             EEEEeccCCHHHHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHhCCceEecCCCCCCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999997653    68999999999999999999999999999999999999999999999999865


Q ss_pred             c
Q 015614          233 H  233 (403)
Q Consensus       233 ~  233 (403)
                      +
T Consensus       253 ~  253 (257)
T 2yr1_A          253 Q  253 (257)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=100.00  E-value=1.7e-57  Score=437.09  Aligned_cols=229  Identities=23%  Similarity=0.340  Sum_probs=211.0

Q ss_pred             cCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc----hHHHHHHhcC-CCcEEEEeecCCCCCC
Q 015614            5 NITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG----KDLEIILTKK-PLPVLIVYRPKWAGGL   79 (403)
Q Consensus         5 ~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~~~eGG~   79 (403)
                      .+..++|+|||||++++.+|++.+++++...|+|+||||+|+|.+.++.    +++..+|+.. ++|+|||+|+++|||.
T Consensus        34 ~~g~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~  113 (276)
T 3o1n_A           34 VVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGE  113 (276)
T ss_dssp             EETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCS
T ss_pred             EeCCCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCC
Confidence            4567899999999999999999999998668999999999999977652    4556677776 8999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC-CcEEEEeccccchHHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614           80 YEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      ++.++++|+++++.++++| +||||||+..+++.+++++. ++++++|||+|||||++||+.++|.++|++|+++||||+
T Consensus       114 ~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~GaDIv  193 (276)
T 3o1n_A          114 QALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIP  193 (276)
T ss_dssp             BCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHHcCCCEE
Confidence            9999999999999999999 99999999999888888873 467899999999999999999999999999999999999


Q ss_pred             EEEeecCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614          158 KLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       158 Kia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~  232 (403)
                      |||+||++.+|+++|++++.+     .++|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++++.+
T Consensus       194 Kia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~vTf~~l~~~sAPGQl~~~~l~~~l~~l  273 (276)
T 3o1n_A          194 KIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTIL  273 (276)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHHHTCCSCCEEEECSGGGTHHHHCHHHHTCCEEECBSSCCSSTTCCBHHHHHHHHHHH
T ss_pred             EEEecCCChHHHHHHHHHHHHHHhcCCCCCEEEEECCCchhhHHHHHHHhCCceEecCCCCCCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999754     578999999999999999999999999999999999999999999999999865


Q ss_pred             c
Q 015614          233 H  233 (403)
Q Consensus       233 ~  233 (403)
                      +
T Consensus       274 ~  274 (276)
T 3o1n_A          274 H  274 (276)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=100.00  E-value=7e-57  Score=425.05  Aligned_cols=222  Identities=21%  Similarity=0.343  Sum_probs=198.2

Q ss_pred             CeeEEEeccc-CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---chHHHHHHhcC-CCcEEEEeecCCCCCCCCCCH
Q 015614           10 TTMICAPLMA-QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDE   84 (403)
Q Consensus        10 ~~~icv~l~~-~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~   84 (403)
                      +|+||+||++ ++.+|++.+++.+.+.|+|+||||+|+|.+.+.   .++++.+|+.. ++|+|||+|+++|||.++.++
T Consensus         3 ~p~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~   82 (238)
T 1sfl_A            3 HVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTN   82 (238)
T ss_dssp             CCEEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCH
T ss_pred             CCeEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecccccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCH
Confidence            5899999999 999999999998888899999999999987642   23445566655 799999999999999999999


Q ss_pred             HHHHHHHHHHHHc-CCcEEEEeccc--cchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614           85 HKRLEALHLAEDL-GADYVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        85 ~~~~~ll~~~~~~-g~~yvDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      ++|+++++.++++ ++||||||+..  +++..+++. ..+++++|||+|||||++||+.+++.++|++|+++||||+|+|
T Consensus        83 ~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKia  162 (238)
T 1sfl_A           83 DSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLA  162 (238)
T ss_dssp             HHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEEE
Confidence            9999999999998 59999999999  777777776 4567899999999999999999999999999999999999999


Q ss_pred             eecCCHhHHHHHHHHhcc----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhh
Q 015614          161 FSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV  231 (403)
Q Consensus       161 ~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~  231 (403)
                      +||++.+|++++++++.+    .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++|+.
T Consensus       163 ~~a~~~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~~sAPGQl~~~el~~~l~~  237 (238)
T 1sfl_A          163 VMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL  237 (238)
T ss_dssp             ECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCCSSTTCCBHHHHHHHHTT
T ss_pred             ecCCCHHHHHHHHHHHHHHhhcCCCCEEEEECCCCchHHHHHHHHhCCCeeecCCCCCCCCCCCCHHHHHHHHHh
Confidence            999999999999999765    47899999999999999999999999999999999999999999999999864

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans}

Probab=100.00  E-value=2.3e-55  Score=417.78  Aligned_cols=222  Identities=18%  Similarity=0.266  Sum_probs=186.7

Q ss_pred             cCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHh-cCCCcEEEEeecCCCCCCCCCC
Q 015614            5 NITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT-KKPLPVLIVYRPKWAGGLYEGD   83 (403)
Q Consensus         5 ~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~-~~~~PiI~T~R~~~eGG~~~~~   83 (403)
                      .+.+++|+|||||++++.+|++ ++..+...|+|+||||+|+|...+..+...++++ ..++|+|||+|+++|||.++.+
T Consensus        29 ~~g~g~pkIcvpl~~~t~~e~~-~~~~~~~~gaD~VElRvD~l~~~~~~~v~~~l~~~~~~~PiI~T~Rt~~EGG~~~~~  107 (259)
T 3l9c_A           29 QMGRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSGHEVIFTLRTEKEGGNISLS  107 (259)
T ss_dssp             -----CCEEEEEECCSSHHHHH-HCCCTTCCTTCEEEEEGGGSCGGGHHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCC
T ss_pred             EECCCCcEEEEEecCCCHHHHH-HHHHhhccCCCEEEEEeccccchhHHHHHHHHHHhcCCCcEEEEEeehhhCCCCCCC
Confidence            3456789999999999999997 5555556799999999999986432222334444 4689999999999999999999


Q ss_pred             HHHHHHHHHHHHH-cCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015614           84 EHKRLEALHLAED-LGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS  162 (403)
Q Consensus        84 ~~~~~~ll~~~~~-~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~  162 (403)
                      +++|+++|+.+++ +++||||||++.+++.+++++    +.+|||+|||||++||+  +|.++|++|.++||||+|||+|
T Consensus       108 ~~~y~~ll~~~~~~~~~dyIDVEl~~~~~~~~~l~----~~~kiI~S~Hdf~~tp~--el~~~~~~~~~~GaDIvKia~~  181 (259)
T 3l9c_A          108 NEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DFSNLILSYHNFEETPE--NLMEVFSELTALAPRVVKIAVM  181 (259)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEEHHHHGGGGGGGT----TCSSEEEEEEESSCCCT--THHHHHHHHHHTCCSEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECcCCHHHHHHHH----hcCeEEEEeccCCCCHH--HHHHHHHHHHHcCCCEEEEEec
Confidence            9999999999998 789999999999887776663    45699999999999998  8999999999999999999999


Q ss_pred             cCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhcc
Q 015614          163 VNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH  233 (403)
Q Consensus       163 ~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~~  233 (403)
                      |++.+|+++|++++.+     .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++++.++
T Consensus       182 a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~lTf~~l~~~sAPGQl~~~el~~~l~~l~  257 (259)
T 3l9c_A          182 PKNEQDVLDLMNYTRGFKTLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQESAPGQISLADMRKIKEVLD  257 (259)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCTTSEEEEEECTGGGHHHHHTHHHHTBSEEECBC-------CCBHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhccCCCCEEEEECCCCcccHHHHHHHhCCccccccCCCCCCCCCCCHHHHHHHHHHHc
Confidence            9999999999999754     3689999999999999999999999999999999999999999999999998653

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}

Probab=100.00  E-value=3e-55  Score=411.86  Aligned_cols=219  Identities=17%  Similarity=0.225  Sum_probs=187.2

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc-C-CCcEEEEeecCCCCCCCCCCHHH
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-K-PLPVLIVYRPKWAGGLYEGDEHK   86 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~-~~PiI~T~R~~~eGG~~~~~~~~   86 (403)
                      |+|+|||||++++.+|++.+++++ ..++|+||||+|+|.+.+ .+.+....+. . ++|+|||+|+++|||.++.++++
T Consensus         2 ~~~~Icvpi~~~t~~e~~~~~~~~-~~~~D~vElRvD~l~~~~-~~~v~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~   79 (231)
T 2ocz_A            2 NAMRIVAPVMPRHFDEAQAIDISK-YEDVNLIEWRADFLPKDE-IVAVAPAIFEKFAGKEIIFTLRTVQEGGNITLSSQE   79 (231)
T ss_dssp             -CCEEEEEECCSSHHHHHTCCGGG-GTTCSEEEEEGGGSCGGG-HHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCCHHH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHHh-ccCCCEEEEEeccccccC-HHHHHHHHHHHcCCCcEEEEEeecccCCCCCCCHHH
Confidence            789999999999999999999886 458999999999998654 3344433222 3 39999999999999999999999


Q ss_pred             HHHHHHHHHHcC-CcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015614           87 RLEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND  165 (403)
Q Consensus        87 ~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~  165 (403)
                      |+++++.++++| +||||||+..+++.++.   .+ +.+|||+|||||++||  +++.++|++|+++||||+|||+||++
T Consensus        80 ~~~ll~~~~~~g~~d~iDvEl~~~~~~i~~---~~-~~~kvI~S~Hdf~~tp--~el~~~~~~~~~~gaDivKia~~a~~  153 (231)
T 2ocz_A           80 YVDIIKEINAIYNPDYIDFEYFTHKSVFQE---ML-DFPNLILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQS  153 (231)
T ss_dssp             HHHHHHHHHHHHCCSEEEEETTTTGGGGGG---GT-TCSSEEEEEEESSCCC--TTHHHHHHHHHHTCCSEEEEEECCSS
T ss_pred             HHHHHHHHHHcCCCCEEEEECCCCHHHHHH---hh-cCCeEEEEecCCCCCH--HHHHHHHHHHHHcCCCEEEEEeecCC
Confidence            999999999999 99999999998765443   33 4499999999999999  89999999999999999999999999


Q ss_pred             HhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhcccc
Q 015614          166 ITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN  235 (403)
Q Consensus       166 ~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~~~~  235 (403)
                      .+|+++|++++.+     .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++++.++.+
T Consensus       154 ~~D~l~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~~sAPGQl~~~el~~~l~~l~~~  228 (231)
T 2ocz_A          154 EQDVLDLMNYTRGFKTLNPEQEFATISMGKLGRLSRFAGDVIGSSWTYVSLDHVSGPGQVTLNDMKRIIEVLEMD  228 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHGGGGGCHHHHTCCEEECBC------CCCBHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHhhccCCCCEEEEEcCCCchhHHHHHHHhCCceEeccCCCCCCCCCCCHHHHHHHHHHhhhh
Confidence            9999999999754     367999999999999999999999999999999989999999999999999866543

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A

Probab=100.00  E-value=4e-53  Score=394.48  Aligned_cols=212  Identities=25%  Similarity=0.343  Sum_probs=185.6

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc---hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL   88 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (403)
                      +||+||++++.+|++.+++.   .|+|+||||+|+|.+.+..   +++..+|+. .+|+|||+|+++|||.   ++++|+
T Consensus         2 ~icv~l~~~~~~~~~~~~~~---~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~-~~PiI~T~R~~~eGG~---~~~~~~   74 (219)
T 2egz_A            2 LIAVPLDDTNFSENLKKAKE---KGADIVELRVDQFSDTSLNYVKEKLEEVHSQ-GLKTILTIRSPEEGGR---EVKNRE   74 (219)
T ss_dssp             EEEEEECSTTHHHHHHHHHH---HTCSEEEEEGGGCSCCCHHHHHHHHHHHHHT-TCEEEEECCCGGGTCC---CCTTHH
T ss_pred             EEEEEeCCCCHHHHHHHHHH---cCCCEEEEEeccccccCHHHHHHHHHHHHhc-CCcEEEEEeehhccCC---CHHHHH
Confidence            59999999999999877765   4899999999999876532   356667765 7999999999999999   678999


Q ss_pred             HHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015614           89 EALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT  167 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~  167 (403)
                      ++++.++++ +||||||++.+. ..+.+. ..+..++|||+|||||++||+.+++.++|++|+++|| |+|+|+||++.+
T Consensus        75 ~ll~~~~~~-~d~iDvEl~~~~-~~~~l~~~~~~~g~kvI~S~Hdf~~tp~~~el~~~~~~~~~~ga-ivKia~~a~~~~  151 (219)
T 2egz_A           75 ELFEELSPL-SDYTDIELSSRG-LLVKLYNITKEAGKKLIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSYE  151 (219)
T ss_dssp             HHHHHHTTT-SSEEEEETTCHH-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTS-EEEEEEECSSHH
T ss_pred             HHHHHHHhc-CCEEEEEccCCc-cHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCC-EEEEEEccCCHH
Confidence            999999999 999999999851 111222 2334679999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhcc
Q 015614          168 EIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH  233 (403)
Q Consensus       168 D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~~  233 (403)
                      |++++++++.+.+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++++.++
T Consensus       152 D~l~ll~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~~sAPGQl~~~el~~~l~~l~  217 (219)
T 2egz_A          152 DVARLLCISRQVEGEKILISMGDYGKISRLAGYVFGSVITYCSLEKAFAPGQIPLEEMVELRKKFY  217 (219)
T ss_dssp             HHHHHHHHHTTSCSCBEEEEESSGGGGHHHHGGGGTBCEEECBCC---CTTCCBHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCcchhHHHHHHHhCCceEecCCCCCCCCCCCCHHHHHHHHHHhc
Confidence            999999999988999999999999999999999999999999999889999999999999998654

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus}

Probab=100.00  E-value=3.8e-51  Score=374.54  Aligned_cols=193  Identities=24%  Similarity=0.331  Sum_probs=178.4

Q ss_pred             EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (403)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (403)
                      +|||++++.+| +.+++.     +|+||||+|+|.+.        +| ..++|+|||+|+++|||.++.++++|+++++.
T Consensus         2 ~vpl~~~t~~~-~~~~~~-----aD~vElRvD~l~~~--------lr-~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   66 (196)
T 2ox1_A            2 KLVATLSSPEE-LELAEK-----ADVVELRIDLFDFS--------GA-RVDKEKILTCRRVSDGGKFEGDERERIEKMKR   66 (196)
T ss_dssp             EEEEEECSHHH-HHHTTT-----CSEEEEETTTSCCT--------TS-CCCSEEEEECCBGGGTSSBCSCHHHHHHHHHH
T ss_pred             eeeEcCCCHHH-HHHHhc-----CCEEEEEEchhhhh--------HH-hcCCcEEEEEeecccCCCCCCCHHHHHHHHHH
Confidence            79999999999 876543     89999999999864        44 56899999999999999999999999999999


Q ss_pred             HHHcCC-cEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHH
Q 015614           94 AEDLGA-DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARI  172 (403)
Q Consensus        94 ~~~~g~-~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l  172 (403)
                      ++++|+ ||||||++.+++.+       ++++|||+|||||++||+|+++.++++  +++| ||+|+|+||++.+|++++
T Consensus        67 ~~~~g~~d~iDvEl~~~~~~i-------~~~~kvI~S~Hdf~~tp~~~~l~~~~~--~~~g-DivKia~~a~~~~D~l~l  136 (196)
T 2ox1_A           67 AFDSLNPDYVDLESDLPDSAF-------DFNCRIIESYHNFIRTPDYSELKGIVE--GRRG-DLVKIATMGKSKRDVETI  136 (196)
T ss_dssp             HHHHHCCSEEEEETTSCGGGC-------CCSSEEEEEEEESSCCCCHHHHHHHHH--TCCS-SEEEEEEECCSHHHHHHH
T ss_pred             HHHhCCCcEEEEECCCCHhHH-------hCCCEEEEEecCCCCCcCHHHHHHHHH--HHcC-CEEEEEEcCCCHHHHHHH
Confidence            999997 99999999887652       278999999999999999999999999  8899 999999999999999999


Q ss_pred             HHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614          173 FQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       173 l~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~  232 (403)
                      ++++.+.+ |+|+|+||+.|++||+++++|||++||+++++++||||+++++++++++.+
T Consensus       137 l~~~~~~~-p~I~~~MG~~G~~SRi~~~~~gs~~t~~~~~~~sAPGQl~~~el~~~l~~l  195 (196)
T 2ox1_A          137 VRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYCYVGSPKAPGQISLDDAREIISRL  195 (196)
T ss_dssp             HHHHHHCS-SEEEEEESGGGTHHHHHHHHTTCSEEEEESSSCSSTTCCBHHHHHHHHHHH
T ss_pred             HHHHhhCC-CeEEEEcCCCchhHHHhHhhhCCceEeccCCCCCCCCCCCHHHHHHHHHHh
Confidence            99988776 999999999999999999999999999999888999999999999998754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=100.00  E-value=1e-45  Score=361.42  Aligned_cols=154  Identities=30%  Similarity=0.522  Sum_probs=141.8

Q ss_pred             ccccccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHccccc
Q 015614          232 EHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE  309 (403)
Q Consensus       232 ~~~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~  309 (403)
                      ..++.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++|+|+
T Consensus        25 ~~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~  104 (312)
T 3t4e_A           25 MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDE  104 (312)
T ss_dssp             -----CCEEEEEEESCCTTCSHHHHHHHHHHHHTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSHHHHGGGCSE
T ss_pred             cccCCCceEEEEECCCccccccHHHHHHHHHHcCCCcEEEeEecCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHhhh
Confidence            34667789999999999999999999999999999999999988  5899999999889999999999999999999999


Q ss_pred             CCHHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHH
Q 015614          310 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS  389 (403)
Q Consensus       310 ~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~  389 (403)
                      +|+.|+.|||||||+++  +|+|+||||||.||+.+|++.             +..+++++++|+||||+|||++++|.+
T Consensus       105 ls~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-------------~~~l~gk~~lVlGAGGaaraia~~L~~  169 (312)
T 3t4e_A          105 LTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-------------GFDMRGKTMVLLGAGGAATAIGAQAAI  169 (312)
T ss_dssp             ECHHHHHHTCCSEEEEE--TTEEEEECHHHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             cCHHHHHhCceeEEEec--CCEEEEeCCcHHHHHHHHHhc-------------CCCcCCCEEEEECcCHHHHHHHHHHHH
Confidence            99999999999999987  999999999999999998753             145678999999999999999999999


Q ss_pred             CCC-eEEEEecC
Q 015614          390 RGA-RVVIFDID  400 (403)
Q Consensus       390 ~g~-~i~v~nR~  400 (403)
                      +|+ +|+|+||+
T Consensus       170 ~G~~~v~v~nRt  181 (312)
T 3t4e_A          170 EGIKEIKLFNRK  181 (312)
T ss_dssp             TTCSEEEEEECS
T ss_pred             cCCCEEEEEECC
Confidence            999 89999999

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=100.00  E-value=4.5e-45  Score=352.47  Aligned_cols=154  Identities=26%  Similarity=0.432  Sum_probs=141.2

Q ss_pred             cccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614          235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (403)
Q Consensus       235 ~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~  312 (403)
                      ..++++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|+|+|||||||+++++|+|++|+
T Consensus         5 ~~~m~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~ld~l~~   84 (281)
T 3o8q_A            5 ASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTE   84 (281)
T ss_dssp             ---CEEEEEECCSSSCCCHHHHHHHHHHHTTCCEEEEEECCCTTCHHHHHHHHHHTTCCEEEECTTSHHHHHHHCSEECH
T ss_pred             cccccEEEEECCCCCccCcHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECCccHHHHHHHHhhcCH
Confidence            44578999999999999999999999999999999999987  5899999999888999999999999999999999999


Q ss_pred             HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (403)
Q Consensus       313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~  392 (403)
                      .|+.+||||||++.+ ||+|+||||||.||+.+|++.             +..+++++++|+|+||+||+++++|.+.|+
T Consensus        85 ~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~L~~~-------------~~~l~~k~vlvlGaGg~g~aia~~L~~~G~  150 (281)
T 3o8q_A           85 RARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-------------QVLLKGATILLIGAGGAARGVLKPLLDQQP  150 (281)
T ss_dssp             HHHHHTCCSEEEECT-TSCEEEECCHHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHHHHHHHHTTCC
T ss_pred             HHHhhCeeeEEEEcC-CCcEEEEecHHHHHHHHHHHh-------------CCCccCCEEEEECchHHHHHHHHHHHhcCC
Confidence            999999999999852 899999999999999998653             145678999999999999999999999998


Q ss_pred             -eEEEEecCCC
Q 015614          393 -RVVIFDIDFG  402 (403)
Q Consensus       393 -~i~v~nR~~~  402 (403)
                       +|+|+||+.+
T Consensus       151 ~~v~v~~R~~~  161 (281)
T 3o8q_A          151 ASITVTNRTFA  161 (281)
T ss_dssp             SEEEEEESSHH
T ss_pred             CeEEEEECCHH
Confidence             9999999864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=100.00  E-value=1.9e-45  Score=352.02  Aligned_cols=148  Identities=29%  Similarity=0.557  Sum_probs=139.5

Q ss_pred             cceEEeeeccCCcccCCHHHHHHHH----HhcCCCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614          237 DTKVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (403)
Q Consensus       237 ~~~~~~liG~pi~hS~SP~ihn~~~----~~~gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~  312 (403)
                      ++++|||||+||+||+||.|||++|    +++|+|+.|.++++++++++++.++.++|.|+|||||||+++++++|++|+
T Consensus         2 k~~~~~viG~Pi~hS~SP~~hn~~f~~~~~~~gl~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~   81 (269)
T 3phh_A            2 KLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKG   81 (269)
T ss_dssp             CEEEEEEEESSCTTCCHHHHHHHHHHHHHHHHSSEEEEEEEECCSSSCHHHHHHHTTEEEEEECTTCHHHHHHHSSEECG
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHHHHHcCCCCEEeeEEhhhHHHHHHHHhhCCCCEEEEccccHHHHHHHHhhcCH
Confidence            4789999999999999999999999    999999999999999999999999889999999999999999999999999


Q ss_pred             HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (403)
Q Consensus       313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~  392 (403)
                      .|+.+||||||+++  +|+|+||||||.||+.+|++.                 .+++++|+|+||+||+++++|.+.|.
T Consensus        82 ~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-----------------~~k~vlvlGaGGaaraia~~L~~~G~  142 (269)
T 3phh_A           82 IALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQK-----------------NYQNALILGAGGSAKALACELKKQGL  142 (269)
T ss_dssp             GGGGTTCCCEEEEE--TTEEEEECCHHHHHHHHCC--------------------CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             HHHHhCceeEEEee--CCEEEEecChHHHHHHHHHHc-----------------CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            99999999999987  999999999999999997531                 17899999999999999999999999


Q ss_pred             eEEEEecCCCC
Q 015614          393 RVVIFDIDFGT  403 (403)
Q Consensus       393 ~i~v~nR~~~k  403 (403)
                      +|+|+||+.+|
T Consensus       143 ~v~V~nRt~~k  153 (269)
T 3phh_A          143 QVSVLNRSSRG  153 (269)
T ss_dssp             EEEEECSSCTT
T ss_pred             EEEEEeCCHHH
Confidence            99999999875

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=3.2e-45  Score=353.09  Aligned_cols=153  Identities=29%  Similarity=0.413  Sum_probs=142.9

Q ss_pred             cccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614          235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (403)
Q Consensus       235 ~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~  312 (403)
                      +.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||||||+++++++|++|+
T Consensus         2 s~~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~v~~l~~~~~~G~nVTiP~K~~v~~~ld~ls~   81 (282)
T 3fbt_A            2 SLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCGGLNVTIPYKVEVMKELYEISE   81 (282)
T ss_dssp             -CCCEEEEEEESSCCCCHHHHHHHHHHHHHTCCEEEEEEECCGGGHHHHHHHHHHTTCCEEEECTTCTTGGGGGCSEECH
T ss_pred             CCcceEEEEECCCccccchHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhcCH
Confidence            45689999999999999999999999999999999999988  5899999998888999999999999999999999999


Q ss_pred             HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (403)
Q Consensus       313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~  392 (403)
                      .|+.+||||||+++  +|+|+||||||.||+.+|++.             +..+++++++|+|+||+||+++++|.++|+
T Consensus        82 ~A~~iGAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~-------------~~~~~~k~vlvlGaGGaaraia~~L~~~G~  146 (282)
T 3fbt_A           82 KARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSKF-------------RVEIKNNICVVLGSGGAARAVLQYLKDNFA  146 (282)
T ss_dssp             HHHHHTCCCEEEEC--SSCEEEECCHHHHHHHHHHHT-------------TCCCTTSEEEEECSSTTHHHHHHHHHHTTC
T ss_pred             HHHHcCCcceEEee--CCEEEeeCCcHHHHHHHHHHc-------------CCCccCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            99999999999987  899999999999999999753             145678999999999999999999999999


Q ss_pred             -eEEEEecCCC
Q 015614          393 -RVVIFDIDFG  402 (403)
Q Consensus       393 -~i~v~nR~~~  402 (403)
                       +|+|+|||.+
T Consensus       147 ~~v~v~nRt~~  157 (282)
T 3fbt_A          147 KDIYVVTRNPE  157 (282)
T ss_dssp             SEEEEEESCHH
T ss_pred             CEEEEEeCCHH
Confidence             9999999864

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=100.00  E-value=4.8e-45  Score=352.76  Aligned_cols=152  Identities=28%  Similarity=0.445  Sum_probs=141.6

Q ss_pred             cceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecC-------cccHHHHHHHhcCCCCceEEecccchHHHHccccc
Q 015614          237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMF-------VDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE  309 (403)
Q Consensus       237 ~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~-------~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~  309 (403)
                      +|++|||||+||+||+||.|||++|+++|+|+.|.+++       .++++++++.++.++|.|+|||||||+++++|+|+
T Consensus         3 ~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~   82 (283)
T 3jyo_A            3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_dssp             CCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHHTTCCEEEECTTCTTTTGGGSSE
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhhCCCCEEEECcccHHHHHHHhhh
Confidence            57899999999999999999999999999999999994       36899999999889999999999999999999999


Q ss_pred             CCHHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHH
Q 015614          310 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS  389 (403)
Q Consensus       310 ~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~  389 (403)
                      +|+.|+.+||||||++++ +|+|+||||||.||+.+|++..             ..+++++++|+|+||+||+++++|.+
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~-------------~~l~~k~vlVlGaGG~g~aia~~L~~  148 (283)
T 3jyo_A           83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-------------PNAKLDSVVQVGAGGVGNAVAYALVT  148 (283)
T ss_dssp             ECHHHHHHTCCCEEEECT-TSCEEEECHHHHHHHHHHHHHC-------------TTCCCSEEEEECCSHHHHHHHHHHHH
T ss_pred             CCHHHHHhCcceEEEECC-CCeEEEecCCHHHHHHHHHHhC-------------cCcCCCEEEEECCcHHHHHHHHHHHH
Confidence            999999999999999873 8999999999999999997642             34678999999999999999999999


Q ss_pred             CCC-eEEEEecCCC
Q 015614          390 RGA-RVVIFDIDFG  402 (403)
Q Consensus       390 ~g~-~i~v~nR~~~  402 (403)
                      +|+ +|+|+||+.+
T Consensus       149 ~G~~~v~i~~R~~~  162 (283)
T 3jyo_A          149 HGVQKLQVADLDTS  162 (283)
T ss_dssp             TTCSEEEEECSSHH
T ss_pred             CCCCEEEEEECCHH
Confidence            999 8999999864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=100.00  E-value=7.2e-45  Score=349.51  Aligned_cols=149  Identities=26%  Similarity=0.392  Sum_probs=139.1

Q ss_pred             eEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhh
Q 015614          239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (403)
Q Consensus       239 ~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  316 (403)
                      .+|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||+++++++|++|+.|+.
T Consensus         3 ~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~   82 (272)
T 3pwz_A            3 DRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNITAPFKLRAFELADRRSERAQL   82 (272)
T ss_dssp             EEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcCCcccHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHHhhCCHHHHH
Confidence            5899999999999999999999999999999999987  58999999998889999999999999999999999999999


Q ss_pred             ccceeEEEEeccCCeEEEEeccHHHHHHH-HHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC-eE
Q 015614          317 IAAVNTIIRRPSDGKLIGYNTDCEASITA-IEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RV  394 (403)
Q Consensus       317 igavNTi~~~~~~g~l~G~NTD~~G~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~-~i  394 (403)
                      +||||||+++  +|+|+||||||.||+.+ |++.             +..+++++++|+|+||+||+++++|.++|+ +|
T Consensus        83 iGAvNTv~~~--~g~l~G~NTD~~G~~~~lL~~~-------------~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v  147 (272)
T 3pwz_A           83 ARAANALKFE--DGRIVAENFDGIGLLRDIEENL-------------GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSEL  147 (272)
T ss_dssp             HTCCSEEEEE--TTEEEEECCHHHHHHHHHHTTS-------------CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEE
T ss_pred             hCccceEEcc--CCeEEEecCCHHHHHHHHHHHc-------------CCCccCCEEEEECccHHHHHHHHHHHHcCCCEE
Confidence            9999999877  89999999999999999 7432             245679999999999999999999999998 99


Q ss_pred             EEEecCCC
Q 015614          395 VIFDIDFG  402 (403)
Q Consensus       395 ~v~nR~~~  402 (403)
                      +|+||+.+
T Consensus       148 ~i~~R~~~  155 (272)
T 3pwz_A          148 VIANRDMA  155 (272)
T ss_dssp             EEECSCHH
T ss_pred             EEEeCCHH
Confidence            99999864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=100.00  E-value=4.8e-45  Score=351.36  Aligned_cols=149  Identities=26%  Similarity=0.516  Sum_probs=140.0

Q ss_pred             EEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhhc
Q 015614          240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAI  317 (403)
Q Consensus       240 ~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~i  317 (403)
                      +|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++|+|++|+.|+.+
T Consensus         2 ~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~i   81 (277)
T 3don_A            2 KFAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSV   81 (277)
T ss_dssp             EEEEEESSCTTCCHHHHHHHHHHHTTCCCEEEEEECCGGGGGGHHHHHHHTTCSEEEECTTCTTTTGGGCSEECHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECcCCHHHHHHHhhhCCHHHHHh
Confidence            599999999999999999999999999999999988  589999999988899999999999999999999999999999


Q ss_pred             cceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEE
Q 015614          318 AAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVI  396 (403)
Q Consensus       318 gavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~-~i~v  396 (403)
                      ||||||+++  +|+|+||||||.||+.+|++..             ..+++++++|+|+||+||+++++|.+.|+ +|+|
T Consensus        82 GAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~~-------------~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v  146 (277)
T 3don_A           82 GAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIY-------------EGIEDAYILILGAGGASKGIANELYKIVRPTLTV  146 (277)
T ss_dssp             TCCCEEEEE--TTEEEEECCHHHHHHHHHHHHS-------------TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEE
T ss_pred             CceeEEEec--CCEEEEECChHHHHHHHHHHhC-------------CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            999999997  9999999999999999997641             34678999999999999999999999999 9999


Q ss_pred             EecCCCC
Q 015614          397 FDIDFGT  403 (403)
Q Consensus       397 ~nR~~~k  403 (403)
                      +||+.+|
T Consensus       147 ~~R~~~~  153 (277)
T 3don_A          147 ANRTMSR  153 (277)
T ss_dssp             ECSCGGG
T ss_pred             EeCCHHH
Confidence            9999754

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=100.00  E-value=1.7e-44  Score=353.14  Aligned_cols=152  Identities=32%  Similarity=0.611  Sum_probs=143.3

Q ss_pred             ccccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCC
Q 015614          234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  311 (403)
Q Consensus       234 ~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~  311 (403)
                      ++.++++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||+++++++|++|
T Consensus        33 i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~ls  112 (315)
T 3tnl_A           33 ITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLS  112 (315)
T ss_dssp             CCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHHHHTTCCEEEECTTSTTTGGGGCSEEC
T ss_pred             cCCcccEEEEECCCccccccHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHhcC
Confidence            566789999999999999999999999999999999999987  489999999988999999999999999999999999


Q ss_pred             HHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCC
Q 015614          312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  391 (403)
Q Consensus       312 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g  391 (403)
                      +.|+.|||||||+++  +|+|+||||||.||+.+|++.             +..+++|+++|+|+||+|||++++|.++|
T Consensus       113 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-------------~~~l~gk~~lVlGaGG~g~aia~~L~~~G  177 (315)
T 3tnl_A          113 PAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA-------------GHDIIGKKMTICGAGGAATAICIQAALDG  177 (315)
T ss_dssp             HHHHHHTCCSEEEEE--TTEEEEECCHHHHHHHHHHHT-------------TCCCTTSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             HHHHHhCccceEEec--CCEEEEeCCCHHHHHHHHHHc-------------CCCccCCEEEEECCChHHHHHHHHHHHCC
Confidence            999999999999987  999999999999999999753             14578999999999999999999999999


Q ss_pred             C-eEEEEecC
Q 015614          392 A-RVVIFDID  400 (403)
Q Consensus       392 ~-~i~v~nR~  400 (403)
                      + +|+|+||+
T Consensus       178 a~~V~i~nR~  187 (315)
T 3tnl_A          178 VKEISIFNRK  187 (315)
T ss_dssp             CSEEEEEECS
T ss_pred             CCEEEEEECC
Confidence            9 99999999

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=100.00  E-value=1.4e-42  Score=333.79  Aligned_cols=150  Identities=21%  Similarity=0.355  Sum_probs=140.0

Q ss_pred             eEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhh
Q 015614          239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (403)
Q Consensus       239 ~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  316 (403)
                      ++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.+++++|.|+|||||||+++++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~~~~~~l~~~i~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~   81 (272)
T 1p77_A            2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKL   81 (272)
T ss_dssp             EEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcccccCHHHHHHHHHHCCcCeEEEEEEcCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHHhhcCHHHHH
Confidence            6899999999999999999999999999999999987  68999999998889999999999999999999999999999


Q ss_pred             ccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEE
Q 015614          317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  396 (403)
Q Consensus       317 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v  396 (403)
                      +||||||+++ .+|+|+||||||.||+.+|++.             +..+++++++|+|+||+||+++++|.+.|.+|+|
T Consensus        82 igavNti~~~-~~g~l~g~NTD~~G~~~~L~~~-------------~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v  147 (272)
T 1p77_A           82 AEACNTLKKL-DDGKLYADNTDGIGLVTDLQRL-------------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVL  147 (272)
T ss_dssp             HTCCSEEEEC-TTSCEEEECCHHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEE
T ss_pred             hCCceEEEEc-cCCEEEEecCCHHHHHHHHHHh-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            9999999984 2899999999999999998763             1346789999999999999999999999999999


Q ss_pred             EecCCC
Q 015614          397 FDIDFG  402 (403)
Q Consensus       397 ~nR~~~  402 (403)
                      +||+.+
T Consensus       148 ~~R~~~  153 (272)
T 1p77_A          148 ANRTFS  153 (272)
T ss_dssp             EESSHH
T ss_pred             EECCHH
Confidence            999864

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=8.2e-43  Score=335.12  Aligned_cols=151  Identities=32%  Similarity=0.511  Sum_probs=140.2

Q ss_pred             ccccceE-EeeeccCCcccCCHHHHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614          234 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (403)
Q Consensus       234 ~~~~~~~-~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~  312 (403)
                      ++.+|++ |||||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||+++++++|++|+
T Consensus         2 i~~~t~~~~~viG~P--hS~SP~~hn~~~~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~~d~~~~   79 (271)
T 1npy_A            2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHP   79 (271)
T ss_dssp             CCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECH
T ss_pred             cCCCceEEEEEECCC--CcccHHHHHHHHHHcCCCcEEEeechhhHHHHHHHhccCCCCeEEECcCCHHHHHHHHHHhhH
Confidence            4567888 9999999  999999999999999999999999988999999999888999999999999999999999999


Q ss_pred             HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (403)
Q Consensus       313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~  392 (403)
                      .|+.+||||||+++  +|+|+||||||.||..+|++.    +         .. .+++++|||+||+||+++++|.++|+
T Consensus        80 ~A~~iGAvNTi~~~--~g~l~g~NTD~~G~~~~l~~~----~---------~~-~~~~vlvlGaGgaarav~~~L~~~G~  143 (271)
T 1npy_A           80 SAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKY----H---------LN-KNAKVIVHGSGGMAKAVVAAFKNSGF  143 (271)
T ss_dssp             HHHTTTCCCEEEEE--TTEEEEECHHHHHHHHHHHHT----T---------CC-TTSCEEEECSSTTHHHHHHHHHHTTC
T ss_pred             HHHHhCCCCceECc--CCEEEeecCCHHHHHHHHHHh----C---------CC-CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            99999999999987  999999999999999998653    1         22 46889999999999999999999998


Q ss_pred             -eEEEEecCCC
Q 015614          393 -RVVIFDIDFG  402 (403)
Q Consensus       393 -~i~v~nR~~~  402 (403)
                       +|+|+|||.+
T Consensus       144 ~~i~v~nRt~~  154 (271)
T 1npy_A          144 EKLKIYARNVK  154 (271)
T ss_dssp             CCEEEECSCHH
T ss_pred             CEEEEEeCCHH
Confidence             8999999864

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=100.00  E-value=1.9e-42  Score=329.40  Aligned_cols=139  Identities=29%  Similarity=0.465  Sum_probs=129.9

Q ss_pred             EEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhhc
Q 015614          240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAI  317 (403)
Q Consensus       240 ~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~i  317 (403)
                      +|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++ ++|+|+|||||||+++++|+|+ |+.|+.+
T Consensus         2 ~~~viG~pi~hS~SP~~hn~~~~~~gl~~~Y~~~~v~~~~l~~~~~~~~-~~~~G~nVT~P~K~~v~~~~d~-~~~A~~i   79 (253)
T 3u62_A            2 KFCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRIL-EEYDGFNATIPHKERVMRYVEP-SEDAQRI   79 (253)
T ss_dssp             EEEEEESSCTTCSHHHHHHHHHHHHTCCCEEEEEECCGGGHHHHHHHHH-HHCSEEEECTTCTTGGGGGSEE-CHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCCCCEEEeEecCHHHHHHHHHHHh-hCCCceeecCChHHHHHHHhCC-CHHHHHc
Confidence            699999999999999999999999999999999988  58999999998 9999999999999999999999 9999999


Q ss_pred             cceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEE
Q 015614          318 AAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVI  396 (403)
Q Consensus       318 gavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~-~i~v  396 (403)
                      ||||||++   +   +||||||.||+.+|++.               .+++ +++|+|+||+|||++++|.+.|+ +|+|
T Consensus        80 GAvNTi~~---~---~G~NTD~~G~~~~l~~~---------------~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v  137 (253)
T 3u62_A           80 KAVNCVFR---G---KGYNTDWVGVVKSLEGV---------------EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWV  137 (253)
T ss_dssp             TCCCEEET---T---EEECCHHHHHHHHTTTC---------------CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CcceEeec---C---EEEcchHHHHHHHHHhc---------------CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence            99999986   3   99999999999997431               2467 89999999999999999999999 9999


Q ss_pred             EecCCC
Q 015614          397 FDIDFG  402 (403)
Q Consensus       397 ~nR~~~  402 (403)
                      +||+.+
T Consensus       138 ~nR~~~  143 (253)
T 3u62_A          138 VNRTIE  143 (253)
T ss_dssp             EESCHH
T ss_pred             EeCCHH
Confidence            999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=2e-41  Score=325.46  Aligned_cols=150  Identities=28%  Similarity=0.434  Sum_probs=139.9

Q ss_pred             eEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhh
Q 015614          239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (403)
Q Consensus       239 ~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  316 (403)
                      ++|||||+||+||+||.|||++|+++|+++.|.++++  +++.++++.+++++|.|+|||||||+.+++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVT~P~K~~~~~~ld~~~~~A~~   81 (271)
T 1nyt_A            2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAAL   81 (271)
T ss_dssp             CSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             CEEEEECCCcccccCHHHHHHHHHHCCCCcEEEEEEcCHHHHHHHHHHHHhCCCCeEEEccCCHHHHHHHHhhcCHHHHH
Confidence            5799999999999999999999999999999999987  68999999998889999999999999999999999999999


Q ss_pred             ccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEE
Q 015614          317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  396 (403)
Q Consensus       317 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v  396 (403)
                      +||||||+++ .+|+|+||||||.||+.+|++. .            ..+++++++|+|+||+||+++++|.+.|.+|+|
T Consensus        82 igavNti~~~-~~g~l~G~ntD~~G~~~~L~~~-~------------~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v  147 (271)
T 1nyt_A           82 AGAVNTLMRL-EDGRLLGDNTDGVGLLSDLERL-S------------FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTI  147 (271)
T ss_dssp             HTCCSEEEEC-TTSCEEEECCHHHHHHHHHHHH-T------------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             hCCceEEEEc-CCCeEEEeCCCHHHHHHHHHhc-C------------cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence            9999999984 2899999999999999999763 1            346789999999999999999999999999999


Q ss_pred             EecCCC
Q 015614          397 FDIDFG  402 (403)
Q Consensus       397 ~nR~~~  402 (403)
                      +||+.+
T Consensus       148 ~~R~~~  153 (271)
T 1nyt_A          148 TNRTVS  153 (271)
T ss_dssp             ECSSHH
T ss_pred             EECCHH
Confidence            999854

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=100.00  E-value=2.8e-40  Score=321.70  Aligned_cols=161  Identities=34%  Similarity=0.513  Sum_probs=143.9

Q ss_pred             hhhhccccccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHc
Q 015614          228 TYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMK  305 (403)
Q Consensus       228 ~~~~~~~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~  305 (403)
                      -|++..++..+++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||+++++
T Consensus        13 ~~~~~~~~~~t~~~~viG~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~~~~~~l~~~v~~l~~~~~~G~nVTiP~K~~i~~   92 (297)
T 2egg_A           13 GENLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVTIPHKLAVIP   92 (297)
T ss_dssp             -------CCCCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTCHHHHHHHHHHHTCCEEEECTTCTTTTGG
T ss_pred             cccceecCCceeEEEEECCCcccccCHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCeEEECCcCHHHHHH
Confidence            366778888899999999999999999999999999999999999987  589999999988899999999999999999


Q ss_pred             ccccCCHHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHH
Q 015614          306 FCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAF  385 (403)
Q Consensus       306 ~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~  385 (403)
                      ++|++++.|+.+||||||+++  +|+|+|+||||.||..+|++..            ...+++++++|+|+||+||++++
T Consensus        93 ~ld~~~~~A~~iGavNti~~~--~g~l~g~nTd~~G~~~~l~~~~------------~~~l~~~~vlVlGaGg~g~aia~  158 (297)
T 2egg_A           93 FLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEEM------------NITLDGKRILVIGAGGGARGIYF  158 (297)
T ss_dssp             GCSEECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHT------------TCCCTTCEEEEECCSHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCCeEECc--CCeEeeccCCHHHHHHHHHHhC------------CCCCCCCEEEEECcHHHHHHHHH
Confidence            999999999999999999987  8999999999999999997641            02457899999999999999999


Q ss_pred             HHHHCCC-eEEEEecCCC
Q 015614          386 GAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       386 al~~~g~-~i~v~nR~~~  402 (403)
                      +|.+.|+ +|+|+||+.+
T Consensus       159 ~L~~~G~~~V~v~nR~~~  176 (297)
T 2egg_A          159 SLLSTAAERIDMANRTVE  176 (297)
T ss_dssp             HHHTTTCSEEEEECSSHH
T ss_pred             HHHHCCCCEEEEEeCCHH
Confidence            9999999 9999999864

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=8.9e-39  Score=309.45  Aligned_cols=153  Identities=42%  Similarity=0.614  Sum_probs=142.1

Q ss_pred             ccccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCC
Q 015614          234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  311 (403)
Q Consensus       234 ~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~  311 (403)
                      ++..+++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++..+|.|+|||||||+++++++|+++
T Consensus         7 ~~~~~~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVtiP~k~~i~~~~d~~~   86 (287)
T 1nvt_A            7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEID   86 (287)
T ss_dssp             CCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEEC
T ss_pred             hcCCccEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHHhCCCCEEEEccCCHHHHHHHHHhcC
Confidence            455678999999999999999999999999999999999987  689999999987799999999999999999999999


Q ss_pred             HHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCC
Q 015614          312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  391 (403)
Q Consensus       312 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g  391 (403)
                      +.|+.+|||||++++  +|+|+||||||.||+.+|++..             ..+++++++|+|+||+||+++++|.+.|
T Consensus        87 ~~a~~igavnt~~~~--~g~l~g~nTd~~G~~~~L~~~~-------------~~l~~k~vlV~GaGgiG~aia~~L~~~G  151 (287)
T 1nvt_A           87 KDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEI-------------GRVKDKNIVIYGAGGAARAVAFELAKDN  151 (287)
T ss_dssp             HHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHH-------------CCCCSCEEEEECCSHHHHHHHHHHTSSS
T ss_pred             HHHHHhCceeeEEee--CCEEEEecCCHHHHHHHHHHhC-------------CCcCCCEEEEECchHHHHHHHHHHHHCC
Confidence            999999999999987  8999999999999999997642             3467899999999999999999999999


Q ss_pred             CeEEEEecCCC
Q 015614          392 ARVVIFDIDFG  402 (403)
Q Consensus       392 ~~i~v~nR~~~  402 (403)
                       +|+++||+.+
T Consensus       152 -~V~v~~r~~~  161 (287)
T 1nvt_A          152 -NIIIANRTVE  161 (287)
T ss_dssp             -EEEEECSSHH
T ss_pred             -CEEEEECCHH
Confidence             9999999854

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=100.00  E-value=1.3e-37  Score=299.47  Aligned_cols=155  Identities=32%  Similarity=0.557  Sum_probs=143.6

Q ss_pred             cccccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccC
Q 015614          233 HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEV  310 (403)
Q Consensus       233 ~~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~  310 (403)
                      .++.+|++|||+|+|++||+||.|||++|+++|+++.|.++++  +++.++++.++.++|.|+|||+|||+++++++|++
T Consensus         7 ~~~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nvtiP~k~~i~~~ld~l   86 (275)
T 2hk9_A            7 MINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYV   86 (275)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEECCGGGHHHHHHHHHHHTCCEEEECTTSTTTTGGGCSEE
T ss_pred             cccCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHHHh
Confidence            4567789999999999999999999999999999999999987  58999999998889999999999999999999999


Q ss_pred             CHHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHC
Q 015614          311 HPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSR  390 (403)
Q Consensus       311 ~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~  390 (403)
                      ++.|+.+||||||+++  +|+|.|+|||+.||+.+|++.    +         ..+++++++|+|+|++|++++++|.+.
T Consensus        87 ~~~A~~~gavnti~~~--~g~~~g~nTd~~G~~~~l~~~----~---------~~~~~~~v~iiGaG~~g~aia~~L~~~  151 (275)
T 2hk9_A           87 EDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSLKSL----I---------PEVKEKSILVLGAGGASRAVIYALVKE  151 (275)
T ss_dssp             CHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHH----C---------TTGGGSEEEEECCSHHHHHHHHHHHHH
T ss_pred             hHHHHHhCCcceEEee--CCEEEeecCCHHHHHHHHHHh----C---------CCcCCCEEEEECchHHHHHHHHHHHHc
Confidence            9999999999999987  899999999999999999763    1         345688999999999999999999999


Q ss_pred             CCeEEEEecCCC
Q 015614          391 GARVVIFDIDFG  402 (403)
Q Consensus       391 g~~i~v~nR~~~  402 (403)
                      |++|+++||+.+
T Consensus       152 g~~V~v~~r~~~  163 (275)
T 2hk9_A          152 GAKVFLWNRTKE  163 (275)
T ss_dssp             TCEEEEECSSHH
T ss_pred             CCEEEEEECCHH
Confidence            999999999854

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=100.00  E-value=3.9e-34  Score=273.27  Aligned_cols=148  Identities=33%  Similarity=0.558  Sum_probs=136.2

Q ss_pred             ceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHh
Q 015614          238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ  315 (403)
Q Consensus       238 ~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  315 (403)
                      +++|||||+||+||+||.|||++|+++|+++.|.++++  +++.++++.++.. +.|+|||+|||+++++++|++++.|+
T Consensus         1 ~~~~~~~G~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~-~~G~~vt~P~k~~i~~~~~~l~~~a~   79 (263)
T 2d5c_A            1 MLRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLTLPLKEAALAHLDWVSPEAQ   79 (263)
T ss_dssp             CEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGHHHHHHHHHHH-CSEEEECTTCTTGGGGGCSEECHHHH
T ss_pred             CeEEEEECCCcccccCHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHhcccc-CceEEEcccCHHHHHHHHHHHhHHHH
Confidence            36899999999999999999999999999999999976  5788999888766 99999999999999999999999999


Q ss_pred             hccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE
Q 015614          316 AIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV  395 (403)
Q Consensus       316 ~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~  395 (403)
                      .+|++||++++  +|++.|+|||+.||+.+|++.             +..+++ +++|+|+|++|++++.+|.+.|++|+
T Consensus        80 ~~gavn~i~~~--~g~~~g~ntd~~g~~~~l~~~-------------~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~  143 (263)
T 2d5c_A           80 RIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAG-------------GIPLKG-PALVLGAGGAGRAVAFALREAGLEVW  143 (263)
T ss_dssp             HHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHT-------------TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred             HhCCCCcEEcc--CCeEEEeCCCHHHHHHHHHHh-------------CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEE
Confidence            99999999986  899999999999999998753             135678 99999999999999999999999999


Q ss_pred             EEecCCC
Q 015614          396 IFDIDFG  402 (403)
Q Consensus       396 v~nR~~~  402 (403)
                      ++||+.+
T Consensus       144 v~~r~~~  150 (263)
T 2d5c_A          144 VWNRTPQ  150 (263)
T ss_dssp             EECSSHH
T ss_pred             EEECCHH
Confidence            9999853

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.91  E-value=4.3e-26  Score=220.13  Aligned_cols=141  Identities=16%  Similarity=0.078  Sum_probs=120.1

Q ss_pred             cCCcccCCHHHHHHHHH-----hcCCCceEeecCc--ccHHHHHHHh-cCCCCceEEecccchH-HHHcccccCCHHHhh
Q 015614          246 KPVGHSKGPILHNPTFR-----HVNYNGIYVPMFV--DDLKKFFSTY-SSPDFAGFSVGFPYKE-AVMKFCDEVHPLAQA  316 (403)
Q Consensus       246 ~pi~hS~SP~ihn~~~~-----~~gl~~~y~~~~~--~~~~~~~~~~-~~~~~~G~~VT~P~K~-~v~~~~d~~~~~A~~  316 (403)
                      +||.||+||.|||.+|+     .+|+++.|.++++  ++++++++.+ ...+..|+|||.|||. ..+..++++.+.+++
T Consensus         2 ~~i~hs~sp~~h~~~~~~~~~~~~g~~~~y~~~~v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~~   81 (287)
T 1lu9_A            2 KKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKK   81 (287)
T ss_dssp             CCEEEEEESSSSCCHHHHHHHHHTTCSEEEEESSCCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHHH
T ss_pred             CceEEEccCCCCCCchhhheeeccCcceEeccCCcCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHHH
Confidence            69999999999999999     5999999999988  6899999985 6778999999999976 445566666666654


Q ss_pred             --ccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEc-chhHHHHHHHHHHHCCCe
Q 015614          317 --IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGAR  393 (403)
Q Consensus       317 --igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilG-aGGaarai~~al~~~g~~  393 (403)
                        +||+||++..  +  +.|+|||+.||+.+|++.+.            ..+++++++|+| +||+|++++++|.+.|++
T Consensus        82 ~~~gavnt~~~~--~--~~G~nTd~~g~~~~l~~~~~------------~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~  145 (287)
T 1lu9_A           82 RFFGPFRVSCML--D--SNGSNTTAAAGVALVVKAAG------------GSVKGKKAVVLAGTGPVGMRSAALLAGEGAE  145 (287)
T ss_dssp             HCBTTBCCEEEE--C--STTHHHHHHHHHHHHHHHTT------------SCCTTCEEEEETCSSHHHHHHHHHHHHTTCE
T ss_pred             hcCCCeEEEEec--C--CCcCCchHHHHHHHHHHhhc------------cCCCCCEEEEECCCcHHHHHHHHHHHHCcCE
Confidence              5999999876  4  47999999999999876411            235689999999 899999999999999999


Q ss_pred             EEEEecCCC
Q 015614          394 VVIFDIDFG  402 (403)
Q Consensus       394 i~v~nR~~~  402 (403)
                      |++++|+.+
T Consensus       146 V~i~~R~~~  154 (287)
T 1lu9_A          146 VVLCGRKLD  154 (287)
T ss_dssp             EEEEESSHH
T ss_pred             EEEEECCHH
Confidence            999999853

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.90  E-value=2.6e-25  Score=225.39  Aligned_cols=139  Identities=14%  Similarity=0.231  Sum_probs=120.7

Q ss_pred             ccccceEEe--eeccCCcccCCHHHHHHH--HHhc-CCCceEeecCcc---cHHHHHHHhcCCCCceEEe---cccchHH
Q 015614          234 INADTKVFG--LISKPVGHSKGPILHNPT--FRHV-NYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSV---GFPYKEA  302 (403)
Q Consensus       234 ~~~~~~~~~--liG~pi~hS~SP~ihn~~--~~~~-gl~~~y~~~~~~---~~~~~~~~~~~~~~~G~~V---T~P~K~~  302 (403)
                      ++..++++|  ++|.   ||.||.|||++  |+++ |+|+.|..++++   ++.++++.++ ++|.|+||   |+|||+.
T Consensus        69 vtdgt~ilGlG~iG~---hS~sPvmh~ka~lf~~~gGid~~yi~ldv~d~de~~~~v~~l~-~~f~GinvED~T~P~k~~  144 (439)
T 2dvm_A           69 VSDGSRILGLGNIGP---LAGLPVMEGKALLFKRFGGVDAFPIMIKEQEPNKFIDIVKAIA-PTFGGINLEDIASPKCFY  144 (439)
T ss_dssp             EECSTTBTTTBCCCH---HHHHHHHHHHHHHHHHHHCCEEEEEECSCCSHHHHHHHHHHTG-GGCSEEEECSCCTTHHHH
T ss_pred             EECCCeEecccceec---cccCHHHHHHHHHHHHhCCCCCeeeeeecCCHHHHHHHHHHhC-ccCcEEEEEeCCCchHHH
Confidence            333467777  8997   99999999966  9999 899999999983   5666666666 89999999   9999999


Q ss_pred             HHcccccCCHHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHH
Q 015614          303 VMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRA  382 (403)
Q Consensus       303 v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaara  382 (403)
                      +++++|+         +|||+++. +|+++.| |||+.||+++|+.. .            ..+++++++|+||||||++
T Consensus       145 il~~l~~---------avNt~vf~-dD~~gtg-ntd~aG~~~AL~~~-g------------~~l~~~rvlvlGAGgAg~a  200 (439)
T 2dvm_A          145 ILERLRE---------ELDIPVFH-DDQQGTA-AVVLAGLLNALKVV-G------------KKISEITLALFGAGAAGFA  200 (439)
T ss_dssp             HHHHHHH---------HCSSCEEE-HHHHHHH-HHHHHHHHHHHHHH-T------------CCTTTCCEEEECCSHHHHH
T ss_pred             HHHHHHH---------hcCEEEEe-CCCcEEe-ehHHHHHHHHHHHh-C------------CCccCCEEEEECccHHHHH
Confidence            9999986         89999996 2788999 99999999999753 1            3467889999999999999


Q ss_pred             HHHHHHHCCC---eEEEEe----cC
Q 015614          383 LAFGAKSRGA---RVVIFD----ID  400 (403)
Q Consensus       383 i~~al~~~g~---~i~v~n----R~  400 (403)
                      +++.|.++|+   +|+|+|    |+
T Consensus       201 ia~~L~~~G~~~~~I~vvd~~~~R~  225 (439)
T 2dvm_A          201 TLRILTEAGVKPENVRVVELVNGKP  225 (439)
T ss_dssp             HHHHHHHTTCCGGGEEEEEEETTEE
T ss_pred             HHHHHHHcCCCcCeEEEEEccCCCc
Confidence            9999999998   799999    97

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.44  E-value=1.2e-15  Score=151.91  Aligned_cols=126  Identities=17%  Similarity=0.183  Sum_probs=103.6

Q ss_pred             CcccCCHHHHHHHHHhcCC-CceEeecCcccHHHHHHHhcCCCCceEEe-cccchHHHHcccccCCHHHhhc----ccee
Q 015614          248 VGHSKGPILHNPTFRHVNY-NGIYVPMFVDDLKKFFSTYSSPDFAGFSV-GFPYKEAVMKFCDEVHPLAQAI----AAVN  321 (403)
Q Consensus       248 i~hS~SP~ihn~~~~~~gl-~~~y~~~~~~~~~~~~~~~~~~~~~G~~V-T~P~K~~v~~~~d~~~~~A~~i----gavN  321 (403)
                      |-+++||.+||..|.+.|+ ++.|..+.++  +++++.++..++.|+|+ |+|||+.+++++|.+++.|..+    ||+|
T Consensus        70 i~~vksP~~~~~~~~~~g~~~~~y~~~~~~--~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~n  147 (361)
T 1pjc_A           70 VVKVKEPLPAEYDLMQKDQLLFTYLHLAAA--RELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARF  147 (361)
T ss_dssp             EECSSCCCGGGGGGCCTTCEEEECCCGGGC--HHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHhhcCCCEEEEEeccccC--HHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHH
Confidence            3478899999999999997 8889988775  24566666678999999 9999999999999999999999    9999


Q ss_pred             EEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          322 TIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       322 Ti~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      |+.+.  +|+  |+..      ..    +.             .+++++++|+|+||+|++++..++.+|++|++++|++
T Consensus       148 t~~~~--~g~--G~~l------~~----l~-------------~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          148 LERQQ--GGR--GVLL------GG----VP-------------GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             TSGGG--TSC--CCCT------TC----BT-------------TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             Hhhcc--CCC--ceec------cC----CC-------------CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            99875  554  3321      11    11             1345899999999999999999999999999999985


Q ss_pred             C
Q 015614          402 G  402 (403)
Q Consensus       402 ~  402 (403)
                      +
T Consensus       201 ~  201 (361)
T 1pjc_A          201 E  201 (361)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.67  E-value=1.1e-08  Score=97.56  Aligned_cols=141  Identities=11%  Similarity=0.101  Sum_probs=105.5

Q ss_pred             eec-cCCcccCCHHHHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccch-----HHHHcccccCC
Q 015614          243 LIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDEVH  311 (403)
Q Consensus       243 liG-~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K-----~~v~~~~d~~~  311 (403)
                      ++| +|-+++.-- .-...++++|++..+..++.    +++.+.++.+ .++++.|+.|.+|++     +.++..+|. +
T Consensus        41 lvg~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p-~  118 (285)
T 3l07_A           41 IVGNDPASKTYVA-SKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKP-E  118 (285)
T ss_dssp             EESCCHHHHHHHH-HHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCG-G
T ss_pred             EECCCHHHHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCc-c
Confidence            446 343333222 33456789999999888853    3677777777 457899999999997     777777765 5


Q ss_pred             HHHhhccceeEEEEeccCCe-EEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHH
Q 015614          312 PLAQAIAAVNTIIRRPSDGK-LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKS  389 (403)
Q Consensus       312 ~~A~~igavNTi~~~~~~g~-l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~  389 (403)
                      ..+.-+..+|+-...  .|. -...+++-.|++..|++.             +.+++|++++|+|+|+ +|+.++..|..
T Consensus       119 KDVDG~~~~N~G~l~--~g~~~~~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVIG~s~iVG~p~A~lL~~  183 (285)
T 3l07_A          119 KDVDGFHPTNVGRLQ--LRDKKCLESCTPKGIMTMLREY-------------GIKTEGAYAVVVGASNVVGKPVSQLLLN  183 (285)
T ss_dssp             GBTTCCSHHHHHHHH--HTCTTCCCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHHHH
T ss_pred             cccccCChhheeehh--cCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHHHHH
Confidence            566667778875432  122 345789999999998764             2568899999999999 69999999999


Q ss_pred             CCCeEEEEecC
Q 015614          390 RGARVVIFDID  400 (403)
Q Consensus       390 ~g~~i~v~nR~  400 (403)
                      .|+.|++++|+
T Consensus       184 ~gAtVtv~hs~  194 (285)
T 3l07_A          184 AKATVTTCHRF  194 (285)
T ss_dssp             TTCEEEEECTT
T ss_pred             CCCeEEEEeCC
Confidence            99999999874

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.63  E-value=2.3e-08  Score=95.52  Aligned_cols=142  Identities=15%  Similarity=0.181  Sum_probs=103.0

Q ss_pred             eeec-cCCcccCCHHHHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccch-----HHHHcccccC
Q 015614          242 GLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDEV  310 (403)
Q Consensus       242 ~liG-~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K-----~~v~~~~d~~  310 (403)
                      -++| +|-+++.-- .-...++++|++..+..++.    +++.+.++.+ .++++.|+.|.+|++     +.++..++. 
T Consensus        39 ilvg~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p-  116 (285)
T 3p2o_A           39 ILVGDNPASQTYVK-SKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS-  116 (285)
T ss_dssp             EEESCCHHHHHHHH-HHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCG-
T ss_pred             EEeCCCHHHHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCc-
Confidence            3456 343333222 23456789999999888863    3677777777 467899999999997     566666654 


Q ss_pred             CHHHhhccceeEEEEeccCCeEEE-EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHH
Q 015614          311 HPLAQAIAAVNTIIRRPSDGKLIG-YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAK  388 (403)
Q Consensus       311 ~~~A~~igavNTi~~~~~~g~l~G-~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~  388 (403)
                      +..+.-+..+|+-..-  .|...| .+++-.|++..|++.             +.+++||+++|+|+|+ +||.++..|.
T Consensus       117 ~KDVDg~~~~N~g~l~--~g~~~g~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVvGrs~iVG~p~A~lL~  181 (285)
T 3p2o_A          117 SKDVDGFHPINVGYLN--LGLESGFLPCTPLGVMKLLKAY-------------EIDLEGKDAVIIGASNIVGRPMATMLL  181 (285)
T ss_dssp             GGCTTCCSHHHHHHHH--TTCCSSCCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHHH
T ss_pred             ccccccCCHhhhhhhh--cCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCchHHHHHHHHHH
Confidence            4445556667764322  222332 789999999998764             2568899999999998 6999999999


Q ss_pred             HCCCeEEEEecC
Q 015614          389 SRGARVVIFDID  400 (403)
Q Consensus       389 ~~g~~i~v~nR~  400 (403)
                      ..|+.|++++|+
T Consensus       182 ~~gAtVtv~h~~  193 (285)
T 3p2o_A          182 NAGATVSVCHIK  193 (285)
T ss_dssp             HTTCEEEEECTT
T ss_pred             HCCCeEEEEeCC
Confidence            999999999875

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.60  E-value=2.9e-08  Score=94.72  Aligned_cols=142  Identities=16%  Similarity=0.168  Sum_probs=104.1

Q ss_pred             eeec-cCCcccCCHHHHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchH-----HHHcccccC
Q 015614          242 GLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKE-----AVMKFCDEV  310 (403)
Q Consensus       242 ~liG-~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~-----~v~~~~d~~  310 (403)
                      -++| +|-+++.-- .-...++++|++..+..++.    +++.+.++.+ .++++.|+.|.+|++.     .++..++. 
T Consensus        41 ilvg~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p-  118 (286)
T 4a5o_A           41 ILVGTDPASQVYVA-HKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHP-  118 (286)
T ss_dssp             EEESCCHHHHHHHH-HHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCG-
T ss_pred             EEeCCCHHHHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCc-
Confidence            3456 444443222 23456789999999888853    3677777777 4578999999999977     66666654 


Q ss_pred             CHHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHH
Q 015614          311 HPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKS  389 (403)
Q Consensus       311 ~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~  389 (403)
                      +..+.-+..+|+-..-  .|.-...+++-.|++..|++.             +.+++||+++|+|+|+ +||.++..|..
T Consensus       119 ~KDVDG~~~~N~g~l~--~g~~~~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVvGrs~iVG~plA~lL~~  183 (286)
T 4a5o_A          119 DKDVDGFHPYNIGRLA--QRMPLLRPCTPKGIMTLLAST-------------GADLYGMDAVVVGASNIVGRPMALELLL  183 (286)
T ss_dssp             GGCTTCCSHHHHHHHH--TTCCSSCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECTTSTTHHHHHHHHHH
T ss_pred             ccccccCChhhhHHHh--cCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHHHHH
Confidence            4556666777764322  223345799999999998764             2568899999999998 79999999999


Q ss_pred             CCCeEEEEecC
Q 015614          390 RGARVVIFDID  400 (403)
Q Consensus       390 ~g~~i~v~nR~  400 (403)
                      .|+.|++++|.
T Consensus       184 ~gAtVtv~hs~  194 (286)
T 4a5o_A          184 GGCTVTVTHRF  194 (286)
T ss_dssp             TTCEEEEECTT
T ss_pred             CCCeEEEEeCC
Confidence            99999999873

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.56  E-value=5.9e-08  Score=93.30  Aligned_cols=142  Identities=18%  Similarity=0.183  Sum_probs=104.1

Q ss_pred             eeec-cCCcccCCHHHHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccch-----HHHHcccccC
Q 015614          242 GLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDEV  310 (403)
Q Consensus       242 ~liG-~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K-----~~v~~~~d~~  310 (403)
                      -++| +|-+++.-- .-...++++|++..+..++.    +++.+.++.+ .++++.|+.|.+|++     +.++..++. 
T Consensus        43 ilvg~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p-  120 (300)
T 4a26_A           43 IIVGQRMDSKKYVQ-LKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHP-  120 (300)
T ss_dssp             EEESCCHHHHHHHH-HHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCG-
T ss_pred             EEeCCCHHHHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCc-
Confidence            3556 444343322 23356789999999888743    3677777777 457899999999998     677777765 


Q ss_pred             CHHHhhccceeEEEEeccCC-eEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHH
Q 015614          311 HPLAQAIAAVNTIIRRPSDG-KLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAK  388 (403)
Q Consensus       311 ~~~A~~igavNTi~~~~~~g-~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~  388 (403)
                      +..+.-+..+|+-..-. ++ .-.-.+++-.|++..|++.             +.+++|++++|+|+|+ +|+.++..|.
T Consensus       121 ~KDVDG~~~~N~G~l~~-g~~~~~~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVIG~s~iVG~p~A~lL~  186 (300)
T 4a26_A          121 HKDADALLPVNVGLLHY-KGREPPFTPCTAKGVIVLLKRC-------------GIEMAGKRAVVLGRSNIVGAPVAALLM  186 (300)
T ss_dssp             GGCTTCCSHHHHHHHHC-TTCCCSCCCHHHHHHHHHHHHH-------------TCCCTTCEEEEECCCTTTHHHHHHHHH
T ss_pred             ccccccCCcceEEEeec-CCCcCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCchHHHHHHHHHH
Confidence            55566677777753221 11 1123789999999998875             2568899999999999 7999999999


Q ss_pred             HCCCeEEEEec
Q 015614          389 SRGARVVIFDI  399 (403)
Q Consensus       389 ~~g~~i~v~nR  399 (403)
                      ..|+.|++++|
T Consensus       187 ~~gAtVtv~~~  197 (300)
T 4a26_A          187 KENATVTIVHS  197 (300)
T ss_dssp             HTTCEEEEECT
T ss_pred             HCCCeEEEEeC
Confidence            99999999997

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=97.81  E-value=1e-05  Score=84.45  Aligned_cols=65  Identities=18%  Similarity=0.235  Sum_probs=51.2

Q ss_pred             cCCeEEEEeccHHHHHHHHHHH-------H--------HhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614          328 SDGKLIGYNTDCEASITAIEDA-------I--------KERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (403)
Q Consensus       328 ~~g~l~G~NTD~~G~~~~l~~~-------~--------~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~  392 (403)
                      .+|++.|+|||+.|++..++-.       +        ++.+        ...+++++|+|+|+||.|.+++..|+..|+
T Consensus       280 ~~Gkl~g~~tD~~g~l~~~~la~~~~~lnL~lmrwrll~~~g--------q~kL~~~kVLIVGaGGLGs~va~~La~aGV  351 (598)
T 3vh1_A          280 VQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLN--------LDIIKNTKVLLLGAGTLGCYVSRALIAWGV  351 (598)
T ss_dssp             TTSSSSCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHCTTCC--------HHHHHTCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCCCCcceeecchhccCHHHHHHHHHhhhhhhhhhhccchhh--------HHHHhCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            3799999999999999988611       0        1000        012457899999999999999999999999


Q ss_pred             -eEEEEecC
Q 015614          393 -RVVIFDID  400 (403)
Q Consensus       393 -~i~v~nR~  400 (403)
                       +|+|++.+
T Consensus       352 G~ItLvD~D  360 (598)
T 3vh1_A          352 RKITFVDNG  360 (598)
T ss_dssp             CEEEEECCS
T ss_pred             CEEEEECCC
Confidence             99999654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.10  E-value=9.1e-05  Score=72.94  Aligned_cols=59  Identities=19%  Similarity=0.191  Sum_probs=47.8

Q ss_pred             CCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHH-CCC-eEEEEecCCC
Q 015614          329 DGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFG  402 (403)
Q Consensus       329 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~-~g~-~i~v~nR~~~  402 (403)
                      ++.|.|+|||..|++.+..  +.             ....+++.|||+|+.|++.+.+|.. .+. +|+|+||+++
T Consensus       105 ~~~lT~~RTaa~s~laa~~--la-------------~~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~  165 (350)
T 1x7d_A          105 LTIATALRTAATSLMAAQA--LA-------------RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPL  165 (350)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HS-------------CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHH
T ss_pred             CCEEEeehhhHHHHHHHHH--hc-------------cccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence            5568899999999999862  32             1246799999999999999998754 566 8999999864

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=97.04  E-value=0.0073  Score=54.48  Aligned_cols=122  Identities=17%  Similarity=0.196  Sum_probs=77.7

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      ...|+.+|...+.+++...++.+.+.|+|+||+|.-..   +..+.+..+++..+.|+++-.     |+..  +. +   
T Consensus         6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~---~~~~~i~~i~~~~~~~l~vg~-----g~~~--~~-~---   71 (212)
T 2v82_A            6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSP---QWEQSIPAIVDAYGDKALIGA-----GTVL--KP-E---   71 (212)
T ss_dssp             SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTST---THHHHHHHHHHHHTTTSEEEE-----ECCC--SH-H---
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHhCCCCeEEEe-----cccc--CH-H---
Confidence            45678899999999999999998889999999985421   112455556555677877621     2221  22 2   


Q ss_pred             HHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           90 ALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        90 ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      .++.+++.|+++|=+.-. ..+..+..   +..+.+++.+.|+      .+++    .++.+.|+|++++
T Consensus        72 ~i~~a~~~Gad~V~~~~~-~~~~~~~~---~~~g~~~~~g~~t------~~e~----~~a~~~G~d~v~v  127 (212)
T 2v82_A           72 QVDALARMGCQLIVTPNI-HSEVIRRA---VGYGMTVCPGCAT------ATEA----FTALEAGAQALKI  127 (212)
T ss_dssp             HHHHHHHTTCCEEECSSC-CHHHHHHH---HHTTCEEECEECS------HHHH----HHHHHTTCSEEEE
T ss_pred             HHHHHHHcCCCEEEeCCC-CHHHHHHH---HHcCCCEEeecCC------HHHH----HHHHHCCCCEEEE
Confidence            356788899999864331 12222222   2235667766553      2343    3456789999996

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=96.98  E-value=0.00015  Score=70.47  Aligned_cols=59  Identities=14%  Similarity=0.097  Sum_probs=47.6

Q ss_pred             CCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHH-CCC-eEEEEecCCC
Q 015614          329 DGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFG  402 (403)
Q Consensus       329 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~-~g~-~i~v~nR~~~  402 (403)
                      ++.+.++|||..|.+.+.  .+.             ....++++|+|+|+.|++.+.+|.+ .+. +|+|+||+++
T Consensus       101 ~~~lt~~RTaa~s~laa~--~la-------------~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~  161 (322)
T 1omo_A          101 ATYTTSLRTGAAGGIAAK--YLA-------------RKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREK  161 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHH--HHS-------------CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHH
T ss_pred             CchHHHHHHHHHHHHHHH--hcc-------------CCCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHH
Confidence            445788999999998875  232             1246799999999999999999987 456 8999999865

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=96.91  E-value=7.9e-05  Score=75.46  Aligned_cols=68  Identities=21%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (403)
Q Consensus       313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~  392 (403)
                      ...++|++|||+.+  +|++.|     .||...++..-.             .+++++|+|+|+||.|..++..|+..|+
T Consensus         5 ~~~r~~~vntl~~~--~g~~~g-----~gf~~g~e~~~~-------------~L~~~~VlvvG~GGlGs~va~~La~aGv   64 (434)
T 1tt5_B            5 WEGRWNHVKKFLER--SGPFTH-----PDFEPSTESLQF-------------LLDTCKVLVIGAGGLGCELLKNLALSGF   64 (434)
T ss_dssp             CTTTTHHHHHHHHS--CCSSCC-----TTCCCCSSHHHH-------------HHHTCCEEEECSSTHHHHHHHHHHHTTC
T ss_pred             hhhhhccceEEEcC--CCcccc-----cccccCHHHHHH-------------HhcCCEEEEECcCHHHHHHHHHHHHcCC
Confidence            34678999999976  888876     566554332110             1235789999999999999999999999


Q ss_pred             -eEEEEecC
Q 015614          393 -RVVIFDID  400 (403)
Q Consensus       393 -~i~v~nR~  400 (403)
                       +|+|++.+
T Consensus        65 g~i~ivD~D   73 (434)
T 1tt5_B           65 RQIHVIDMD   73 (434)
T ss_dssp             CCEEEEECC
T ss_pred             CEEEEEcCC
Confidence             99999653

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.88  E-value=0.00016  Score=69.86  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=48.2

Q ss_pred             CCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHC-CC-eEEEEecCCC
Q 015614          329 DGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFG  402 (403)
Q Consensus       329 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~-g~-~i~v~nR~~~  402 (403)
                      ++.|.|+|||..|++.+.  .+.             ....+++.|||+|++|++++.+|.+. |. +|+++||+++
T Consensus       111 ~~~lt~~rT~a~~~la~~--~la-------------~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~  171 (312)
T 2i99_A          111 GNVITAKRTAAVSAIATK--FLK-------------PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKE  171 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHH--HHS-------------CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHH
T ss_pred             chhHHHHHHHHHHHHHHH--HhC-------------CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence            456888999999999882  332             12467899999999999999999876 88 8999999864

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.54  E-value=0.0038  Score=59.09  Aligned_cols=130  Identities=15%  Similarity=0.199  Sum_probs=79.2

Q ss_pred             eec-cCCcccCCHHHHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHHcccccCCHHHhh
Q 015614          243 LIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (403)
Q Consensus       243 liG-~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  316 (403)
                      ++| +|-+++.--.- ....+++|+ .....++.    +++.+.++.+ .++.+.|+-|-.|.-..    +|   + -+.
T Consensus        34 lvg~dpaS~~Yv~~k-~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~----id---~-~~v  103 (276)
T 3ngx_A           34 QIGDNEAASIYARAK-IRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKG----FD---Y-YEI  103 (276)
T ss_dssp             EESCCHHHHHHHHHH-HHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCTT----CC---H-HHH
T ss_pred             EeCCCHHHHHHHHHH-HHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CC---H-HHH
Confidence            456 44444333223 345688999 66554432    3566666666 56889999999996421    11   1 111


Q ss_pred             ccceeEEEEeccCCeEEEEe-------------ccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHH
Q 015614          317 IAAVNTIIRRPSDGKLIGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRA  382 (403)
Q Consensus       317 igavNTi~~~~~~g~l~G~N-------------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aara  382 (403)
                      +.+++-- ++ =|| ++-+|             .--.|++..|++.             +  ++|++++|+|+|+ +++.
T Consensus       104 ~~~I~p~-KD-VDG-~~p~n~G~l~~g~~~~~PcTp~gv~~lL~~~-------------~--l~Gk~vvVvG~s~iVG~p  165 (276)
T 3ngx_A          104 VRNIPYY-KD-VDA-LSPYNQGLIALNREFLVPATPRAVIDIMDYY-------------G--YHENTVTIVNRSPVVGRP  165 (276)
T ss_dssp             HTTSCGG-GB-TTC-CSHHHHHHHHTTCCSSCCHHHHHHHHHHHHH-------------T--CCSCEEEEECCCTTTHHH
T ss_pred             HhhCCCC-Cc-ccC-CCccchhhhhcCCCCCCCCcHHHHHHHHHHh-------------C--cCCCEEEEEcCChHHHHH
Confidence            1222110 00 011 11111             1225888887654             2  6799999999998 7999


Q ss_pred             HHHHHHHCCCeEEEEecC
Q 015614          383 LAFGAKSRGARVVIFDID  400 (403)
Q Consensus       383 i~~al~~~g~~i~v~nR~  400 (403)
                      ++..|...|+.|++++|.
T Consensus       166 lA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          166 LSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             HHHHHHHTTCEEEEECTT
T ss_pred             HHHHHHHCCCeEEEEeCC
Confidence            999999999999999874

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=96.49  E-value=0.082  Score=48.60  Aligned_cols=117  Identities=16%  Similarity=0.208  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCC-CCCCHHHHHHHHHHHHHcCCc
Q 015614           22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGL-YEGDEHKRLEALHLAEDLGAD  100 (403)
Q Consensus        22 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~-~~~~~~~~~~ll~~~~~~g~~  100 (403)
                      .+++......+...|+.+|+.        ...+.+..+|+.+++|+|--+|.. -||. +-.++  +.+-++.+.+.|+|
T Consensus        35 ~~~~~~~A~a~~~~Ga~~i~~--------~~~~~i~~ir~~v~~Pvig~~k~~-~~~~~~~I~~--~~~~i~~~~~aGad  103 (229)
T 3q58_A           35 PEIVAAMAQAAASAGAVAVRI--------EGIENLRTVRPHLSVPIIGIIKRD-LTGSPVRITP--YLQDVDALAQAGAD  103 (229)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEE--------ESHHHHHHHGGGCCSCEEEECBCC-CSSCCCCBSC--SHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHCCCcEEEE--------CCHHHHHHHHHhcCCCEEEEEeec-CCCCceEeCc--cHHHHHHHHHcCCC
Confidence            566676677777889999886        124678899999999998665532 2331 11111  22234567788999


Q ss_pred             EEEEeccc--cchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          101 YVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       101 yvDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +|-++...  .++.+.++. ..+..+..++++.|+      .++    ..++.+.|+|++-+
T Consensus       104 ~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t------~ee----a~~a~~~Gad~Ig~  155 (229)
T 3q58_A          104 IIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCST------VNE----GISCHQKGIEFIGT  155 (229)
T ss_dssp             EEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSS------HHH----HHHHHHTTCSEEEC
T ss_pred             EEEECccccCChHHHHHHHHHHHHCCCEEEEecCC------HHH----HHHHHhCCCCEEEe
Confidence            99887653  222333333 234457889999885      233    45677889999954

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.27  E-value=0.00086  Score=56.75  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=32.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +++++|+|+|+.|++++..|.+.|++|++++|+.+
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~   55 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNID   55 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            78999999999999999999999999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.25  E-value=0.0022  Score=51.34  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCC-CeEEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g-~~i~v~nR~~~  402 (403)
                      +++++|+|+|+.|++++..|.+.| .+|++++|+++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~   40 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA   40 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence            578999999999999999999999 59999999753

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=96.19  E-value=0.11  Score=47.54  Aligned_cols=118  Identities=18%  Similarity=0.225  Sum_probs=68.8

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (403)
                      |+..+...+.+++...++.+.+.|++++|+|..   ..+..+.++.+++..+ .+++-.      |.. .+. ++   ++
T Consensus        19 ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~-~l~vga------Gtv-l~~-d~---~~   83 (224)
T 1vhc_A           19 IVPVIALDNADDILPLADTLAKNGLSVAEITFR---SEAAADAIRLLRANRP-DFLIAA------GTV-LTA-EQ---VV   83 (224)
T ss_dssp             EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETT---STTHHHHHHHHHHHCT-TCEEEE------ESC-CSH-HH---HH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHHcCCCEEEEecc---CchHHHHHHHHHHhCc-CcEEee------CcE-eeH-HH---HH
Confidence            455668888999988888889999999999953   2222345665665553 233221      121 122 23   35


Q ss_pred             HHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        93 ~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      .+++.|+++|=.- ....+..+..+.  .+...+++ .|    ||  +|+    .++.+.|+|++|+
T Consensus        84 ~A~~aGAd~v~~p-~~d~~v~~~ar~--~g~~~i~G-v~----t~--~e~----~~A~~~Gad~vk~  136 (224)
T 1vhc_A           84 LAKSSGADFVVTP-GLNPKIVKLCQD--LNFPITPG-VN----NP--MAI----EIALEMGISAVKF  136 (224)
T ss_dssp             HHHHHTCSEEECS-SCCHHHHHHHHH--TTCCEECE-EC----SH--HHH----HHHHHTTCCEEEE
T ss_pred             HHHHCCCCEEEEC-CCCHHHHHHHHH--hCCCEEec-cC----CH--HHH----HHHHHCCCCEEEE
Confidence            6788899999433 122222222221  23334454 44    33  333    4466789999999

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=96.15  E-value=0.1  Score=47.10  Aligned_cols=117  Identities=18%  Similarity=0.222  Sum_probs=67.9

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      .++..+...+.+++...++.+.+.|+++||+|..   ..+..+.++.+++ .+  +.+-.      |.. .. .+   -+
T Consensus        14 ~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k---~~~~~~~i~~~~~-~~--~~~ga------g~v-l~-~d---~~   76 (207)
T 2yw3_A           14 RLLPLLTVRGGEDLLGLARVLEEEGVGALEITLR---TEKGLEALKALRK-SG--LLLGA------GTV-RS-PK---EA   76 (207)
T ss_dssp             CEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECS---STHHHHHHHHHTT-SS--CEEEE------ESC-CS-HH---HH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCC---ChHHHHHHHHHhC-CC--CEEEe------CeE-ee-HH---HH
Confidence            4566677778888888788888889999999953   2222344555554 22  22211      222 22 22   34


Q ss_pred             HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.+++.|+++|-.- ....+..+....   .+..+|...|+    |  +|+    .++.+.|+|++|+
T Consensus        77 ~~A~~~GAd~v~~~-~~d~~v~~~~~~---~g~~~i~G~~t----~--~e~----~~A~~~Gad~v~~  130 (207)
T 2yw3_A           77 EAALEAGAAFLVSP-GLLEEVAALAQA---RGVPYLPGVLT----P--TEV----ERALALGLSALKF  130 (207)
T ss_dssp             HHHHHHTCSEEEES-SCCHHHHHHHHH---HTCCEEEEECS----H--HHH----HHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEEEcC-CCCHHHHHHHHH---hCCCEEecCCC----H--HHH----HHHHHCCCCEEEE
Confidence            56788899998654 222333222222   23445555663    2  333    4455779999999

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=96.14  E-value=0.078  Score=48.41  Aligned_cols=113  Identities=13%  Similarity=0.122  Sum_probs=73.4

Q ss_pred             CCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEe-c--CCCCCCC-chHHHHHHhcCCCcEEEEeecCCCCCCCCCC
Q 015614            8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-D--CINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGD   83 (403)
Q Consensus         8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~   83 (403)
                      ..+++|+-+|..-|...+..+++.+.+.|+|++++|+ |  +.+.... .+.++.+++.++.|+.+.+=..        +
T Consensus         4 ~~~~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~--------d   75 (228)
T 1h1y_A            4 AAAAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVT--------N   75 (228)
T ss_dssp             --CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESS--------C
T ss_pred             ccCCeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEec--------C
Confidence            4578899999999999999999988888999999996 2  2222211 2567788877777887666542        1


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeccccchH-HHHHHhccCCCcEEEEecc
Q 015614           84 EHKRLEALHLAEDLGADYVDFELKVASNI-LGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        84 ~~~~~~ll~~~~~~g~~yvDiEl~~~~~~-~~~l~~~~~~~~kiI~S~H  131 (403)
                      ++.   +++.+++.|+++|-+=....+.. .+.+...++.+.++++|.+
T Consensus        76 ~~~---~i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~  121 (228)
T 1h1y_A           76 PSD---YVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLR  121 (228)
T ss_dssp             GGG---GHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHH---HHHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEe
Confidence            222   35566778999986655443333 1112222235678888874

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.11  E-value=0.0025  Score=63.75  Aligned_cols=37  Identities=24%  Similarity=0.478  Sum_probs=34.2

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      ..+++++|+|+|++|++++..|...|+ +|+++||+.+
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~  202 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYE  202 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHH
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            468999999999999999999999999 9999999864

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=96.11  E-value=0.15  Score=46.23  Aligned_cols=119  Identities=13%  Similarity=0.143  Sum_probs=70.9

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      .++..+...+.+++...++.+.+.|++++|+|..   ..+..+.++.+++..+-.++ -.      |.. .+. +   -+
T Consensus        17 ~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~~~~v-ga------gtv-i~~-d---~~   81 (214)
T 1wbh_A           17 PVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLR---TECAVDAIRAIAKEVPEAIV-GA------GTV-LNP-Q---QL   81 (214)
T ss_dssp             SEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESC---STTHHHHHHHHHHHCTTSEE-EE------ESC-CSH-H---HH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCC---ChhHHHHHHHHHHHCcCCEE-ee------CEE-EEH-H---HH
Confidence            3556678888999988888888999999999953   22223456656665542222 11      222 222 2   33


Q ss_pred             HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.+++.|+++|=.- ....+..+..   +..+..+|...|+    |  +|    ..++.+.|+|++|+
T Consensus        82 ~~A~~aGAd~v~~p-~~d~~v~~~~---~~~g~~~i~G~~t----~--~e----~~~A~~~Gad~v~~  135 (214)
T 1wbh_A           82 AEVTEAGAQFAISP-GLTEPLLKAA---TEGTIPLIPGIST----V--SE----LMLGMDYGLKEFKF  135 (214)
T ss_dssp             HHHHHHTCSCEEES-SCCHHHHHHH---HHSSSCEEEEESS----H--HH----HHHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEEEcC-CCCHHHHHHH---HHhCCCEEEecCC----H--HH----HHHHHHCCCCEEEE
Confidence            56788899998644 2222222211   1234455555653    3  33    34556789999999

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=96.10  E-value=0.16  Score=46.59  Aligned_cols=117  Identities=18%  Similarity=0.172  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCC-CCCCHHHHHHHHHHHHHcCCc
Q 015614           22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGL-YEGDEHKRLEALHLAEDLGAD  100 (403)
Q Consensus        22 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~-~~~~~~~~~~ll~~~~~~g~~  100 (403)
                      .+++....+.+...|+.+|+.        ...+.+..+|+.+++|+|--+| +.-||. +-.++  +++-++.+.+.|+|
T Consensus        35 ~~~~~~~A~a~~~~Ga~~i~~--------~~~~~i~~ir~~v~~Pvig~~k-~d~~~~~~~I~~--~~~~i~~~~~~Gad  103 (232)
T 3igs_A           35 PEIVAAMALAAEQAGAVAVRI--------EGIDNLRMTRSLVSVPIIGIIK-RDLDESPVRITP--FLDDVDALAQAGAA  103 (232)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEE--------ESHHHHHHHHTTCCSCEEEECB-CCCSSCCCCBSC--SHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHCCCeEEEE--------CCHHHHHHHHHhcCCCEEEEEe-ecCCCcceEeCc--cHHHHHHHHHcCCC
Confidence            566677677777889999886        1246788999889999965444 333551 11111  22234567788999


Q ss_pred             EEEEeccc--cchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          101 YVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       101 yvDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +|=+....  .++.++++. ..+..+..++++.|+      .++    ..++.+.|+|++-+
T Consensus       104 ~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t------~ee----a~~a~~~Gad~Ig~  155 (232)
T 3igs_A          104 IIAVDGTARQRPVAVEALLARIHHHHLLTMADCSS------VDD----GLACQRLGADIIGT  155 (232)
T ss_dssp             EEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCS------HHH----HHHHHHTTCSEEEC
T ss_pred             EEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCC------HHH----HHHHHhCCCCEEEE
Confidence            99887653  122333333 234457889999885      223    45677889999953

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=96.03  E-value=0.094  Score=46.72  Aligned_cols=118  Identities=19%  Similarity=0.226  Sum_probs=75.7

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC--CCcEEE-EeecCCCCCCCCCCHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK--PLPVLI-VYRPKWAGGLYEGDEHKRL   88 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~--~~PiI~-T~R~~~eGG~~~~~~~~~~   88 (403)
                      .++..+...+.+++...++.+.+.|+|+||+-+..   ....+.+..+|+..  +.++-+ |+.          +.++  
T Consensus        11 ~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~---~~~~~~i~~ir~~~~~~~~ig~~~v~----------~~~~--   75 (205)
T 1wa3_A           11 KIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTV---PDADTVIKELSFLKEKGAIIGAGTVT----------SVEQ--   75 (205)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHTHHHHHTTCEEEEESCC----------SHHH--
T ss_pred             CEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHHHCCCCcEEEecccC----------CHHH--
Confidence            45678899999999988888888899999986542   11123466666553  333333 211          2222  


Q ss_pred             HHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614           89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                        .+.+.+.|+||| +--.+..+..+..   ++.+..+|.-.|    ||  ++    ..++.+.|+|++|+-
T Consensus        76 --~~~a~~~Gad~i-v~~~~~~~~~~~~---~~~g~~vi~g~~----t~--~e----~~~a~~~Gad~vk~~  131 (205)
T 1wa3_A           76 --CRKAVESGAEFI-VSPHLDEEISQFC---KEKGVFYMPGVM----TP--TE----LVKAMKLGHTILKLF  131 (205)
T ss_dssp             --HHHHHHHTCSEE-ECSSCCHHHHHHH---HHHTCEEECEEC----SH--HH----HHHHHHTTCCEEEET
T ss_pred             --HHHHHHcCCCEE-EcCCCCHHHHHHH---HHcCCcEECCcC----CH--HH----HHHHHHcCCCEEEEc
Confidence              466778899999 7655555444333   235677876554    32  23    446678999999973

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=96.00  E-value=0.054  Score=48.33  Aligned_cols=131  Identities=13%  Similarity=0.084  Sum_probs=82.8

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (403)
                      .+|+.+-.++.++.++.++.... ++|++|+-..++.... .+.++.+++.. +.|+++.+-..      +. .+.   .
T Consensus         2 ~li~a~d~~~~~~~~~~~~~~~~-~v~~iev~~~~~~~~g-~~~i~~l~~~~~~~~i~~~l~~~------di-~~~---~   69 (207)
T 3ajx_A            2 KLQVAIDLLSTEAALELAGKVAE-YVDIIELGTPLIKAEG-LSVITAVKKAHPDKIVFADMKTM------DA-GEL---E   69 (207)
T ss_dssp             EEEEEECCSCHHHHHHHHHHHGG-GCSEEEECHHHHHHHC-THHHHHHHHHSTTSEEEEEEEEC------SC-HHH---H
T ss_pred             eEEEEeCCCCHHHHHHHHHHhhc-cCCEEEECcHHHHhhC-HHHHHHHHHhCCCCeEEEEEEec------Cc-cHH---H
Confidence            57899999999999998887644 8999999776542222 24677888776 78999866532      11 222   3


Q ss_pred             HHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614           91 LHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        91 l~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      .+.++++|+++|-+-....++..+.++ ..++.+.++-+|.|.. .+|  ++   ..+.+.+.|+|+||+.
T Consensus        70 ~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~-~~p--~~---~~~~~~~~g~d~v~~~  134 (207)
T 3ajx_A           70 ADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGI-EDK--AT---RAQEVRALGAKFVEMH  134 (207)
T ss_dssp             HHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTC-SSH--HH---HHHHHHHTTCSEEEEE
T ss_pred             HHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecC-CCh--HH---HHHHHHHhCCCEEEEE
Confidence            467888999999775544432232332 1222355666777732 132  22   2334445689999875

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=95.85  E-value=0.086  Score=47.76  Aligned_cols=131  Identities=11%  Similarity=0.029  Sum_probs=81.6

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHH
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRL   88 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (403)
                      ++.+++++-.+++++.++.++.. ..++|++|+-+-+..... .+.++.+|+. .+.|+++-+-.- +      ..+.  
T Consensus         6 ~~~lilalD~~~~~~~~~~~~~~-~~~vd~ie~g~~~~~~~G-~~~i~~lr~~~~~~~i~ld~~l~-d------~p~~--   74 (218)
T 3jr2_A            6 KPMIQIALDQTNLTDAVAVASNV-ASYVDVIEVGTILAFAEG-MKAVSTLRHNHPNHILVCDMKTT-D------GGAI--   74 (218)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHHHHT-THHHHHHHHHCTTSEEEEEEEEC-S------CHHH--
T ss_pred             CCCeEEEeCCCCHHHHHHHHHHh-cCCceEEEeCcHHHHhcC-HHHHHHHHHhCCCCcEEEEEeec-c------cHHH--
Confidence            57899999999999999988874 678999998654422112 2467888877 467888765432 2      1222  


Q ss_pred             HHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           89 EALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                       ..+.+.+.|+++|-+-.....+..++++ ..++.+.+.++-.-   +.++.+++.+    +.+.|+|.+++
T Consensus        75 -~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l---~~~T~~~~~~----~~~~g~d~v~~  138 (218)
T 3jr2_A           75 -LSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIY---GNWTMQDAKA----WVDLGITQAIY  138 (218)
T ss_dssp             -HHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECC---SSCCHHHHHH----HHHTTCCEEEE
T ss_pred             -HHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeee---ecCCHHHHHH----HHHcCccceee
Confidence             4478889999999887655433233332 22334566654111   1122233333    33458998876

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.79  E-value=0.006  Score=58.24  Aligned_cols=38  Identities=21%  Similarity=0.217  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.+++++|+|+|++|++++..|...|++|++++|+.
T Consensus       153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35779999999999999999999999999999999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.78  E-value=0.0099  Score=50.71  Aligned_cols=37  Identities=30%  Similarity=0.337  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+++++|+|+|..|+.++..|.+.|.+|++++|+++
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4578999999999999999999999999999999865

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.76  E-value=0.0064  Score=57.88  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+.+++++|+|+|++|++++..|...|++|++++|+.
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4678999999999999999999999999999999975

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=95.61  E-value=0.81  Score=41.00  Aligned_cols=118  Identities=12%  Similarity=0.139  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCC-CCCCCCHHHHHHHHHHHHHcCC
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAG-GLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG-G~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      +.+.....++.+.+.|++.+++  |     . .+.++.+++.+++|++-.+|....| +..-....+   .++.+++.|+
T Consensus        21 ~~~~~~~~a~~~~~~Ga~~i~~--~-----~-~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~---~i~~~~~~Ga   89 (223)
T 1y0e_A           21 SSFIMSKMALAAYEGGAVGIRA--N-----T-KEDILAIKETVDLPVIGIVKRDYDHSDVFITATSK---EVDELIESQC   89 (223)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEE--E-----S-HHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHH---HHHHHHHHTC
T ss_pred             CCccHHHHHHHHHHCCCeeecc--C-----C-HHHHHHHHHhcCCCEEeeeccCCCccccccCCcHH---HHHHHHhCCC
Confidence            3355555566666789999976  3     2 3578888888999997655543323 332222222   3455678899


Q ss_pred             cEEEEeccc---c----chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614          100 DYVDFELKV---A----SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus       100 ~yvDiEl~~---~----~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      ++|-+....   +    .+.++.++... ++..++.+.|+      .+++    .++.+.|+|++.+.
T Consensus        90 d~v~l~~~~~~~p~~~~~~~i~~~~~~~-~~~~v~~~~~t------~~e~----~~~~~~G~d~i~~~  146 (223)
T 1y0e_A           90 EVIALDATLQQRPKETLDELVSYIRTHA-PNVEIMADIAT------VEEA----KNAARLGFDYIGTT  146 (223)
T ss_dssp             SEEEEECSCSCCSSSCHHHHHHHHHHHC-TTSEEEEECSS------HHHH----HHHHHTTCSEEECT
T ss_pred             CEEEEeeecccCcccCHHHHHHHHHHhC-CCceEEecCCC------HHHH----HHHHHcCCCEEEeC
Confidence            998776543   1    13344444322 36778777763      2333    34678899998753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.61  E-value=0.0071  Score=56.34  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=32.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~  401 (403)
                      ++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            36799999999999999999999999 999999874

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=95.60  E-value=0.073  Score=47.64  Aligned_cols=130  Identities=18%  Similarity=0.196  Sum_probs=85.5

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecC-CCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC-INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~-l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      ++++++-.+++++.+..++.. ..++|++|+-..+ +.. . .+.++.+|+. .+.|+.++.-.. .      .. ++  
T Consensus         2 ~li~a~D~~~~~~~~~~~~~~-~~~~diie~G~p~~~~~-g-~~~i~~ir~~~~~~~i~~~~~~~-~------~~-~~--   68 (211)
T 3f4w_A            2 KLQLALDELTLPEAMVFMDKV-VDDVDIIEVGTPFLIRE-G-VNAIKAIKEKYPHKEVLADAKIM-D------GG-HF--   68 (211)
T ss_dssp             EEEEEECSCCHHHHHHHHHHH-GGGCSEEEECHHHHHHH-T-THHHHHHHHHCTTSEEEEEEEEC-S------CH-HH--
T ss_pred             cEEEEeCCCCHHHHHHHHHHh-hcCccEEEeCcHHHHhc-c-HHHHHHHHHhCCCCEEEEEEEec-c------ch-HH--
Confidence            478999999999999888876 4689999987643 211 1 2468888877 588987765442 1      11 22  


Q ss_pred             HHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614           90 ALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        90 ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      +++.+.+.|+++|-+-.....+.++++. ..++.+.++++..++    |.  +..+.++++.+.|+|++.+-
T Consensus        69 ~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~----~~--t~~~~~~~~~~~g~d~i~v~  134 (211)
T 3f4w_A           69 ESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMIC----VD--DLPARVRLLEEAGADMLAVH  134 (211)
T ss_dssp             HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTT----CS--SHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecC----CC--CHHHHHHHHHHcCCCEEEEc
Confidence            3688899999999986544323223333 223346788876443    21  23455667777899998653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.54  E-value=0.012  Score=54.99  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      ++++|+|+|+||+|.+++..|+..|+ +|+|++++
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999 99999654

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.49  E-value=0.013  Score=57.29  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++++|+|+|+||.|.+++..|+..|+ +|+|++++
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            357899999999999999999999999 99999875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.46  E-value=0.015  Score=59.49  Aligned_cols=38  Identities=39%  Similarity=0.600  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.||+++|+|+||.|++++..|+..|++|++++|++
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45789999999999999999999999999999999874

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.31  E-value=0.023  Score=54.95  Aligned_cols=136  Identities=16%  Similarity=0.131  Sum_probs=77.7

Q ss_pred             HHHHHhcCCCceEeecCcc-cHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEE-----E-E--
Q 015614          258 NPTFRHVNYNGIYVPMFVD-DLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTI-----I-R--  325 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~~-~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi-----~-~--  325 (403)
                      ....+++|+......++-+ ++.+.+..+ .++++.|+-|-.|.-..+-  ..++.++|. +.+-..+.+     . .  
T Consensus        58 ~k~~~~~Gi~~~~~~l~~~~~l~~~i~~lN~d~~v~GIlvqlPlp~~~~~~~i~~~I~p~-KDVDG~~~~n~g~l~~~~~  136 (320)
T 1edz_A           58 QKTSESMGFRYDLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKE-KDVEGLNHVYYQNLYHNVR  136 (320)
T ss_dssp             HHHHHHHTCEEEEEECSSGGGHHHHHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTT-TBTTCCSHHHHHHHHTTCC
T ss_pred             HHHHHHcCCEEEEEECCChHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccCcCChhhhHHHhcCCc
Confidence            3457889998776666543 477777777 5788999999999742221  112222211 111000000     0 0  


Q ss_pred             --eccC--CeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEecC
Q 015614          326 --RPSD--GKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       326 --~~~~--g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR~  400 (403)
                        .+.+  ..+  .-.--.|.+..|++.    +..+..-+.+..+++++++|+|+|.+ |+.++..|...|+.|+|+||+
T Consensus       137 ~l~~~~~~~~~--~PcTp~a~v~ll~~~----~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          137 YLDKENRLKSI--LPCTPLAIVKILEFL----KIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             BSSSSSCSBCC--CCHHHHHHHHHHHHT----TCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cccccccCCCc--CCCcHHHHHHHHHhh----cccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence              0000  000  011235666766652    00000000124678999999999985 999999999999999999997

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=95.23  E-value=0.27  Score=44.63  Aligned_cols=112  Identities=9%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCC-CCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015614           24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKW-AGGLYEGDEHKRLEALHLAEDLGADYV  102 (403)
Q Consensus        24 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~-eGG~~~~~~~~~~~ll~~~~~~g~~yv  102 (403)
                      ++...++.+.+.|++.++++       . .+.+..+++.+++|++-.+|..- +++..-...   .+.++.+.+.|++.|
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~-------~-~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~---~~~i~~~~~~Gad~V  105 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRAN-------S-VRDIKEIQAITDLPIIGIIKKDYPPQEPFITAT---MTEVDQLAALNIAVI  105 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEE-------S-HHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCS---HHHHHHHHTTTCSEE
T ss_pred             hHHHHHHHHHHCCCcEeecC-------C-HHHHHHHHHhCCCCEEeeEcCCCCccccccCCh---HHHHHHHHHcCCCEE
Confidence            44444455556799999874       2 24688888888999965555332 333322222   233566788999999


Q ss_pred             EEecccc--------chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614          103 DFELKVA--------SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus       103 DiEl~~~--------~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      .+.....        .+.++.++.. -++..++++.|+      .++    ..++.+.|+|++
T Consensus       106 ~l~~~~~~~~~~~~~~~~i~~i~~~-~~~~~v~~~~~t------~~e----a~~a~~~Gad~i  157 (234)
T 1yxy_A          106 AMDCTKRDRHDGLDIASFIRQVKEK-YPNQLLMADIST------FDE----GLVAHQAGIDFV  157 (234)
T ss_dssp             EEECCSSCCTTCCCHHHHHHHHHHH-CTTCEEEEECSS------HHH----HHHHHHTTCSEE
T ss_pred             EEcccccCCCCCccHHHHHHHHHHh-CCCCeEEEeCCC------HHH----HHHHHHcCCCEE
Confidence            9876532        2344444432 136778888773      223    556677899988

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=95.20  E-value=0.27  Score=44.95  Aligned_cols=109  Identities=11%  Similarity=0.143  Sum_probs=71.7

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEe-cC--CCCCCC-chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DC--INNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~--l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      +|+-+|..-|...+..+++.+.+.|+|.+|+|+ |-  .++.+. .+.++.+|+.++.|+.+.+=.. +       .+. 
T Consensus         6 ~i~psila~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-d-------p~~-   76 (230)
T 1tqj_A            6 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-E-------PEK-   76 (230)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-S-------GGG-
T ss_pred             EEEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-C-------HHH-
Confidence            489999999999999889888888999999998 21  112221 2567788887788988777642 1       122 


Q ss_pred             HHHHHHHHHcCCcEEEEecc--ccchHHHHHHhccCCCcEEEEecc
Q 015614           88 LEALHLAEDLGADYVDFELK--VASNILGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~--~~~~~~~~l~~~~~~~~kiI~S~H  131 (403)
                        +++.+++.|+++|-+=..  ..+...+.+...+..+.++.+|.+
T Consensus        77 --~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~  120 (230)
T 1tqj_A           77 --YVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLN  120 (230)
T ss_dssp             --THHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEEC
T ss_pred             --HHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEe
Confidence              346677789999876554  322222222222345667777763

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.19  E-value=0.02  Score=56.64  Aligned_cols=38  Identities=29%  Similarity=0.275  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      +.+++++|+|+|++|++++..+..+|++|++++|+.+|
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~  207 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT  207 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            45889999999999999999999999999999998754

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=95.19  E-value=0.34  Score=45.91  Aligned_cols=149  Identities=17%  Similarity=0.181  Sum_probs=90.4

Q ss_pred             EecccCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCc-hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHH---HHH
Q 015614           15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHK---RLE   89 (403)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~---~~~   89 (403)
                      +=+...+++++.    .+.+.|||.|||+-++.. ...|. ..++.+++..++|+-+-+|+.  ||.|-.++++   ..+
T Consensus        42 lEvc~~s~~~a~----~A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPR--gGdF~Ys~~E~~~M~~  115 (287)
T 3iwp_A           42 MEVCVDSVESAV----NAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPR--GGDFLYSDREIEVMKA  115 (287)
T ss_dssp             EEEEESSHHHHH----HHHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSS--SSCSCCCHHHHHHHHH
T ss_pred             EEEEeCCHHHHH----HHHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecC--CCCcccCHHHHHHHHH
Confidence            344456666665    445679999999944432 23332 456677777899999999975  6666666533   445


Q ss_pred             HHHHHHHcCCcEEEEec---c--ccchHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614           90 ALHLAEDLGADYVDFEL---K--VASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus        90 ll~~~~~~g~~yvDiEl---~--~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~~  163 (403)
                      -++.+.+.|++.|=+=.   +  .+.+..++|+... +..  =+++|. |+.+++..   +-++...++|.|-|=-.-..
T Consensus       116 dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a-~~l--~vTFHRAFD~~~d~~---~Ale~Li~lGvdrILTSG~~  189 (287)
T 3iwp_A          116 DIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAIC-RPL--PVTFHRAFDMVHDPM---AALETLLTLGFERVLTSGCD  189 (287)
T ss_dssp             HHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHH-TTS--CEEECGGGGGCSCHH---HHHHHHHHHTCSEEEECTTS
T ss_pred             HHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHc-CCC--cEEEECchhccCCHH---HHHHHHHHcCCCEEECCCCC
Confidence            56678889999988753   1  2234455665332 233  357887 88877643   44555666687655443333


Q ss_pred             CCHhHHHHHHHH
Q 015614          164 NDITEIARIFQL  175 (403)
Q Consensus       164 ~~~~D~~~ll~~  175 (403)
                      .+..+.+..++-
T Consensus       190 ~~a~~Gl~~Lk~  201 (287)
T 3iwp_A          190 SSALEGLPLIKR  201 (287)
T ss_dssp             SSTTTTHHHHHH
T ss_pred             CChHHhHHHHHH
Confidence            333444444433

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=95.15  E-value=0.19  Score=45.95  Aligned_cols=118  Identities=20%  Similarity=0.254  Sum_probs=68.0

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (403)
                      |...+...+.+++...++.+.+.|++++|+|..   ..+..+.++.+++..+ .+++-.      |.. .+.    +-++
T Consensus        28 ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~-~~~iga------gtv-l~~----d~~~   92 (225)
T 1mxs_A           28 ILPVITIAREEDILPLADALAAGGIRTLEVTLR---SQHGLKAIQVLREQRP-ELCVGA------GTV-LDR----SMFA   92 (225)
T ss_dssp             EEEEECCSCGGGHHHHHHHHHHTTCCEEEEESS---STHHHHHHHHHHHHCT-TSEEEE------ECC-CSH----HHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecC---CccHHHHHHHHHHhCc-ccEEee------CeE-eeH----HHHH
Confidence            455567788888888888888999999999953   2222344555655542 222211      222 222    2345


Q ss_pred             HHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        93 ~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      .+++.|+++|=.- ....+..+ .  .+..+..+|...|    ||  +|    ..++.+.|+|++|+
T Consensus        93 ~A~~aGAd~v~~p-~~d~~v~~-~--~~~~g~~~i~G~~----t~--~e----~~~A~~~Gad~vk~  145 (225)
T 1mxs_A           93 AVEAAGAQFVVTP-GITEDILE-A--GVDSEIPLLPGIS----TP--SE----IMMGYALGYRRFKL  145 (225)
T ss_dssp             HHHHHTCSSEECS-SCCHHHHH-H--HHHCSSCEECEEC----SH--HH----HHHHHTTTCCEEEE
T ss_pred             HHHHCCCCEEEeC-CCCHHHHH-H--HHHhCCCEEEeeC----CH--HH----HHHHHHCCCCEEEE
Confidence            6788899998543 12222211 1  1123444554455    33  33    34566889999999

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=95.11  E-value=0.75  Score=42.79  Aligned_cols=146  Identities=19%  Similarity=0.206  Sum_probs=90.2

Q ss_pred             cccCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCc-hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH---HHH
Q 015614           17 LMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL---EAL   91 (403)
Q Consensus        17 l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~---~ll   91 (403)
                      +...+++++.    .+.+.|||-|||.-++-. ...|. ..++.+++..++|+.+-+|+.  ||-|-.++++..   +=+
T Consensus         6 vc~~s~~~a~----~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR--~GdF~Ys~~E~~~M~~Di   79 (256)
T 1twd_A            6 ICCYSMECAL----TAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPR--GGDFCYSDGEFAAILEDV   79 (256)
T ss_dssp             EEESSHHHHH----HHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSS--SSCSCCCHHHHHHHHHHH
T ss_pred             EEeCCHHHHH----HHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHHcCCceEEEECCC--CCCCcCCHHHHHHHHHHH
Confidence            3445666664    445689999999987643 33443 345566777899999999964  566666664433   334


Q ss_pred             HHHHHcCCcEEEEecc-----ccchHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEee--c
Q 015614           92 HLAEDLGADYVDFELK-----VASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFS--V  163 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~-----~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~--~  163 (403)
                      +.+.++|++-|=+=.-     .+.+..++|+.. .++..  +.||- |+.+++..   +-++.+.++|.+  +|-+.  +
T Consensus        80 ~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~-a~~~~--vTFHRAfD~~~d~~---~ale~L~~lG~~--rILTSG~~  151 (256)
T 1twd_A           80 RTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAA-AGPLA--VTFHRAFDMCANPL---YTLNNLAELGIA--RVLTSGQK  151 (256)
T ss_dssp             HHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHH-HTTSE--EEECGGGGGCSCHH---HHHHHHHHHTCC--EEEECTTS
T ss_pred             HHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHH-hCCCc--EEEECchhccCCHH---HHHHHHHHcCCC--EEECCCCC
Confidence            5677889998766332     223445666633 13444  67776 88887554   446666677855  33344  3


Q ss_pred             CCHhHHHHHHHHh
Q 015614          164 NDITEIARIFQLL  176 (403)
Q Consensus       164 ~~~~D~~~ll~~~  176 (403)
                      .+..|.+.+++-+
T Consensus       152 ~~a~~g~~~L~~L  164 (256)
T 1twd_A          152 SDALQGLSKIMEL  164 (256)
T ss_dssp             SSTTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            4555665555544

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.85  E-value=0.017  Score=55.30  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            456899999999999999999999999 99999976

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.70  E-value=0.018  Score=56.88  Aligned_cols=37  Identities=35%  Similarity=0.426  Sum_probs=33.8

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +.+++++|+|+|++|++++..++.+|++|++++|+.+
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~  202 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINID  202 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5689999999999999999999999999999998753

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.64  E-value=0.018  Score=56.58  Aligned_cols=37  Identities=32%  Similarity=0.412  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +++++++|+|+|++|++++..++.+|++|++++|+.+
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~  200 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHK  200 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            5678999999999999999999999999999998753

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=94.63  E-value=0.65  Score=42.38  Aligned_cols=138  Identities=16%  Similarity=0.207  Sum_probs=85.2

Q ss_pred             HHHhcCCCEEEEEecCCC-CCCCc-hHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHH---HHHHHHHHcCCcEE
Q 015614           31 QAKAEGADVVEIRLDCIN-NFQPG-KDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRL---EALHLAEDLGADYV  102 (403)
Q Consensus        31 ~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~---~ll~~~~~~g~~yv  102 (403)
                      .+.+.|||-|||.-++-. ...|+ ..++..+   +..++|+.+-+|++  ||-|-.++++..   +=++.+.++|++-|
T Consensus        16 ~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~~~~ipV~vMIRPR--~GdF~Ys~~E~~~M~~Di~~~~~~GadGv   93 (224)
T 2bdq_A           16 RLDKAIISRVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRPR--GGNFVYNDLELRIMEEDILRAVELESDAL   93 (224)
T ss_dssp             GCCTTTCCEEEEEBCGGGTCBCCCHHHHHHHHHHHHHTTCEEEEECCSS--SSCSCCCHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHcCCCEEEEcCCcccCCcCCCHHHHHHHHHhhhhcCCceEEEECCC--CCCCcCCHHHHHHHHHHHHHHHHcCCCEE
Confidence            456789999999987643 33443 3455566   67899999999965  566666664433   33456778899987


Q ss_pred             EEeccc-----cchHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEee--cCC--HhHHHHH
Q 015614          103 DFELKV-----ASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFS--VND--ITEIARI  172 (403)
Q Consensus       103 DiEl~~-----~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~--~~~--~~D~~~l  172 (403)
                      =+=.-.     +.+..++|+..- ++..  +.||- |+.+|. .+..+-++.+.++|.+  +|-+.  +.+  ..|.+..
T Consensus        94 V~G~Lt~dg~iD~~~~~~Li~~a-~~~~--vTFHRAFD~~~~-~d~~~ale~L~~lGv~--rILTSG~~~~~~a~~g~~~  167 (224)
T 2bdq_A           94 VLGILTSNNHIDTEAIEQLLPAT-QGLP--LVFHMAFDVIPK-SDQKKSIDQLVALGFT--RILLHGSSNGEPIIENIKH  167 (224)
T ss_dssp             EECCBCTTSSBCHHHHHHHHHHH-TTCC--EEECGGGGGSCT-TTHHHHHHHHHHTTCC--EEEECSCSSCCCGGGGHHH
T ss_pred             EEeeECCCCCcCHHHHHHHHHHh-CCCe--EEEECchhccCC-cCHHHHHHHHHHcCCC--EEECCCCCCCCcHHHHHHH
Confidence            763222     234456666331 2333  67786 888842 2345557888888865  33333  233  5566555


Q ss_pred             HHHh
Q 015614          173 FQLL  176 (403)
Q Consensus       173 l~~~  176 (403)
                      ++-+
T Consensus       168 L~~L  171 (224)
T 2bdq_A          168 IKAL  171 (224)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=94.61  E-value=0.044  Score=53.95  Aligned_cols=56  Identities=25%  Similarity=0.412  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHhc-CcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          339 CEASITAIEDAIKER-GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +.|+....++.+.+. +        ...++|++++|+|.|.+|+.++..|.++|++|.+++|+.+
T Consensus       151 g~GV~~~~~~~~~~~~G--------~~~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~  207 (364)
T 1leh_A          151 AYGVYRGMKAAAKEAFG--------SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKA  207 (364)
T ss_dssp             HHHHHHHHHHHHHHHHS--------SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             hhHHHHHHHHHHHhhcc--------ccCCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            347776666655431 2        1257899999999999999999999999999989998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.57  E-value=0.025  Score=56.47  Aligned_cols=37  Identities=35%  Similarity=0.295  Sum_probs=33.8

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +.+++++|+|+|++|++++..+..+|++|++++|+.+
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            3578999999999999999999999999999999864

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.48  E-value=0.029  Score=54.98  Aligned_cols=33  Identities=24%  Similarity=0.507  Sum_probs=31.2

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++|+|+|+||.|.+++..|+..|+ +|+|++++
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            5799999999999999999999999 99999986

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=94.48  E-value=1  Score=43.86  Aligned_cols=93  Identities=13%  Similarity=0.140  Sum_probs=65.3

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCC---------C-C--CC---chHHHHHHhcCCCcEEEEeecCCC
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN---------N-F--QP---GKDLEIILTKKPLPVLIVYRPKWA   76 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~---------~-~--~~---~~~l~~l~~~~~~PiI~T~R~~~e   76 (403)
                      .+++.|.+.+.+++..-++.+.+.|+|.|||-..+=.         . +  ++   .+.+..+++..++|+.+-+|..++
T Consensus        59 p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~  138 (350)
T 3b0p_A           59 PIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLE  138 (350)
T ss_dssp             SEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBT
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcC
Confidence            4678888999998888888887889999999885311         0 0  11   133445556678999888885322


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015614           77 GGLYEGDEHKRLEALHLAEDLGADYVDFELK  107 (403)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~  107 (403)
                         -..+.+...++.+.+.+.|+++|.|.-.
T Consensus       139 ---~~~~~~~~~~~a~~l~~aG~d~I~V~~r  166 (350)
T 3b0p_A          139 ---GKETYRGLAQSVEAMAEAGVKVFVVHAR  166 (350)
T ss_dssp             ---TCCCHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             ---ccccHHHHHHHHHHHHHcCCCEEEEecC
Confidence               1123456778888889999999998643

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=94.39  E-value=0.026  Score=53.43  Aligned_cols=38  Identities=34%  Similarity=0.375  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .++||.+||-|+ +|.++|++..|++.|++|.+++|+.+
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~   64 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKD   64 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            378999999985 88999999999999999999999753

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.32  E-value=0.041  Score=51.52  Aligned_cols=39  Identities=33%  Similarity=0.583  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   69 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGS   69 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            467899999985 899999999999999999999998653

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.12  E-value=0.049  Score=51.04  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   67 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSD   67 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999995 88999999999999999999999754

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=94.11  E-value=0.078  Score=53.24  Aligned_cols=38  Identities=26%  Similarity=0.419  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|++++|+|.|..|++++..|...|++|++++|++
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            45789999999999999999999999999999999874

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=94.09  E-value=0.97  Score=41.49  Aligned_cols=119  Identities=15%  Similarity=0.234  Sum_probs=74.9

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      .|+..+...+.+++..-++.+...|+++||+++.--.   ..+.++.+++..+-.+|-.      |...  +.    +-.
T Consensus        35 ~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~---a~e~I~~l~~~~~~~~iGa------GTVl--t~----~~a   99 (232)
T 4e38_A           35 KVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDA---AVEAIRLLRQAQPEMLIGA------GTIL--NG----EQA   99 (232)
T ss_dssp             CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTT---HHHHHHHHHHHCTTCEEEE------ECCC--SH----HHH
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC---HHHHHHHHHHhCCCCEEeE------CCcC--CH----HHH
Confidence            3566778889999998888889999999999887322   2356667776654444421      2222  22    234


Q ss_pred             HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +.+++.|+++|=.- .+..+..+.   .++.+..+|--..    ||  +|    ..++.++|+|++|+
T Consensus       100 ~~Ai~AGA~fIvsP-~~~~~vi~~---~~~~gi~~ipGv~----Tp--tE----i~~A~~~Gad~vK~  153 (232)
T 4e38_A          100 LAAKEAGATFVVSP-GFNPNTVRA---CQEIGIDIVPGVN----NP--ST----VEAALEMGLTTLKF  153 (232)
T ss_dssp             HHHHHHTCSEEECS-SCCHHHHHH---HHHHTCEEECEEC----SH--HH----HHHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEEEeC-CCCHHHHHH---HHHcCCCEEcCCC----CH--HH----HHHHHHcCCCEEEE
Confidence            57788899998432 122223322   2234677776654    44  23    34456789999998

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=94.01  E-value=3  Score=42.15  Aligned_cols=203  Identities=14%  Similarity=0.058  Sum_probs=122.9

Q ss_pred             HHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614           29 MYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD  100 (403)
Q Consensus        29 ~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~  100 (403)
                      ++...+.|.+.||.-    .|.   +-..++.+.++.+++. .+.++..-+|..+-=|.....++-..+.++.+.+.|++
T Consensus        36 a~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~Gvd  115 (464)
T 2nx9_A           36 AQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMD  115 (464)
T ss_dssp             HHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHHHHHhCCcC
Confidence            344455799999996    231   1122445667777764 35566666786655565455565566778899999999


Q ss_pred             EEEEeccccc--hHHHHHHhccCCCcEEEEeccCCCCCC-CHhHHHHHHHHHHHcCCCEEEEEeecC--CHhHHHHHHHH
Q 015614          101 YVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETP-SEEDLGYLVSRMQATGADIIKLVFSVN--DITEIARIFQL  175 (403)
Q Consensus       101 yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp-~~~~l~~~~~~~~~~gadivKia~~~~--~~~D~~~ll~~  175 (403)
                      .|-|=....+  .....+...+..+.++.++.|.+..++ +.+.+.++.+++.+.|||++-|+=|.-  ++.++.++.+.
T Consensus       116 ~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~  195 (464)
T 2nx9_A          116 VFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVST  195 (464)
T ss_dssp             EEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHH
T ss_pred             EEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHH
Confidence            9887544322  222222234456778888887766666 567799999999999999999886653  58888888777


Q ss_pred             hcc-CCCCEEEEE--cCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhhh
Q 015614          176 LSH-CQVPIIAYS--VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (403)
Q Consensus       176 ~~~-~~~p~i~~~--MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~~  231 (403)
                      +.+ .+.|+-.=+  ..-.+...-+..-.-|....=+++.. +--.||++++++...++.
T Consensus       196 l~~~~~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti~g~gertGN~~lE~lv~~L~~  255 (464)
T 2nx9_A          196 LKKQVDVELHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSGTYGHPATESLVATLQG  255 (464)
T ss_dssp             HHHHCCSCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSCCBHHHHHHHHTT
T ss_pred             HHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCcCHHHHHHHHHHHh
Confidence            543 345532211  22223333333222333333233321 123688888887766653

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=93.98  E-value=0.048  Score=57.09  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++++|+|+|+||.|.+++..|+..|+ +|+|++++
T Consensus       324 L~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D  359 (615)
T 4gsl_A          324 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  359 (615)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            467899999999999999999999999 99999986

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=93.90  E-value=1.2  Score=40.13  Aligned_cols=106  Identities=12%  Similarity=0.178  Sum_probs=67.2

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEe-cC--CCCCCC-chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DC--INNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~--l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      +|+-+|..-|..++...++.+.+.|+|++|+|+ |-  .+..+. .+.++.+++.++.|+.+.+--.        +.+  
T Consensus        12 ~i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vn--------d~~--   81 (230)
T 1rpx_A           12 IVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIV--------EPD--   81 (230)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESS--------SHH--
T ss_pred             EEEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEec--------CHH--
Confidence            478888999998888888888888999999997 42  222221 2567778777677887776422        122  


Q ss_pred             HHHHHHHHHcCCcEEEEecc--ccch---HHHHHHhccCCCcEEEEecc
Q 015614           88 LEALHLAEDLGADYVDFELK--VASN---ILGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~--~~~~---~~~~l~~~~~~~~kiI~S~H  131 (403)
                       +.++.+.+.|+++|=+-..  ..+.   ..+.+   ++.+.+++++.+
T Consensus        82 -~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~---~~~g~~ig~~~~  126 (230)
T 1rpx_A           82 -QRVPDFIKAGADIVSVHCEQSSTIHLHRTINQI---KSLGAKAGVVLN  126 (230)
T ss_dssp             -HHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHH---HHTTSEEEEEEC
T ss_pred             -HHHHHHHHcCCCEEEEEecCccchhHHHHHHHH---HHcCCcEEEEeC
Confidence             3455667788888755444  2222   22222   223556677765

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.86  E-value=0.053  Score=49.74  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++++||+|+|.+|...+..|.+.|++|+|++++.
T Consensus        27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             ECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            35789999999999999999999999999999998764

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=93.80  E-value=0.15  Score=50.06  Aligned_cols=54  Identities=28%  Similarity=0.451  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCcCCC-CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          338 DCEASITAIEDAIKERGYKNGTASFGS-PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       338 D~~G~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      -+.|....++..+.+.+         . .++||+++|.|.|..|+.++..|.++|++|.+.+++
T Consensus       153 Tg~Gv~~~~~~~~~~~G---------~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~  207 (355)
T 1c1d_A          153 TAVGVFEAMKATVAHRG---------LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD  207 (355)
T ss_dssp             HHHHHHHHHHHHHHHTT---------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHHHHHHHHhcC---------CCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35688888888776432         3 578999999999999999999999999998888765

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=93.76  E-value=0.041  Score=51.10  Aligned_cols=39  Identities=23%  Similarity=0.217  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   62 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH   62 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            3467899999985 88999999999999999999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.73  E-value=0.03  Score=48.87  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHC-CCeEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~-g~~i~v~nR~~~  402 (403)
                      ..+++++|+|+|..|+.++..|.+. |.+|++++|+++
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            4567899999999999999999999 999999999754

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=93.72  E-value=0.12  Score=49.10  Aligned_cols=122  Identities=17%  Similarity=0.220  Sum_probs=75.7

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccch-----HHHHccc------ccCCHHHhhcccee
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFC------DEVHPLAQAIAAVN  321 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K-----~~v~~~~------d~~~~~A~~igavN  321 (403)
                      ....+++|+......++.    +++.+.++.+ .++.+.|+-|-.|.-     +.++..+      |-+++.-  +|.. 
T Consensus        55 ~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n--~g~l-  131 (288)
T 1b0a_A           55 RKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYN--VGRL-  131 (288)
T ss_dssp             HHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHH--HHHH-
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccc--hhHH-
Confidence            345688999876555532    3566667767 568899999999963     2222222      1111100  0000 


Q ss_pred             EEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecC
Q 015614          322 TIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       322 Ti~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~  400 (403)
                        ...  +..+  .-.--.|++..|++.             +.+++|++++|+|+|+ +++.++.-|...|+.|++++++
T Consensus       132 --~~g--~~~~--~PcTp~gi~~ll~~~-------------~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  192 (288)
T 1b0a_A          132 --CQR--APRL--RPCTPRGIVTLLERY-------------NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF  192 (288)
T ss_dssp             --HTT--CCSS--CCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred             --hCC--CCCC--CCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence              000  0000  112345777776653             2568899999999998 5999999999999999999875


Q ss_pred             C
Q 015614          401 F  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       193 t  193 (288)
T 1b0a_A          193 T  193 (288)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=93.61  E-value=0.053  Score=50.48  Aligned_cols=38  Identities=32%  Similarity=0.574  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++|+++|-|+ ||.|++++..|++.|++|+++.|+.+
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~   63 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVA   63 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999985 88999999999999999999999764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=93.61  E-value=0.051  Score=51.50  Aligned_cols=39  Identities=26%  Similarity=0.310  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   76 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPR   76 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3467899999985 88999999999999999999999854

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.59  E-value=0.083  Score=51.41  Aligned_cols=39  Identities=36%  Similarity=0.501  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~   80 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQ   80 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChh
Confidence            3567999999985 89999999999999999999999865

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=93.55  E-value=0.12  Score=49.46  Aligned_cols=124  Identities=16%  Similarity=0.297  Sum_probs=75.4

Q ss_pred             HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHH----HHcccccCCHHHhhcc---ceeE--EE
Q 015614          259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEA----VMKFCDEVHPLAQAIA---AVNT--II  324 (403)
Q Consensus       259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~----v~~~~d~~~~~A~~ig---avNT--i~  324 (403)
                      ...+++|+......++.    +++.+.++.+ .++.+.|+-|-.|.-..    --..++.++|. +.+-   -.|.  +.
T Consensus        58 k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~-KDVDG~hp~N~G~l~  136 (301)
T 1a4i_A           58 KAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE-KDVDGLTSINAGRLA  136 (301)
T ss_dssp             HHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGG-GBTTCCSHHHHHHHH
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCC-CCccCCChhhHHHHh
Confidence            45678999877655543    3566667777 56889999999987321    11111111111 0000   0011  00


Q ss_pred             EeccC--CeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecC
Q 015614          325 RRPSD--GKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       325 ~~~~~--g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~  400 (403)
                      ..  +  ..+  .-.--.|++..|++.             +.+++|++++|+|+|. +++.++.-|...|+.|++++++
T Consensus       137 ~g--~~~~~~--~PcTp~gi~~ll~~~-------------~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          137 RG--DLNDCF--IPCTPKGCLELIKET-------------GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             TT--CCSSCC--CCHHHHHHHHHHHTT-------------TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cC--CCCCCc--cCchHHHHHHHHHHc-------------CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            00  0  000  112356777776543             2568899999999997 6999999999999999999764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=93.54  E-value=0.12  Score=52.26  Aligned_cols=38  Identities=32%  Similarity=0.496  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.||+++|+|.|..|++++..|..+|++|++++|++
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            56789999999999999999999999999999998864

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=93.48  E-value=0.078  Score=49.11  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   63 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIK   63 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            45789999985 88999999999999999999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.46  E-value=0.039  Score=49.85  Aligned_cols=36  Identities=22%  Similarity=0.211  Sum_probs=31.4

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ...++.|+|+|..|++++..|.+.|.+|++++|+.+
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~   62 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPK   62 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            456899999999999999999999999999999753

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=93.41  E-value=0.037  Score=51.63  Aligned_cols=37  Identities=30%  Similarity=0.462  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            467899999995 8899999999999999999999974

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.39  E-value=0.053  Score=53.70  Aligned_cols=37  Identities=24%  Similarity=0.246  Sum_probs=33.8

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +++++++|+|+|.+|+.++..+..+|++|++++|+++
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578999999999999999999999999999999865

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=93.27  E-value=0.045  Score=50.59  Aligned_cols=37  Identities=43%  Similarity=0.565  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++|++||.|+ ||.|++++..|.+.|++|++++|+.
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV   63 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            467899999985 8899999999999999999999974

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.26  E-value=0.048  Score=52.36  Aligned_cols=36  Identities=17%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+++.|||+|.+|++++..|.+.|.+|++++|+++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            346899999999999999999999999999999864

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=93.26  E-value=0.12  Score=49.00  Aligned_cols=122  Identities=19%  Similarity=0.301  Sum_probs=75.5

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchH-----HHHccc------ccCCHHHhhcccee
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKE-----AVMKFC------DEVHPLAQAIAAVN  321 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~-----~v~~~~------d~~~~~A~~igavN  321 (403)
                      ....+++|+......++.    +++.+.++.+ .++.+.|+-|-.|.-.     .++..+      |-+++.-  +|-  
T Consensus        54 ~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~KDVDG~~p~n--~g~--  129 (281)
T 2c2x_A           54 HADCAKVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTN--LGR--  129 (281)
T ss_dssp             HHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGBTTSCCHHH--HHH--
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCccCCccCCChhh--HHH--
Confidence            345688999877655542    3566666666 5688999999999732     222211      1111100  000  


Q ss_pred             EEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHC--CCeEEEEe
Q 015614          322 TIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSR--GARVVIFD  398 (403)
Q Consensus       322 Ti~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~--g~~i~v~n  398 (403)
                       +...  +..+  .-.--.|++..|++.             +.+++|++++|+|+|.. ++.++.-|...  |+.|++++
T Consensus       130 -l~~g--~~~~--~PcTp~gi~~ll~~~-------------~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h  191 (281)
T 2c2x_A          130 -LVLG--TPAP--LPCTPRGIVHLLRRY-------------DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCH  191 (281)
T ss_dssp             -HHHT--CCCC--CCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEEC
T ss_pred             -HhCC--CCCC--CCChHHHHHHHHHHc-------------CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence             0000  0000  112345666766553             24688999999999985 99999999999  78999998


Q ss_pred             cCC
Q 015614          399 IDF  401 (403)
Q Consensus       399 R~~  401 (403)
                      |+.
T Consensus       192 ~~t  194 (281)
T 2c2x_A          192 TGT  194 (281)
T ss_dssp             TTC
T ss_pred             Cch
Confidence            864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.25  E-value=0.15  Score=50.40  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      .++..+++|+|||-++.+++..|..+|+ +|+++||+
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            5677899999999999999999999999 89999998

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=93.21  E-value=0.096  Score=49.46  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcch---hHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaG---Gaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++|+++|.|++   |.|++++..|.+.|++|+++.|+.
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            34678999999985   899999999999999999999874

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=93.21  E-value=0.11  Score=49.89  Aligned_cols=39  Identities=33%  Similarity=0.308  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  178 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPK  178 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            356789999999999999999999999999999999865

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=93.14  E-value=0.099  Score=50.68  Aligned_cols=39  Identities=23%  Similarity=0.320  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.++++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            357789999999999999999999999999999999865

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=93.13  E-value=1.9  Score=39.85  Aligned_cols=111  Identities=13%  Similarity=0.061  Sum_probs=76.0

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecC--C-CCCCC-chHHHHHHhcC-CCcEEEEeecCCCCCCCCCCH
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC--I-NNFQP-GKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDE   84 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~--l-~~~~~-~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~   84 (403)
                      +++|+-||..-|...+..+++...+.|+|.+.+++=-  | ++... .+.++.+|+.+ ++|+-+.+-..        +.
T Consensus        27 ~~~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~--------~p   98 (246)
T 3inp_A           27 HIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVK--------PV   98 (246)
T ss_dssp             CCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECS--------SC
T ss_pred             CCeeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeC--------CH
Confidence            3789999999999888888888878899999886521  1 22221 25688888888 89999887742        12


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEecc
Q 015614           85 HKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        85 ~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H  131 (403)
                      +.|   ++.+++.|+++|-+=....+...+.+...++.+.|+.++.+
T Consensus        99 ~~~---i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvaln  142 (246)
T 3inp_A           99 DAL---IESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALN  142 (246)
T ss_dssp             HHH---HHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEEC
T ss_pred             HHH---HHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEec
Confidence            333   56678889999988655444333333334456777777765

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.12  E-value=0.098  Score=49.27  Aligned_cols=37  Identities=30%  Similarity=0.538  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++|++||.|+ ||.|++++..|.+.|++|.++.|+.
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467899999995 8899999999999999999999875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=93.10  E-value=0.06  Score=51.02  Aligned_cols=37  Identities=41%  Similarity=0.568  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~   65 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQ   65 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            367899999995 8899999999999999999999974

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=93.09  E-value=0.06  Score=50.39  Aligned_cols=37  Identities=41%  Similarity=0.608  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~   63 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDA   63 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            467899999995 8899999999999999999999874

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=93.02  E-value=0.046  Score=51.31  Aligned_cols=37  Identities=35%  Similarity=0.514  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++|+++|.| +||.|++++..|.+.|++|++++|+.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   63 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDG   63 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46789999998 58999999999999999999999974

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=92.93  E-value=1.9  Score=41.37  Aligned_cols=146  Identities=17%  Similarity=0.224  Sum_probs=88.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-C-------CchHH-------HHHHhcCCCcEEEEeecCCCCCCCCCC
Q 015614           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-Q-------PGKDL-------EIILTKKPLPVLIVYRPKWAGGLYEGD   83 (403)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~-------~~~~l-------~~l~~~~~~PiI~T~R~~~eGG~~~~~   83 (403)
                      ..+.+++++.+++..+.|||+|.+-...-.+- +       ..+++       +.+++..+.||-  +-|          
T Consensus        45 ~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpIS--IDT----------  112 (314)
T 3tr9_A           45 HLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLIS--VDT----------  112 (314)
T ss_dssp             CCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEE--EEC----------
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEE--EeC----------
Confidence            45678899999888999999999987544321 1       12222       333344455543  332          


Q ss_pred             HHHHHHHHHHHHHcCCcEE-EEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCH--------------hHHHHHHHH
Q 015614           84 EHKRLEALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE--------------EDLGYLVSR  148 (403)
Q Consensus        84 ~~~~~~ll~~~~~~g~~yv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~--------------~~l~~~~~~  148 (403)
                        .+-+.+++|++.|+++| ||--...++.++.+.   +.+..+|+. |+ .++|..              +.+.+.+++
T Consensus       113 --~~~~Va~aAl~aGa~iINDVsg~~~~~m~~v~a---~~g~~vVlM-h~-~G~P~tmq~~~~ydvv~ev~~~l~~~i~~  185 (314)
T 3tr9_A          113 --SRPRVMREAVNTGADMINDQRALQLDDALTTVS---ALKTPVCLM-HF-PSETRKPGSTTHFYFLQSVKKELQESIQR  185 (314)
T ss_dssp             --SCHHHHHHHHHHTCCEEEETTTTCSTTHHHHHH---HHTCCEEEE-CC-CCTTCCTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHcCCCEEEECCCCCchHHHHHHH---HhCCeEEEE-CC-CCCCcccccccccchHHHHHHHHHHHHHH
Confidence              23467788899998876 443333333433222   245678875 43 455532              346777888


Q ss_pred             HHHcCCCEEEEE-----e---ecCCHhHHHHHHHHhc---cCCCCE
Q 015614          149 MQATGADIIKLV-----F---SVNDITEIARIFQLLS---HCQVPI  183 (403)
Q Consensus       149 ~~~~gadivKia-----~---~~~~~~D~~~ll~~~~---~~~~p~  183 (403)
                      +.+.|.+-=+|.     -   ...+.++++.+++-+.   ..+.|+
T Consensus       186 a~~~GI~~~~IilDPG~G~~~F~Kt~~~n~~lL~~l~~l~~lg~Pv  231 (314)
T 3tr9_A          186 CKKAGISEDRIIIDPGFGQGNYGKNVSENFYLLNKLPEFVAMGLPV  231 (314)
T ss_dssp             HHHTTCCGGGEEEECCCCSGGGCCCHHHHHHHHHTTHHHHTTSSCB
T ss_pred             HHHcCCCHhHEEEeCCCCchhhcCCHHHHHHHHHHHHHHhcCCCCE
Confidence            889886422333     2   5677888988887754   346675

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=92.91  E-value=0.042  Score=51.63  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRP   67 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467899999985 8899999999999999999999974

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=92.89  E-value=5.5  Score=38.41  Aligned_cols=195  Identities=14%  Similarity=0.137  Sum_probs=114.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEE-ecCCC---------CCCCchHHHHHHhcC-CCcEEEE-eecCCCCCCCCCCHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIR-LDCIN---------NFQPGKDLEIILTKK-PLPVLIV-YRPKWAGGLYEGDEHKRL   88 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElR-lD~l~---------~~~~~~~l~~l~~~~-~~PiI~T-~R~~~eGG~~~~~~~~~~   88 (403)
                      +.++.++-++...+.|+|.||+= .|-|.         ..++.+.++.+++.. +.|+.+- ++.     .  ..    .
T Consensus        28 ~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~-----~--~~----~   96 (345)
T 1nvm_A           28 TLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPG-----I--GS----V   96 (345)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBT-----T--BC----H
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCC-----c--cc----H
Confidence            34555555556566899999993 11111         112345666666543 5565543 331     1  11    2


Q ss_pred             HHHHHHHHcCCcEEEEeccccc-hHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec--C
Q 015614           89 EALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV--N  164 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~--~  164 (403)
                      +.++.+.+.|++.|-|-....+ +...+.+ ..++.+..++.+.-+...+ +.+.+.++.+++.++|++++-++=+.  .
T Consensus        97 ~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~-~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~  175 (345)
T 1nvm_A           97 HDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMI-PAEKLAEQGKLMESYGATCIYMADSGGAM  175 (345)
T ss_dssp             HHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSS-CHHHHHHHHHHHHHHTCSEEEEECTTCCC
T ss_pred             HHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCC-CHHHHHHHHHHHHHCCCCEEEECCCcCcc
Confidence            4678888999998887543321 1222222 2334567888887554333 35779999999999999998888554  3


Q ss_pred             CHhHHHHHHHHhcc-C--CCCEEEE------EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhhh
Q 015614          165 DITEIARIFQLLSH-C--QVPIIAY------SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (403)
Q Consensus       165 ~~~D~~~ll~~~~~-~--~~p~i~~------~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~~  231 (403)
                      ++.++.++++.+.+ .  +.| +++      +||-   ..-+..-..|....=+++.. +...||++++++...++.
T Consensus       176 ~P~~v~~lv~~l~~~~~~~~p-i~~H~Hn~~G~av---An~laA~~aGa~~vd~tv~GlG~~aGN~~le~lv~~L~~  248 (345)
T 1nvm_A          176 SMNDIRDRMRAFKAVLKPETQ-VGMHAHHNLSLGV---ANSIVAVEEGCDRVDASLAGMGAGAGNAPLEVFIAVAER  248 (345)
T ss_dssp             CHHHHHHHHHHHHHHSCTTSE-EEEECBCTTSCHH---HHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCce-EEEEECCCccHHH---HHHHHHHHcCCCEEEecchhccCCccCcCHHHHHHHHHh
Confidence            58888888877643 3  344 444      4433   33333333343333344332 235799999988766653

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=92.87  E-value=0.94  Score=40.08  Aligned_cols=105  Identities=12%  Similarity=0.076  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614           24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD  100 (403)
Q Consensus        24 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~  100 (403)
                      +....++.+.+.|+|+|++|.-........+.++.++   +..+.|+++.               +   .++.+.+.|++
T Consensus        27 ~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~---------------~---~~~~a~~~gad   88 (215)
T 1xi3_A           27 PEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVD---------------D---RVDVALAVDAD   88 (215)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEE---------------S---CHHHHHHHTCS
T ss_pred             hHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeEEEc---------------C---hHHHHHHcCCC
Confidence            4445556666789999999952221100012223333   2346787763               0   12456678999


Q ss_pred             EEEEecc-ccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614          101 YVDFELK-VASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus       101 yvDiEl~-~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      +|=++.. .+.+..+++   . .+..+.+|.|+      .+++    .++.+.|+|++++-
T Consensus        89 ~v~l~~~~~~~~~~~~~---~-~~~~~~v~~~t------~~e~----~~~~~~g~d~i~~~  135 (215)
T 1xi3_A           89 GVQLGPEDMPIEVAKEI---A-PNLIIGASVYS------LEEA----LEAEKKGADYLGAG  135 (215)
T ss_dssp             EEEECTTSCCHHHHHHH---C-TTSEEEEEESS------HHHH----HHHHHHTCSEEEEE
T ss_pred             EEEECCccCCHHHHHHh---C-CCCEEEEecCC------HHHH----HHHHhcCCCEEEEc
Confidence            9977632 222223332   2 45567777763      2343    23456799999973

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=92.85  E-value=0.12  Score=50.23  Aligned_cols=39  Identities=21%  Similarity=0.262  Sum_probs=35.6

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.++++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~  198 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKK  198 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCch
Confidence            357789999999999999999999999999999999865

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=92.80  E-value=0.058  Score=50.21  Aligned_cols=38  Identities=34%  Similarity=0.434  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|.++.|+.
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   61 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTRE   61 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4577899999985 8899999999999999999999874

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=92.80  E-value=0.084  Score=48.99  Aligned_cols=38  Identities=32%  Similarity=0.460  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++|+++|.| +||.|++++..|.+.|++|+++.|+.+
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   69 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHP   69 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36789999998 588999999999999999999999764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.80  E-value=0.12  Score=48.31  Aligned_cols=38  Identities=21%  Similarity=0.266  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4fc7_A           23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSL   61 (277)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3467999999995 7899999999999999999999974

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=92.79  E-value=0.12  Score=49.64  Aligned_cols=39  Identities=28%  Similarity=0.372  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  176 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDI  176 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            457899999999999999999999999999999999864

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.76  E-value=0.043  Score=51.31  Aligned_cols=38  Identities=39%  Similarity=0.562  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++|+++|-|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~   60 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDP   60 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3577899999985 8899999999999999999999874

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=92.74  E-value=2.6  Score=38.23  Aligned_cols=140  Identities=19%  Similarity=0.181  Sum_probs=88.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHh---cCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT---KKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (403)
                      .+.+++.+.++++.+.+++.|=+        .+. .+...++   .++++ +.|+=.-+.|-   .+.+.+..=.+.|++
T Consensus        16 ~t~~~i~~l~~~a~~~~~~aVcv--------~p~-~v~~~~~~l~~~~v~-v~~vigFP~G~---~~~~~k~~e~~~Ai~   82 (220)
T 1ub3_A           16 ATLEEVAKAAEEALEYGFYGLCI--------PPS-YVAWVRARYPHAPFR-LVTVVGFPLGY---QEKEVKALEAALACA   82 (220)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEC--------CGG-GHHHHHHHCTTCSSE-EEEEESTTTCC---SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEE--------CHH-HHHHHHHHhCCCCce-EEEEecCCCCC---CchHHHHHHHHHHHH
Confidence            35788888888888888888754        221 3333332   23444 33443323332   234566666789999


Q ss_pred             cCCcEEEEeccccc----------hHHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe--e-
Q 015614           97 LGADYVDFELKVAS----------NILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF--S-  162 (403)
Q Consensus        97 ~g~~yvDiEl~~~~----------~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~--~-  162 (403)
                      .|++-||+=++...          +.+.++.. .+....|+|+-.-.    ++.+++....+-+.+.|||+||--+  . 
T Consensus        83 ~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~----l~~e~i~~a~~ia~eaGADfVKTsTGf~~  158 (220)
T 1ub3_A           83 RGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGY----FSPEEIARLAEAAIRGGADFLKTSTGFGP  158 (220)
T ss_dssp             TTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGG----SCHHHHHHHHHHHHHHTCSEEECCCSSSS
T ss_pred             cCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCC
Confidence            99999999665431          12233332 33457888876543    3467788888888899999999884  2 


Q ss_pred             -cCCHhHHHHHHHHh
Q 015614          163 -VNDITEIARIFQLL  176 (403)
Q Consensus       163 -~~~~~D~~~ll~~~  176 (403)
                       ..+.+|+..+.+..
T Consensus       159 ~gat~~dv~~m~~~v  173 (220)
T 1ub3_A          159 RGASLEDVALLVRVA  173 (220)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhh
Confidence             23677887766554

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=92.73  E-value=0.16  Score=49.07  Aligned_cols=39  Identities=28%  Similarity=0.408  Sum_probs=35.8

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|+.++|+.+
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~  171 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGH  171 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            457899999999999999999999999999999999864

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=92.72  E-value=0.87  Score=41.61  Aligned_cols=68  Identities=9%  Similarity=0.128  Sum_probs=51.4

Q ss_pred             CCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEe-cCC--CCCCC-chHHHHHHhcC-CCcEEEEeecC
Q 015614            7 TKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DCI--NNFQP-GKDLEIILTKK-PLPVLIVYRPK   74 (403)
Q Consensus         7 ~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~l--~~~~~-~~~l~~l~~~~-~~PiI~T~R~~   74 (403)
                      -..+++|+-||..-|...+..+++.+.+.|+|.+.+++ |--  ++.+. ...++.+|+.+ +.|+.+.+-..
T Consensus         2 ~~~~~~i~pSila~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~   74 (227)
T 1tqx_A            2 GTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVE   74 (227)
T ss_dssp             --CCCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESS
T ss_pred             CCCCCeEEeehhcCChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEc
Confidence            34678899999999999998888888788999998876 422  22222 25788888888 88999888753

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=92.70  E-value=0.051  Score=50.90  Aligned_cols=37  Identities=32%  Similarity=0.518  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..++++++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~   62 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   62 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            357899999996 8999999999999999999999974

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=92.58  E-value=0.14  Score=47.78  Aligned_cols=38  Identities=34%  Similarity=0.440  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++|+++|-|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNE   61 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3567899999985 8899999999999999999999874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=92.58  E-value=0.12  Score=50.02  Aligned_cols=39  Identities=21%  Similarity=0.209  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.++++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  189 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP  189 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            356789999999999999999999999999999998764

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=92.57  E-value=1.4  Score=40.37  Aligned_cols=108  Identities=12%  Similarity=0.072  Sum_probs=74.5

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEe-cCC--CCCCC-chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DCI--NNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~l--~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      +|+-||..-|...+..+++.+ +.|+|.+++++ |--  ++.+. ...++.+|+.++.|+.+.+-..        +.+. 
T Consensus         2 ~i~pSila~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~--------dp~~-   71 (231)
T 3ctl_A            2 KISPSLMCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVT--------RPQD-   71 (231)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESS--------CGGG-
T ss_pred             eEEeehhhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEec--------CHHH-
Confidence            478899999998888888887 89999999875 421  22221 2577888887889999998864        1233 


Q ss_pred             HHHHHHHHHcCCcEEEEeccc-cchHHHHHHhccCCCcEEEEecc
Q 015614           88 LEALHLAEDLGADYVDFELKV-ASNILGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~~-~~~~~~~l~~~~~~~~kiI~S~H  131 (403)
                        +++.+++.|+++|-+=... .....+.+...++.+.++.++.+
T Consensus        72 --~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~ln  114 (231)
T 3ctl_A           72 --YIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILN  114 (231)
T ss_dssp             --THHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEEC
T ss_pred             --HHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEE
Confidence              3467788899999876555 33222222233456778888874

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=92.50  E-value=1.7  Score=42.31  Aligned_cols=158  Identities=17%  Similarity=0.244  Sum_probs=103.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      .|.++.+.|+....+.|||+|-+-+...+   ..+.+..+++..++|++.-+=       |  +    .++...+++.|+
T Consensus        43 ~D~~atv~Qi~~l~~aG~diVRvavp~~~---~a~al~~I~~~~~vPlvaDiH-------f--~----~~lal~a~e~G~  106 (366)
T 3noy_A           43 HDVEATLNQIKRLYEAGCEIVRVAVPHKE---DVEALEEIVKKSPMPVIADIH-------F--A----PSYAFLSMEKGV  106 (366)
T ss_dssp             TCHHHHHHHHHHHHHTTCCEEEEECCSHH---HHHHHHHHHHHCSSCEEEECC-------S--C----HHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCCCChH---HHHHHHHHHhcCCCCEEEeCC-------C--C----HHHHHHHHHhCC
Confidence            56788999999999999999998776422   246788888889999996532       1  1    134556888898


Q ss_pred             cEEEEecccc--chHHHHHH-hccCCCc--EEEEeccCCC---------CCCC--HhHHHHHHHHHHHcCCCEEEEEeec
Q 015614          100 DYVDFELKVA--SNILGKQY-SSHQSGT--RFIVSCNLDC---------ETPS--EEDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus       100 ~yvDiEl~~~--~~~~~~l~-~~~~~~~--kiI~S~H~f~---------~tp~--~~~l~~~~~~~~~~gadivKia~~~  163 (403)
                      |-+-|.-...  ++.++++. ..+..++  +|-+.+-..+         .||.  .+...+..+.+.++|.+=+++-..+
T Consensus       107 dklRINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~  186 (366)
T 3noy_A          107 HGIRINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKG  186 (366)
T ss_dssp             SEEEECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             CeEEECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeec
Confidence            8877754332  22333443 2222333  3333332221         2331  2456677888889998888899998


Q ss_pred             CCHhHHHHHHHHhc-cCCCCEEEEEcCccchh
Q 015614          164 NDITEIARIFQLLS-HCQVPIIAYSVGERGLV  194 (403)
Q Consensus       164 ~~~~D~~~ll~~~~-~~~~p~i~~~MG~~G~~  194 (403)
                      .+..+.....+.+. ..+.|+ .++.++.|..
T Consensus       187 S~v~~~i~ayr~la~~~dyPL-HlGvTEAG~~  217 (366)
T 3noy_A          187 SDVLQNVRANLIFAERTDVPL-HIGITEAGMG  217 (366)
T ss_dssp             SSHHHHHHHHHHHHHHCCCCE-EECCSSCCSH
T ss_pred             CChHHHHHHHHHHHhccCCCE-EEccCCCCCC
Confidence            88888877776654 458887 6777776644

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=92.47  E-value=2  Score=39.56  Aligned_cols=107  Identities=18%  Similarity=0.115  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCC------CCCCc------hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCIN------NFQPG------KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~------~~~~~------~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (403)
                      +++...++.++..|+++|-||---..      ..+..      +++..+-+..+.|+|+.-|               .+ 
T Consensus        43 ~~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~---------------~~-  106 (243)
T 3o63_A           43 GDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDR---------------AD-  106 (243)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC---------------HH-
T ss_pred             chHHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCH---------------HH-
Confidence            34666677778899999999975411      01121      2233333456889998633               11 


Q ss_pred             HHHHHHcCCcEEEEeccccc-hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614           91 LHLAEDLGADYVDFELKVAS-NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        91 l~~~~~~g~~yvDiEl~~~~-~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                        .+.+.|++.|=+.-+... ...+++   ...+..|-+|.|+      .+|    ..++.+.|+|++.+-
T Consensus       107 --lA~~~gAdGVHLg~~dl~~~~~r~~---~~~~~~iG~S~ht------~~E----a~~A~~~GaDyI~vg  162 (243)
T 3o63_A          107 --IARAAGADVLHLGQRDLPVNVARQI---LAPDTLIGRSTHD------PDQ----VAAAAAGDADYFCVG  162 (243)
T ss_dssp             --HHHHHTCSEEEECTTSSCHHHHHHH---SCTTCEEEEEECS------HHH----HHHHHHSSCSEEEEC
T ss_pred             --HHHHhCCCEEEecCCcCCHHHHHHh---hCCCCEEEEeCCC------HHH----HHHHhhCCCCEEEEc
Confidence              256679999887654432 222332   2355667779885      233    344556899999984

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=92.46  E-value=0.081  Score=49.71  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++|.++|.|+ ||.|++++..|++.|++|.++.|+.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTR   62 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            356899999985 8899999999999999999999974

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=92.46  E-value=0.17  Score=47.22  Aligned_cols=38  Identities=42%  Similarity=0.581  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   65 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD   65 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH
Confidence            3577999999995 8899999999999999999988763

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=92.45  E-value=0.13  Score=49.86  Aligned_cols=39  Identities=23%  Similarity=0.101  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~  180 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEI  180 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            346789999999999999999999999999999999865

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=92.44  E-value=0.048  Score=48.04  Aligned_cols=35  Identities=29%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             CCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++|.| +||.|++++..++..|++|+++.|+.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999 59999999999999999999888864

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.40  E-value=0.061  Score=50.91  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~   60 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   60 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            356899999984 8999999999999999999999974

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=92.38  E-value=0.14  Score=49.14  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=35.7

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~  176 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPN  176 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            357899999999999999999999999999999999864

>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7

Probab=92.34  E-value=1  Score=41.22  Aligned_cols=131  Identities=16%  Similarity=0.161  Sum_probs=74.1

Q ss_pred             HHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecC--CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           29 MYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPK--WAGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      ++.+.+.|.|.||++.+++.+.+..+.++.+.+..++++....-..  ...+..   .+...+.++.|.++|+.+|=+-.
T Consensus        29 l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~---~~~~~~~i~~A~~lGa~~v~~~~  105 (264)
T 1yx1_A           29 LPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQL---NPELEPTLRRAEACGAGWLKVSL  105 (264)
T ss_dssp             HHHHHHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTSSB---CTTHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHcCCCEEEEEHHhcCCCHHHHHHHHHHHHcCCEEEEecchhhcCCchhH---HHHHHHHHHHHHHcCCCEEEEec
Confidence            3444567999999998866542233456666667788766442110  111111   03445678889999999987754


Q ss_pred             ccc--chHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614          107 KVA--SNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus       107 ~~~--~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~  163 (403)
                      ...  ...++++. .+.+.++++.+-.|......+.+++..+++...+.+.. +++..=.
T Consensus       106 g~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~ll~~v~~~~~~-vg~~~D~  164 (264)
T 1yx1_A          106 GLLPEQPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLAERQQLD-LAMTFDI  164 (264)
T ss_dssp             ECCCSSCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHHHHHHHHHHHTTCS-EEEEEET
T ss_pred             CCCCcHHHHHHHHHHHHhcCCEEEEecCCCCCCCCHHHHHHHHHHHHhcCCC-eEEEEeh
Confidence            322  11334443 23345666666555321112345677777776665666 7777533

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=92.33  E-value=2.2  Score=38.02  Aligned_cols=104  Identities=18%  Similarity=0.170  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhcCCCEEEEEecCCCCCCC---chHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614           25 VLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (403)
Q Consensus        25 ~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (403)
                      ....++.+.+.|+|+|++|.-.......   .+.+..++   +..+.|+++.               +   .++.+.+.|
T Consensus        33 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~---------------~---~~~~a~~~g   94 (227)
T 2tps_A           33 PVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVN---------------D---DVELALNLK   94 (227)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEE---------------S---CHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEc---------------C---HHHHHHHcC
Confidence            5555666677899999999433322221   12222333   2346888873               0   123566789


Q ss_pred             CcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           99 ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        99 ~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +++|=+.-....  ..+++..... ..+-+|.|+      .+++    .++.+.|+|.+++
T Consensus        95 ad~v~l~~~~~~--~~~~~~~~g~-~~~~~s~~t------~~e~----~~a~~~g~d~v~~  142 (227)
T 2tps_A           95 ADGIHIGQEDAN--AKEVRAAIGD-MILGVSAHT------MSEV----KQAEEDGADYVGL  142 (227)
T ss_dssp             CSEEEECTTSSC--HHHHHHHHTT-SEEEEEECS------HHHH----HHHHHHTCSEEEE
T ss_pred             CCEEEECCCccC--HHHHHHhcCC-cEEEEecCC------HHHH----HHHHhCCCCEEEE
Confidence            999877543322  2233321122 344455553      2333    3455679999997

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.33  E-value=0.14  Score=47.55  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +++|+++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   66 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   66 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCh
Confidence            57899999985 8899999999999999999999974

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=92.32  E-value=0.1  Score=50.88  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEec
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI  399 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR  399 (403)
                      ++++|+|+|+||.|..++..|...|+ +|+|++.
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~   68 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDH   68 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence            46799999999999999999999999 9999954

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=92.31  E-value=3.9  Score=37.62  Aligned_cols=86  Identities=15%  Similarity=0.216  Sum_probs=52.1

Q ss_pred             CCeeEEEecc--cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC------------------CCc---hHHHHHHhcCCC
Q 015614            9 NTTMICAPLM--AQSVEQVLSNMYQAKAEGADVVEIRLDCINNF------------------QPG---KDLEIILTKKPL   65 (403)
Q Consensus         9 ~~~~icv~l~--~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------------~~~---~~l~~l~~~~~~   65 (403)
                      +++.+...++  .++.++....++.+.+.|+|+||+++-+-.+.                  +..   +.++.+|+..++
T Consensus        16 ~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~   95 (262)
T 1rd5_A           16 GKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSC   95 (262)
T ss_dssp             TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSS
T ss_pred             CCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence            4555555554  34458888888888888999999997664321                  111   345566667789


Q ss_pred             cEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           66 PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        66 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                      |+++-.+..          ..+...++.+.+.|++.|-+
T Consensus        96 Pv~~m~~~~----------~~~~~~~~~a~~aGadgv~v  124 (262)
T 1rd5_A           96 PVVLLSYYK----------PIMFRSLAKMKEAGVHGLIV  124 (262)
T ss_dssp             CEEEECCSH----------HHHSCCTHHHHHTTCCEEEC
T ss_pred             CEEEEecCc----------HHHHHHHHHHHHcCCCEEEE
Confidence            988753321          01111122367788886665

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.29  E-value=0.18  Score=47.17  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++++++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3467899999995 8899999999999999999999874

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.28  E-value=0.13  Score=51.41  Aligned_cols=37  Identities=27%  Similarity=0.268  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +.+.+++|+|+|.+|++++..+..+|++|++++|+++
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            3568999999999999999999999999999999875

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=92.27  E-value=0.18  Score=49.12  Aligned_cols=39  Identities=28%  Similarity=0.302  Sum_probs=35.8

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~  205 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTL  205 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence            457899999999999999999999999999999999865

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=92.23  E-value=0.45  Score=47.12  Aligned_cols=112  Identities=18%  Similarity=0.272  Sum_probs=66.1

Q ss_pred             cCCCceEeecCcccHHHHHHHhc--CCCCceEEecccchHHHHcccccCCHHHhhccceeEEEEeccCCeEEEEeccHHH
Q 015614          264 VNYNGIYVPMFVDDLKKFFSTYS--SPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEA  341 (403)
Q Consensus       264 ~gl~~~y~~~~~~~~~~~~~~~~--~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G  341 (403)
                      -|+|..=..+++.+.++|++.++  .+.|.|+|.--==....++.++++-+.      .|          +-=+|-|-.|
T Consensus       103 agid~~pi~Ldv~~~dEfv~~v~~~~p~F~~I~lED~~~p~~f~il~~~r~~------~~----------ipvf~DDiqG  166 (398)
T 2a9f_A          103 AGVDAIPIVLDTKDTEEIISIVKALAPTFGGINLEDISAPRCFEIEQRLIKE------CH----------IPVFHDDQHG  166 (398)
T ss_dssp             SSCEEEEEECCCCCHHHHHHHHHHHGGGCSEEEECSCCTTHHHHHHHHHHHH------CS----------SCEEEHHHHH
T ss_pred             cCCceeeeEeCCCCHHHHHHHHHHcCCceeEeccccCCChHHHHHHHHhhhc------CC----------cceecchhhh
Confidence            36774434456667788766663  378899876421122233333322211      11          1224445444


Q ss_pred             H----HHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          342 S----ITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       342 ~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      -    ..++-..+.   .      .+..++..+++|+|||-+|-+++.-|..+|+ +|++++|+
T Consensus       167 Ta~V~lAall~al~---l------~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          167 TAIVVLAAIFNSLK---L------LKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             HHHHHHHHHHHHHH---T------TTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHHH---H------hCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            2    122222222   0      1245667899999999999999999999999 99999986

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=92.19  E-value=0.17  Score=46.83  Aligned_cols=38  Identities=26%  Similarity=0.559  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.+|+++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   65 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   65 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCH
Confidence            3467899999985 8889999999999999999999874

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=92.17  E-value=0.11  Score=50.33  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+.++++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~  180 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK  180 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            56789999999999999999999999999999999864

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=92.08  E-value=0.37  Score=45.82  Aligned_cols=86  Identities=16%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCC-EEEEEecCCC-----CC--CC---chHHHHHHhcCCCcEEEEeecCCCCCCCC
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGAD-VVEIRLDCIN-----NF--QP---GKDLEIILTKKPLPVLIVYRPKWAGGLYE   81 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D-~vElRlD~l~-----~~--~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~   81 (403)
                      +.+.|.+.+.++...-++.+.+.|+| +||+-+-+=.     .+  ++   .+.++.+++..++|+++-++..       
T Consensus        96 ~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~-------  168 (311)
T 1jub_A           96 IFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPY-------  168 (311)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC-------
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCC-------
Confidence            46788899999999888888888999 9999653100     00  11   1344555556689999888743       


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEe
Q 015614           82 GDEHKRLEALHLAEDLGADYVDFE  105 (403)
Q Consensus        82 ~~~~~~~~ll~~~~~~g~~yvDiE  105 (403)
                      .+.++..++.+.+.+.|+++|.+-
T Consensus       169 ~~~~~~~~~a~~~~~~G~d~i~v~  192 (311)
T 1jub_A          169 FDLVHFDIMAEILNQFPLTYVNSV  192 (311)
T ss_dssp             CSHHHHHHHHHHHTTSCCCEEEEC
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEec
Confidence            255667777888889999998874

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=92.08  E-value=0.19  Score=48.96  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHH-HCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~-~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|. ..|++|++++|+.+
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~  198 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA  198 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCC
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCc
Confidence            4577999999999999999999999 99999999999864

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=92.07  E-value=2.6  Score=38.24  Aligned_cols=126  Identities=8%  Similarity=-0.035  Sum_probs=69.8

Q ss_pred             eeEEEec---ccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc---hHHHHHHhcCCCcEEEEeecCCCCCCCCCCH
Q 015614           11 TMICAPL---MAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDE   84 (403)
Q Consensus        11 ~~icv~l---~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~   84 (403)
                      -+++++.   ...++++.++.+   .+.|.|.||++.+.+......   +.++.+.+..++.+....-..      ..+.
T Consensus        18 ~klg~~~~~~~~~~~~~~l~~~---~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~------~~~~   88 (257)
T 3lmz_A           18 FHLGMAGYTFVNFDLDTTLKTL---ERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIY------MKSE   88 (257)
T ss_dssp             SEEEECGGGGTTSCHHHHHHHH---HHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEE------ECSH
T ss_pred             eEEEEEEEeecCCCHHHHHHHH---HHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEeccc------cCCH
Confidence            4466633   334566666544   567999999998865311112   244444456677655332111      1345


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCC--CCHhHHHHHHH
Q 015614           85 HKRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCET--PSEEDLGYLVS  147 (403)
Q Consensus        85 ~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~t--p~~~~l~~~~~  147 (403)
                      +...+.++.|.++|+.+|=+.-.  .+.++++. .+.+.++++.+-.|+++.+  .+.+++.++++
T Consensus        89 ~~~~~~i~~A~~lGa~~v~~~p~--~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~ll~  152 (257)
T 3lmz_A           89 EEIDRAFDYAKRVGVKLIVGVPN--YELLPYVDKKVKEYDFHYAIHLHGPDIKTYPDATDVWVHTK  152 (257)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEEC--GGGHHHHHHHHHHHTCEEEEECCCTTCSSSCSHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEecCC--HHHHHHHHHHHHHcCCEEEEecCCCcccccCCHHHHHHHHH
Confidence            66677888999999999887532  23333443 2233466666666643222  23344444443

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=92.05  E-value=0.066  Score=50.04  Aligned_cols=37  Identities=24%  Similarity=0.411  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+.+|.++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRL   62 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            356789999985 8899999999999999999999974

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=91.98  E-value=0.17  Score=48.24  Aligned_cols=38  Identities=34%  Similarity=0.461  Sum_probs=35.2

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+.|+++.|+|.|..|++++..|...|++|+.++|+.+
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~  156 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSV  156 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCC
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCcEEEEEecccc
Confidence            46789999999999999999999999999999999864

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=91.91  E-value=4.8  Score=37.69  Aligned_cols=85  Identities=16%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHHhc-CCCcEEEEe
Q 015614           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTK-KPLPVLIVY   71 (403)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~~~-~~~PiI~T~   71 (403)
                      .++.-.|+++.....++...+.|+|+|||-+-+-.+.-+                     .+.++.+|+. .++|+++-.
T Consensus        25 yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~  104 (271)
T 3nav_A           25 FVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLM  104 (271)
T ss_dssp             EEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            345567889999888888778899999999887543311                     1345566665 689987653


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           72 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        72 R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                      ..+.   .+...   .-++++.+.+.|++.+=+
T Consensus       105 Y~n~---v~~~g---~~~f~~~~~~aGvdGvIi  131 (271)
T 3nav_A          105 YANL---VYARG---IDDFYQRCQKAGVDSVLI  131 (271)
T ss_dssp             CHHH---HHHTC---HHHHHHHHHHHTCCEEEE
T ss_pred             cCcH---HHHHh---HHHHHHHHHHCCCCEEEE
Confidence            3110   00001   145678888899887554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=91.88  E-value=0.14  Score=47.60  Aligned_cols=38  Identities=32%  Similarity=0.424  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++|.+||-|+ ||.|++++..|++.|++|+++.|+.
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTE   62 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3467899999985 8999999999999999999999874

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=91.84  E-value=0.11  Score=53.26  Aligned_cols=38  Identities=32%  Similarity=0.502  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ...|++++|+|.|+.|+.++..|+..|++|++++|+++
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~  308 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPI  308 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45789999999999999999999999999999998753

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=91.84  E-value=0.2  Score=47.32  Aligned_cols=37  Identities=27%  Similarity=0.534  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+++|.++|.|+ ||.|++++..|++.|++|++++|+
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   61 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVC   61 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3577999999995 889999999999999999999886

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=91.81  E-value=2.7  Score=39.06  Aligned_cols=127  Identities=22%  Similarity=0.156  Sum_probs=76.0

Q ss_pred             HHHHHHHhcCCCEEEEEecCCCCCCCch---HHHHHHh---cCCCcEEEEeecCCCCCCCC--CCHHHHHHHHHHHHHcC
Q 015614           27 SNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIILT---KKPLPVLIVYRPKWAGGLYE--GDEHKRLEALHLAEDLG   98 (403)
Q Consensus        27 ~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~~---~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~~~g   98 (403)
                      .+++++++.|+|.|-+|+.+= ..+..+   .+..+++   ...+|+|+..+.  .|....  .++++-.+..+.+.+.|
T Consensus        96 ~~ve~Ai~~Ga~~v~~~~nig-~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~--~G~~~~~~~s~~~i~~a~~~a~~~G  172 (263)
T 1w8s_A           96 CSVEEAVSLGASAVGYTIYPG-SGFEWKMFEELARIKRDAVKFDLPLVVESFP--RGGKVVNETAPEIVAYAARIALELG  172 (263)
T ss_dssp             SCHHHHHHTTCSEEEEEECTT-STTHHHHHHHHHHHHHHHHHHTCCEEEEECC--CSTTCCCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCEEEEEEecC-CcCHHHHHHHHHHHHHHHHHcCCeEEEEeeC--CCCccccCCCHHHHHHHHHHHHHcC
Confidence            345666788999999998433 222222   2233332   348999988654  344332  25555555567888999


Q ss_pred             CcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           99 ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        99 ~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +|||=+......+.++.+...- +.+.|++|==-  ..-+.++..+.+....+.||+-+=+
T Consensus       173 AD~vkt~~~~~~e~~~~~~~~~-~~~pV~asGGi--~~~~~~~~l~~i~~~~~aGA~Gvsv  230 (263)
T 1w8s_A          173 ADAMKIKYTGDPKTFSWAVKVA-GKVPVLMSGGP--KTKTEEDFLKQVEGVLEAGALGIAV  230 (263)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHT-TTSCEEEECCS--CCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEcCCCCHHHHHHHHHhC-CCCeEEEEeCC--CCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            9999998532234455555332 22245555211  1114678888888888899984433

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=91.79  E-value=0.16  Score=48.95  Aligned_cols=36  Identities=39%  Similarity=0.464  Sum_probs=32.4

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++++|.|+ ||.+++++..++..|++|+++.|+.+
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~  205 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG  205 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH
Confidence            4789999998 89999999999999999999998765

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=91.79  E-value=0.13  Score=47.66  Aligned_cols=37  Identities=27%  Similarity=0.343  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS   62 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4567899999995 899999999999999999999985

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=91.79  E-value=0.21  Score=48.06  Aligned_cols=39  Identities=15%  Similarity=0.060  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|+.++|+.+
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            346789999999999999999999999999999999864

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=91.73  E-value=0.17  Score=49.01  Aligned_cols=39  Identities=23%  Similarity=0.212  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~  179 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM  179 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            456789999999999999999999999999999999864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=91.63  E-value=0.2  Score=48.25  Aligned_cols=37  Identities=30%  Similarity=0.321  Sum_probs=33.1

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      .|++++|+|+|+.+.+++..++..|++|+++.++.+|
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~  212 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHK  212 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            5789999999999999999889999999998888764

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=91.63  E-value=0.21  Score=48.78  Aligned_cols=38  Identities=29%  Similarity=0.495  Sum_probs=34.9

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+.|+++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~  202 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS  202 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            56799999999999999999999999999999999754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=91.59  E-value=0.35  Score=48.55  Aligned_cols=38  Identities=32%  Similarity=0.504  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|++++|+|.|-.|++++..|..+|++|++++|++
T Consensus       207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            45789999999999999999999999999999999874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=91.58  E-value=0.12  Score=50.26  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +|++++|+|+||.+.+++..++..|++|++++|+.
T Consensus       180 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~  214 (366)
T 2cdc_A          180 NCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE  214 (366)
T ss_dssp             TTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            38999999999999999999998999999999876

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=91.58  E-value=0.13  Score=49.74  Aligned_cols=39  Identities=21%  Similarity=0.328  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~  180 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN  180 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            346789999999999999999999999999999999864

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=91.54  E-value=0.19  Score=49.11  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+|+|+|+|-+|.+++.+|++.|.+|+|+.|..
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999864

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=91.52  E-value=0.17  Score=47.11  Aligned_cols=38  Identities=26%  Similarity=0.543  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++|+++|.| +||.|++++..|.+.|++|+++.|+.
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   63 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   63 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            346789999998 58899999999999999999998874

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=91.50  E-value=0.22  Score=46.60  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+.+|+++|-|+ ||.|++++..|.+.|++|++++|+
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~   58 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFG   58 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467899999985 899999999999999999999984

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=91.46  E-value=2.4  Score=37.71  Aligned_cols=106  Identities=16%  Similarity=0.125  Sum_probs=68.1

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEe-cCC-CCC-CC-chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DCI-NNF-QP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~l-~~~-~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      +|+-+|..-|..++...++.+.+.|+|.+++|+ |-- ... +. .+.++.+++.++.|+.+.+--.        +.+.+
T Consensus         5 ~~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~--------d~~~~   76 (220)
T 2fli_A            5 KIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVV--------DPERY   76 (220)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESS--------SGGGG
T ss_pred             EEEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeec--------CHHHH
Confidence            588888898988888888888888999999994 633 111 11 3567778776677887765422        11222


Q ss_pred             HHHHHHHHHcCCcEEEEeccccc---hHHHHHHhccCCCcEEEEecc
Q 015614           88 LEALHLAEDLGADYVDFELKVAS---NILGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~~~~---~~~~~l~~~~~~~~kiI~S~H  131 (403)
                         ++.+.+.|+++|-+-....+   ...+.+.   +.+.+++++.+
T Consensus        77 ---i~~~~~~gad~v~vh~~~~~~~~~~~~~~~---~~g~~i~~~~~  117 (220)
T 2fli_A           77 ---VEAFAQAGADIMTIHTESTRHIHGALQKIK---AAGMKAGVVIN  117 (220)
T ss_dssp             ---HHHHHHHTCSEEEEEGGGCSCHHHHHHHHH---HTTSEEEEEEC
T ss_pred             ---HHHHHHcCCCEEEEccCccccHHHHHHHHH---HcCCcEEEEEc
Confidence               36777889999977433222   2223332   23577888874

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=91.41  E-value=0.19  Score=48.46  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEec-CCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI-DFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR-~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|++++| +.+
T Consensus       142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  181 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS  181 (320)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcC
Confidence            357899999999999999999999999999999999 754

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=91.39  E-value=0.48  Score=47.40  Aligned_cols=53  Identities=32%  Similarity=0.435  Sum_probs=43.3

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEec
Q 015614          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI  399 (403)
Q Consensus       338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR  399 (403)
                      -+.|.+..++..+.+.+         ..+++++++|-|.|.+|+.++..|.++|++|. |.++
T Consensus       197 Tg~Gv~~~~~~~~~~~g---------~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          197 AGLGALLVLEALAKRRG---------LDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             HHHHHHHHHHHHHHHHT---------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             hHHHHHHHHHHHHHhcC---------CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            35688888877776433         46789999999999999999999999999765 7776

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=91.38  E-value=0.48  Score=42.47  Aligned_cols=122  Identities=11%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             HHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015614           27 SNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVD  103 (403)
Q Consensus        27 ~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvD  103 (403)
                      ..++.+++.|+|+|++|...   .+..+..+.++   +....++|+.-+                  .+.+.+.|++.|=
T Consensus        17 ~~~~~a~~~Gv~~v~lr~k~---~~~~~~~~~i~~l~~~~~~~livnd~------------------~~~A~~~gadgvh   75 (210)
T 3ceu_A           17 KIITALFEEGLDILHLRKPE---TPAMYSERLLTLIPEKYHRRIVTHEH------------------FYLKEEFNLMGIH   75 (210)
T ss_dssp             HHHHHHHHTTCCEEEECCSS---CCHHHHHHHHHHSCGGGGGGEEESSC------------------TTHHHHTTCSEEE
T ss_pred             HHHHHHHHCCCCEEEEccCC---CCHHHHHHHHHHHHHHhCCeEEEeCC------------------HHHHHHcCCCEEE
Confidence            55677788999999999432   22222222232   334677776311                  1456678899985


Q ss_pred             EeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE--EeecCCHh------HHHHHHHH
Q 015614          104 FELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL--VFSVNDIT------EIARIFQL  175 (403)
Q Consensus       104 iEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi--a~~~~~~~------D~~~ll~~  175 (403)
                      +.-+..+.       ....+..+..|.|+      .+|+    .++. .|+|++++  ++...+..      +...+-.+
T Consensus        76 l~~~~~~~-------~~~~~~~ig~s~~t------~~e~----~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~  137 (210)
T 3ceu_A           76 LNARNPSE-------PHDYAGHVSCSCHS------VEEV----KNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREA  137 (210)
T ss_dssp             CCSSSCSC-------CTTCCSEEEEEECS------HHHH----HTTG-GGSSEEEECCCC---------CCCCHHHHHHH
T ss_pred             ECcccccc-------ccccCCEEEEecCC------HHHH----HHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHH
Confidence            53222110       01135567888885      2333    3344 79999997  33233322      22222222


Q ss_pred             hcc--CCCCEEEEE
Q 015614          176 LSH--CQVPIIAYS  187 (403)
Q Consensus       176 ~~~--~~~p~i~~~  187 (403)
                      ...  .+.|+++++
T Consensus       138 ~~~~~~~iPviaiG  151 (210)
T 3ceu_A          138 QKAKIIDSKVMALG  151 (210)
T ss_dssp             HHTTCSSTTEEEES
T ss_pred             HHhcCCCCCEEEEC
Confidence            333  478887764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.33  E-value=0.21  Score=46.97  Aligned_cols=36  Identities=33%  Similarity=0.443  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++|++||.|+ ||.|++++..|.+.|++|.++.|+
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999995 889999999999999999998875

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=91.26  E-value=0.26  Score=47.11  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=34.9

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+.++++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~  158 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK  158 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            47789999999999999999999999999999999753

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=91.25  E-value=0.29  Score=47.29  Aligned_cols=39  Identities=26%  Similarity=0.387  Sum_probs=35.6

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|+.++|+.+
T Consensus       136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~  174 (324)
T 3hg7_A          136 QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGR  174 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChH
Confidence            457799999999999999999999999999999999853

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=91.13  E-value=0.28  Score=45.62  Aligned_cols=37  Identities=30%  Similarity=0.423  Sum_probs=31.9

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.++.|+
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   64 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN   64 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467899999995 889999999999999998887654

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=91.03  E-value=0.26  Score=49.55  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=30.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .++++|||+|-+|.++++.|.+.|.+|+|+.+.
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~   65 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS   65 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            578999999999999999999999999999765

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=91.02  E-value=0.16  Score=51.21  Aligned_cols=35  Identities=31%  Similarity=0.325  Sum_probs=32.0

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++|+|+|.++.++++.|.+.|.+|+|+.+..
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~  155 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYD  155 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            46789999999999999999999999999998853

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=91.00  E-value=0.2  Score=48.82  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=32.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|+|+||.+.+++..++..|++|+++.|+.+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~  222 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPS  222 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999999999999999999999988888754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=90.94  E-value=0.14  Score=48.96  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=31.7

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++|.|+ ||.+++++..++..|++|+++.|+.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~  180 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD  180 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999997 9999999999999999999988864

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=90.92  E-value=2  Score=39.98  Aligned_cols=151  Identities=15%  Similarity=0.130  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCC-CCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKW-AGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~-eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      +.+++...++++.+.|++.|=+-..         .+.... ..+.++|+.+=+.- -.|.. .++ ....-.+.+++.|+
T Consensus        39 ~~~di~~~~~~a~~~~~~av~v~~~---------~v~~~~-~~~~~liv~~~~~~~~~g~~-~~~-~~~~~ve~Ai~~Ga  106 (263)
T 1w8s_A           39 DSADPEYILRLARDAGFDGVVFQRG---------IAEKYY-DGSVPLILKLNGKTTLYNGE-PVS-VANCSVEEAVSLGA  106 (263)
T ss_dssp             GGGCHHHHHHHHHHHTCSEEEECHH---------HHHHHC-CSSSCEEEECEECCTTCCSS-CCC-EESSCHHHHHHTTC
T ss_pred             chhhHHHHHHHHHhhCCCEEEECHH---------HHHHhh-cCCCcEEEEEeCCCCcCCCC-ccc-hHHHHHHHHHHCCC
Confidence            5666777777888889999876321         333333 34678887665331 11221 122 33344678899999


Q ss_pred             cEEEEeccccc----hH---HHHHH-hccCCCcEEEEeccCC----CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015614          100 DYVDFELKVAS----NI---LGKQY-SSHQSGTRFIVSCNLD----CETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT  167 (403)
Q Consensus       100 ~yvDiEl~~~~----~~---~~~l~-~~~~~~~kiI~S~H~f----~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~  167 (403)
                      +.||+=.+...    ..   ..++. ..++.+.++|+-.|.-    ..-.+.+++.+..+.+.+.|||++|.-+ +.+.+
T Consensus       107 ~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~-~~~~e  185 (263)
T 1w8s_A          107 SAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKY-TGDPK  185 (263)
T ss_dssp             SEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEEC-CSSHH
T ss_pred             CEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcC-CCCHH
Confidence            99998553221    11   22333 1233467777764421    0001345666667788889999999995 44566


Q ss_pred             HHHHHHHHhccCCC-CEEEEE
Q 015614          168 EIARIFQLLSHCQV-PIIAYS  187 (403)
Q Consensus       168 D~~~ll~~~~~~~~-p~i~~~  187 (403)
                      ++..+.+..   .. |+++.+
T Consensus       186 ~~~~~~~~~---~~~pV~asG  203 (263)
T 1w8s_A          186 TFSWAVKVA---GKVPVLMSG  203 (263)
T ss_dssp             HHHHHHHHT---TTSCEEEEC
T ss_pred             HHHHHHHhC---CCCeEEEEe
Confidence            655554432   34 766654

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=90.88  E-value=2.6  Score=38.41  Aligned_cols=112  Identities=11%  Similarity=0.075  Sum_probs=73.2

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecC--C-CCCCC-chHHHHHHhc--CCCcEEEEeecCCCCCCCCC
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC--I-NNFQP-GKDLEIILTK--KPLPVLIVYRPKWAGGLYEG   82 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~--l-~~~~~-~~~l~~l~~~--~~~PiI~T~R~~~eGG~~~~   82 (403)
                      ++++|+-||..-|...+..+++...+.|+|.+.+.+=-  | ++... .+.++.+|+.  .++|+-+.+-..        
T Consensus         3 ~~~~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~--------   74 (228)
T 3ovp_A            3 SGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVS--------   74 (228)
T ss_dssp             -CCEEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECS--------
T ss_pred             CCcEeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeC--------
Confidence            56889999999999888888888878899999885521  1 22221 2567888877  588988877642        


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEecc
Q 015614           83 DEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN  131 (403)
Q Consensus        83 ~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H  131 (403)
                      +.+.   +++.+++.|+++|-+=........+.+...++.+.++.++.+
T Consensus        75 ~p~~---~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~  120 (228)
T 3ovp_A           75 KPEQ---WVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK  120 (228)
T ss_dssp             CGGG---GHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEEC
T ss_pred             CHHH---HHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEc
Confidence            2233   345677889999888654433322222223345667777765

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=90.88  E-value=0.22  Score=48.24  Aligned_cols=38  Identities=21%  Similarity=0.235  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|+.++|+.
T Consensus       141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~  178 (330)
T 4e5n_A          141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKA  178 (330)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSC
T ss_pred             CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45689999999999999999999999999999999986

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=90.86  E-value=0.28  Score=46.19  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEcc-hh--HHHHHHHHHHHCCCeEEEEecC
Q 015614          365 PLAGRMFVLAGA-GG--AGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGa-GG--aarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++|+++|.|+ ||  .+++++..|.+.|++|.++.|+
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~   66 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQG   66 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECS
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCC
Confidence            467899999997 34  9999999999999999999887

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=90.80  E-value=0.17  Score=47.69  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|+|+ ||.+++++..++..|++|+.+.|+.+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~  161 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE  161 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999998 99999999999999999999888754

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=90.79  E-value=3.6  Score=37.39  Aligned_cols=158  Identities=8%  Similarity=-0.006  Sum_probs=92.9

Q ss_pred             CCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHH
Q 015614            6 ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEH   85 (403)
Q Consensus         6 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~   85 (403)
                      |+. ++.+|+.+-.++.++.+..++.. ...+|++++-+.++....+ +.++.|++..+.++++=+..-      +. .+
T Consensus         9 m~~-~~~lilAlD~~~~~~a~~~v~~~-~~~v~~~Kvg~~lf~~~G~-~~v~~l~~~~g~~v~lD~Kl~------Di-pn   78 (228)
T 3m47_A            9 MDV-MNRLILAMDLMNRDDALRVTGEV-REYIDTVKIGYPLVLSEGM-DIIAEFRKRFGCRIIADFKVA------DI-PE   78 (228)
T ss_dssp             CCC-GGGEEEECCCCSHHHHHHHHHTT-TTTCSEEEEEHHHHHHHCT-HHHHHHHHHHCCEEEEEEEEC------SC-HH
T ss_pred             hhc-CCCeEEEeCCCCHHHHHHHHHHc-CCcccEEEEcHHHHHhcCH-HHHHHHHhcCCCeEEEEEeec------cc-Hh
Confidence            444 67899999999999999888764 3338999998887754333 356677653467888777653      12 11


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEE--eccCCCCCCC-HhHHHHHHHHHHHcCCCEEEEEe
Q 015614           86 KRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIV--SCNLDCETPS-EEDLGYLVSRMQATGADIIKLVF  161 (403)
Q Consensus        86 ~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~--S~H~f~~tp~-~~~l~~~~~~~~~~gadivKia~  161 (403)
                      --....+.++++|+|+|-+-.....+.++..+ ..+..+.++++  |.-+...... .+......+.+.+.|.|-  +++
T Consensus        79 Tv~~~~~~~~~~gad~vtvh~~~G~~~l~~~~~~~~~~g~~v~vLt~~s~~~~~~~~~~~~~~~a~~a~~~G~~G--vV~  156 (228)
T 3m47_A           79 TNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKN--YVG  156 (228)
T ss_dssp             HHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECCCCSGGGGTTHHHHHHHHHHHHHHTTCCE--EEC
T ss_pred             HHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHHHHHHHHHHHHHHHhCCcE--EEE
Confidence            11234456778999999997665554443333 12222335543  3221100000 122344555666788775  456


Q ss_pred             ecCCHhHHHHHHHH
Q 015614          162 SVNDITEIARIFQL  175 (403)
Q Consensus       162 ~~~~~~D~~~ll~~  175 (403)
                      .+..++++..+-+.
T Consensus       157 ~at~~~e~~~ir~~  170 (228)
T 3m47_A          157 PSTRPERLSRLREI  170 (228)
T ss_dssp             CSSCHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHh
Confidence            66556666555443

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=90.67  E-value=0.23  Score=46.17  Aligned_cols=37  Identities=35%  Similarity=0.579  Sum_probs=32.1

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .++++|+++|.|+ ||.|++++..|.+.|++|.+..|+
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~   61 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYAS   61 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3567899999985 899999999999999998888773

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=90.65  E-value=0.24  Score=48.00  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=32.7

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      .|++++|+|+|+.+.+++..++.+|++|+.+.|+.+|
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~  215 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK  215 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            4789999999999999998888899999999887664

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=90.64  E-value=0.27  Score=47.27  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHC-CC-eEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~-g~-~i~v~nR~  400 (403)
                      ..++++|+|+|+.|++.+.+|.+. +. +|+|+||+
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~  155 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY  155 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc
Confidence            358999999999999999999874 66 89999998

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=90.56  E-value=7.4  Score=36.27  Aligned_cols=90  Identities=14%  Similarity=0.078  Sum_probs=56.0

Q ss_pred             CCeeEEEec--ccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHHhc-CC
Q 015614            9 NTTMICAPL--MAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTK-KP   64 (403)
Q Consensus         9 ~~~~icv~l--~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~~~-~~   64 (403)
                      +++.+...|  -.|+++.....++...+.|+|+||+-+-+-.+.-+                     .+.++.+|+. .+
T Consensus        16 ~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~   95 (267)
T 3vnd_A           16 DKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPD   95 (267)
T ss_dssp             TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence            444444444  45677888888888878999999998877544322                     1345566665 78


Q ss_pred             CcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           65 LPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        65 ~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                      +|+++-....      +.-.--.-++++.+.+.|++.+=+
T Consensus        96 ~Pivlm~Y~n------pv~~~g~e~f~~~~~~aGvdgvii  129 (267)
T 3vnd_A           96 MPIGLLLYAN------LVFANGIDEFYTKAQAAGVDSVLI  129 (267)
T ss_dssp             CCEEEEECHH------HHHHHCHHHHHHHHHHHTCCEEEE
T ss_pred             CCEEEEecCc------HHHHhhHHHHHHHHHHcCCCEEEe
Confidence            9987653311      000000135677888888887554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=90.54  E-value=0.25  Score=47.98  Aligned_cols=39  Identities=26%  Similarity=0.411  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|-|..|++++..|+..|++|+.++|+.+
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~  199 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIIS  199 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSC
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            457899999999999999999999999999999999754

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=90.49  E-value=0.22  Score=47.54  Aligned_cols=36  Identities=47%  Similarity=0.781  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            467899999985 899999999999999999999886

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=90.49  E-value=1.3  Score=40.00  Aligned_cols=125  Identities=17%  Similarity=0.155  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCC-CC---chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           24 QVLSNMYQAKAEGADVVEIRLDCINNF-QP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        24 e~~~~~~~~~~~~~D~vElRlD~l~~~-~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      +....++.+.+.|+|.++++ |.-... ..   .+.++.+++..++|+++.      ||..  +.+.    .+.+++.|+
T Consensus        34 ~~~~~a~~~~~~G~d~i~v~-~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~------g~i~--~~~~----~~~~~~~Ga  100 (253)
T 1h5y_A           34 DPVEMAVRYEEEGADEIAIL-DITAAPEGRATFIDSVKRVAEAVSIPVLVG------GGVR--SLED----ATTLFRAGA  100 (253)
T ss_dssp             CHHHHHHHHHHTTCSCEEEE-ECCCCTTTHHHHHHHHHHHHHHCSSCEEEE------SSCC--SHHH----HHHHHHHTC
T ss_pred             cHHHHHHHHHHcCCCEEEEE-eCCccccCCcccHHHHHHHHHhcCCCEEEE------CCCC--CHHH----HHHHHHcCC
Confidence            34444555566799999997 332211 11   235566777789999975      3322  2222    245666799


Q ss_pred             cEEEEecccc--chHHHHHHhccC-CCcEEEEeccC-----CCCCC-----CHhHHHHHHHHHHHcCCCEEEEEe
Q 015614          100 DYVDFELKVA--SNILGKQYSSHQ-SGTRFIVSCNL-----DCETP-----SEEDLGYLVSRMQATGADIIKLVF  161 (403)
Q Consensus       100 ~yvDiEl~~~--~~~~~~l~~~~~-~~~kiI~S~H~-----f~~tp-----~~~~l~~~~~~~~~~gadivKia~  161 (403)
                      +.|.+--...  .+...++..... ....+-++.+.     .-.+.     +..+..+..+++.+.|+|.+.+-.
T Consensus       101 d~V~i~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~  175 (253)
T 1h5y_A          101 DKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTS  175 (253)
T ss_dssp             SEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEE
T ss_pred             CEEEEChHHhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEec
Confidence            9999764332  233333332111 11233333331     00000     112355667778888999998754

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=90.47  E-value=0.24  Score=47.17  Aligned_cols=36  Identities=33%  Similarity=0.546  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++|++||-|+ ||.|++++..|++.|++|++++|+
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~   79 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC   79 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            367899999985 899999999999999999998775

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=90.47  E-value=0.15  Score=49.14  Aligned_cols=36  Identities=33%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++++|+|+||.+.+++..++..|++|+++.|+.+
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~  199 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE  199 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999999999999999999999999887643

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=90.43  E-value=0.34  Score=45.24  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEec
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR  399 (403)
                      .+++|.++|.|+ ||.|++++..|.+.|++|.++.|
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~   61 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGI   61 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            467899999985 88999999999999999998886

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=90.41  E-value=2.5  Score=39.27  Aligned_cols=127  Identities=13%  Similarity=0.161  Sum_probs=69.1

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHH
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEH   85 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~   85 (403)
                      .+|+|..+-.+++.++....+.+   .|+|+||+-+-.......  .+..+.   +..+.|++...     -|.+  +.+
T Consensus        12 ~~~~~~~t~g~p~~~~~~~~l~~---~Gad~ielg~pr~~~~g~--~~~~~~~~l~~~~~~~~pn~-----~~~~--~~~   79 (264)
T 1xm3_A           12 QSRLLLGTGKYPSFDIQKEAVAV---SESDILTFAVRRMNIFEA--SQPNFLEQLDLSKYTLLPNT-----AGAS--TAE   79 (264)
T ss_dssp             SCCEEEECSCSSCHHHHHHHHHH---HTCSEEEEETTSSTTC---------CTTCCGGGSEEEEEC-----TTCS--SHH
T ss_pred             cCCCEEEecCCCCHHHHHHHHHH---cCCeEEEEcccccccCCC--CHHHHHHHHHhcCCeEcCCc-----cccC--CHH
Confidence            46888889999999999865544   599999997643321011  122222   22345555322     2332  445


Q ss_pred             HHHHHHHHHHHcC-CcEEEEecccc-----c---hHHHHHHhccCCCcEEE-EeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015614           86 KRLEALHLAEDLG-ADYVDFELKVA-----S---NILGKQYSSHQSGTRFI-VSCNLDCETPSEEDLGYLVSRMQATGAD  155 (403)
Q Consensus        86 ~~~~ll~~~~~~g-~~yvDiEl~~~-----~---~~~~~l~~~~~~~~kiI-~S~H~f~~tp~~~~l~~~~~~~~~~gad  155 (403)
                      +...+.+.+.+.| .++|-+|+--.     +   +..+........+..+| .+.|+      .+    ..+++.+.|+|
T Consensus        80 ~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~------~~----~a~~~~~~gad  149 (264)
T 1xm3_A           80 EAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDD------VV----LARKLEELGVH  149 (264)
T ss_dssp             HHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSC------HH----HHHHHHHHTCS
T ss_pred             HHHHHHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCC------HH----HHHHHHHhCCC
Confidence            5556667776664 77776664321     1   12222221112356666 66553      22    34556677999


Q ss_pred             EE
Q 015614          156 II  157 (403)
Q Consensus       156 iv  157 (403)
                      ++
T Consensus       150 ~v  151 (264)
T 1xm3_A          150 AI  151 (264)
T ss_dssp             CB
T ss_pred             EE
Confidence            88

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=90.39  E-value=7.5  Score=36.68  Aligned_cols=147  Identities=12%  Similarity=0.152  Sum_probs=86.1

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEe-------cCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRL-------DCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRl-------D~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (403)
                      +.++.+.-++.+.+.|+|.||.=-       ..+.  +..+.+..+.+..+.|+...++          +    .+-++.
T Consensus        28 ~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~l~~----------~----~~~i~~   91 (302)
T 2ftp_A           28 EVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMA--GSAEVFAGIRQRPGVTYAALAP----------N----LKGFEA   91 (302)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGT--THHHHHHHSCCCTTSEEEEECC----------S----HHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcCEEEECCCcCcccccccc--CHHHHHHHhhhcCCCEEEEEeC----------C----HHHHHH
Confidence            446666666666778999999864       1111  1112222333333556554432          1    245778


Q ss_pred             HHHcCCcEEEEeccccc---------------hHHHHHH-hccCCCcEEEEe------ccCCCCCCCHhHHHHHHHHHHH
Q 015614           94 AEDLGADYVDFELKVAS---------------NILGKQY-SSHQSGTRFIVS------CNLDCETPSEEDLGYLVSRMQA  151 (403)
Q Consensus        94 ~~~~g~~yvDiEl~~~~---------------~~~~~l~-~~~~~~~kiI~S------~H~f~~tp~~~~l~~~~~~~~~  151 (403)
                      +++.|++.|.+-....+               +..++.. ..+..+.++-+.      ..+...+ +.+++.+.++++.+
T Consensus        92 a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~-~~~~~~~~~~~~~~  170 (302)
T 2ftp_A           92 ALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDV-DPRQVAWVARELQQ  170 (302)
T ss_dssp             HHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCC-CHHHHHHHHHHHHH
T ss_pred             HHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCC-CHHHHHHHHHHHHH
Confidence            88999999988433322               1112222 334456666322      1211112 45789999999999


Q ss_pred             cCCCEEEEEeec--CCHhHHHHHHHHhccC--CCCEE
Q 015614          152 TGADIIKLVFSV--NDITEIARIFQLLSHC--QVPII  184 (403)
Q Consensus       152 ~gadivKia~~~--~~~~D~~~ll~~~~~~--~~p~i  184 (403)
                      .|+|.+-++-+.  .++.+..++++.+.+.  +.|+.
T Consensus       171 ~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~  207 (302)
T 2ftp_A          171 MGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLA  207 (302)
T ss_dssp             TTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEE
T ss_pred             cCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEE
Confidence            999999998544  3688888888876543  35654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.31  E-value=0.29  Score=51.75  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=30.8

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ...|+|||+|.+|.++++.|++.|.+|+|+.+.
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  304 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCAD  304 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            468999999999999999999999999999884

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=90.23  E-value=0.13  Score=49.38  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             CCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEe-cCC
Q 015614          366 LAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFD-IDF  401 (403)
Q Consensus       366 ~~~~~~lilG-aGGaarai~~al~~~g~~i~v~n-R~~  401 (403)
                      +++|++||.| +||.|++++..|++.|++|+++. |+.
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~   81 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA   81 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            5688999998 58999999999999999999988 864

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=90.18  E-value=0.36  Score=47.09  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|+++.|+|-|..|++++..|...|++|+.++|+.
T Consensus       169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  206 (345)
T 4g2n_A          169 MGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTR  206 (345)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCC
Confidence            45789999999999999999999999999999999985

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=90.17  E-value=0.32  Score=45.33  Aligned_cols=38  Identities=18%  Similarity=0.171  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   78 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   78 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            3456899999985 8889999999999999999888864

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=89.97  E-value=0.32  Score=47.76  Aligned_cols=39  Identities=15%  Similarity=0.220  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCe-EEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~-i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++ |++++|+.+
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~  199 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQAL  199 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCC
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCcc
Confidence            457899999999999999999999999996 999999763

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=89.97  E-value=0.33  Score=49.42  Aligned_cols=35  Identities=29%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ....++|+|+|-+|.+++..|++.|.+|+|+.|..
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~  125 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRI  125 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEecc
Confidence            35789999999999999999999999999998763

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=89.91  E-value=0.15  Score=48.80  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=32.1

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|.|+ ||.+.+++..++..|++|+++.|+.+
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  185 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAE  185 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5889999998 99999999999999999998888753

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=89.89  E-value=0.48  Score=45.98  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +..+++++|.|+ |+.|++++..|.+.|.+|+++.|+.+
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   64 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   64 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            345689999997 88999999999999999999999754

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=89.86  E-value=0.2  Score=48.57  Aligned_cols=36  Identities=28%  Similarity=0.311  Sum_probs=32.0

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++++|.|+ ||.+++++..++..|++|+++.|+.+
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~  206 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE  206 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChh
Confidence            5789999997 99999999999999999998888643

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=89.79  E-value=0.35  Score=49.43  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|+++.|+|.|..|++++..|..+|++|++++|++
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~  310 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDP  310 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCH
T ss_pred             cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            45789999999999999999999999999999999975

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=89.76  E-value=0.76  Score=46.20  Aligned_cols=54  Identities=26%  Similarity=0.339  Sum_probs=43.2

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEecC
Q 015614          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID  400 (403)
Q Consensus       338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR~  400 (403)
                      -++|.+..++..+.+.+         .++++++++|.|.|.+|+.++.-|.++|++|. |.+++
T Consensus       214 Tg~Gv~~~~~~~~~~~g---------~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~  268 (440)
T 3aog_A          214 TGRGVFITAAAAAEKIG---------LQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHT  268 (440)
T ss_dssp             HHHHHHHHHHHHHHHHT---------CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             hHHHHHHHHHHHHHhcC---------CCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            35688888877776433         46789999999999999999999999999654 77653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=89.74  E-value=0.28  Score=48.85  Aligned_cols=34  Identities=38%  Similarity=0.509  Sum_probs=30.5

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...++|||+|-++.++++.|++.|.+|+|+.|..
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~   60 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR   60 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3579999999999999999999999999998864

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=89.73  E-value=0.39  Score=45.66  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++++|.|+ |+.|++++..|.+.|.+|+++.|+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            45789999997 8899999999999999999998853

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=89.65  E-value=0.24  Score=47.04  Aligned_cols=34  Identities=15%  Similarity=0.214  Sum_probs=31.5

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .++.|+|+|..|++++..|.+.|.+|++++|+.+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            6799999999999999999999999999999865

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=89.65  E-value=0.3  Score=47.61  Aligned_cols=36  Identities=31%  Similarity=0.370  Sum_probs=31.7

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|.+++|+|+||.+.+++..++..|++|+++.++.+
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~  229 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA  229 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999999999999988889999888887754

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=89.65  E-value=0.37  Score=47.06  Aligned_cols=38  Identities=26%  Similarity=0.289  Sum_probs=35.2

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|+.++|+.
T Consensus       160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~  197 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQ  197 (351)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSC
T ss_pred             ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCc
Confidence            45789999999999999999999999999999999975

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=89.57  E-value=0.32  Score=49.56  Aligned_cols=38  Identities=37%  Similarity=0.553  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|++++|+|.|..|++++..|..+|++|++++|++
T Consensus       253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~  290 (479)
T 1v8b_A          253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP  290 (479)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCCh
Confidence            45789999999999999999999999999999999875

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=89.56  E-value=0.17  Score=48.63  Aligned_cols=36  Identities=25%  Similarity=0.183  Sum_probs=31.8

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|.|+ ||.+++++..++..|++|+++.|+.+
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~  191 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE  191 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999997 99999999999999999998888643

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=89.55  E-value=0.24  Score=47.64  Aligned_cols=36  Identities=36%  Similarity=0.432  Sum_probs=32.2

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|.|+ ||.+.+++..++..|++|+++.|+.+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~  195 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTA  195 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            5789999998 99999999999999999988888754

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=89.55  E-value=0.38  Score=46.45  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=30.7

Q ss_pred             CeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       369 ~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +++||.|+ |+.|++++..|.+.|.+|+++.|+.+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            68999997 88999999999999999999998753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.53  E-value=0.2  Score=48.08  Aligned_cols=36  Identities=36%  Similarity=0.547  Sum_probs=31.8

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|.|+||.+.+++..++..|++|+.+.++.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~  201 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDA  201 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            578999999999999999988999999988887643

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=89.52  E-value=0.3  Score=47.58  Aligned_cols=39  Identities=26%  Similarity=0.403  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|-|..|++++..|...|++|+.++|+.+
T Consensus       144 ~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~  182 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYN  182 (343)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChh
Confidence            356789999999999999999999999999999999864

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=89.52  E-value=11  Score=35.63  Aligned_cols=141  Identities=13%  Similarity=0.091  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (403)
                      .+.+++.+.++++.+.|+..|=+.        + ..+...+   +.+++++. |+-.=+.|-.   +-+.+..=.+.+++
T Consensus        71 ~T~~dI~~lc~eA~~~g~aaVCV~--------P-~~V~~a~~~L~~s~V~V~-tVigFP~G~~---~~~~Kv~Ea~~Ai~  137 (288)
T 3oa3_A           71 ATGSQIDVLCAEAKEYGFATVCVR--------P-DYVSRAVQYLQGTQVGVT-CVIGFHEGTY---STDQKVSEAKRAMQ  137 (288)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEC--------G-GGHHHHHHHTTTSSCEEE-EEESTTTSCS---CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcEEEEC--------H-HHHHHHHHHcCCCCCeEE-EEeCCCCCCC---cHHHHHHHHHHHHH
Confidence            456788888888888888877652        2 1343333   33355554 5532222222   33566666788999


Q ss_pred             cCCcEEEEeccccc----------hHHHHHHhc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe--e-
Q 015614           97 LGADYVDFELKVAS----------NILGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF--S-  162 (403)
Q Consensus        97 ~g~~yvDiEl~~~~----------~~~~~l~~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~--~-  162 (403)
                      .|++-||+=++...          +.+..+... +....|+|+--..    .+.+++....+-+.+.|||+||--+  . 
T Consensus       138 ~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~----Lt~eei~~A~~ia~eaGADfVKTSTGf~~  213 (288)
T 3oa3_A          138 NGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQ----LTADEIIAGCVLSSLAGADYVKTSTGFNG  213 (288)
T ss_dssp             TTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGG----CCHHHHHHHHHHHHHTTCSEEECCCSSSS
T ss_pred             cCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCC----CCHHHHHHHHHHHHHcCCCEEEcCCCCCC
Confidence            99999996554421          123333322 2234788886543    2467788888888899999999873  1 


Q ss_pred             -cCCHhHHHHHHHHhc
Q 015614          163 -VNDITEIARIFQLLS  177 (403)
Q Consensus       163 -~~~~~D~~~ll~~~~  177 (403)
                       ..+.+|+..+.+...
T Consensus       214 ~GAT~edv~lmr~~v~  229 (288)
T 3oa3_A          214 PGASIENVSLMSAVCD  229 (288)
T ss_dssp             CCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence             456788866666553

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=89.46  E-value=0.27  Score=47.15  Aligned_cols=37  Identities=11%  Similarity=0.164  Sum_probs=32.4

Q ss_pred             CCCeEEEEcch-hHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          367 AGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaG-Gaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      .|++++|+|+| |.+.+++..++..|++|+++.|+.+|
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~  181 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKH  181 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            57899999987 88999998888899999999988764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=89.44  E-value=0.28  Score=47.52  Aligned_cols=36  Identities=25%  Similarity=0.216  Sum_probs=32.0

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|+|+||.+.+++..++.+|++|+++.++.+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~  215 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNK  215 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            578999999999999999888888999988888765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=89.42  E-value=0.27  Score=52.09  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=30.6

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ...|+|||+|.+|.++++.|++.|.+|+|+.+.
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  296 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCAD  296 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence            367999999999999999999999999999885

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=89.37  E-value=0.45  Score=45.29  Aligned_cols=35  Identities=17%  Similarity=0.126  Sum_probs=31.3

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++||.|| |+.|++++..|.+.|.+|+++.|+.
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   59 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS   59 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999995 8889999999999999999999864

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=89.37  E-value=0.44  Score=45.45  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++++|.|+ |+.|++++..|.+.|.+|+++.|+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   61 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            34689999997 8999999999999999999999864

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=89.26  E-value=0.41  Score=47.52  Aligned_cols=39  Identities=15%  Similarity=-0.050  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|++++|+.+
T Consensus       187 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~  225 (393)
T 2nac_A          187 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL  225 (393)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            357899999999999999999999999999999999753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=89.25  E-value=0.19  Score=48.43  Aligned_cols=36  Identities=28%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .|++++|+|+|+.+.+++..++..|+ +|+++.|+.+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~  203 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDF  203 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            68899999999999999999999999 9999988743

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=89.24  E-value=4.8  Score=36.34  Aligned_cols=90  Identities=14%  Similarity=0.222  Sum_probs=55.1

Q ss_pred             eeEEEeccc----CCHHHHHHHHHHHHhcCCCEEEEEecCC--CCCCCc---hHHHHHHhcCCCcEEEEeecCCCCCCCC
Q 015614           11 TMICAPLMA----QSVEQVLSNMYQAKAEGADVVEIRLDCI--NNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYE   81 (403)
Q Consensus        11 ~~icv~l~~----~~~~e~~~~~~~~~~~~~D~vElRlD~l--~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~   81 (403)
                      ..+|..+.+    ...+.-..+++.+.+.|+|.||+-++.-  ...+..   +.+..+++..+ |+++-+.-  |.+.  
T Consensus        54 v~v~~v~~~P~g~~~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~-pv~vKvi~--e~~~--  128 (225)
T 1mzh_A           54 VKVCCVIGFPLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP-SAVHKVIV--ETPY--  128 (225)
T ss_dssp             SEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT-TSEEEEEC--CGGG--
T ss_pred             CceeeEecCCCCccchhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc-CceEEEEE--eCCC--
Confidence            355655433    3344445667777889999999766542  111211   34556666666 87766621  1112  


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEe
Q 015614           82 GDEHKRLEALHLAEDLGADYVDFE  105 (403)
Q Consensus        82 ~~~~~~~~ll~~~~~~g~~yvDiE  105 (403)
                      .++++..++.+.+.+.|+|+|..-
T Consensus       129 l~~~~~~~~a~~a~eaGad~I~ts  152 (225)
T 1mzh_A          129 LNEEEIKKAVEICIEAGADFIKTS  152 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEECC
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEC
Confidence            356677888889999999999443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=89.24  E-value=0.24  Score=47.87  Aligned_cols=35  Identities=31%  Similarity=0.324  Sum_probs=30.8

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .|++++|+|+||.+.+++..++.+|++|+++.|+.
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~  202 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP  202 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            47899999999999999998888999988887764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=89.23  E-value=0.24  Score=48.18  Aligned_cols=36  Identities=31%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|+|+|+.+.+++..++..|++|+++.++.+
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~  224 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE  224 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence            578999999999999999999999999888887643

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.08  E-value=0.21  Score=47.82  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCC--eEEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~--~i~v~nR~~~  402 (403)
                      .+++.|||+|..|.+++..|.+.|.  +|++++|+++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~   69 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   69 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHH
Confidence            3789999999999999999999998  8999999853

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=88.91  E-value=0.38  Score=44.90  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=30.0

Q ss_pred             CeEEEEcchhHHHHHHHHHHHC-CCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~-g~~i~v~nR~~  401 (403)
                      ..++|+|+|.++.++++.|++. |.+|+|+.|..
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4799999999999999999997 99999998864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=88.84  E-value=0.36  Score=47.03  Aligned_cols=37  Identities=30%  Similarity=0.474  Sum_probs=32.4

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .|++++|+|+|+.+.+++..++.+|+ +|+.+.++.+|
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  232 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK  232 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            57899999999999999998889999 89988877653

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=88.83  E-value=0.45  Score=46.06  Aligned_cols=37  Identities=24%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCC-CeEEEEecCCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g-~~i~v~nR~~~  402 (403)
                      +++++++|.|| |+.|++++..|.+.| .+|+++.|+.+
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLS   68 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTT
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCC
Confidence            56789999996 889999999999999 89999998753

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=88.82  E-value=2.6  Score=39.89  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHhcCCCEE-EEE----ecC-CCC---CCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVV-EIR----LDC-INN---FQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~v-ElR----lD~-l~~---~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (403)
                      +..+..+   .+.+.|+|+| +++    .+- ...   ....+.+..+++...+|++.-.|..        .    .+..
T Consensus        29 ~~~~~a~---~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g--------~----~~~~   93 (305)
T 2nv1_A           29 INAEQAK---IAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIG--------H----IVEA   93 (305)
T ss_dssp             SSHHHHH---HHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTT--------C----HHHH
T ss_pred             CHHHHHH---HHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEeccccc--------c----hHHH
Confidence            4445544   3445799999 775    222 111   1123567778777899999777642        1    1233


Q ss_pred             HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      +.+.+.|++.|+.--......+.++...+.-+..++++.|+      .++..    ++.+.|+|++++-
T Consensus        94 ~~~~a~GAd~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~------~~e~~----~a~~~Gad~V~~~  152 (305)
T 2nv1_A           94 RVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRD------LGEAT----RRIAEGASMLRTK  152 (305)
T ss_dssp             HHHHHHTCSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESS------HHHHH----HHHHTTCSEEEEC
T ss_pred             HHHHHCCCCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCC------HHHHH----HHHHCCCCEEEec
Confidence            44556899999721111111111121122346778888875      23332    2336799999884

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=88.77  E-value=0.36  Score=46.93  Aligned_cols=37  Identities=32%  Similarity=0.589  Sum_probs=32.5

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .|++++|+|+||.+.+++..++.+|+ +|+.+.|+.+|
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~  228 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK  228 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            57899999999999999998889999 89998887653

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=88.75  E-value=0.71  Score=44.04  Aligned_cols=122  Identities=15%  Similarity=0.237  Sum_probs=74.5

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccch-----HHHHcccccCCHH--HhhccceeE--E
Q 015614          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDEVHPL--AQAIAAVNT--I  323 (403)
Q Consensus       258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K-----~~v~~~~d~~~~~--A~~igavNT--i  323 (403)
                      ....+++|+......++.    +++.+.++.+ .++.+.|+-|-.|.-     +.++..+   +|.  +.-+...|.  +
T Consensus        75 ~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I---~p~KDVDG~hp~N~G~L  151 (303)
T 4b4u_A           75 GNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAI---SLAKDVDGVTCLGFGRM  151 (303)
T ss_dssp             HHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHS---CGGGCTTCCCHHHHHHH
T ss_pred             HHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhcc---CcccccCccCcchHHHh
Confidence            356788999876555543    3566666667 567899999999963     2232222   111  000000110  0


Q ss_pred             EEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          324 IRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       324 ~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      ...  +..+  .-.--.|++..|++.             +.++.||+++|+|.+.. +|.++.-|.+.|+.|+++.+
T Consensus       152 ~~g--~~~~--~PcTp~gv~~lL~~~-------------~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs  211 (303)
T 4b4u_A          152 AMG--EAAY--GSATPAGIMTILKEN-------------NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHS  211 (303)
T ss_dssp             HTT--CCCC--CCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred             cCC--CCcc--cCccHHHHHHHHHHH-------------CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecC
Confidence            000  0000  112236777777653             36789999999996555 99999999999999998864

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=88.72  E-value=4.9  Score=37.60  Aligned_cols=140  Identities=10%  Similarity=0.053  Sum_probs=84.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHc
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (403)
                      +.+++++.+++..+.|||+|-+....-.+.+.   ...++.+++..+.|+.+--.              +-+.++++++.
T Consensus        32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~--------------~~~v~~aal~a   97 (271)
T 2yci_X           32 DPRPIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDST--------------NPDAIEAGLKV   97 (271)
T ss_dssp             CCHHHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECS--------------CHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCC--------------CHHHHHHHHHh
Confidence            56778888888889999999999987433221   12334455556888754311              34677888888


Q ss_pred             --CCcEE-EEecccc--chHHHHHHhccCCCcEEEEeccCCCCCCC-----HhHHHHHHHHHHHcCCCEEEEEe-----e
Q 015614           98 --GADYV-DFELKVA--SNILGKQYSSHQSGTRFIVSCNLDCETPS-----EEDLGYLVSRMQATGADIIKLVF-----S  162 (403)
Q Consensus        98 --g~~yv-DiEl~~~--~~~~~~l~~~~~~~~kiI~S~H~f~~tp~-----~~~l~~~~~~~~~~gadivKia~-----~  162 (403)
                        |++.| |+-....  ++..+ +.  .+.+..+|+.+-+-.++|.     .+.+.+.++.+.+.|.+-=+|..     .
T Consensus        98 ~~Ga~iINdvs~~~d~~~~~~~-~~--a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gf  174 (271)
T 2yci_X           98 HRGHAMINSTSADQWKMDIFFP-MA--KKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILP  174 (271)
T ss_dssp             CCSCCEEEEECSCHHHHHHHHH-HH--HHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCC
T ss_pred             CCCCCEEEECCCCccccHHHHH-HH--HHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCc
Confidence              98776 5765431  22222 22  2346678887654456775     34467777788887753111332     2


Q ss_pred             -cCCHhHHHHHHHHhc
Q 015614          163 -VNDITEIARIFQLLS  177 (403)
Q Consensus       163 -~~~~~D~~~ll~~~~  177 (403)
                       ..+.+.++.+++-+.
T Consensus       175 igk~~~~~~~~l~~l~  190 (271)
T 2yci_X          175 VNVAQEHAVEVLETIR  190 (271)
T ss_dssp             TTTSTHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHH
Confidence             345666666655543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=88.72  E-value=0.22  Score=47.94  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .|++++|+|+||.+.+++..++..|+ +|+.+.|+.+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~  200 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPY  200 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            68899999999999999998889999 9999988643

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=88.63  E-value=0.38  Score=46.83  Aligned_cols=37  Identities=30%  Similarity=0.536  Sum_probs=32.4

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .|++++|+|+|+.+.+++..++.+|+ +|+.+.++.+|
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~  229 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK  229 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            57899999999999999998889999 89988887653

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=88.52  E-value=13  Score=34.00  Aligned_cols=142  Identities=15%  Similarity=0.123  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      .+.+++.+..+++.+.+++.|=+.--+.      .......+.+++++- |+=.=+.|-.   +.+.+..=.+.|++.|+
T Consensus        40 ~t~~~i~~lc~eA~~~~~~aVcV~p~~v------~~a~~~L~~s~v~v~-tVigFP~G~~---~~~~Kv~Ea~~Ai~~GA  109 (239)
T 3ngj_A           40 ATEEQIRKLCSEAAEYKFASVCVNPTWV------PLCAELLKGTGVKVC-TVIGFPLGAT---PSEVKAYETKVAVEQGA  109 (239)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHTTSSCEEE-EEESTTTCCS---CHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhcCCcEEEECHHHH------HHHHHHhCCCCCeEE-EEeccCCCCC---chHHHHHHHHHHHHcCC
Confidence            4567888888888888888776521111      122233333454444 4432222222   33566666778999999


Q ss_pred             cEEEEeccccc----------hHHHHHHhc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--e--ecC
Q 015614          100 DYVDFELKVAS----------NILGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--F--SVN  164 (403)
Q Consensus       100 ~yvDiEl~~~~----------~~~~~l~~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia--~--~~~  164 (403)
                      +-||+=++...          +.+..+... +....|+|+---.    .+.+++....+-+.+.|||+||--  +  -..
T Consensus       110 dEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~----Lt~eei~~a~~ia~~aGADfVKTSTGf~~ggA  185 (239)
T 3ngj_A          110 EEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCY----LTNEEKVEVCKRCVAAGAEYVKTSTGFGTHGA  185 (239)
T ss_dssp             SEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGG----SCHHHHHHHHHHHHHHTCSEEECCCSSSSCCC
T ss_pred             CEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCC----CCHHHHHHHHHHHHHHCcCEEECCCCCCCCCC
Confidence            99998666531          122333322 2234788886543    256778888888889999999988  2  235


Q ss_pred             CHhHHHHHHHH
Q 015614          165 DITEIARIFQL  175 (403)
Q Consensus       165 ~~~D~~~ll~~  175 (403)
                      +.+|+..+.+.
T Consensus       186 t~~dv~lmr~~  196 (239)
T 3ngj_A          186 TPEDVKLMKDT  196 (239)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHh
Confidence            67887666654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=88.50  E-value=0.43  Score=46.64  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|+.++|+
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  192 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRE  192 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSH
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCC
Confidence            4568999999999999999999999999999999986

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=88.49  E-value=0.44  Score=44.13  Aligned_cols=34  Identities=32%  Similarity=0.377  Sum_probs=28.2

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEec
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR  399 (403)
                      .++|+++|-|+ ||.|++++..|.+.|++|.+..+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~   59 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYA   59 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            45899999985 89999999999999998887643

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=88.49  E-value=0.48  Score=44.01  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcc---hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGa---GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++|+++|.|+   +|.|++++..|.+.|++|+++.|+.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            467899999995   4699999999999999999999875

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=88.48  E-value=0.29  Score=47.74  Aligned_cols=37  Identities=41%  Similarity=0.563  Sum_probs=32.7

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .+.+++|+|+|+.+.+++..++.+|+ +|+++.++.+|
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~  230 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKK  230 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            57899999999999999998889999 89999887653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=88.43  E-value=0.39  Score=48.00  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=30.3

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..++|+|+|.++.++++.|++.|.+|.|+.+..
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~   59 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   59 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            569999999999999999999999999998764

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=88.41  E-value=14  Score=37.90  Aligned_cols=147  Identities=15%  Similarity=0.078  Sum_probs=92.6

Q ss_pred             HHHHHhcCCCEEEEEe----cC---CCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614           29 MYQAKAEGADVVEIRL----DC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD  100 (403)
Q Consensus        29 ~~~~~~~~~D~vElRl----D~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~  100 (403)
                      ++...+.|.+.||.=-    |.   +-..++.+.+..+++. .+.++..-+|..+-=|.....++...+.++.+.+.|++
T Consensus        53 a~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~~aGvd  132 (539)
T 1rqb_A           53 CADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMD  132 (539)
T ss_dssp             HHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHHHHHHHHhCCCC
Confidence            3344457999999862    32   1122345667777754 35566666676655565455565566778899999999


Q ss_pred             EEEEeccccc--hHHHHHHhccCCCcEE--EEeccCCCCCC-CHhHHHHHHHHHHHcCCCEEEEEeecC--CHhHHHHHH
Q 015614          101 YVDFELKVAS--NILGKQYSSHQSGTRF--IVSCNLDCETP-SEEDLGYLVSRMQATGADIIKLVFSVN--DITEIARIF  173 (403)
Q Consensus       101 yvDiEl~~~~--~~~~~l~~~~~~~~ki--I~S~H~f~~tp-~~~~l~~~~~~~~~~gadivKia~~~~--~~~D~~~ll  173 (403)
                      .|-|=....+  .....+...+..+.++  -+|+=+  .++ +.+.+.++.+++.+.|||++-|+=|.-  ++.++.++.
T Consensus       133 ~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~--~~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv  210 (539)
T 1rqb_A          133 VFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTI--SPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDII  210 (539)
T ss_dssp             EEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCC--STTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHH
T ss_pred             EEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeee--CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHH
Confidence            9887544322  2222222233345555  455543  233 457899999999999999999986653  577877777


Q ss_pred             HHhc
Q 015614          174 QLLS  177 (403)
Q Consensus       174 ~~~~  177 (403)
                      +.+.
T Consensus       211 ~~l~  214 (539)
T 1rqb_A          211 KAIK  214 (539)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=88.40  E-value=0.47  Score=46.72  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=31.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..++|+|||||-++.++++.|.+.|.+|.|+.+.
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            4579999999999999999999999999999875

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=88.35  E-value=0.41  Score=49.27  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=31.1

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...|+|+|+|.+|.+++..|++.|++|.|+.|..
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~   59 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTD   59 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3579999999999999999999999999999864

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=88.17  E-value=0.41  Score=45.78  Aligned_cols=36  Identities=22%  Similarity=0.475  Sum_probs=29.2

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCC-CeEEEEecCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g-~~i~v~nR~~  401 (403)
                      .++++++|.|+ |+.|++++..|.+.| .+|+++.|+.
T Consensus        44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~   81 (357)
T 2x6t_A           44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLK   81 (357)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            34688999997 889999999999999 6999998864

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=88.16  E-value=3.3  Score=39.63  Aligned_cols=87  Identities=15%  Similarity=0.093  Sum_probs=59.1

Q ss_pred             eEEEecccCC-------HHHHHHHHHHHHhcCCCEEEEEecCCCC--C----CC---chHHHHHHhcC---------CCc
Q 015614           12 MICAPLMAQS-------VEQVLSNMYQAKAEGADVVEIRLDCINN--F----QP---GKDLEIILTKK---------PLP   66 (403)
Q Consensus        12 ~icv~l~~~~-------~~e~~~~~~~~~~~~~D~vElRlD~l~~--~----~~---~~~l~~l~~~~---------~~P   66 (403)
                      .+.+++.+.+       .+++..-++.+. .|+|+||+-+-+=..  .    +.   .+.++.+++..         +.|
T Consensus       135 ~~~v~i~~~~~~~i~~~~~~~~~aa~~~~-~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~P  213 (336)
T 1f76_A          135 VLGINIGKNKDTPVEQGKDDYLICMEKIY-AYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVP  213 (336)
T ss_dssp             EEEEEECCCTTSCGGGTHHHHHHHHHHHG-GGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             cEEEEecCCCCCcccccHHHHHHHHHHHh-ccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCc
Confidence            5678887766       777777776654 489999997642110  0    00   13455566554         799


Q ss_pred             EEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           67 VLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        67 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      +++-++..       .++++..++.+.+.+.|+|+|++--
T Consensus       214 v~vKi~~~-------~~~~~~~~~a~~l~~~Gvd~i~vsn  246 (336)
T 1f76_A          214 IAVKIAPD-------LSEEELIQVADSLVRHNIDGVIATN  246 (336)
T ss_dssp             EEEECCSC-------CCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred             eEEEecCC-------CCHHHHHHHHHHHHHcCCcEEEEeC
Confidence            99877632       3566777888899999999999863

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=88.14  E-value=0.24  Score=47.36  Aligned_cols=37  Identities=27%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             CCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..|++++|.| +||.+.+++..++..|++|+++.|+.+
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  184 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE  184 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578999999 799999999999999999988888643

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=88.05  E-value=0.34  Score=47.08  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .|++++|+|+|+.+.+++..++.+|+ +|+++.++.+|
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  228 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK  228 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHH
Confidence            57899999999999999988888899 89888877543

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=88.03  E-value=0.22  Score=47.66  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++|.|+ ||.+++++..++..|++|+++.|+.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~  180 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE  180 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5789999995 9999999999999999999988875

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=88.00  E-value=0.2  Score=47.75  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             CCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++++|.| +||.+++++..++..|++|+++.|+.+
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~  176 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ  176 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            578999999 699999999999999999999888743

>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4

Probab=87.94  E-value=6.9  Score=36.23  Aligned_cols=78  Identities=18%  Similarity=0.205  Sum_probs=43.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCC----CCCCchHHHHHHhcCCCcEEEEeecCCCCCCC-CCC---H---HHHH
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCIN----NFQPGKDLEIILTKKPLPVLIVYRPKWAGGLY-EGD---E---HKRL   88 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~-~~~---~---~~~~   88 (403)
                      .++++.++   .+.+.|.|.||++.+.+.    .....+.++.+.+..++.+....=.    +.+ ..+   .   +...
T Consensus        36 ~~~~~~l~---~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~----~~~~~~~~~~~~~~~~~~  108 (296)
T 2g0w_A           36 VSFPKRVK---VAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVEYI----TQWGTAEDRTAEQQKKEQ  108 (296)
T ss_dssp             SCHHHHHH---HHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEECB----CCCSSTTTCCHHHHHHHH
T ss_pred             CCHHHHHH---HHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHHcCCceEeehhh----hccccCChHHHHHHHHHH
Confidence            35566654   445679999999986331    1122345666666777776543211    112 111   1   1224


Q ss_pred             HHHHHHHHcCCcEEEE
Q 015614           89 EALHLAEDLGADYVDF  104 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDi  104 (403)
                      +.++.|.++|+.+|=+
T Consensus       109 ~~i~~A~~lGa~~v~~  124 (296)
T 2g0w_A          109 TTFHMARLFGVKHINC  124 (296)
T ss_dssp             HHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHcCCCEEEE
Confidence            5566777888887754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=87.91  E-value=0.25  Score=47.45  Aligned_cols=36  Identities=28%  Similarity=0.166  Sum_probs=31.8

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++++|.|+ ||.+++++..++..|++|+.+.|+.+
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~  202 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSED  202 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999998 99999999999999999988888643

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=87.88  E-value=0.5  Score=47.33  Aligned_cols=66  Identities=17%  Similarity=0.035  Sum_probs=43.6

Q ss_pred             EEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-hhHHHHHHHHHHH-CCCeEEEEecCCC
Q 015614          332 LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKS-RGARVVIFDIDFG  402 (403)
Q Consensus       332 l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-GGaarai~~al~~-~g~~i~v~nR~~~  402 (403)
                      ++..++.-.|....+.+...-....     ......+|.+||.|| +|.++|++.+|++ .|++|.+++|+.+
T Consensus        30 ~~~~~a~p~g~~~~v~~qi~y~~~~-----~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~   97 (422)
T 3s8m_A           30 FICTTTHPLGCERNVLEQIAATRAR-----GVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKP   97 (422)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHHHHT-----CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             eeeecCCchhHHHHHHHHHHHHhhc-----cccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCch
Confidence            5555677677776665432100000     001224789999985 7999999999999 9999999988754

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=87.84  E-value=0.25  Score=47.77  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=31.8

Q ss_pred             CCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++++|.| +||.+++++..++..|++|+++.|+.+
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~  198 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQK  198 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            578999999 699999999999999999998888643

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=87.82  E-value=0.55  Score=48.29  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=30.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHH---CCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKS---RGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~---~g~~i~v~nR~  400 (403)
                      .++|+|+|+|-+|.++|.+|++   .|.+|+|+.|.
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~   60 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAP   60 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence            4689999999999999999999   88999999985

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=87.81  E-value=0.21  Score=46.93  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCC---eEEEEecCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGA---RVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~---~i~v~nR~~  401 (403)
                      +++|+++|.|+ ||.|++++..|.+.|+   +|+++.|+.
T Consensus        31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~   70 (287)
T 3rku_A           31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL   70 (287)
T ss_dssp             HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCH
Confidence            46899999995 8899999999998886   899999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=87.80  E-value=0.33  Score=46.91  Aligned_cols=36  Identities=33%  Similarity=0.473  Sum_probs=31.5

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .|++++|+|+|+.+.+++..++.+|+ +|+++.++.+
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  207 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT  207 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            47899999999999999998888999 8998887643

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=87.80  E-value=7.6  Score=35.00  Aligned_cols=146  Identities=14%  Similarity=0.130  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEec-C-C-CCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHc
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLD-C-I-NNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD-~-l-~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (403)
                      +..+..+   .+.+.|+|.+.++.. . + ..... +.++.+++..++|+++.      ||..  +.+ +   ++.+++.
T Consensus        33 d~~~~a~---~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~------ggI~--~~~-~---~~~~l~~   96 (244)
T 1vzw_A           33 SPLEAAL---AWQRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVELS------GGIR--DDD-T---LAAALAT   96 (244)
T ss_dssp             CHHHHHH---HHHHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEEE------SSCC--SHH-H---HHHHHHT
T ss_pred             CHHHHHH---HHHHcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEEE------CCcC--CHH-H---HHHHHHc
Confidence            5555544   445679999999852 1 1 22222 46778888889999984      4432  222 2   4566778


Q ss_pred             CCcEEEEecccc--chHHHHHHhccCCCcEEEE--ec-------cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015614           98 GADYVDFELKVA--SNILGKQYSSHQSGTRFIV--SC-------NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI  166 (403)
Q Consensus        98 g~~yvDiEl~~~--~~~~~~l~~~~~~~~kiI~--S~-------H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~  166 (403)
                      |++.|-+-....  .+...++.... + .++++  +.       |.+.+.-  +...+..+++.+.|+|.+=+.....+.
T Consensus        97 Gad~V~lg~~~l~~p~~~~~~~~~~-g-~~~~~~l~~~~g~v~~~g~~~~~--~~~~e~~~~~~~~G~~~i~~~~~~~~~  172 (244)
T 1vzw_A           97 GCTRVNLGTAALETPEWVAKVIAEH-G-DKIAVGLDVRGTTLRGRGWTRDG--GDLYETLDRLNKEGCARYVVTDIAKDG  172 (244)
T ss_dssp             TCSEEEECHHHHHCHHHHHHHHHHH-G-GGEEEEEEEETTEECCSSSCCCC--CBHHHHHHHHHHTTCCCEEEEEC----
T ss_pred             CCCEEEECchHhhCHHHHHHHHHHc-C-CcEEEEEEccCCEEEEcCcccCC--CCHHHHHHHHHhCCCCEEEEeccCccc
Confidence            999988754332  22333333221 1 33433  33       2222111  134556677777899865333211111


Q ss_pred             ----hHHHHHHHHhccCCCCEEEE
Q 015614          167 ----TEIARIFQLLSHCQVPIIAY  186 (403)
Q Consensus       167 ----~D~~~ll~~~~~~~~p~i~~  186 (403)
                          -|...+.++....+.|+|+.
T Consensus       173 ~~~g~~~~~~~~i~~~~~ipvia~  196 (244)
T 1vzw_A          173 TLQGPNLELLKNVCAATDRPVVAS  196 (244)
T ss_dssp             ---CCCHHHHHHHHHTCSSCEEEE
T ss_pred             ccCCCCHHHHHHHHHhcCCCEEEE
Confidence                13333444444457788764

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=87.77  E-value=1  Score=44.95  Aligned_cols=52  Identities=25%  Similarity=0.360  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEec
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI  399 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR  399 (403)
                      +.|.+.++++.+.+.+         .++++++++|.|.|.+|..++.-|.++|++|. |.+.
T Consensus       190 g~Gv~~~~~~~~~~~g---------~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~  242 (421)
T 1v9l_A          190 GFGVAVATREMAKKLW---------GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI  242 (421)
T ss_dssp             HHHHHHHHHHHHHHHH---------SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             HHHHHHHHHHHHHhcC---------CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4688778777766433         46789999999999999999999999999754 7665

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=87.77  E-value=0.28  Score=47.26  Aligned_cols=36  Identities=28%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             CCCeEEEEcch-hHHHHHHHHHHHC-CCeEEEEecCCC
Q 015614          367 AGRMFVLAGAG-GAGRALAFGAKSR-GARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaG-Gaarai~~al~~~-g~~i~v~nR~~~  402 (403)
                      .+++++|.|+| |.+++++..++.. |++|+++.|+.+
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~  207 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE  207 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            57899999998 9999999999988 999988887643

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=87.74  E-value=7  Score=40.22  Aligned_cols=145  Identities=14%  Similarity=0.164  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCc---hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      .++...++.+++.|+++|-||.--+...+..   +++..+-+..+.|+|+.-|.                  +.+++.|+
T Consensus        25 ~~l~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIND~~------------------dlA~~~gA   86 (540)
T 3nl6_A           25 KTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDRI------------------DVAMAIGA   86 (540)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEEECSCS------------------HHHHHTTC
T ss_pred             chHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEeCcH------------------HHHHHcCC
Confidence            4566677788889999999997655432211   22333335568999985321                  24567889


Q ss_pred             cEEEEeccccc-hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcC---CCEEEEE--eecCCHhH-----
Q 015614          100 DYVDFELKVAS-NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATG---ADIIKLV--FSVNDITE-----  168 (403)
Q Consensus       100 ~yvDiEl~~~~-~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~g---adivKia--~~~~~~~D-----  168 (403)
                      +.|=+.-+... ...++++   .++..|-+|.|+      .+|+    .++.+.|   +|++.+-  +...+..+     
T Consensus        87 dGVHLgq~dl~~~~ar~~l---g~~~iiG~S~ht------~eea----~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~  153 (540)
T 3nl6_A           87 DGIHVGQDDMPIPMIRKLV---GPDMVIGWSVGF------PEEV----DELSKMGPDMVDYIGVGTLFPTLTKKNPKKAP  153 (540)
T ss_dssp             SEEEECTTSSCHHHHHHHH---CTTSEEEEEECS------HHHH----HHHHHTCC--CCEEEESCCSCCCCCC----CC
T ss_pred             CEEEEChhhcCHHHHHHHh---CCCCEEEEECCC------HHHH----HHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCC
Confidence            98877654322 2233332   456678889994      3343    4566789   9999982  22222222     


Q ss_pred             -----HHHHHHHhcc---CCCCEEEEEcCccchhhhhh
Q 015614          169 -----IARIFQLLSH---CQVPIIAYSVGERGLVSQLL  198 (403)
Q Consensus       169 -----~~~ll~~~~~---~~~p~i~~~MG~~G~~SRil  198 (403)
                           +.++.+...+   .++|+++++==....+.+++
T Consensus       154 ~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~  191 (540)
T 3nl6_A          154 MGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVL  191 (540)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCEEEEESSCCTTTHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccCCCCEEEEcCCCHHHHHHHH
Confidence                 2334444322   47899888411233455554

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=87.74  E-value=3.1  Score=38.94  Aligned_cols=108  Identities=19%  Similarity=0.279  Sum_probs=65.7

Q ss_pred             HHHHHhcCCCEEEEEecC--CCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe-
Q 015614           29 MYQAKAEGADVVEIRLDC--INNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFE-  105 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~--l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiE-  105 (403)
                      ++.+...||++|.+--|-  |..  ..+.+..+|+..++|++.-     +   |=.++.   + ++.+...|+|.|=+= 
T Consensus        78 A~~y~~~GA~~isvltd~~~f~G--s~~~l~~ir~~v~lPvl~k-----d---fiid~~---q-v~~A~~~GAD~VlLi~  143 (272)
T 3qja_A           78 AQAYQDGGARIVSVVTEQRRFQG--SLDDLDAVRASVSIPVLRK-----D---FVVQPY---Q-IHEARAHGADMLLLIV  143 (272)
T ss_dssp             HHHHHHTTCSEEEEECCGGGHHH--HHHHHHHHHHHCSSCEEEE-----S---CCCSHH---H-HHHHHHTTCSEEEEEG
T ss_pred             HHHHHHcCCCEEEEecChhhcCC--CHHHHHHHHHhCCCCEEEC-----c---cccCHH---H-HHHHHHcCCCEEEEec
Confidence            445566799999874331  111  1246777888889999931     2   223322   1 355667899998872 


Q ss_pred             ccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614          106 LKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus       106 l~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      -..+.+.++++. ..+.-+..++++.|+      .+|+    +++.+.|+|++.+-
T Consensus       144 a~l~~~~l~~l~~~a~~lGl~~lvev~t------~ee~----~~A~~~Gad~IGv~  189 (272)
T 3qja_A          144 AALEQSVLVSMLDRTESLGMTALVEVHT------EQEA----DRALKAGAKVIGVN  189 (272)
T ss_dssp             GGSCHHHHHHHHHHHHHTTCEEEEEESS------HHHH----HHHHHHTCSEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHCCCcEEEEcCC------HHHH----HHHHHCCCCEEEEC
Confidence            233333344444 234457889999996      3444    34446799999886

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=87.71  E-value=0.37  Score=46.79  Aligned_cols=37  Identities=35%  Similarity=0.606  Sum_probs=32.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .|++++|+|+|+.+.+++..++.+|+ +|+.+.++.+|
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~  227 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK  227 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            57899999999999999998888999 89988877553

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=87.70  E-value=4.8  Score=38.93  Aligned_cols=88  Identities=19%  Similarity=0.285  Sum_probs=55.1

Q ss_pred             ecccCCHHHHHHH----HHHHHhcCCCEEEEEecC--C-----CC---C-CC-------------chHHHHHHhcC--CC
Q 015614           16 PLMAQSVEQVLSN----MYQAKAEGADVVEIRLDC--I-----NN---F-QP-------------GKDLEIILTKK--PL   65 (403)
Q Consensus        16 ~l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~--l-----~~---~-~~-------------~~~l~~l~~~~--~~   65 (403)
                      .++..++++++.+    ++.+.+.|.|.|||..-+  |     .+   . .+             .+.++.+|+..  +.
T Consensus       141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~  220 (349)
T 3hgj_A          141 PLDEAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPREL  220 (349)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCc
Confidence            3444444444333    445567899999999864  1     11   1 11             13445566655  67


Q ss_pred             cEEEEeecC--CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           66 PVLIVYRPK--WAGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        66 PiI~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      ||.+-++..  .+||.   +.++..++.+.+.+.|++||++-.
T Consensus       221 pV~vRls~~~~~~~g~---~~~~~~~la~~L~~~Gvd~i~vs~  260 (349)
T 3hgj_A          221 PLFVRVSATDWGEGGW---SLEDTLAFARRLKELGVDLLDCSS  260 (349)
T ss_dssp             CEEEEEESCCCSTTSC---CHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEeccccccCCCC---CHHHHHHHHHHHHHcCCCEEEEec
Confidence            887766643  23442   456778888999999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=87.66  E-value=0.53  Score=50.33  Aligned_cols=35  Identities=23%  Similarity=0.206  Sum_probs=31.9

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..++++|||+|-++.++++.|++.|.+|+|+.+..
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~  422 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE  422 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            35799999999999999999999999999998853

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=87.64  E-value=1.4  Score=43.97  Aligned_cols=53  Identities=28%  Similarity=0.310  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCC-CCCCeEEEEcchhHHHHHHHHHHH-CCCeEEEEecC
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSP-LAGRMFVLAGAGGAGRALAFGAKS-RGARVVIFDID  400 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~lilGaGGaarai~~al~~-~g~~i~v~nR~  400 (403)
                      +.|...++++.+.+.+         .. ++++++.|+|.|..|+.++.-|.. +|++|..+++.
T Consensus       191 g~Gv~~~~~~~~~~~G---------~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~  245 (419)
T 1gtm_A          191 ARGASYTIREAAKVLG---------WDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS  245 (419)
T ss_dssp             HHHHHHHHHHHHHHTT---------CSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             hhHHHHHHHHHHHHhC---------CcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            5687777777766332         45 789999999999999999999999 99987766543

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=87.62  E-value=0.39  Score=47.14  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             CeEEEEcchhHHHHHHHHHHHC--CCeEEEEecC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDID  400 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~--g~~i~v~nR~  400 (403)
                      ..++|||+|-++.++++.|++.  |.+|+|+.+.
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~   70 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG   70 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            4799999999999999999999  9999999875

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=87.62  E-value=0.43  Score=50.65  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..++++|||+|-++.++++.|++.|.+|+|+.++.
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~  424 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGR  424 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            35789999999999999999999999999999853

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=87.61  E-value=5.1  Score=38.48  Aligned_cols=80  Identities=19%  Similarity=0.221  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecC--C------C--C-CCC-------------chHHHHHHhcCCCcEEEEeecC--CCC
Q 015614           24 QVLSNMYQAKAEGADVVEIRLDC--I------N--N-FQP-------------GKDLEIILTKKPLPVLIVYRPK--WAG   77 (403)
Q Consensus        24 e~~~~~~~~~~~~~D~vElRlD~--l------~--~-~~~-------------~~~l~~l~~~~~~PiI~T~R~~--~eG   77 (403)
                      ++...++.+.+.|.|.|||-.-+  |      +  + ..+             .+.++.+|+..+.|+.+-++..  .+|
T Consensus       145 ~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~  224 (338)
T 1z41_A          145 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDK  224 (338)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTT
T ss_pred             HHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCC
Confidence            34444555667899999998742  1      1  1 111             1344556666688888777753  233


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           78 GLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        78 G~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      |.   +.++..++.+.+.+.|++||++--
T Consensus       225 g~---~~~~~~~~a~~l~~~Gvd~i~v~~  250 (338)
T 1z41_A          225 GL---DIADHIGFAKWMKEQGVDLIDCSS  250 (338)
T ss_dssp             SC---CHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CC---CHHHHHHHHHHHHHcCCCEEEEec
Confidence            32   456788888999999999999853

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=87.61  E-value=0.44  Score=48.48  Aligned_cols=33  Identities=33%  Similarity=0.383  Sum_probs=30.0

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..++|||+|.++.+++..|++.|.+|.|+.+..
T Consensus        42 ~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~   74 (510)
T 4at0_A           42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTS   74 (510)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            469999999999999999999999999998753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=87.61  E-value=0.3  Score=47.30  Aligned_cols=36  Identities=42%  Similarity=0.556  Sum_probs=30.9

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .|++++|+|+||.+.+++..++.+|+ +|+++.++.+
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  215 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEG  215 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            47899999999999999998899999 4888877643

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=87.57  E-value=0.27  Score=47.48  Aligned_cols=35  Identities=31%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             CC--CeEEEEcc-hhHHHHHHHHHHHCCC-eEEEEecCC
Q 015614          367 AG--RMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDF  401 (403)
Q Consensus       367 ~~--~~~lilGa-GGaarai~~al~~~g~-~i~v~nR~~  401 (403)
                      .+  ++++|.|+ ||.+++++..++..|+ +|+++.|+.
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~  196 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH  196 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            46  89999998 9999999999999999 999988864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=87.55  E-value=0.96  Score=46.84  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=42.5

Q ss_pred             CCeEEEEeccHHHHHH--HHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEec
Q 015614          329 DGKLIGYNTDCEASIT--AIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       329 ~g~l~G~NTD~~G~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR  399 (403)
                      +|+.+|-.+|-.....  .|++.+.+            ......++|||+|.++.+++..|+++|.+|.|+.+
T Consensus        78 ~g~~igG~~~l~~~~~~g~L~~~l~~------------~~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A           78 RGKFIGDSQTVLKYYSNDELAGIVNE------------SKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             TTEEEECHHHHHHHHHTTCHHHHHHC------------CSSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEEeeehhhhhhhcCcchhhccc------------ccccccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            6777775555444433  24444431            12246899999999999999999999999999986

>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}

Probab=87.52  E-value=20  Score=34.12  Aligned_cols=167  Identities=13%  Similarity=0.165  Sum_probs=97.1

Q ss_pred             eeEEEecccC------------CHHHHHHHHHHHHhcCCCEEEEEecC-CCCC---CC---chHHHHHHhcCCCcEEEEe
Q 015614           11 TMICAPLMAQ------------SVEQVLSNMYQAKAEGADVVEIRLDC-INNF---QP---GKDLEIILTKKPLPVLIVY   71 (403)
Q Consensus        11 ~~icv~l~~~------------~~~e~~~~~~~~~~~~~D~vElRlD~-l~~~---~~---~~~l~~l~~~~~~PiI~T~   71 (403)
                      ..|++.+++.            |.+|+..+..++.+.||.++=+.+-- -...   ++   .+.+..+|+.++..|.+| 
T Consensus         8 vIIt~A~tGa~~t~~~~P~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~T-   86 (311)
T 3e02_A            8 IIITCAVTGSIHTPTMSPYLPITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDAILNIT-   86 (311)
T ss_dssp             BCEEEECSCSSSCGGGCTTSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCCEEEEC-
T ss_pred             EEEEEcCCCCcCCcccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEEC-
Confidence            4567777762            45899999889999999999987764 2211   11   356677887665544344 


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccch----HHHHHHhccCCCcE-EEEec--cCCCCCCCHhHHHH
Q 015614           72 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN----ILGKQYSSHQSGTR-FIVSC--NLDCETPSEEDLGY  144 (403)
Q Consensus        72 R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~----~~~~l~~~~~~~~k-iI~S~--H~f~~tp~~~~l~~  144 (403)
                       +   ||....+.++|++.+..   +.+|..-++.....-    ...++...+...-+ .+-.+  ..|.+|  .+.+.+
T Consensus        87 -T---gg~~~~~~eerla~~~~---~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~~n~--~~~i~~  157 (311)
T 3e02_A           87 -T---GGGLGMSLDERLAPARA---ARPEVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNT--FSQIER  157 (311)
T ss_dssp             -S---SCSTTCCHHHHHHHHHH---HCCSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCC--HHHHHH
T ss_pred             -C---CCCCCCCHHHHHHHHHh---cCCCeeeecCCCceeccccchhhccccccccchhhcccCCCceecCC--HHHHHH
Confidence             3   44444678888776543   468998887544210    00000000000000 00000  012333  357889


Q ss_pred             HHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc--C-CCCEEEEEcCc
Q 015614          145 LVSRMQATGADIIKLVFSVNDITEIARIFQLLSH--C-QVPIIAYSVGE  190 (403)
Q Consensus       145 ~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~--~-~~p~i~~~MG~  190 (403)
                      +++.|.+.|   +|.=...-+..++..+.++..+  . .+..+-+.||-
T Consensus       158 ~~~~~~e~G---i~pE~e~fd~g~l~~~~~l~~~Gl~~~p~~~~~vlGv  203 (311)
T 3e02_A          158 GMTELGASG---TRFEFECYDVGHLYNLAHFVDRKLVEPPFFLQCVFGI  203 (311)
T ss_dssp             HHHHHHTTT---CEEEEEECSHHHHHHHHHHHHTTSSCSCEEEEEEECC
T ss_pred             HHHHHHHcC---CeEEEEEEcHHHHHHHHHHHHcCCCCCCeEEEEEecC
Confidence            999999988   4666666688888877777543  1 34466677764

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=87.42  E-value=0.46  Score=49.04  Aligned_cols=34  Identities=32%  Similarity=0.530  Sum_probs=30.6

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...|+|||+|.++.+++..|++.|.+|.|+.+..
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~  159 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEP  159 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3579999999999999999999999999998764

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=87.41  E-value=0.66  Score=46.20  Aligned_cols=36  Identities=39%  Similarity=0.631  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++++|+|+|..+|.++.++.++|+++.+++.++
T Consensus        33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            468999999999999999999999999988888654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=87.39  E-value=0.49  Score=43.62  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ....+|.++|.|+ ||.|++++..|.+.|++|.++.|.
T Consensus        21 ~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~   58 (269)
T 3gk3_A           21 SMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSE   58 (269)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            4567889999995 889999999999999998888743

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=87.38  E-value=0.3  Score=47.39  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHC-CCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~-g~~i~v~nR~~~  402 (403)
                      .|++++|+|+||.+.+++..++.. |++|+.+.++.+
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~  222 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE  222 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence            478999999999999999888888 999888887643

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=87.35  E-value=0.23  Score=47.39  Aligned_cols=36  Identities=25%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             CCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|.| +||.+.+++..++..|++|+++.|+.+
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  176 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPE  176 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999 799999999999999999988887643

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=87.28  E-value=11  Score=34.43  Aligned_cols=149  Identities=19%  Similarity=0.118  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCC----CCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNF----QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (403)
                      +..+..+   .+.+.|+|.|+++ |.-...    ...+.++.+++..++|+|+.      ||..+. ++     ++.+++
T Consensus        31 ~~~~~a~---~~~~~Ga~~i~v~-d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~------ggi~~~-~~-----i~~~~~   94 (266)
T 2w6r_A           31 LLRDWVV---EVEKRGAGEILLT-SIDRDGTKSGYDTEMIRFVRPLTTLPIIAS------GGAGKM-EH-----FLEAFL   94 (266)
T ss_dssp             EHHHHHH---HHHHHTCSEEEEE-ETTTSSCSSCCCHHHHHHHGGGCCSCEEEE------SCCCST-HH-----HHHHHH
T ss_pred             CHHHHHH---HHHHCCCCEEEEE-ecCcccCCCcccHHHHHHHHHhcCCCEEEE------CCCCCH-HH-----HHHHHH
Confidence            4445544   4456799999995 543211    12356777877789999983      554322 21     334456


Q ss_pred             cCCcEEEEecccc-----chHHHHHHhccCC--CcEEEEeccCC--C-----CCCCH-----hHHHHHHHHHHHcCCCEE
Q 015614           97 LGADYVDFELKVA-----SNILGKQYSSHQS--GTRFIVSCNLD--C-----ETPSE-----EDLGYLVSRMQATGADII  157 (403)
Q Consensus        97 ~g~~yvDiEl~~~-----~~~~~~l~~~~~~--~~kiI~S~H~f--~-----~tp~~-----~~l~~~~~~~~~~gadiv  157 (403)
                      .|++.|=+--...     .+.++++... .+  ..+++++....  +     .+..|     ....+..+++.+.|++.+
T Consensus        95 ~Gad~v~lg~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i  173 (266)
T 2w6r_A           95 AGADKALAASVFHFREIDMRELKEYLKK-HGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEI  173 (266)
T ss_dssp             HTCSEEECCCCC------CHHHHHHCC-----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEE
T ss_pred             cCCcHhhhhHHHHhCCCCHHHHHHHHHH-cCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEE
Confidence            7888876643322     2334444321 12  23555554320  0     01111     134566677778899876


Q ss_pred             EEEeecCC----HhHHHHHHHHhccCCCCEEEE
Q 015614          158 KLVFSVND----ITEIARIFQLLSHCQVPIIAY  186 (403)
Q Consensus       158 Kia~~~~~----~~D~~~ll~~~~~~~~p~i~~  186 (403)
                      =+.....+    ..|...+.++....+.|+|+.
T Consensus       174 ~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~  206 (266)
T 2w6r_A          174 LLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS  206 (266)
T ss_dssp             EEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEE
T ss_pred             EEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEe
Confidence            54322211    123333444444557888764

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=87.28  E-value=0.6  Score=45.83  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|+++.|+|-|..|++++..|...|++|+.++|+.
T Consensus       172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~  209 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL  209 (365)
T ss_dssp             CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS
T ss_pred             cccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCC
Confidence            45679999999999999999999999999999999874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=87.22  E-value=0.37  Score=47.29  Aligned_cols=36  Identities=36%  Similarity=0.446  Sum_probs=31.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .|++++|+|+||.+.+++..++.+|+ +|+++.++.+
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~  221 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA  221 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHH
Confidence            57899999999999999998888999 7888877643

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=87.15  E-value=0.49  Score=49.12  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..|+|+|+|-++.++++.|++.|++|.|+.|..
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~   82 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLV   82 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            469999999999999999999999999999864

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=87.06  E-value=0.43  Score=49.27  Aligned_cols=33  Identities=33%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..|+|||+|.++.++++.|++.|.+|.|+.+..
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~  154 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP  154 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=87.04  E-value=0.59  Score=44.19  Aligned_cols=36  Identities=17%  Similarity=0.148  Sum_probs=30.8

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      .|++++|+|+|+.+.+++..++..|++|+.+. +.+|
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~  177 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLS  177 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-Chhh
Confidence            58899999999999999998888999888777 5543

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=86.97  E-value=8.6  Score=37.21  Aligned_cols=83  Identities=20%  Similarity=0.180  Sum_probs=53.5

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCC-EEEEEecCCC-----CC--CC---chHHHHHHhcCCCcEEEEeecCCCCCCCC
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGAD-VVEIRLDCIN-----NF--QP---GKDLEIILTKKPLPVLIVYRPKWAGGLYE   81 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D-~vElRlD~l~-----~~--~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~   81 (403)
                      +.++|.+.+.++...-++...+.++| +||+=+=+=.     .+  ++   .+.+..+++..++|+++-+|..       
T Consensus       131 vivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~-------  203 (345)
T 3oix_A          131 HFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPY-------  203 (345)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC-------
T ss_pred             EEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCC-------
Confidence            56899999999998877776556766 9999875411     01  11   1233344455689999999963       


Q ss_pred             CCHHHHHHHHHHHHHcCCcEE
Q 015614           82 GDEHKRLEALHLAEDLGADYV  102 (403)
Q Consensus        82 ~~~~~~~~ll~~~~~~g~~yv  102 (403)
                      .+.++..++++.+-..+++++
T Consensus       204 ~~~~~~a~~~~~aga~~i~~i  224 (345)
T 3oix_A          204 FDIVHFDQAAAIFNXYPLTFV  224 (345)
T ss_dssp             CCHHHHHHHHHHHTTSCCSEE
T ss_pred             CCHHHHHHHHHHhCCCceEEE
Confidence            255666666666655555543

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=86.94  E-value=0.78  Score=45.28  Aligned_cols=37  Identities=30%  Similarity=0.404  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|++++|+
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  148 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPP  148 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3567999999999999999999999999999999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=86.85  E-value=0.38  Score=46.86  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~  401 (403)
                      .|++++|+|+|+.+.+++..++.+|+ +|+++.++.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  217 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQA  217 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            47899999999999999998899999 888887764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=86.84  E-value=0.4  Score=45.86  Aligned_cols=37  Identities=27%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      ..+++++|.|+||.+..++..++.+|+ .|.++.++.+
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~  196 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSE  196 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHH
Confidence            358899999999999999998999999 6677776543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=86.82  E-value=0.53  Score=48.06  Aligned_cols=34  Identities=26%  Similarity=0.225  Sum_probs=31.1

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+++|||+|-+|.++++.|++.|.+|+|+.+..
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   76 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   76 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4679999999999999999999999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=86.81  E-value=0.54  Score=48.64  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHC--CCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~--g~~i~v~nR~~  401 (403)
                      ..++++|||+|-+|.++++.|.+.  |.+|+|+.|..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~   71 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGE   71 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCC
Confidence            357899999999999999999988  67999999864

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=86.80  E-value=21  Score=33.68  Aligned_cols=144  Identities=14%  Similarity=0.168  Sum_probs=88.8

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCCchHHH-------HHHhcCCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLE-------IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~-------~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      +.+++++.+++..+.|||+|.+-...-.+    .+..+.+.       .+++..+.|+.+--.              +-+
T Consensus        61 ~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~--------------~~~  126 (297)
T 1tx2_A           61 EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTY--------------KAE  126 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECS--------------CHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEeCC--------------CHH
Confidence            36788888888889999999998866422    22223333       333445778654321              345


Q ss_pred             HHHHHHHcCCcEE-EEeccc-cchHHHHHHhccCCCcEEEEeccCCCCCCC--------HhHHHHHHHHHHHcCCCEEEE
Q 015614           90 ALHLAEDLGADYV-DFELKV-ASNILGKQYSSHQSGTRFIVSCNLDCETPS--------EEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        90 ll~~~~~~g~~yv-DiEl~~-~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~--------~~~l~~~~~~~~~~gadivKi  159 (403)
                      .++++++.|++.| |+-... .++..+.+.   +.+..+|+.+ . .++|.        .+.+.+.++.+.+.|.+-=+|
T Consensus       127 V~~aAl~aGa~iINdvsg~~~d~~m~~~aa---~~g~~vVlmh-~-~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~I  201 (297)
T 1tx2_A          127 VAKQAIEAGAHIINDIWGAKAEPKIAEVAA---HYDVPIILMH-N-RDNMNYRNLMADMIADLYDSIKIAKDAGVRDENI  201 (297)
T ss_dssp             HHHHHHHHTCCEEEETTTTSSCTHHHHHHH---HHTCCEEEEC-C-CSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred             HHHHHHHcCCCEEEECCCCCCCHHHHHHHH---HhCCcEEEEe-C-CCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcE
Confidence            7788888898887 444332 333333222   2456777774 3 56776        255777888888888542235


Q ss_pred             Eee-----cCCHhHHHHHHHHhccC---CCCE
Q 015614          160 VFS-----VNDITEIARIFQLLSHC---QVPI  183 (403)
Q Consensus       160 a~~-----~~~~~D~~~ll~~~~~~---~~p~  183 (403)
                      ..=     ..+.++++.+++-+...   +.|+
T Consensus       202 ilDPg~Gfgk~~~~n~~ll~~l~~l~~lg~Pv  233 (297)
T 1tx2_A          202 ILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPV  233 (297)
T ss_dssp             EEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB
T ss_pred             EEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence            543     46788888888776543   5564

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=86.73  E-value=0.43  Score=48.37  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=32.2

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      -+++.|||+|-++.+++..|++.|.+|++++|+++
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            37899999999999999999999999999999854

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=86.63  E-value=0.32  Score=46.77  Aligned_cols=36  Identities=17%  Similarity=0.089  Sum_probs=31.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHC--CCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~--g~~i~v~nR~~~  402 (403)
                      .|++++|+|+|+.+.+++..++.+  |++|+.+.++.+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~  207 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKK  207 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence            688999999999999999888888  999888887643

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=86.60  E-value=0.34  Score=49.01  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=31.9

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      -+++.|||+|-+|.+++..|++.|.+|++++|+++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46899999999999999999999999999999753

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=86.56  E-value=0.34  Score=47.66  Aligned_cols=36  Identities=39%  Similarity=0.495  Sum_probs=31.4

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .|++++|+|+|+.+.+++..++..|+ +|+.+.|+.+
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  221 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPE  221 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence            57899999999999999988888899 8999887643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=86.50  E-value=0.62  Score=47.00  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ...++|||+|.++.+++..|++.|.+|+|+.+.
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~   57 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKR   57 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            467999999999999999999999999999974

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=86.42  E-value=22  Score=33.37  Aligned_cols=144  Identities=13%  Similarity=0.195  Sum_probs=90.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCC----CCchHH-------HHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNF----QPGKDL-------EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~----~~~~~l-------~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      +.+++++.+.+..+.|||+|.+-...-.+-    +..+++       +.+++..+.|+-+-  |            .+-+
T Consensus        36 ~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSID--T------------~~~~  101 (282)
T 1aj0_A           36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVD--T------------SKPE  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE--C------------CCHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEe--C------------CCHH
Confidence            468888888888899999999988765322    112233       33334446775433  2            1335


Q ss_pred             HHHHHHHcCCcEE-EEeccccchHHHHHHhccCCCcEEEEeccCCCCCCC---------------HhHHHHHHHHHHHcC
Q 015614           90 ALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPS---------------EEDLGYLVSRMQATG  153 (403)
Q Consensus        90 ll~~~~~~g~~yv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~---------------~~~l~~~~~~~~~~g  153 (403)
                      .++++++.|++.| |+-....++.++...   +.+..+|+.+ . .++|.               .+.+.+.++++.+.|
T Consensus       102 va~aAl~aGa~iINdvsg~~d~~~~~~~a---~~~~~vVlmh-~-~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~G  176 (282)
T 1aj0_A          102 VIRESAKVGAHIINDIRSLSEPGALEAAA---ETGLPVCLMH-M-QGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAG  176 (282)
T ss_dssp             HHHHHHHTTCCEEEETTTTCSTTHHHHHH---HHTCCEEEEC-C-SSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEECCCCCCHHHHHHHH---HhCCeEEEEc-c-CCCCccccccCccchHHHHHHHHHHHHHHHHHHcC
Confidence            7788999998887 555433444443222   2466777774 3 45554               456788888899888


Q ss_pred             CCEEEEEe-----ecCCHhHHHHHHHHhccC---CCCE
Q 015614          154 ADIIKLVF-----SVNDITEIARIFQLLSHC---QVPI  183 (403)
Q Consensus       154 adivKia~-----~~~~~~D~~~ll~~~~~~---~~p~  183 (403)
                      .+-=+|..     +..+.++++.+++-+...   +.|+
T Consensus       177 i~~~~IilDPg~gf~k~~~~n~~ll~~l~~~~~~g~P~  214 (282)
T 1aj0_A          177 IAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPL  214 (282)
T ss_dssp             CCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB
T ss_pred             CChhhEEEeCCCCcccCHHHHHHHHHHHHHHhcCCCCE
Confidence            53113443     356788898888876543   5564

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=86.34  E-value=0.45  Score=49.26  Aligned_cols=33  Identities=15%  Similarity=0.132  Sum_probs=30.4

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +.++|+|+|.+|.++++.|++.|.+|.|+.|..
T Consensus       108 ~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~  140 (549)
T 3nlc_A          108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK  140 (549)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence            679999999999999999999999999998763

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=86.32  E-value=0.35  Score=46.75  Aligned_cols=36  Identities=25%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             CCCeEEEE-cchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLA-GAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lil-GaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+++++|. |+||.+.+++..++..|++|+++.|+.+
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  203 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTG  203 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            57899999 5799999999999999999999888753

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=86.30  E-value=0.63  Score=43.23  Aligned_cols=36  Identities=19%  Similarity=0.373  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++++|+|+|..|--++..|.++|.+|+|+.|..
T Consensus       150 ~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          150 FRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            357899999999999999999999999999998754

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=86.29  E-value=0.7  Score=45.97  Aligned_cols=63  Identities=17%  Similarity=0.134  Sum_probs=45.7

Q ss_pred             EEEEeccHHHHHHHHHHHH---HhcCcCCCCCcCCCCCCCCeEEEEcc-hhHHHHHHHHHHH-CCCeEEEEecCCC
Q 015614          332 LIGYNTDCEASITAIEDAI---KERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKS-RGARVVIFDIDFG  402 (403)
Q Consensus       332 l~G~NTD~~G~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~lilGa-GGaarai~~al~~-~g~~i~v~nR~~~  402 (403)
                      ++..|+--.|-.+..++..   +..++        ....+|.+||.|+ +|.++|++.+|++ .|++|.+++|+.+
T Consensus        16 ~~~~~~hp~gc~~~v~~qi~~~~~~~~--------~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~   83 (405)
T 3zu3_A           16 FICVTAHPTGCEANVKKQIDYVTTEGP--------IANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERP   83 (405)
T ss_dssp             TEECCCCHHHHHHHHHHHHHHHHHHCC--------CTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             eeecCCCCHHHHHHHHHHHHHHHhcCC--------cCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCch
Confidence            5666777788777665432   21121        2234789999985 7999999999999 9999998888643

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=86.24  E-value=1  Score=44.83  Aligned_cols=39  Identities=28%  Similarity=0.368  Sum_probs=35.6

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.||++.|+|-|-.|++++..|..+|++|+.++|+.+
T Consensus       141 ~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~  179 (404)
T 1sc6_A          141 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK  179 (404)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            457899999999999999999999999999999999754

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=86.19  E-value=0.56  Score=50.69  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      ++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus       410 ~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d  444 (805)
T 2nvu_B          410 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD  444 (805)
T ss_dssp             HTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence            46799999999999999999999999 99999875

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=86.14  E-value=0.44  Score=47.02  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      ..|.+++|+|+|+.+.+++..++.+|+ +|+.+.++.+
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  249 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEV  249 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            357899999999999999998889999 8988877643

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=86.09  E-value=0.65  Score=42.66  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=28.8

Q ss_pred             CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEE-ecC
Q 015614          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DID  400 (403)
Q Consensus       365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~-nR~  400 (403)
                      .+.+|+++|.|+ ||.|++++..|.+.|++|++. .|+
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~   60 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRD   60 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence            466899999985 889999999999999987654 454

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=86.06  E-value=0.37  Score=47.09  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=31.7

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..++.|||+|..|.+++..|++.|.+|++++|+++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            35799999999999999999999999999999753

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=86.05  E-value=1  Score=42.71  Aligned_cols=86  Identities=15%  Similarity=0.186  Sum_probs=61.7

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCC---EEEEEecC--CCC---C--CC---chHHHHHHhcCCCcEEEEeecCCCCCC
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGAD---VVEIRLDC--INN---F--QP---GKDLEIILTKKPLPVLIVYRPKWAGGL   79 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D---~vElRlD~--l~~---~--~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~   79 (403)
                      +.+.|.+.+.+++..-++.+.+.|+|   +||+-+-+  .+.   .  ++   .+.++.+++..++|+++-++..     
T Consensus        96 ~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~-----  170 (314)
T 2e6f_A           96 LFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY-----  170 (314)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC-----
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC-----
Confidence            56888899999998888888778899   99996631  100   0  11   1345556666689999888743     


Q ss_pred             CCCCHHHHHHHHHHHHHcC-CcEEEEe
Q 015614           80 YEGDEHKRLEALHLAEDLG-ADYVDFE  105 (403)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g-~~yvDiE  105 (403)
                        .+.++..++.+.+.+.| +++|++-
T Consensus       171 --~~~~~~~~~a~~~~~aG~~d~i~v~  195 (314)
T 2e6f_A          171 --FDIAHFDTAAAVLNEFPLVKFVTCV  195 (314)
T ss_dssp             --CCHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred             --CCHHHHHHHHHHHHhcCCceEEEEe
Confidence              25667777788889999 9999864

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=86.04  E-value=5.2  Score=37.90  Aligned_cols=130  Identities=15%  Similarity=0.120  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH-hcCCCcEEEEeecCCC-CCCCCCCHHHHHHHHHHHHHcCC
Q 015614           22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL-TKKPLPVLIVYRPKWA-GGLYEGDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        22 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~-~~~~~PiI~T~R~~~e-GG~~~~~~~~~~~ll~~~~~~g~   99 (403)
                      ++++...+... ..|+|+|=+-.        . .+.... ...+.|+|+.+-.... ...  ..++.-.--.+.+++.|+
T Consensus        72 l~~~~~~i~~l-~~g~dav~~~~--------G-~~~~~~~~~~~~~lil~l~~~t~~~~~--~~~~~l~~~ve~Av~~GA  139 (295)
T 3glc_A           72 LERIDINIAPL-FEHADVLMCTR--------G-ILRSVVPPATNRPVVLRASGANSILAE--LSNEAVALSMDDAVRLNS  139 (295)
T ss_dssp             CTTHHHHTGGG-GGGCSEEEECH--------H-HHHHHSCGGGCCCEEEECEECCCTTSC--TTCCEECSCHHHHHHTTC
T ss_pred             hhhhHHHHHHh-hcCCCEEEECH--------h-HHhhhccccCCccEEEEEcCCCcCCCC--CccchhHHHHHHHHHCCC
Confidence            44444444333 34688887621        1 222222 2247899987763321 111  111111112567889999


Q ss_pred             cEEEEeccccc----hHHH---HHH-hccCCCcEEEEeccCCCCCCCHhH-HHHHHHHHHHcCCCEEEEEeec
Q 015614          100 DYVDFELKVAS----NILG---KQY-SSHQSGTRFIVSCNLDCETPSEED-LGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus       100 ~yvDiEl~~~~----~~~~---~l~-~~~~~~~kiI~S~H~f~~tp~~~~-l~~~~~~~~~~gadivKia~~~  163 (403)
                      +.|++-+...+    +.++   ++. ..++.+.++|+-++.-......++ +....+.+.++|||+||.-.+.
T Consensus       140 daV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t~  212 (295)
T 3glc_A          140 CAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVE  212 (295)
T ss_dssp             SEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECCT
T ss_pred             CEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCCH
Confidence            99999877543    1222   333 344567888886543111112234 4556677889999999998653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=86.01  E-value=0.65  Score=43.39  Aligned_cols=36  Identities=11%  Similarity=0.087  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+|+++|+|+|-.|--.+..|.++|.+|+|+.|..
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  178 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD  178 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc
Confidence            347899999999999999999999999999998753

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=85.98  E-value=5  Score=39.10  Aligned_cols=120  Identities=20%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCch---HHHHHHhcCCCcEEEEeecCCCCCCCCCCHH
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIILTKKPLPVLIVYRPKWAGGLYEGDEH   85 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~   85 (403)
                      +-|.+..|...-+..++...+.  ..-|..++.      ...++.+   .+..+++...+|+.+.+-..      +    
T Consensus        45 ~~Pii~apM~~vt~~~lA~avA--~~GGlgii~------~~~s~e~~~~~I~~vk~~~~~pvga~ig~~------~----  106 (361)
T 3khj_A           45 KIPLISSAMDTVTEHLMAVGMA--RLGGIGIIH------KNMDMESQVNEVLKVKNSGGLRVGAAIGVN------E----  106 (361)
T ss_dssp             SSSEEECSSTTTCSHHHHHHHH--HTTCEEEEC------SSSCHHHHHHHHHHHHHTTCCCCEEEECTT------C----
T ss_pred             CCCEEeecCCCCCcHHHHHHHH--HcCCCeEEe------cCCCHHHHHHHHHHHHhccCceEEEEeCCC------H----
Confidence            3477777776655555554332  345666665      1223322   34444455678888776431      1    


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccccc--h---HHHHHHhccCCCcEEEE-eccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           86 KRLEALHLAEDLGADYVDFELKVAS--N---ILGKQYSSHQSGTRFIV-SCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        86 ~~~~ll~~~~~~g~~yvDiEl~~~~--~---~~~~l~~~~~~~~kiI~-S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                        .+.++.+++.|+++|.|+.....  .   .++.++..  -+..+|+ ..+    |  .+    ..+++.+.|+|.+|+
T Consensus       107 --~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~--~~~~Vivg~v~----t--~e----~A~~l~~aGaD~I~V  172 (361)
T 3khj_A          107 --IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK--MNIDVIVGNVV----T--EE----ATKELIENGADGIKV  172 (361)
T ss_dssp             --HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHH--CCCEEEEEEEC----S--HH----HHHHHHHTTCSEEEE
T ss_pred             --HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHh--cCCcEEEccCC----C--HH----HHHHHHHcCcCEEEE
Confidence              44566778889999988765532  2   22333322  2678886 432    2  22    345666789999998


Q ss_pred             E
Q 015614          160 V  160 (403)
Q Consensus       160 a  160 (403)
                      -
T Consensus       173 G  173 (361)
T 3khj_A          173 G  173 (361)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=85.93  E-value=11  Score=35.60  Aligned_cols=142  Identities=18%  Similarity=0.246  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCCchHHHH-------HHhcCCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEI-------ILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~~-------l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      +.+++++..++..+.|||+|.+-...-.+    .+..+++.+       +++. +.|+-+  -|            .+-+
T Consensus        50 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~-~vpiSI--DT------------~~~~  114 (294)
T 2dqw_A           50 DPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL-GVPVSV--DT------------RKPE  114 (294)
T ss_dssp             ---CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTT-CSCEEE--EC------------SCHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC-CCeEEE--EC------------CCHH
Confidence            34556777777788999999998865432    222233333       3322 666543  22            2346


Q ss_pred             HHHHHHHcCCcEE-EEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCH---------------hHHHHHHHHHHHcC
Q 015614           90 ALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE---------------EDLGYLVSRMQATG  153 (403)
Q Consensus        90 ll~~~~~~g~~yv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~---------------~~l~~~~~~~~~~g  153 (403)
                      .++++++.|++.| ||-....++.++ +..  +.+..+|+.+. .+++|..               +.+.+.++++.+.|
T Consensus       115 Va~aAl~aGa~iINdVsg~~d~~m~~-v~a--~~~~~vVlmh~-~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~G  190 (294)
T 2dqw_A          115 VAEEALKLGAHLLNDVTGLRDERMVA-LAA--RHGVAAVVMHM-PVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAG  190 (294)
T ss_dssp             HHHHHHHHTCSEEECSSCSCCHHHHH-HHH--HHTCEEEEECC-SSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCEEEECCCCCChHHHH-HHH--HhCCCEEEEcC-CCCCCccccccCccccHHHHHHHHHHHHHHHHHHCC
Confidence            7888999999887 554443333333 322  34677888743 2156642               34677788899999


Q ss_pred             CCEEEEEeec-----CCHhHHHHHHHHhcc---CCCCE
Q 015614          154 ADIIKLVFSV-----NDITEIARIFQLLSH---CQVPI  183 (403)
Q Consensus       154 adivKia~~~-----~~~~D~~~ll~~~~~---~~~p~  183 (403)
                      .+  +|..=|     .+.++++.+++-+..   .+.|+
T Consensus       191 i~--~IilDPG~Gf~kt~~~n~~ll~~l~~~~~~g~Pv  226 (294)
T 2dqw_A          191 VP--QVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPV  226 (294)
T ss_dssp             CS--CEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCB
T ss_pred             CC--cEEEcCCCCcccCHHHHHHHHHHHHHHhcCCCCE
Confidence            77  887654     567888888776543   45664

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=85.93  E-value=1.9  Score=42.94  Aligned_cols=53  Identities=19%  Similarity=0.167  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHH-CCCeEE-EEecC
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGARVV-IFDID  400 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~-~g~~i~-v~nR~  400 (403)
                      +.|.+.++++.+.+.+         .++++++++|.|.|.+|+.++.-|.+ +|++|. |.+++
T Consensus       189 g~Gv~~~~~~~~~~~g---------~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~  243 (415)
T 2tmg_A          189 GRGVKVCAGLAMDVLG---------IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR  243 (415)
T ss_dssp             HHHHHHHHHHHHHHTT---------CCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             HHHHHHHHHHHHHHcC---------CCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence            4688888888776433         46789999999999999999999998 999654 77653

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=85.93  E-value=0.33  Score=47.11  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=31.1

Q ss_pred             CCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .|++++|.| +||.+.+++..++..|++|+++.|+.
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~  198 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD  198 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCH
Confidence            578999999 69999999999999999998888864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=85.92  E-value=0.37  Score=46.44  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=31.5

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .|++++|+|+|+.+.+++..++..|+ +|+++.++.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  202 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH  202 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            47899999999999999998888999 8999887643

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=85.91  E-value=0.65  Score=47.89  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=31.0

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      ++.+|+|+|+||.|-.++..|+..|+ +|+|++.+
T Consensus        31 ~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D   65 (531)
T 1tt5_A           31 ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   65 (531)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCC
T ss_pred             hcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35789999999999999999999999 99999864

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=85.88  E-value=0.61  Score=42.98  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=29.3

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEE-ecC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DID  400 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~-nR~  400 (403)
                      .++|.++|.|+ ||.|++++..|.+.|++|.+. .|+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~   60 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAAN   60 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            35788999985 889999999999999988776 554

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=85.78  E-value=0.96  Score=44.62  Aligned_cols=37  Identities=24%  Similarity=0.367  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..+.|+++.|+|.|..|++++..|...|++|.+++|+
T Consensus       115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~  151 (381)
T 3oet_A          115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPP  151 (381)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCC
Confidence            4578999999999999999999999999999999874

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=85.73  E-value=19  Score=32.19  Aligned_cols=76  Identities=21%  Similarity=0.149  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCC----CCCCchHHHHHHhcCCCcEE-EEeecCCCCCCCC-CCH---HHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCIN----NFQPGKDLEIILTKKPLPVL-IVYRPKWAGGLYE-GDE---HKRLEAL   91 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~~~~~~PiI-~T~R~~~eGG~~~-~~~---~~~~~ll   91 (403)
                      +.++.++.+   .+.|.|.||++.+...    .....+++..+.+..++.+. ++.-..     +. .++   +.-.+.+
T Consensus        20 ~~~~~l~~~---~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~-----~~~~~~~~~~~~~~~i   91 (272)
T 2q02_A           20 SIEAFFRLV---KRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYP-----FNQLTEEVVKKTEGLL   91 (272)
T ss_dssp             CHHHHHHHH---HHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETT-----TTSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHH---HHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhhc-----cCCcHHHHHHHHHHHH
Confidence            566666544   4679999999987542    11223456666666777763 332111     11 122   2334556


Q ss_pred             HHHHHcCCcEEEE
Q 015614           92 HLAEDLGADYVDF  104 (403)
Q Consensus        92 ~~~~~~g~~yvDi  104 (403)
                      +.|.++|+.+|=+
T Consensus        92 ~~a~~lG~~~v~~  104 (272)
T 2q02_A           92 RDAQGVGARALVL  104 (272)
T ss_dssp             HHHHHHTCSEEEE
T ss_pred             HHHHHhCCCEEEE
Confidence            6777888888766

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=85.72  E-value=12  Score=35.65  Aligned_cols=151  Identities=13%  Similarity=0.090  Sum_probs=87.6

Q ss_pred             CCeeEEEecccCCHHHHHHHHHHHHhcCC-CEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH
Q 015614            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGA-DVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (403)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~-D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (403)
                      ..|.|+.|..+-+-.++...+.+   .|+ ++++.+.  +......+.+..+++.++.|+.+.+-..      +.   .+
T Consensus        12 ~~Pii~apM~g~s~~~la~av~~---aG~lG~i~~~~--~~~~~~~~~i~~i~~~~~~p~gvnl~~~------~~---~~   77 (332)
T 2z6i_A           12 DYPIFQGGMAWVADGDLAGAVSK---AGGLGIIGGGN--APKEVVKANIDKIKSLTDKPFGVNIMLL------SP---FV   77 (332)
T ss_dssp             SSSEEECCCTTTCCHHHHHHHHH---HTSBEEEECTT--CCHHHHHHHHHHHHHHCCSCEEEEECTT------ST---TH
T ss_pred             CCCEEeCCCCCCCcHHHHHHHHh---CCCcEEeCCCC--CCHHHHHHHHHHHHHhcCCCEEEEecCC------CC---CH
Confidence            34777778776665666554443   354 7887541  1110012344556665677887765431      11   13


Q ss_pred             HHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec----
Q 015614           88 LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV----  163 (403)
Q Consensus        88 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~----  163 (403)
                      -+.++.+.+.|++.|.+-...+.+..+.++.   .+.+++.+.+.      .+    ...++.+.|+|.+.+-...    
T Consensus        78 ~~~~~~a~~~g~d~V~~~~g~p~~~i~~l~~---~g~~v~~~v~~------~~----~a~~~~~~GaD~i~v~g~~~GG~  144 (332)
T 2z6i_A           78 EDIVDLVIEEGVKVVTTGAGNPSKYMERFHE---AGIIVIPVVPS------VA----LAKRMEKIGADAVIAEGMEAGGH  144 (332)
T ss_dssp             HHHHHHHHHTTCSEEEECSSCGGGTHHHHHH---TTCEEEEEESS------HH----HHHHHHHTTCSCEEEECTTSSEE
T ss_pred             HHHHHHHHHCCCCEEEECCCChHHHHHHHHH---cCCeEEEEeCC------HH----HHHHHHHcCCCEEEEECCCCCCC
Confidence            4566778889999999887777777666653   46788877632      22    2455667899999985321    


Q ss_pred             -CCHhHHHHHHHHhccCCCCEEEE
Q 015614          164 -NDITEIARIFQLLSHCQVPIIAY  186 (403)
Q Consensus       164 -~~~~D~~~ll~~~~~~~~p~i~~  186 (403)
                       ....+...+-++....++|+|+-
T Consensus       145 ~g~~~~~~ll~~i~~~~~iPViaa  168 (332)
T 2z6i_A          145 IGKLTTMTLVRQVATAISIPVIAA  168 (332)
T ss_dssp             CCSSCHHHHHHHHHHHCSSCEEEE
T ss_pred             CCCccHHHHHHHHHHhcCCCEEEE
Confidence             11223322223333457898764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=85.70  E-value=0.74  Score=46.37  Aligned_cols=33  Identities=27%  Similarity=0.237  Sum_probs=30.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ...++|||+|-++.+++..|++.|.+|.|+.+.
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            357999999999999999999999999999884

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=85.66  E-value=0.9  Score=45.44  Aligned_cols=54  Identities=17%  Similarity=0.256  Sum_probs=43.4

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEecC
Q 015614          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID  400 (403)
Q Consensus       338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR~  400 (403)
                      -+.|....++..+.+.+         .++++++++|.|.|.+|+.++.-|.++|++|. |.+++
T Consensus       191 Tg~Gv~~~~~~~~~~~g---------~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~  245 (421)
T 2yfq_A          191 TGFGVAVVVRESAKRFG---------IKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWD  245 (421)
T ss_dssp             HHHHHHHHHHHHHHHTT---------CCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCC
T ss_pred             hHHHHHHHHHHHHHhcC---------CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecC
Confidence            35688888888776433         45789999999999999999999999999654 76665

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=85.58  E-value=0.96  Score=46.05  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=31.6

Q ss_pred             CCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ++++||.|| |..|++++..|.+.|.+|+++.|+.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~  182 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEP  182 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            679999995 88899999999999999999999864

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=85.52  E-value=0.41  Score=46.46  Aligned_cols=36  Identities=33%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .+++++|+|+|+.+.+++..++.+|+ +|+.+.++.+
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~  226 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES  226 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence            57899999999999999988888999 7888887643

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=85.49  E-value=5.4  Score=38.47  Aligned_cols=87  Identities=20%  Similarity=0.301  Sum_probs=55.4

Q ss_pred             ecccCCHHHHHHH----HHHHHhcCCCEEEEEecC-------CCC---C-CC-------------chHHHHHHhcCCCcE
Q 015614           16 PLMAQSVEQVLSN----MYQAKAEGADVVEIRLDC-------INN---F-QP-------------GKDLEIILTKKPLPV   67 (403)
Q Consensus        16 ~l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~-------l~~---~-~~-------------~~~l~~l~~~~~~Pi   67 (403)
                      .++..++++++.+    ++.+.+.|.|.|||-.-+       |.+   . .+             .+.++.+|+..+.|+
T Consensus       133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv  212 (340)
T 3gr7_A          133 EMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPL  212 (340)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCE
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCce
Confidence            3455555554444    444567899999998763       111   1 11             134556666678888


Q ss_pred             EEEeecC--CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614           68 LIVYRPK--WAGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (403)
Q Consensus        68 I~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiE  105 (403)
                      .+-++..  .+||.   +.++..++.+.+.+.|++||++-
T Consensus       213 ~vRls~~~~~~~g~---~~~~~~~la~~L~~~Gvd~i~vs  249 (340)
T 3gr7_A          213 FVRISASDYHPDGL---TAKDYVPYAKRMKEQGVDLVDVS  249 (340)
T ss_dssp             EEEEESCCCSTTSC---CGGGHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEeccccccCCCC---CHHHHHHHHHHHHHcCCCEEEEe
Confidence            7766653  22342   34677888899999999999985

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=85.46  E-value=0.59  Score=44.33  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=28.5

Q ss_pred             CeEEEEcchhHHHHHHHHHHH--CCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKS--RGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~--~g~~i~v~nR~~  401 (403)
                      ..|+|||+|.++.++++.|++  .|.+|+|+.|..
T Consensus        66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~  100 (326)
T 3fpz_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            469999999999999999974  588999998753

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=85.45  E-value=0.77  Score=45.88  Aligned_cols=37  Identities=19%  Similarity=0.287  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcc-hhHHHH--HHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGA-GGAGRA--LAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGa-GGaara--i~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+|.++|.|+ +|.|+|  ++.++.+.|++|+++.|+.+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~   97 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETG   97 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcc
Confidence            56899999995 788999  88888888999999998643

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.27  E-value=1.2  Score=44.48  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.||++.|+|-|-.|++++..|..+|++|+.++|+.
T Consensus       152 ~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~  189 (416)
T 3k5p_A          152 REVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSD  189 (416)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             ccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcc
Confidence            45789999999999999999999999999999999874

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=85.19  E-value=0.59  Score=44.45  Aligned_cols=34  Identities=26%  Similarity=0.282  Sum_probs=29.9

Q ss_pred             eEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          370 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       370 ~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      +++|.|+ ||.+.+++..++..|++|+++.|+.+|
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~  187 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA  187 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            7999997 999999999888899998888887654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=85.11  E-value=0.51  Score=46.12  Aligned_cols=36  Identities=33%  Similarity=0.378  Sum_probs=31.5

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .|++++|+|+||.+.+++..++.+|+ +|+++.|+.+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  231 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN  231 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHH
Confidence            47899999999999999998889995 9999887643

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=85.03  E-value=3.8  Score=37.53  Aligned_cols=105  Identities=10%  Similarity=0.061  Sum_probs=67.4

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEe-cC--CCCCCC-chHHHHHHhcC--CCcEEEEeecCCCCCCCCCCHH
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DC--INNFQP-GKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEH   85 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl-D~--l~~~~~-~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~   85 (403)
                      +|+-+|..-|...+..+++.+.+.|+|.+++++ |-  .+.++. ...++.+|+.+  +.++++.            +.+
T Consensus        15 ~i~psila~D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~~~~DvhLMv~------------~p~   82 (237)
T 3cu2_A           15 KLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFPTHCFKDVHLMVR------------NQL   82 (237)
T ss_dssp             CEEEEGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTTSEEEEEEECS------------CHH
T ss_pred             eEEEeeeeCCcccHHHHHHHHHHcCCCEEEEEEecCccccchhhhHHHHHHHhhhCCCCeEEEEE------------CHH
Confidence            489999999988888888888888999999987 42  122221 14566666544  2233211            223


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCC---------CcEEEEecc
Q 015614           86 KRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQS---------GTRFIVSCN  131 (403)
Q Consensus        86 ~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~---------~~kiI~S~H  131 (403)
                         .+++.+++.|+++|-+=....+...+.+...+..         +.++.++..
T Consensus        83 ---~~i~~~~~aGAd~itvH~ea~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~  134 (237)
T 3cu2_A           83 ---EVAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACLC  134 (237)
T ss_dssp             ---HHHHHHHHTTCSEEEEETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEEC
T ss_pred             ---HHHHHHHHcCCCEEEEecCCcccHHHHHHHHHhcccccccccCCceEEEEEe
Confidence               3566778899999777665554433333344455         678888873

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=84.86  E-value=0.58  Score=44.75  Aligned_cols=36  Identities=36%  Similarity=0.405  Sum_probs=29.4

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCC-CeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g-~~i~v~nR~~~  402 (403)
                      .|++++|+|+||.+-.++..++.+| ++|+.+.++.+
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~  199 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQD  199 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHH
Confidence            4789999999999888877777775 59998887654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=84.79  E-value=0.62  Score=44.25  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=30.0

Q ss_pred             eEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          370 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       370 ~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      +++|+|+ ||.+.+++..++..|++|+++.++.+|
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~  186 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE  186 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            7999997 999999999889999998888887654

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=84.77  E-value=0.43  Score=47.68  Aligned_cols=36  Identities=25%  Similarity=0.236  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..|++++|.|+ ||.+.+++..++..|++++++.++.
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~  255 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSA  255 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            35899999998 9999999999999999877777764

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=84.76  E-value=25  Score=32.60  Aligned_cols=143  Identities=13%  Similarity=0.057  Sum_probs=86.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (403)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (403)
                      ..+.+++.+..+++.+.+++.|=+.--+.      .......+.+++++- |+=.=+.|..   +.+.+..=.+.|++.|
T Consensus        55 ~~t~~~I~~lc~eA~~~~~aaVCV~p~~V------~~a~~~L~gs~v~v~-tVigFP~G~~---~~~~Kv~Ea~~Ai~~G  124 (260)
T 3r12_A           55 FATPDDIKKLCLEARENRFHGVCVNPCYV------KLAREELEGTDVKVV-TVVGFPLGAN---ETRTKAHEAIFAVESG  124 (260)
T ss_dssp             TCCHHHHHHHHHHHHHTTCSEEEECGGGH------HHHHHHHTTSCCEEE-EEESTTTCCS---CHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhcCCcEEEECHHHH------HHHHHHhcCCCCeEE-EEecCCCCCC---cHHHHHHHHHHHHHcC
Confidence            34567788878888888888776521111      122233333454444 4333233322   3355665667899999


Q ss_pred             CcEEEEeccccc----------hHHHHHHhc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe----ec
Q 015614           99 ADYVDFELKVAS----------NILGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF----SV  163 (403)
Q Consensus        99 ~~yvDiEl~~~~----------~~~~~l~~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~----~~  163 (403)
                      ++-||+=++...          +.+..+... +....|+|+--...    +.+++....+-+.+.|||+||--+    ..
T Consensus       125 AdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L----t~eei~~A~~ia~eaGADfVKTSTGf~~~G  200 (260)
T 3r12_A          125 ADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYL----DTEEKIAACVISKLAGAHFVKTSTGFGTGG  200 (260)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGC----CHHHHHHHHHHHHHTTCSEEECCCSSSSCC
T ss_pred             CCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCC----CHHHHHHHHHHHHHhCcCEEEcCCCCCCCC
Confidence            999998665421          123334322 22357888765422    467788888888899999999774    23


Q ss_pred             CCHhHHHHHHHH
Q 015614          164 NDITEIARIFQL  175 (403)
Q Consensus       164 ~~~~D~~~ll~~  175 (403)
                      .+.+|+..+.+.
T Consensus       201 AT~edV~lm~~~  212 (260)
T 3r12_A          201 ATAEDVHLMKWI  212 (260)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            467787666654

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=84.71  E-value=9.5  Score=34.91  Aligned_cols=80  Identities=14%  Similarity=0.158  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC--chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH-------HHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR-------LEAL   91 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~-------~~ll   91 (403)
                      ++++.+..+   .+.|.|.||++.+.+...+.  .+.++.+.+..++.+....-..........+++.|       .+.+
T Consensus        18 ~~~~~l~~~---~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i   94 (294)
T 3vni_A           18 DYKYYIEKV---AKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLL   94 (294)
T ss_dssp             CHHHHHHHH---HHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHH---HHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence            466666554   45799999999876544332  23455555667887765221111111122233322       3345


Q ss_pred             HHHHHcCCcEEE
Q 015614           92 HLAEDLGADYVD  103 (403)
Q Consensus        92 ~~~~~~g~~yvD  103 (403)
                      +.+.++|+.+|-
T Consensus        95 ~~a~~lG~~~v~  106 (294)
T 3vni_A           95 KRLYKLDVHLIG  106 (294)
T ss_dssp             HHHHHHTCCEEE
T ss_pred             HHHHHhCCCeee
Confidence            566677777764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=84.66  E-value=0.82  Score=45.85  Aligned_cols=32  Identities=13%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++|||+|-++.++++.|.+.|.+|+|+.++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~   71 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEAR   71 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCC
Confidence            58999999999999999999999999998765

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=84.61  E-value=0.82  Score=48.31  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.2

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ...|+|+|+|.+|.++|.+|++.|++|.|+.++
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~   60 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHN   60 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeec
Confidence            357999999999999999999999999999875

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=84.51  E-value=26  Score=32.71  Aligned_cols=156  Identities=16%  Similarity=0.203  Sum_probs=88.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCCchHHH-------HHHhcCCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLE-------IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~-------~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      +.+++++.+.+..+.|||+|.+-...-.+    .+..+++.       .+++. +.|+-+-  |            .+-+
T Consensus        27 ~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~-~~piSID--T------------~~~~   91 (280)
T 1eye_A           27 DLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ-GITVSID--T------------MRAD   91 (280)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT-TCCEEEE--C------------SCHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC-CCEEEEe--C------------CCHH
Confidence            57888888888899999999998755322    11122333       23332 6665432  2            2346


Q ss_pred             HHHHHHHcCCcEE-EEeccc-cchHHHHHHhccCCCcEEEEeccCCCCCCC----------------HhHHHHHHHHHHH
Q 015614           90 ALHLAEDLGADYV-DFELKV-ASNILGKQYSSHQSGTRFIVSCNLDCETPS----------------EEDLGYLVSRMQA  151 (403)
Q Consensus        90 ll~~~~~~g~~yv-DiEl~~-~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~----------------~~~l~~~~~~~~~  151 (403)
                      .++++++.|++.| ||--.. .++.++...   +.+..+|+.+-  .++|.                .+.+.+.++++.+
T Consensus        92 va~aAl~aGa~iINdvsg~~~d~~m~~~~a---~~~~~vVlmh~--~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~  166 (280)
T 1eye_A           92 VARAALQNGAQMVNDVSGGRADPAMGPLLA---EADVPWVLMHW--RAVSADTPHVPVRYGNVVAEVRADLLASVADAVA  166 (280)
T ss_dssp             HHHHHHHTTCCEEEETTTTSSCTTHHHHHH---HHTCCEEEECC--CCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEECCCCCCCHHHHHHHH---HhCCeEEEEcC--CCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHH
Confidence            7889999998887 554332 334443222   24666777743  33432                3456778888888


Q ss_pred             cCCCEEEEEe-----ecCCHhHHHHHHHHhcc---CCCCEEEEEcCccchhhhh
Q 015614          152 TGADIIKLVF-----SVNDITEIARIFQLLSH---CQVPIIAYSVGERGLVSQL  197 (403)
Q Consensus       152 ~gadivKia~-----~~~~~~D~~~ll~~~~~---~~~p~i~~~MG~~G~~SRi  197 (403)
                      .|.+-=+|..     ...+.++++.+++-+..   .+.|+. ++.+....+..+
T Consensus       167 ~Gi~~~~IilDPg~Gf~k~~~~n~~ll~~l~~~~~~g~Pvl-~G~Srksfi~~~  219 (280)
T 1eye_A          167 AGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVL-VGASRKRFLGAL  219 (280)
T ss_dssp             TTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBE-ECCTTCHHHHHH
T ss_pred             cCCChhhEEEECCCCcccCHHHHHHHHHHHHHhhcCCCCEE-EEecchHHHHhh
Confidence            8853113444     44678888888776543   466653 244333333333

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=84.50  E-value=0.59  Score=44.91  Aligned_cols=36  Identities=31%  Similarity=0.437  Sum_probs=31.3

Q ss_pred             CCCeEEEE-cchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLA-GAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lil-GaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|. |+|+.+.+++..++..|++|+++.++.+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~  186 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNE  186 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            47899999 6899999999999999999998888643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=84.49  E-value=0.61  Score=47.53  Aligned_cols=33  Identities=12%  Similarity=0.116  Sum_probs=29.8

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .++++|||+|-+|-+++..|.+.+++|+|++++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~   74 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPR   74 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCC
Confidence            468999999999999999998888999999986

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=84.44  E-value=8  Score=34.83  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=61.6

Q ss_pred             CCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCH
Q 015614            6 ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDE   84 (403)
Q Consensus         6 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~   84 (403)
                      |++.+|.+|+.+-.++.++.+..+++. ...++.+++=..++....+ +.+..|++.. +.++++=+... +     . .
T Consensus         1 ~~~~~~~livAlD~~~~~~a~~~~~~~-~~~~~~ikvg~~lf~~~G~-~~v~~l~~~~p~~~iflDlKl~-D-----i-p   71 (221)
T 3exr_A            1 MTKQLPNLQVALDHSNLKGAITAAVSV-GNEVDVIEAGTVCLLQVGS-ELVEVLRSLFPDKIIVADTKCA-D-----A-G   71 (221)
T ss_dssp             --CCCCEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHHHHCT-HHHHHHHHHCTTSEEEEEEEEC-S-----C-H
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHhh-CCCceEEEECHHHHHhcCH-HHHHHHHHhCCCCcEEEEEEee-c-----c-H
Confidence            678889999999999999999888775 4458999997776643333 3567777654 56777766643 2     1 2


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecccc
Q 015614           85 HKRLEALHLAEDLGADYVDFELKVA  109 (403)
Q Consensus        85 ~~~~~ll~~~~~~g~~yvDiEl~~~  109 (403)
                      +-..   +.+.++|++++-+-....
T Consensus        72 ~t~~---~~~~~~Gad~vtVH~~~g   93 (221)
T 3exr_A           72 GTVA---KNNAVRGADWMTCICSAT   93 (221)
T ss_dssp             HHHH---HHHHTTTCSEEEEETTSC
T ss_pred             HHHH---HHHHHcCCCEEEEeccCC
Confidence            2222   235778888877755443

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=84.43  E-value=1  Score=47.55  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++++|+|+|-++.++++.|.+.|.+|+|+.+.
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~  139 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR  139 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            4689999999999999999999999999999875

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=84.43  E-value=1  Score=46.41  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ...+|+++|||+|-+|--++.+|++.|.+|+++.|++.
T Consensus       175 ~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          175 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            45689999999999999999999999989999999753

>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}

Probab=84.41  E-value=29  Score=33.03  Aligned_cols=159  Identities=13%  Similarity=0.165  Sum_probs=97.1

Q ss_pred             eeEEEecccC------------CHHHHHHHHHHHHhcCCCEEEEEecC-CCCC---CC---chHHHHHHhcCCCcEEEEe
Q 015614           11 TMICAPLMAQ------------SVEQVLSNMYQAKAEGADVVEIRLDC-INNF---QP---GKDLEIILTKKPLPVLIVY   71 (403)
Q Consensus        11 ~~icv~l~~~------------~~~e~~~~~~~~~~~~~D~vElRlD~-l~~~---~~---~~~l~~l~~~~~~PiI~T~   71 (403)
                      ..|++.+++.            |.+|+..+..++.+.||-++=+.+-- -...   ++   .+.+..+|+.++..|.+| 
T Consensus         8 vIIt~A~tGa~~t~~~~P~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~T-   86 (311)
T 3e49_A            8 VIITCAVTGAIHTPSMSPYLPVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLT-   86 (311)
T ss_dssp             BCEEEECSCSSSCGGGCTTSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCCEEEEC-
T ss_pred             EEEEEcCCCCcCCcccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEEC-
Confidence            4567677752            45889999889999999999987764 2211   11   356677877665544344 


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccch---------------HHHHHHhccCCCcEEEEeccCCCCC
Q 015614           72 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN---------------ILGKQYSSHQSGTRFIVSCNLDCET  136 (403)
Q Consensus        72 R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~---------------~~~~l~~~~~~~~kiI~S~H~f~~t  136 (403)
                       +   ||....+.++|++.+..   +.+|..-++.....-               +-+..+..  ....+      |.+|
T Consensus        87 -T---gg~~~~~~eerla~~~~---~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~--~~~~v------~~n~  151 (311)
T 3e49_A           87 -T---GGSPHMTVEERLRPATH---YMPELASLNMGSMNFGLYPMLERFKEFAHGWEREHLER--SRDLV------FKNT  151 (311)
T ss_dssp             -S---CSCTTSCHHHHHHHHHH---HCCSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHG--GGGCE------ECCC
T ss_pred             -C---CCCCCCCHHHHHHHHHh---cCCCeeeecCCCcccccccchhhccccccccchhhccc--CCCce------ecCC
Confidence             3   44444678888776543   468998887554210               00011100  00111      2233


Q ss_pred             CCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc--C-CCCEEEEEcCc
Q 015614          137 PSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH--C-QVPIIAYSVGE  190 (403)
Q Consensus       137 p~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~--~-~~p~i~~~MG~  190 (403)
                        .+.+.++++.|.+.|   +|.=...-+..++..+.++..+  . ....+-+.||-
T Consensus       152 --~~~i~~~~~~~~e~G---i~pE~e~fd~g~l~~~~~l~~~Gl~~~p~~~~~vlGv  203 (311)
T 3e49_A          152 --FADIEFILKTCGGNG---TRFEFECYDTSHLYNLAHFVDRKLATPPFFVQTVFGL  203 (311)
T ss_dssp             --HHHHHHHHHHHHTTT---CEEEEEECSHHHHHHHHHHHHTTCSCSSEEEEEEESC
T ss_pred             --HHHHHHHHHHHHHcC---CeeEEEEECHHHHHHHHHHHHcCCCCCCeEEEEEecC
Confidence              467889999999988   4666666688888777777543  1 34466667763

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=84.37  E-value=7.6  Score=34.91  Aligned_cols=146  Identities=14%  Similarity=0.140  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEec-C-CCC-CCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHc
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLD-C-INN-FQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD-~-l~~-~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (403)
                      +..+..+   .+.+.|+|.+.++.. . +.. ... +.++.+++..++|+++.      ||..  +.+ +   ++.+++.
T Consensus        32 d~~~~a~---~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~------ggi~--~~~-~---~~~~l~~   95 (244)
T 2y88_A           32 SAVDAAL---GWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELS------GGIR--DDE-S---LAAALAT   95 (244)
T ss_dssp             EHHHHHH---HHHHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEE------SSCC--SHH-H---HHHHHHT
T ss_pred             CHHHHHH---HHHHcCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEE------CCCC--CHH-H---HHHHHHc
Confidence            5555554   444569999999842 1 222 222 56778888889999984      4442  222 2   4566678


Q ss_pred             CCcEEEEeccccc--hHHHHHHhccCCCcEEE--Eecc-----------CCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015614           98 GADYVDFELKVAS--NILGKQYSSHQSGTRFI--VSCN-----------LDCETPSEEDLGYLVSRMQATGADIIKLVFS  162 (403)
Q Consensus        98 g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI--~S~H-----------~f~~tp~~~~l~~~~~~~~~~gadivKia~~  162 (403)
                      |++.|-+-.....  +.+.++.....  .+++  ++.+           .+...  .++..+..+++.+.|++.+=+-..
T Consensus        96 Gad~V~lg~~~l~~p~~~~~~~~~~g--~~~~~~ld~~~~~~~~~v~~~g~~~~--~~~~~e~~~~~~~~G~~~i~~~~~  171 (244)
T 2y88_A           96 GCARVNVGTAALENPQWCARVIGEHG--DQVAVGLDVQIIDGEHRLRGRGWETD--GGDLWDVLERLDSEGCSRFVVTDI  171 (244)
T ss_dssp             TCSEEEECHHHHHCHHHHHHHHHHHG--GGEEEEEEEEEETTEEEEEEGGGTEE--EEEHHHHHHHHHHTTCCCEEEEET
T ss_pred             CCCEEEECchHhhChHHHHHHHHHcC--CCEEEEEeccccCCCCEEEECCccCC--CCCHHHHHHHHHhCCCCEEEEEec
Confidence            9999887554322  23334432211  2233  2322           11110  114566677778889886633221


Q ss_pred             cC----CHhHHHHHHHHhccCCCCEEEE
Q 015614          163 VN----DITEIARIFQLLSHCQVPIIAY  186 (403)
Q Consensus       163 ~~----~~~D~~~ll~~~~~~~~p~i~~  186 (403)
                      ..    +.-|...+.++....+.|+|+.
T Consensus       172 ~~~~~~~g~~~~~~~~l~~~~~ipvia~  199 (244)
T 2y88_A          172 TKDGTLGGPNLDLLAGVADRTDAPVIAS  199 (244)
T ss_dssp             TTTTTTSCCCHHHHHHHHTTCSSCEEEE
T ss_pred             CCccccCCCCHHHHHHHHHhCCCCEEEE
Confidence            11    1124344444444456777664

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=84.34  E-value=0.93  Score=44.90  Aligned_cols=33  Identities=42%  Similarity=0.544  Sum_probs=30.1

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ...++|+|+|-+|.++++.|++.|.+|.|+.+.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~   61 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRR   61 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEecc
Confidence            468999999999999999999999999999875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=84.33  E-value=0.98  Score=47.62  Aligned_cols=34  Identities=38%  Similarity=0.610  Sum_probs=31.2

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++|+|+|-+|.+++..|.+.|.+|+|+.+..
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~  406 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS  406 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            5789999999999999999999999999999853

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=84.25  E-value=0.69  Score=48.58  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=30.4

Q ss_pred             CeEEEEcchhHHHHHHHHHHH-CCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKS-RGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~-~g~~i~v~nR~~  401 (403)
                      ..|+|+|+|.+|.+++..|++ .|++|.|+.|..
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~   66 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE   66 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999 899999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=84.22  E-value=0.68  Score=48.13  Aligned_cols=33  Identities=30%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             CeEEEEcchhHHHHHHHHHHHC------CCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSR------GARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~------g~~i~v~nR~~  401 (403)
                      ..|+|+|+|.+|.++|..|++.      |.+|.|+.|..
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~   74 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   74 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCC
Confidence            4699999999999999999998      99999998863

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=84.03  E-value=2.3  Score=39.92  Aligned_cols=84  Identities=14%  Similarity=0.214  Sum_probs=56.7

Q ss_pred             eEEEecccCCHHHHHHHHHHHHh-cCCCEEEEEecCCCC--------CCC---chHHHHHHhcCCCcEEEEeecCCCCCC
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKA-EGADVVEIRLDCINN--------FQP---GKDLEIILTKKPLPVLIVYRPKWAGGL   79 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~-~~~D~vElRlD~l~~--------~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~   79 (403)
                      .+.+.|.+.+.+++..-++.+.+ .|+|.||+-+.+-..        .++   .+.++.+++..+.|+++-++...    
T Consensus       100 p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~~----  175 (311)
T 1ep3_A          100 PIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNV----  175 (311)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCS----
T ss_pred             cEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCh----
Confidence            35788888899888877776654 799999996532110        011   24455666666899998887421    


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           80 YEGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                       .    ...++.+.+.+.|+++|++
T Consensus       176 -~----~~~~~a~~l~~~G~d~i~v  195 (311)
T 1ep3_A          176 -T----DIVPIAKAVEAAGADGLTM  195 (311)
T ss_dssp             -S----CSHHHHHHHHHTTCSEEEE
T ss_pred             -H----HHHHHHHHHHHcCCCEEEE
Confidence             1    1234566777889999998

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=84.02  E-value=20  Score=33.07  Aligned_cols=88  Identities=18%  Similarity=0.222  Sum_probs=52.0

Q ss_pred             CCeeEEEecc--cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHHhc-CC
Q 015614            9 NTTMICAPLM--AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTK-KP   64 (403)
Q Consensus         9 ~~~~icv~l~--~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~~~-~~   64 (403)
                      +++.+...|+  .++.++....++...+.|+|+||+-+-+..+.-+                     .+.++.+|+. .+
T Consensus        15 ~~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~   94 (268)
T 1qop_A           15 REGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPT   94 (268)
T ss_dssp             TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSS
T ss_pred             CCceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence            4555555554  4455888888888778899999997755433211                     0346667777 68


Q ss_pred             CcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015614           65 LPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV  102 (403)
Q Consensus        65 ~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv  102 (403)
                      +|+++-.....   .+...-   .++++.+.+.|++.+
T Consensus        95 ~Pv~lm~y~n~---v~~~g~---~~~~~~~~~aGadgi  126 (268)
T 1qop_A           95 IPIGLLMYANL---VFNNGI---DAFYARCEQVGVDSV  126 (268)
T ss_dssp             SCEEEEECHHH---HHTTCH---HHHHHHHHHHTCCEE
T ss_pred             CCEEEEEcccH---HHHhhH---HHHHHHHHHcCCCEE
Confidence            99876422110   000111   245566777777753

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=83.99  E-value=0.79  Score=44.61  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             CeEEEEcchhHHHHHHHHHHHC--CCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~--g~~i~v~nR~~  401 (403)
                      ..++|+|+|.++.++++.|++.  |.+|.|+.+..
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~  114 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV  114 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4699999999999999999987  88999998864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=83.88  E-value=0.8  Score=50.94  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +++++|||+|.+|.++++.|++.|. +|+|+.|.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~  220 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQ  220 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            6789999999999999999999999 79999985

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=83.75  E-value=1  Score=46.53  Aligned_cols=37  Identities=14%  Similarity=0.241  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+.+|+++|||+|-+|--++.+|++.|.+|+++.|++
T Consensus       188 ~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  224 (549)
T 4ap3_A          188 DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA  224 (549)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            4578999999999999999999999998999999986

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=83.72  E-value=16  Score=35.40  Aligned_cols=157  Identities=11%  Similarity=0.100  Sum_probs=97.3

Q ss_pred             ecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614           16 PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (403)
Q Consensus        16 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (403)
                      ++...+.+++...+.++.+.|.|.+++.+-.  .. ...+.++.+|+.. +.|+.+-.    .|| |  +.++-.++++.
T Consensus       142 ~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~--~~~~~~e~v~avr~a~gd~~l~vD~----n~~-~--~~~~a~~~~~~  212 (384)
T 2pgw_A          142 FLQGETAEELARDAAVGHAQGERVFYLKVGR--GEKLDLEITAAVRGEIGDARLRLDA----NEG-W--SVHDAINMCRK  212 (384)
T ss_dssp             ECCCSSHHHHHHHHHHHHHTTCCEEEEECCS--CHHHHHHHHHHHHTTSTTCEEEEEC----TTC-C--CHHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHHHHHcCCCEEEECcCC--CHHHHHHHHHHHHHHcCCcEEEEec----CCC-C--CHHHHHHHHHH
Confidence            3445788999888888888999999998753  11 1124566666655 46655432    233 3  45666778888


Q ss_pred             HHHcCCcEEEEeccccch---HHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee-cCCHhHH
Q 015614           94 AEDLGADYVDFELKVASN---ILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS-VNDITEI  169 (403)
Q Consensus        94 ~~~~g~~yvDiEl~~~~~---~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~-~~~~~D~  169 (403)
                      +-++|++||.  --.+.+   ..+++...  -.+.|++.=..    -+.+++.+.++   .-.+|++-+=.. .-.....
T Consensus       213 l~~~~i~~iE--qP~~~~~~~~~~~l~~~--~~iPI~~de~i----~~~~~~~~~i~---~~~~d~v~ik~~~~GGit~~  281 (384)
T 2pgw_A          213 LEKYDIEFIE--QPTVSWSIPAMAHVREK--VGIPIVADQAA----FTLYDVYEICR---QRAADMICIGPREIGGIQPM  281 (384)
T ss_dssp             HGGGCCSEEE--CCSCTTCHHHHHHHHHH--CSSCEEESTTC----CSHHHHHHHHH---TTCCSEEEECHHHHTSHHHH
T ss_pred             HHhcCCCEEe--CCCChhhHHHHHHHHhh--CCCCEEEeCCc----CCHHHHHHHHH---cCCCCEEEEcchhhCCHHHH
Confidence            8888999965  333322   23344322  35666664322    12334433333   234788877444 3578888


Q ss_pred             HHHHHHhccCCCCEEEEEcCccc
Q 015614          170 ARIFQLLSHCQVPIIAYSVGERG  192 (403)
Q Consensus       170 ~~ll~~~~~~~~p~i~~~MG~~G  192 (403)
                      .++.++....+.++..=+|.+.+
T Consensus       282 ~~i~~~A~~~g~~~~~~~~~es~  304 (384)
T 2pgw_A          282 MKAAAVAEAAGLKICIHSSFTTG  304 (384)
T ss_dssp             HHHHHHHHHTTCCEEECCCSCCH
T ss_pred             HHHHHHHHHCCCeEeeccCcCCH
Confidence            89988888888887666666654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=83.69  E-value=0.64  Score=44.65  Aligned_cols=33  Identities=33%  Similarity=0.501  Sum_probs=29.0

Q ss_pred             CCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecC
Q 015614          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .|++++|+| +||.+.+++..++..|++|+++ ++
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~  183 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-AR  183 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-EC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eC
Confidence            578999999 6999999999999999988777 54

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=83.58  E-value=0.7  Score=45.56  Aligned_cols=37  Identities=22%  Similarity=0.074  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+++++|.|| |+.|++++..|.+.|.+|+++.|+.+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            34679999996 88899999999888889999999764

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=83.55  E-value=0.91  Score=47.82  Aligned_cols=32  Identities=31%  Similarity=0.463  Sum_probs=29.7

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..|+|+|+|.+|.++|.+|++.|++|.|+.+.
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~   59 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLN   59 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEec
Confidence            56999999999999999999999999999875

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=83.43  E-value=0.72  Score=43.66  Aligned_cols=35  Identities=29%  Similarity=0.336  Sum_probs=30.2

Q ss_pred             CCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       368 ~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      ++ ++|.|+ |+.+.+++..++..|++|+.+.++.+|
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~  183 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGREST  183 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            45 999998 999999999999999999988877553

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=83.39  E-value=29  Score=32.30  Aligned_cols=112  Identities=14%  Similarity=0.179  Sum_probs=69.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEec--CCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLD--CINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD--~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (403)
                      +..++.   +.+...||++|=+--|  ++..  ..+.+..+++..++|++   |.  +   |-.++.   + ++.+...|
T Consensus        80 dp~~~A---~~y~~~GA~~IsVltd~~~f~G--s~~~L~~ir~~v~lPVl---~K--d---fi~d~~---q-i~ea~~~G  142 (272)
T 3tsm_A           80 DPPALA---KAYEEGGAACLSVLTDTPSFQG--APEFLTAARQACSLPAL---RK--D---FLFDPY---Q-VYEARSWG  142 (272)
T ss_dssp             CHHHHH---HHHHHTTCSEEEEECCSTTTCC--CHHHHHHHHHTSSSCEE---EE--S---CCCSTH---H-HHHHHHTT
T ss_pred             CHHHHH---HHHHHCCCCEEEEeccccccCC--CHHHHHHHHHhcCCCEE---EC--C---ccCCHH---H-HHHHHHcC
Confidence            444444   4445679999965433  2332  23578888888899998   32  2   212222   1 34567889


Q ss_pred             CcEEEEeccccc-hHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           99 ADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        99 ~~yvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +|.|=+-....+ +.++++. ..+.-+..+++..|+      .+|    ++++.++|+|++=+
T Consensus       143 AD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~------~eE----l~~A~~~ga~iIGi  195 (272)
T 3tsm_A          143 ADCILIIMASVDDDLAKELEDTAFALGMDALIEVHD------EAE----MERALKLSSRLLGV  195 (272)
T ss_dssp             CSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECS------HHH----HHHHTTSCCSEEEE
T ss_pred             CCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCC------HHH----HHHHHhcCCCEEEE
Confidence            999888765433 3445554 334568889999996      233    35666789998844

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=83.31  E-value=0.98  Score=45.49  Aligned_cols=36  Identities=42%  Similarity=0.641  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecC
Q 015614          365 PLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++|+++|-| +||.+++++..|.+.|++|++++|+
T Consensus       210 ~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~  246 (454)
T 3u0b_A          210 PLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVD  246 (454)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECG
T ss_pred             CCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999998 5899999999999999999999886

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=83.27  E-value=25  Score=31.50  Aligned_cols=91  Identities=12%  Similarity=0.064  Sum_probs=57.2

Q ss_pred             CCCeeEEEecccCCH--HHHHHHHHHHHhcCCCEEEEEecCCCCCC-----------------C----chHHHHHHhcCC
Q 015614            8 KNTTMICAPLMAQSV--EQVLSNMYQAKAEGADVVEIRLDCINNFQ-----------------P----GKDLEIILTKKP   64 (403)
Q Consensus         8 ~~~~~icv~l~~~~~--~e~~~~~~~~~~~~~D~vElRlD~l~~~~-----------------~----~~~l~~l~~~~~   64 (403)
                      ++++.++.+|+.-+.  ++....++...+. +|.+|+-+-+-.+.-                 .    .+.++.+++.++
T Consensus         2 ~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~   80 (248)
T 1geq_A            2 FKDGSLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSS   80 (248)
T ss_dssp             CCTTEEEEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCC
Confidence            356677888877776  6888888777677 999998743322111                 0    235566777778


Q ss_pred             CcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614           65 LPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (403)
Q Consensus        65 ~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiE  105 (403)
                      +|+.+-.+...   .+...   ..+.++.+++.|+++|=+-
T Consensus        81 ~pv~~~~~~~~---~~~~~---~~~~~~~~~~~Gad~v~~~  115 (248)
T 1geq_A           81 TPIVLMTYYNP---IYRAG---VRNFLAEAKASGVDGILVV  115 (248)
T ss_dssp             CCEEEEECHHH---HHHHC---HHHHHHHHHHHTCCEEEET
T ss_pred             CCEEEEeccch---hhhcC---HHHHHHHHHHCCCCEEEEC
Confidence            89887543100   00000   1346677888899998885

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=83.24  E-value=0.94  Score=46.90  Aligned_cols=32  Identities=19%  Similarity=0.399  Sum_probs=29.6

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..++|||+|-+|.++++.|++.|.+|.|+.+.
T Consensus        33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~   64 (571)
T 2rgh_A           33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQ   64 (571)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            46999999999999999999999999999875

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=83.11  E-value=0.85  Score=44.01  Aligned_cols=35  Identities=14%  Similarity=0.101  Sum_probs=30.0

Q ss_pred             CCeEEEEcchhHHHHH-HHHH-HHCCCe-EEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRAL-AFGA-KSRGAR-VVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai-~~al-~~~g~~-i~v~nR~~~  402 (403)
                      +++++|+|+|+.+.++ +..+ +.+|++ |+.+.++.+
T Consensus       173 ~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~  210 (357)
T 2b5w_A          173 PSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR  210 (357)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcc
Confidence            3899999999999999 8777 778995 999998765

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=82.94  E-value=0.83  Score=44.11  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             CeEEEEcchhHHHHHHHHHHHC--CCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~--g~~i~v~nR~~  401 (403)
                      ..++|+|+|.++.++++.|++.  |.+|.|+.+..
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~  100 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCc
Confidence            3699999999999999999998  88999998854

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=82.93  E-value=18  Score=33.81  Aligned_cols=160  Identities=14%  Similarity=0.168  Sum_probs=94.1

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCC----CCCCchHHHHHH---h-cCCCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCIN----NFQPGKDLEIIL---T-KKPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~l~---~-~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (403)
                      +.+++++.+++..+.|||.|.+=--.-.    ..+..+++.++.   + .....+.+++-|.            +-+..+
T Consensus        28 ~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~~v~iSIDT~------------~~~Va~   95 (270)
T 4hb7_A           28 NVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDTF------------RSEVAE   95 (270)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECS------------CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcCCCeEEEECC------------CHHHHH
Confidence            4577888888888999999998533222    122234444432   1 1223345555542            346778


Q ss_pred             HHHHcCCcEEE-Ee-ccccchHHHHHHhccCCCcEEEEeccCCCCCCCH--------hHHHHHHHHHHHcCCCEEEEEee
Q 015614           93 LAEDLGADYVD-FE-LKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE--------EDLGYLVSRMQATGADIIKLVFS  162 (403)
Q Consensus        93 ~~~~~g~~yvD-iE-l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~--------~~l~~~~~~~~~~gadivKia~~  162 (403)
                      ++++.|++.|- |- ....++.++ +..  ..+..+|+-| . .++|..        .++.+.++++.+.|.+-=+|..=
T Consensus        96 ~al~aGa~iINDVs~g~~d~~m~~-~va--~~~~~~vlMH-~-~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilD  170 (270)
T 4hb7_A           96 ACLKLGVDMINDQWAGLYDHRMFQ-IVA--KYDAEIILMH-N-GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLD  170 (270)
T ss_dssp             HHHHHTCCEEEETTTTSSCTHHHH-HHH--HTTCEEEEEC-C-CSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             HHHHhccceeccccccccchhHHH-HHH--HcCCCeEEec-c-ccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEe
Confidence            89999999874 43 223344443 332  3577888874 3 455643        22455567788888543356654


Q ss_pred             -----cCCHhHHHHHHHHhc---cCCCCEEEEEcCccchhhhhh
Q 015614          163 -----VNDITEIARIFQLLS---HCQVPIIAYSVGERGLVSQLL  198 (403)
Q Consensus       163 -----~~~~~D~~~ll~~~~---~~~~p~i~~~MG~~G~~SRil  198 (403)
                           ..+.++++.|++-+.   ..+.|+ .++......+..++
T Consensus       171 PGiGFgKt~~~N~~ll~~l~~~~~lg~Pv-LvG~SRKsfig~~l  213 (270)
T 4hb7_A          171 PGIGFAKTRNEEAEVMARLDELVATEYPV-LLATSRKRFTKEMM  213 (270)
T ss_dssp             CCTTSSCCHHHHHHHHTCHHHHHTTCSCB-EECCTTSHHHHHHH
T ss_pred             CCCCcccccccHHHHHhhHHHHhcCCCCE-EEEecHHHHHHHHh
Confidence                 478999999886654   346774 44555555444544

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=82.91  E-value=1.2  Score=45.88  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...+|+++|||+|-+|--++.+|++.+.+|+++.|++
T Consensus       182 ~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~  218 (545)
T 3uox_A          182 DFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTP  218 (545)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSC
T ss_pred             ccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCC
Confidence            4568999999999999999999999988999999986

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=82.88  E-value=16  Score=32.84  Aligned_cols=150  Identities=14%  Similarity=0.081  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC----chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP----GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (403)
                      +..++.   +.+.+.|+|+|.++ |.-.....    .+.++.+++..++|+|+.      ||..+  .    +-++.+++
T Consensus        32 d~~~~a---~~~~~~Gad~i~v~-d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~------Ggi~~--~----~~~~~~~~   95 (252)
T 1ka9_F           32 DPVEAA---RAYDEAGADELVFL-DISATHEERAILLDVVARVAERVFIPLTVG------GGVRS--L----EDARKLLL   95 (252)
T ss_dssp             CHHHHH---HHHHHHTCSCEEEE-ECCSSTTCHHHHHHHHHHHHTTCCSCEEEE------SSCCS--H----HHHHHHHH
T ss_pred             CHHHHH---HHHHHcCCCEEEEE-cCCccccCccccHHHHHHHHHhCCCCEEEE------CCcCC--H----HHHHHHHH
Confidence            444444   44456799999988 64322111    234666777779999984      44432  2    23455666


Q ss_pred             cCCcEEEEecccc--chHHHHHHhccC-CCcEEEEeccCC-----CCCCCH-----hHHHHHHHHHHHcCCCEEEEEeec
Q 015614           97 LGADYVDFELKVA--SNILGKQYSSHQ-SGTRFIVSCNLD-----CETPSE-----EDLGYLVSRMQATGADIIKLVFSV  163 (403)
Q Consensus        97 ~g~~yvDiEl~~~--~~~~~~l~~~~~-~~~kiI~S~H~f-----~~tp~~-----~~l~~~~~~~~~~gadivKia~~~  163 (403)
                      .|++.|=+--...  ++.+.++..... ....+-+|.|..     -.+-.|     ....+..+++.+.|++.+=+....
T Consensus        96 ~Gad~V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~  175 (252)
T 1ka9_F           96 SGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMD  175 (252)
T ss_dssp             HTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cCCCEEEEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEeccc
Confidence            7899887743332  233444432211 123455555420     001111     234666777777898865443222


Q ss_pred             CC----HhHHHHHHHHhccCCCCEEEE
Q 015614          164 ND----ITEIARIFQLLSHCQVPIIAY  186 (403)
Q Consensus       164 ~~----~~D~~~ll~~~~~~~~p~i~~  186 (403)
                      .+    ..|...+-++....+.|+|+.
T Consensus       176 ~~g~~~g~~~~~i~~l~~~~~ipvia~  202 (252)
T 1ka9_F          176 RDGTKEGYDLRLTRMVAEAVGVPVIAS  202 (252)
T ss_dssp             TTTTCSCCCHHHHHHHHHHCSSCEEEE
T ss_pred             CCCCcCCCCHHHHHHHHHHcCCCEEEe
Confidence            21    113333344444457888764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=82.80  E-value=0.58  Score=46.96  Aligned_cols=36  Identities=25%  Similarity=0.203  Sum_probs=30.5

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..|++++|+|+ ||.+.+++..++..|++++++.++.
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~  263 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSP  263 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCH
Confidence            35789999998 9999999999999999877776654

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=82.74  E-value=32  Score=32.38  Aligned_cols=121  Identities=12%  Similarity=0.097  Sum_probs=73.0

Q ss_pred             HHHHHHHhcCCCEEEEEecCCCCCCCchHH---HHHHh---cCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614           27 SNMYQAKAEGADVVEIRLDCINNFQPGKDL---EIILT---KKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD  100 (403)
Q Consensus        27 ~~~~~~~~~~~D~vElRlD~l~~~~~~~~l---~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~  100 (403)
                      .++++++..|||.|=+++..=.+. ..+.+   ..+++   ...+|+|+-.   ..|+....+++.-...-+.+.++|+|
T Consensus       129 ~~ve~Av~~GAdaV~~~i~~Gs~~-~~~~l~~i~~v~~~a~~~GlpvIie~---~~G~~~~~d~e~i~~aariA~elGAD  204 (295)
T 3glc_A          129 LSMDDAVRLNSCAVAAQVYIGSEY-EHQSIKNIIQLVDAGMKVGMPTMAVT---GVGKDMVRDQRYFSLATRIAAEMGAQ  204 (295)
T ss_dssp             SCHHHHHHTTCSEEEEEECTTSTT-HHHHHHHHHHHHHHHHTTTCCEEEEE---CC----CCSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHCCCCEEEEEEECCCCc-HHHHHHHHHHHHHHHHHcCCEEEEEC---CCCCccCCCHHHHHHHHHHHHHhCCC
Confidence            345666789999999998865332 12233   33432   3479988753   23555444444333456778899999


Q ss_pred             EEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015614          101 YVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK  158 (403)
Q Consensus       101 yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivK  158 (403)
                      ||=..+.  .+.++++...  ....||+|=-.  .+ +.++..+.+..+.+.||+-+=
T Consensus       205 ~VKt~~t--~e~~~~vv~~--~~vPVv~~GG~--~~-~~~~~l~~v~~ai~aGA~Gv~  255 (295)
T 3glc_A          205 IIKTYYV--EKGFERIVAG--CPVPIVIAGGK--KL-PEREALEMCWQAIDQGASGVD  255 (295)
T ss_dssp             EEEEECC--TTTHHHHHHT--CSSCEEEECCS--CC-CHHHHHHHHHHHHHTTCSEEE
T ss_pred             EEEeCCC--HHHHHHHHHh--CCCcEEEEECC--CC-CHHHHHHHHHHHHHhCCeEEE
Confidence            9998864  2345566533  34667776321  12 357788888888888987443

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=82.61  E-value=0.82  Score=50.78  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +.+.+|+|+|+||.|..++..|...|+ +|+|++.+
T Consensus        25 L~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D   60 (1015)
T 3cmm_A           25 MQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPE   60 (1015)
T ss_dssp             HTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             HhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCC
Confidence            456899999999999999999999999 99999864

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=82.59  E-value=4.7  Score=37.16  Aligned_cols=149  Identities=17%  Similarity=0.180  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHh--cCCCcEEEEeecCCCCCCCC-CCHHHHHHHHHHHHHcC
Q 015614           22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT--KKPLPVLIVYRPKWAGGLYE-GDEHKRLEALHLAEDLG   98 (403)
Q Consensus        22 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~~eGG~~~-~~~~~~~~ll~~~~~~g   98 (403)
                      .++....++.+.+.|+++|+.--         ..+....+  ..+.|+++.+.....-  ++ ...+...+..+.+++.|
T Consensus        44 ~~~~~~~~~~~~~~g~~~i~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~d~~~~~~~~~v~~a~~~G  112 (273)
T 2qjg_A           44 LIDIRKTVNDVAEGGANAVLLHK---------GIVRHGHRGYGKDVGLIIHLSGGTAI--SPNPLKKVIVTTVEEAIRMG  112 (273)
T ss_dssp             SSSHHHHHHHHHHHTCSEEEECH---------HHHHSCCCSSSCCCEEEEECEECCTT--SSSTTCCEECSCHHHHHHTT
T ss_pred             hhhHHHHHHHHHhcCCCEEEeCH---------HHHHHHHHhhcCCCCEEEEEcCCCcC--CCCcccchHHHHHHHHHHcC
Confidence            34444555666678999998511         11221111  1367888887742210  10 11111233456788899


Q ss_pred             CcEEEEeccccc-------hHHHHHH-hccCCCcEEEEec-----cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015614           99 ADYVDFELKVAS-------NILGKQY-SSHQSGTRFIVSC-----NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND  165 (403)
Q Consensus        99 ~~yvDiEl~~~~-------~~~~~l~-~~~~~~~kiI~S~-----H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~  165 (403)
                      ++.||+.+....       +..+++. ..++.+.++|+-.     |. ...-+.+++.+..+.+.+.|+|++|+-. +. 
T Consensus       113 a~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l-~~~~~~~~~~~~a~~a~~~Gad~i~~~~-~~-  189 (273)
T 2qjg_A          113 ADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHI-QNERDPELVAHAARLGAELGADIVKTSY-TG-  189 (273)
T ss_dssp             CSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTC-SCTTCHHHHHHHHHHHHHTTCSEEEECC-CS-
T ss_pred             CCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccc-CCCCCHhHHHHHHHHHHHcCCCEEEECC-CC-
Confidence            999977653321       1223333 2233456666532     21 1111234555555788899999999874 22 


Q ss_pred             HhHHHHHHHHhccCCCCEEEE
Q 015614          166 ITEIARIFQLLSHCQVPIIAY  186 (403)
Q Consensus       166 ~~D~~~ll~~~~~~~~p~i~~  186 (403)
                        |...+.++....+.|+++.
T Consensus       190 --~~~~l~~i~~~~~ipvva~  208 (273)
T 2qjg_A          190 --DIDSFRDVVKGCPAPVVVA  208 (273)
T ss_dssp             --SHHHHHHHHHHCSSCEEEE
T ss_pred             --CHHHHHHHHHhCCCCEEEE
Confidence              3333333333446787764

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=82.57  E-value=0.67  Score=44.41  Aligned_cols=36  Identities=31%  Similarity=0.405  Sum_probs=30.1

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCC-CeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g-~~i~v~nR~~~  402 (403)
                      .+++++|+|+|+.+.+++..++.+| .+|+.+.++.+
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~  207 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDD  207 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence            4789999999999999988887775 59998887653

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=82.54  E-value=1.4  Score=45.29  Aligned_cols=38  Identities=26%  Similarity=0.361  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.++++.|+|.|-.|++++..|...|++|++++|+.
T Consensus       138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~  175 (529)
T 1ygy_A          138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV  175 (529)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCC
Confidence            35778999999999999999999999999999999875

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=82.35  E-value=3.4  Score=40.28  Aligned_cols=86  Identities=13%  Similarity=0.154  Sum_probs=58.6

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHH---hcCCCEEEEEecCCC-----CC--CC---chHHHHHHhcCCCcEEEEeecCCC
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAK---AEGADVVEIRLDCIN-----NF--QP---GKDLEIILTKKPLPVLIVYRPKWA   76 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~---~~~~D~vElRlD~l~-----~~--~~---~~~l~~l~~~~~~PiI~T~R~~~e   76 (403)
                      .| +.++|.+.+.+|...-++...   ..|+|+|||=+-+=.     .+  ++   .+.++.+++..++|+++-+|..  
T Consensus       127 ~p-vivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~--  203 (354)
T 4ef8_A          127 KP-LFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPY--  203 (354)
T ss_dssp             CC-EEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCC--
T ss_pred             Cc-EEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecCC--
Confidence            44 678999999999887776654   458999999876411     11  11   1234445566799999999963  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcC-CcEEE
Q 015614           77 GGLYEGDEHKRLEALHLAEDLG-ADYVD  103 (403)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g-~~yvD  103 (403)
                           .++++..++.+.+.+.| ++.|-
T Consensus       204 -----~d~~~~~~~a~~~~~~Gg~d~I~  226 (354)
T 4ef8_A          204 -----FDFAHFDAAAEILNEFPKVQFIT  226 (354)
T ss_dssp             -----CSHHHHHHHHHHHHTCTTEEEEE
T ss_pred             -----CCHHHHHHHHHHHHhCCCccEEE
Confidence                 24556666677777787 88764

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=82.33  E-value=7.7  Score=35.39  Aligned_cols=144  Identities=15%  Similarity=0.115  Sum_probs=86.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHH--HHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHc
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEI--ILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~--l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (403)
                      .+.+++.+..+++.+.+++.|=+        ++. .+..  ..+.+++++ .|+=.=+.|-.   +-+.+..=.+.+++.
T Consensus        26 ~t~~~i~~lc~eA~~~~~~aVcV--------~p~-~v~~a~~l~~~~v~v-~tVigFP~G~~---~~~~K~~E~~~Ai~~   92 (231)
T 3ndo_A           26 ATPSDVTALVDEAADLGVFAVCV--------SPP-LVSVAAGVAPSGLAI-AAVAGFPSGKH---VPGIKATEAELAVAA   92 (231)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEE--------CGG-GHHHHHHHCCTTCEE-EEEESTTTCCS---CHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCcEEEE--------CHH-HHHHHHHhcCCCCeE-EEEecCCCCCC---cHHHHHHHHHHHHHc
Confidence            45678888888888888887765        221 2222  222234333 34433223222   335566566789999


Q ss_pred             CCcEEEEeccccc----------hHHHHHHhc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe-----
Q 015614           98 GADYVDFELKVAS----------NILGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF-----  161 (403)
Q Consensus        98 g~~yvDiEl~~~~----------~~~~~l~~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~-----  161 (403)
                      |++-||+=++...          +.+..+... +....|+|+--.......+.+++....+-+.+.|||+||--+     
T Consensus        93 GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~~~  172 (231)
T 3ndo_A           93 GATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFHPS  172 (231)
T ss_dssp             TCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCCTT
T ss_pred             CCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCCCC
Confidence            9999998665521          122333322 223568888765431112457788888888899999999874     


Q ss_pred             ecCCHhHHHHHHHHh
Q 015614          162 SVNDITEIARIFQLL  176 (403)
Q Consensus       162 ~~~~~~D~~~ll~~~  176 (403)
                      -..+.+|+..+.+..
T Consensus       173 ~gAt~edv~lm~~~v  187 (231)
T 3ndo_A          173 GGASVQAVEIMARTV  187 (231)
T ss_dssp             CSCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHh
Confidence            234677876666553

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=82.31  E-value=15  Score=33.54  Aligned_cols=127  Identities=18%  Similarity=0.239  Sum_probs=72.8

Q ss_pred             HHHHHHHhcCCCEE--EEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCC--CCHHHHHHHHHHHHHcCC
Q 015614           27 SNMYQAKAEGADVV--EIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYE--GDEHKRLEALHLAEDLGA   99 (403)
Q Consensus        27 ~~~~~~~~~~~D~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~~~g~   99 (403)
                      .+++.++..|+|.|  -+|.-........+.+..+.   +..++|+|+-.-  ..|...+  .+.+...++.+.+.+.|+
T Consensus       103 ~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~--~~G~~l~~~~~~~~~~~~a~~a~~~Ga  180 (273)
T 2qjg_A          103 TTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMY--PRGKHIQNERDPELVAHAARLGAELGA  180 (273)
T ss_dssp             SCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEE--ECSTTCSCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeC--CCCcccCCCCCHhHHHHHHHHHHHcCC
Confidence            34556677899999  66655432110011223333   334788887542  2233221  234444445578889999


Q ss_pred             cEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       100 ~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +||=+......+.++++...  -...+|++==  -.+++.++..+.+.++.+.|++-+=+
T Consensus       181 d~i~~~~~~~~~~l~~i~~~--~~ipvva~GG--i~~~~~~~~~~~~~~~~~~Ga~gv~v  236 (273)
T 2qjg_A          181 DIVKTSYTGDIDSFRDVVKG--CPAPVVVAGG--PKTNTDEEFLQMIKDAMEAGAAGVAV  236 (273)
T ss_dssp             SEEEECCCSSHHHHHHHHHH--CSSCEEEECC--SCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred             CEEEECCCCCHHHHHHHHHh--CCCCEEEEeC--CCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence            99988753333455555532  2466777532  12334678888888888899984443

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=82.04  E-value=0.76  Score=45.66  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCC-----CeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRG-----ARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g-----~~i~v~nR~~  401 (403)
                      ..++|||+|-++.+++..|.+.|     .+|+|+.+..
T Consensus        31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~   68 (463)
T 3s5w_A           31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQG   68 (463)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCC
Confidence            36999999999999999999999     8999998864

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=82.03  E-value=1.4  Score=48.09  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++++|||+|-++.++++.|.+.|.+|+|+.+.
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~  310 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR  310 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            4679999999999999999999999999999865

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=81.98  E-value=1.1  Score=48.39  Aligned_cols=33  Identities=27%  Similarity=0.441  Sum_probs=30.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      +++++|||+|-+|.++++.|.+.|.+|.|+.+.
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~  368 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAK  368 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            578999999999999999999999999999864

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=81.97  E-value=3.4  Score=41.51  Aligned_cols=50  Identities=22%  Similarity=0.237  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEE
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF  397 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~  397 (403)
                      ++|.+..++..+...         +..++|++++|=|.|-+|..++.-|.++|++|..+
T Consensus       215 g~Gv~~~~~~~~~~~---------~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVav  264 (450)
T 4fcc_A          215 GYGLVYFTEAMLKRH---------GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA  264 (450)
T ss_dssp             HHHHHHHHHHHHHHT---------TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             eeeHHHHHHHHHHHc---------CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEE
Confidence            668788877776532         25678999999999999999999999999976543

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=81.93  E-value=8.4  Score=36.02  Aligned_cols=107  Identities=18%  Similarity=0.185  Sum_probs=59.6

Q ss_pred             HHHhcCCCEEEEE--ecC----CCC---CCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 015614           31 QAKAEGADVVEIR--LDC----INN---FQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADY  101 (403)
Q Consensus        31 ~~~~~~~D~vElR--lD~----l~~---~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~y  101 (403)
                      .+.+.|+++|++|  ++.    +..   ....+.++.+++.+++|+++..+..        +    .+.++.+.+.|+++
T Consensus        36 ~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~--------~----~~~~~~~~~aGad~  103 (297)
T 2zbt_A           36 IAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIG--------H----FVEAMILEAIGVDF  103 (297)
T ss_dssp             HHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETT--------C----HHHHHHHHHTTCSE
T ss_pred             HHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccC--------C----HHHHHHHHHCCCCE
Confidence            3445799999996  221    111   1123567778877899999876632        1    23455667789999


Q ss_pred             EEEeccc-cchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614          102 VDFELKV-ASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (403)
Q Consensus       102 vDiEl~~-~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  160 (403)
                      ||.-... ..++.+.+... ....-++...|+      .++.    .++.+.|+|++.+-
T Consensus       104 v~~~~~~~~~~~~~~~~~~-~~~i~l~~~v~~------~~~~----~~a~~~Gad~I~v~  152 (297)
T 2zbt_A          104 IDESEVLTPADEEHHIDKW-KFKVPFVCGARN------LGEA----LRRIAEGAAMIRTK  152 (297)
T ss_dssp             EEEETTSCCSCSSCCCCGG-GCSSCEEEEESS------HHHH----HHHHHTTCSEEEEC
T ss_pred             EeeeCCCChHHHHHHHHHh-CCCceEEeecCC------HHHH----HHHHHcCCCEEEEc
Confidence            9754322 12222222111 124445555553      2332    33567899997654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=81.81  E-value=1.2  Score=44.89  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             CeEEEEcchhHHHHHHHHHHHC--CCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~--g~~i~v~nR~~  401 (403)
                      ++++|||+|-++.+++..|+++  |.+|+|+.+..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~   71 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGE   71 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC
Confidence            5899999999999999999986  77999998864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=81.73  E-value=1.5  Score=41.61  Aligned_cols=36  Identities=14%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +.+++++|+|+|-+|--++..|.+.|.+|+++.|..
T Consensus       164 ~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~  199 (369)
T 3d1c_A          164 FNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTT  199 (369)
T ss_dssp             SCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCC
Confidence            357899999999999999999999999999998863

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=81.71  E-value=2.6  Score=38.03  Aligned_cols=36  Identities=25%  Similarity=0.331  Sum_probs=24.3

Q ss_pred             CCeEEEEcchhHHHHHHHH--HHHCCC-eEEEEecCCCC
Q 015614          368 GRMFVLAGAGGAGRALAFG--AKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~a--l~~~g~-~i~v~nR~~~k  403 (403)
                      ..+++|+|+|.+|++++..  ....|+ -+-+++++++|
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k  123 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESK  123 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTT
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHH
Confidence            3579999999999999885  334577 46788888764

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=81.65  E-value=19  Score=31.60  Aligned_cols=146  Identities=10%  Similarity=-0.002  Sum_probs=90.3

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (403)
                      +|+++-..++++.++.+++. ......+++=..++....+ +.++.+|+..+.++++-+-.-      +... .-.+..+
T Consensus         2 lila~D~~~l~~~~~~~~~~-~~~~~~~kv~~~~f~~~G~-~~i~~lr~~~~~~v~~D~kl~------DI~~-t~~~~v~   72 (208)
T 2czd_A            2 IVLALDVYEGERAIKIAKSV-KDYISMIKVNWPLILGSGV-DIIRRLKEETGVEIIADLKLA------DIPN-TNRLIAR   72 (208)
T ss_dssp             EEEECCCCSHHHHHHHHHHH-GGGCSEEEEEHHHHHHHCT-THHHHHHHHHCCEEEEEEEEC------SCHH-HHHHHHH
T ss_pred             eEEEecCCCHHHHHHHHHHh-cccccEEEecHHHHHhhCH-HHHHHHHHcCCCEEEEEeeeC------chHH-HHHHHHH
Confidence            68999999999999888775 3346778887777743333 367777765356777666642      1111 1123556


Q ss_pred             HHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCC-----HhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015614           93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPS-----EEDLGYLVSRMQATGADIIKLVFSVNDIT  167 (403)
Q Consensus        93 ~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~-----~~~l~~~~~~~~~~gadivKia~~~~~~~  167 (403)
                      .++++|+|+|-+-.....+.++.++..  .+.-+..+.    ..+.     .+.+........+.|+|.+|+  .+..++
T Consensus        73 ~~~~~Gad~vtvh~~~g~~~i~~~~~~--~gv~vl~~t----~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~--~~~~~~  144 (208)
T 2czd_A           73 KVFGAGADYVIVHTFVGRDSVMAVKEL--GEIIMVVEM----SHPGALEFINPLTDRFIEVANEIEPFGVIA--PGTRPE  144 (208)
T ss_dssp             HHHHTTCSEEEEESTTCHHHHHHHHTT--SEEEEECCC----CSGGGGTTTGGGHHHHHHHHHHHCCSEEEC--CCSSTH
T ss_pred             HHHhcCCCEEEEeccCCHHHHHHHHHh--CCcEEEEec----CCcchhhHHHHHHHHHHHHHHHhCCcEEEE--CCCChH
Confidence            778899999999888776666655422  233333331    1111     233555666777889998864  455565


Q ss_pred             HHHHHHHH
Q 015614          168 EIARIFQL  175 (403)
Q Consensus       168 D~~~ll~~  175 (403)
                      +...+-+.
T Consensus       145 ~i~~lr~~  152 (208)
T 2czd_A          145 RIGYIRDR  152 (208)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            65444433

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=81.46  E-value=34  Score=31.78  Aligned_cols=150  Identities=10%  Similarity=0.136  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCC----C-CCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINN----F-QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE   95 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~-~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~   95 (403)
                      +.++.++-++.+.+.|++.||.---.-.+    . +..+.++.+++..+.|+..-+ .         +    .+-++.++
T Consensus        24 ~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~-~---------n----~~~i~~a~   89 (295)
T 1ydn_A           24 PTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLV-P---------N----MKGYEAAA   89 (295)
T ss_dssp             CHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEEC-S---------S----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEe-C---------C----HHHHHHHH
Confidence            45666666777777899999996311111    0 112333344333356664433 1         1    24467888


Q ss_pred             HcCCcEEEEecccc------------chHHH---HHH-hccCCCcEEE--Eecc----CCCCCCCHhHHHHHHHHHHHcC
Q 015614           96 DLGADYVDFELKVA------------SNILG---KQY-SSHQSGTRFI--VSCN----LDCETPSEEDLGYLVSRMQATG  153 (403)
Q Consensus        96 ~~g~~yvDiEl~~~------------~~~~~---~l~-~~~~~~~kiI--~S~H----~f~~tp~~~~l~~~~~~~~~~g  153 (403)
                      +.|++.|-+.....            ++.++   +.+ ..++.+.++-  +|+-    +...+ +.+++.++++++.+.|
T Consensus        90 ~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~-~~~~~~~~~~~~~~~G  168 (295)
T 1ydn_A           90 AAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPV-TPQAVASVTEQLFSLG  168 (295)
T ss_dssp             HTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEEC-CHHHHHHHHHHHHHHT
T ss_pred             HCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCC-CHHHHHHHHHHHHhcC
Confidence            89999988875332            11121   222 3445667775  3321    00112 4578999999999999


Q ss_pred             CCEEEEEeec--CCHhHHHHHHHHhccC-C-CCEEE
Q 015614          154 ADIIKLVFSV--NDITEIARIFQLLSHC-Q-VPIIA  185 (403)
Q Consensus       154 adivKia~~~--~~~~D~~~ll~~~~~~-~-~p~i~  185 (403)
                      +|.+-++-+.  .++.+..++++.+.+. + .|+..
T Consensus       169 ~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~  204 (295)
T 1ydn_A          169 CHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAG  204 (295)
T ss_dssp             CSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEE
T ss_pred             CCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence            9999998544  3688888888876543 3 45543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=81.29  E-value=1.1  Score=46.35  Aligned_cols=34  Identities=35%  Similarity=0.594  Sum_probs=30.6

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...++|+|+|.++.++++.|++.|.+|+|+.+..
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~  159 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP  159 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4579999999999999999999999999998753

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=81.24  E-value=0.67  Score=49.64  Aligned_cols=35  Identities=14%  Similarity=0.180  Sum_probs=32.0

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      -+++.|||+|-+|.+++..|++.|.+|++++|+++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            36799999999999999999999999999999854

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=81.13  E-value=0.69  Score=49.43  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=32.1

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      -+++.|||+|-+|.+++..|++.|.+|++++|+++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            46799999999999999999999999999999854

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=81.07  E-value=2  Score=35.89  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=30.5

Q ss_pred             CCCeEEEEcc----hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGA----GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGa----GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +.+++.|+|+    |-.++.++..|.+.|.+|+.+|++.
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~   51 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNY   51 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCC
Confidence            4578999999    9999999999999999988888764

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=81.01  E-value=11  Score=35.68  Aligned_cols=86  Identities=10%  Similarity=0.088  Sum_probs=61.0

Q ss_pred             eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----------C--CC---chHHHHHHhcCCCcEEEEeecCCC
Q 015614           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN----------F--QP---GKDLEIILTKKPLPVLIVYRPKWA   76 (403)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~----------~--~~---~~~l~~l~~~~~~PiI~T~R~~~e   76 (403)
                      .+.+.|.+.+.+++..-++.+.+. +|.|||-+.+=..          +  ++   .+.++.+++..+.|+.+-+|.   
T Consensus        60 ~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---  135 (318)
T 1vhn_A           60 NVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRL---  135 (318)
T ss_dssp             TEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEES---
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecC---
Confidence            357888899999998888888777 9999998875321          0  11   134556666678898888886   


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614           77 GGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (403)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~~yvDiE  105 (403)
                       |. ...+  -.++.+.+.+.|+++|.|.
T Consensus       136 -G~-~~~~--~~~~a~~l~~~G~d~i~v~  160 (318)
T 1vhn_A          136 -GW-EKNE--VEEIYRILVEEGVDEVFIH  160 (318)
T ss_dssp             -CS-SSCC--HHHHHHHHHHTTCCEEEEE
T ss_pred             -CC-ChHH--HHHHHHHHHHhCCCEEEEc
Confidence             32 2222  2277888889999999985

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=80.99  E-value=4.8  Score=39.18  Aligned_cols=90  Identities=13%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             cccCCHHHH----HHHHHHHHhcCCCEEEEEecC-------CCC----CCC-------------chHHHHHHhcCC-CcE
Q 015614           17 LMAQSVEQV----LSNMYQAKAEGADVVEIRLDC-------INN----FQP-------------GKDLEIILTKKP-LPV   67 (403)
Q Consensus        17 l~~~~~~e~----~~~~~~~~~~~~D~vElRlD~-------l~~----~~~-------------~~~l~~l~~~~~-~Pi   67 (403)
                      ++..++++.    ...++.+.+.|+|.|||-.-+       +.+    ..+             .+.++.+|+... -||
T Consensus       151 mt~~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v  230 (364)
T 1vyr_A          151 LELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRI  230 (364)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcE
Confidence            444444444    333444567899999997632       111    011             133556666552 277


Q ss_pred             EEEeecC--CCCC-CCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           68 LIVYRPK--WAGG-LYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        68 I~T~R~~--~eGG-~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      .+-++..  .+|. ....+.++..++.+.+.+.|++||++-.
T Consensus       231 ~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~  272 (364)
T 1vyr_A          231 GIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSE  272 (364)
T ss_dssp             EEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence            7766654  2220 1122446788888999999999999864

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=80.96  E-value=36  Score=31.75  Aligned_cols=147  Identities=14%  Similarity=0.126  Sum_probs=84.8

Q ss_pred             hcCCCEEEEEecCCC-------CC---CCch---HHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614           34 AEGADVVEIRLDCIN-------NF---QPGK---DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD  100 (403)
Q Consensus        34 ~~~~D~vElRlD~l~-------~~---~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~  100 (403)
                      +.|+|++ +-=|.+.       +.   +..+   ..+.+++..+.|+|+ .-.  .-|.+..+.++-++-..+.++.|++
T Consensus        35 ~aG~d~i-lvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vv-aD~--pfgsy~~s~~~a~~na~rl~kaGa~  110 (275)
T 1o66_A           35 DAGVEML-LVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIV-SDL--PFGAYQQSKEQAFAAAAELMAAGAH  110 (275)
T ss_dssp             HTTCCEE-EECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEE-EEC--CTTSSSSCHHHHHHHHHHHHHTTCS
T ss_pred             HcCCCEE-EECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEE-EEC--CCCCccCCHHHHHHHHHHHHHcCCc
Confidence            4699999 7556542       11   1122   333455667877776 332  3344556676666666677888999


Q ss_pred             EEEEeccccchHHHHHHhccCCCcEEEEe-------ccC---C---CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015614          101 YVDFELKVASNILGKQYSSHQSGTRFIVS-------CNL---D---CETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT  167 (403)
Q Consensus       101 yvDiEl~~~~~~~~~l~~~~~~~~kiI~S-------~H~---f---~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~  167 (403)
                      .|-||-..  +....+......++.+++.       .|.   |   -+|-..+++.+.....++.|||.+=+=..+   +
T Consensus       111 aVklEdg~--e~~~~I~al~~agIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~vp---~  185 (275)
T 1o66_A          111 MVKLEGGV--WMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECVL---A  185 (275)
T ss_dssp             EEEEECSG--GGHHHHHHHHHTTCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEESCC---H
T ss_pred             EEEECCcH--HHHHHHHHHHHcCCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHHcCCcEEEEecCC---H
Confidence            99999753  2222232222234444421       121   1   122223667777778888999988776654   2


Q ss_pred             HHHHHHHHhccCCCCEEEEEcCcc
Q 015614          168 EIARIFQLLSHCQVPIIAYSVGER  191 (403)
Q Consensus       168 D~~~ll~~~~~~~~p~i~~~MG~~  191 (403)
                      ++.  -+++...++|+|.|+-|+.
T Consensus       186 ~~a--~~it~~l~iP~igIGaG~~  207 (275)
T 1o66_A          186 ELA--KKVTETVSCPTIGIGAGAD  207 (275)
T ss_dssp             HHH--HHHHHHCSSCEEEESSCSC
T ss_pred             HHH--HHHHHhCCCCEEEECCCCC
Confidence            332  2445556799999887764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=80.94  E-value=1.3  Score=45.27  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=28.9

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEec
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR  399 (403)
                      ...++|+|+|.+|.+++..|++.|.++.|+.+
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~  243 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE  243 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEEC
Confidence            45799999999999999999999999888865

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=80.81  E-value=14  Score=35.11  Aligned_cols=103  Identities=12%  Similarity=0.106  Sum_probs=68.4

Q ss_pred             CCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHH
Q 015614            6 ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEH   85 (403)
Q Consensus         6 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~   85 (403)
                      |...++.+||.+-.++.++++..++.. ...++.+++-+.++....+ +.+..|++..+.++++=+..-      +... 
T Consensus        20 ~~~k~~~LiVALD~~~~~eal~l~~~l-~~~v~~vKVG~~lf~~~G~-~~V~~Lk~~~g~~IflDlKl~------DIpn-   90 (303)
T 3ru6_A           20 FQSNAMKLCVALDLSTKEECLQLAKEL-KNLDIWLKVGLRAYLRDGF-KFIEELKKVDDFKIFLDLKFH------DIPN-   90 (303)
T ss_dssp             ----CCEEEEECCCSSHHHHHHHHHHT-TTSSCEEEECHHHHHHHTH-HHHHHHHHHCCCEEEEEEEEC------SCHH-
T ss_pred             HHhcCCCEEEEeCCCCHHHHHHHHHHh-CCCccEEEeCHHHHHHhCH-HHHHHHHHhhCCCEEEEeeec------cCch-
Confidence            566788899999999999999888775 4558999998777653332 356677665577888777642      2221 


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccccchHHHHHH
Q 015614           86 KRLEALHLAEDLGADYVDFELKVASNILGKQY  117 (403)
Q Consensus        86 ~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~  117 (403)
                      --....+.+.++|++++-+=-....+.++..+
T Consensus        91 Tv~~av~~~a~lGaD~vTVHa~~G~~~m~aa~  122 (303)
T 3ru6_A           91 TMADACEEVSKLGVDMINIHASAGKIAIQEVM  122 (303)
T ss_dssp             HHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCCEEEEeccCCHHHHHHHH
Confidence            11123456788999999997766665555444

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=80.44  E-value=2.7  Score=42.49  Aligned_cols=52  Identities=13%  Similarity=0.149  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEec
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI  399 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR  399 (403)
                      +.|....++..+...         +..++|++++|-|.|.+|..++.-|.++|++|. |.+.
T Consensus       232 g~Gv~~~~~~~l~~~---------G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~  284 (470)
T 2bma_A          232 GYGLVYFVLEVLKSL---------NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDS  284 (470)
T ss_dssp             HHHHHHHHHHHHHTT---------TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEET
T ss_pred             hHHHHHHHHHHHHhc---------cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeC
Confidence            568888888877632         245789999999999999999999999999654 6664

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=80.36  E-value=1.1  Score=45.19  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=30.6

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCC---CeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRG---ARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g---~~i~v~nR~~  401 (403)
                      .++++|||+|-++.+++..|++.|   .+|+|+.++.
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~   71 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNS   71 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCC
Confidence            368999999999999999999988   7999999864

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=80.21  E-value=1.7  Score=44.10  Aligned_cols=38  Identities=13%  Similarity=0.176  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHC--CCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~--g~~i~v~nR~~  401 (403)
                      ..++||+|+|||+|-+|-=|+..|++.  +.+|+++-|++
T Consensus       242 ~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          242 DKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             CTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             cccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            346799999999999999999999865  45899999874

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=80.19  E-value=6.4  Score=38.33  Aligned_cols=84  Identities=12%  Similarity=0.023  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecC------------------CCCC-C--C---chHHHHHHhcCC-CcEEEEeecC-CCC
Q 015614           24 QVLSNMYQAKAEGADVVEIRLDC------------------INNF-Q--P---GKDLEIILTKKP-LPVLIVYRPK-WAG   77 (403)
Q Consensus        24 e~~~~~~~~~~~~~D~vElRlD~------------------l~~~-~--~---~~~l~~l~~~~~-~PiI~T~R~~-~eG   77 (403)
                      ++..-++.+.+.|+|.|||-.-+                  +... +  .   .+.++.+|+... -|+.+-++.. +..
T Consensus       162 ~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~  241 (365)
T 2gou_A          162 DYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLN  241 (365)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTT
T ss_pred             HHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccC
Confidence            33444445567899999996532                  1110 0  0   133455665442 2877766653 211


Q ss_pred             CCC-CCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015614           78 GLY-EGDEHKRLEALHLAEDLGADYVDFELK  107 (403)
Q Consensus        78 G~~-~~~~~~~~~ll~~~~~~g~~yvDiEl~  107 (403)
                      |.. ..+.++..++.+.+.+.|++||++--.
T Consensus       242 ~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~  272 (365)
T 2gou_A          242 GTVDADPILTYTAAAALLNKHRIVYLHIAEV  272 (365)
T ss_dssp             SCCCSSHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            211 123477888899999999999998643

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=80.03  E-value=15  Score=35.09  Aligned_cols=144  Identities=15%  Similarity=0.115  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCC---CCCCchHHHH-------HHhcC-CCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCIN---NFQPGKDLEI-------ILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~---~~~~~~~l~~-------l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      +.+++++.+++..+.|||+|.+--..-.   ..+..+++.+       +++.. +.||-  +-|            .+-+
T Consensus        63 ~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpIS--IDT------------~~~~  128 (318)
T 2vp8_A           63 SDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLIS--VDT------------WRAQ  128 (318)
T ss_dssp             -CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEE--EEC------------SCHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEE--EeC------------CCHH
Confidence            4677888888888999999999765432   2222333433       33443 66653  332            2346


Q ss_pred             HHHHHHHcCCcEE-EEeccccchHHHHHHhccCCCcEEEEeccCCCCC-CCH-------------------hHHHHHHHH
Q 015614           90 ALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCET-PSE-------------------EDLGYLVSR  148 (403)
Q Consensus        90 ll~~~~~~g~~yv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~t-p~~-------------------~~l~~~~~~  148 (403)
                      .++++++.|++.| ||--...++.++ +..  +.+..+|+.+ + .++ |..                   +++.+.+++
T Consensus       129 VaeaAl~aGa~iINDVsg~~d~~m~~-vaa--~~g~~vVlmh-~-~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~  203 (318)
T 2vp8_A          129 VAKAACAAGADLINDTWGGVDPAMPE-VAA--EFGAGLVCAH-T-GGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAER  203 (318)
T ss_dssp             HHHHHHHHTCCEEEETTSSSSTTHHH-HHH--HHTCEEEEEC-C--------------CCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEECCCCCchHHHH-HHH--HhCCCEEEEC-C-CCCCccccccccccccccccHHHHHHHHHHHHHHH
Confidence            7788999998877 554433344443 322  2467788874 3 444 432                   446667888


Q ss_pred             HHHcCCCEEEEEe-----ecCCHhHHHHHHHHhcc---CCCCE
Q 015614          149 MQATGADIIKLVF-----SVNDITEIARIFQLLSH---CQVPI  183 (403)
Q Consensus       149 ~~~~gadivKia~-----~~~~~~D~~~ll~~~~~---~~~p~  183 (403)
                      +.+.|.+-=+|..     +..+.++++.+++-+..   .+.|+
T Consensus       204 a~~aGI~~~~IilDPG~GF~Kt~~~nl~ll~~l~~l~~lg~Pv  246 (318)
T 2vp8_A          204 AVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPV  246 (318)
T ss_dssp             HHHTTCCGGGEEEETTTTCCTTSHHHHHHHHTHHHHHTTSSCB
T ss_pred             HHHcCCChhhEEEcCCCCcccCHHHHHHHHHHHHHHHhCCCCE
Confidence            8888853113443     34577888887766543   35564

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=80.02  E-value=26  Score=33.14  Aligned_cols=126  Identities=17%  Similarity=0.083  Sum_probs=66.6

Q ss_pred             HHHHHhcCCCEEEEEecCCCCCCCchHHHHH---H---hcCCCcEEEEeecCCCCCCCCCCH-HHHHHHHHHHHHcCCcE
Q 015614           29 MYQAKAEGADVVEIRLDCINNFQPGKDLEII---L---TKKPLPVLIVYRPKWAGGLYEGDE-HKRLEALHLAEDLGADY  101 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l---~---~~~~~PiI~T~R~~~eGG~~~~~~-~~~~~ll~~~~~~g~~y  101 (403)
                      ++.+++.|+|+|=+=+-+=.+.+..++++.+   .   +...+|+++-+-.....-.-+.++ +.-.+..+.+.++|+||
T Consensus       114 ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~  193 (304)
T 1to3_A          114 AQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADL  193 (304)
T ss_dssp             HHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSE
T ss_pred             HHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCE
Confidence            4455678999999322111222123344433   2   346999998876543221112233 44444577888899999


Q ss_pred             EEEeccc----cchHHHHHHhc-cC-CCcE-EEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614          102 VDFELKV----ASNILGKQYSS-HQ-SGTR-FIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus       102 vDiEl~~----~~~~~~~l~~~-~~-~~~k-iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      +=++.-.    ..+.+.++... .. -... |+++     +-++.+++.+.+..+.+.|++.+=+
T Consensus       194 iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~a-----GG~~~~~~~~~~~~a~~aGa~Gv~v  253 (304)
T 1to3_A          194 YKVEMPLYGKGARSDLLTASQRLNGHINMPWVILS-----SGVDEKLFPRAVRVAMEAGASGFLA  253 (304)
T ss_dssp             EEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECC-----TTSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred             EEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEEe-----cCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            9998842    11222233211 01 1334 5554     2334556677777777778765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d1sfla_	236	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	2e-53
d1gqna_	252	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	4e-53
d1vi2a2	102	c.58.1.5 (A:5-106) Putative shikimate dehydrogenas	1e-27
d1nvta2	110	c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE	2e-27
d1p77a2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	7e-27
d1npya2	102	c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like	2e-25
d1nyta2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	2e-25
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	0.003

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 236

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  175 bits (446), Expect = 2e-53
 Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 13/233 (5%)

Query: 12  MICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK----PLP 66
            + A +  Q S+E+ L      + +  DV+E+R+D   N    +  E+I   K       
Sbjct: 3   EVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFK 62

Query: 67  VLIVYRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQ---YSSHQS 122
           +L+ YR K  GG  +      L  +  LA   G D +D E +   +I   Q       Q 
Sbjct: 63  LLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQY 122

Query: 123 GTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC--- 179
               I+S +    TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S     
Sbjct: 123 NKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDT 182

Query: 180 -QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231
               ++  S+ + GL+S+     F GAL YG +      G   V  L+    +
Sbjct: 183 MDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL 235

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Length = 252

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

 Score =  175 bits (445), Expect = 4e-53
 Identities = 54/251 (21%), Positives = 93/251 (37%), Gaps = 19/251 (7%)

Query: 1   MGVVNITKNTT------MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK 54
           M  V + KN         I   LM + +  V +     +    D++E R+D   +    +
Sbjct: 1   MKTVTV-KNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQ 59

Query: 55  DLEIILTK-----KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKV 108
            +             +P+L  +R    GG         L     A D G  D +D EL  
Sbjct: 60  SVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFT 119

Query: 109 ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT 167
               +      +H      ++S +   +TPS E++   + +MQA GADI K+        
Sbjct: 120 GDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKH 179

Query: 168 EIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTV 222
           ++  +              P+I  S+ + G++S+L    F  A  +G++K     G   V
Sbjct: 180 DVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAV 239

Query: 223 ESLRQTYKVEH 233
             LR    + H
Sbjct: 240 NDLRSVLMILH 250

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (257), Expect = 1e-27
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 236 ADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGF 293
           A  ++ GL++ P+ HS  P + N           Y+   VD            +    G 
Sbjct: 1   AKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGT 60

Query: 294 SVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337
            V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNT
Sbjct: 61  GVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNT 102

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  102 bits (255), Expect = 2e-27
 Identities = 48/106 (45%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVP--MFVDDLKKFFSTYSSPDFA 291
           INA TKV GLI  PV HS  PI+HN  F+    N +YV   +  ++LK       +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337
           GF+V  P+K  +MK+ DE+   AQ I AVNTI     DGK IGYNT
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNT 110

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score =  100 bits (251), Expect = 7e-27
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 296
            ++ +   P+  SK P++ N      +    Y+    D    ++    +      G ++ 
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337
            P+KE   +  DE    A+   A NT+ +   DGKL   NT
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNT 101

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

 Score = 97.3 bits (242), Expect = 2e-25
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 234 INADTKVF-GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 292
           IN DT++   L  +P   + G   HN  +  +  N IY      D++       +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337
            +V  P+KE  M F DE+HP AQAI +VNTI+    +G L  YNT
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNT 102

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

 Score = 96.7 bits (240), Expect = 2e-25
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 296
           + + +   P+ HSK P +H    + +N    Y  +     D     + + S    G +V 
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337
            P+KE      DE+   A    AVNT++R   DG+L+G NT
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNT 101

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400
           +G++ V  G G  G A+    K  G  V+  D+ 
Sbjct: 2   SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLS 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	100.0
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	100.0
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	100.0
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	100.0
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	100.0
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.98
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.97
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.6
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.15
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.49
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.18
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.89
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.72
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.48
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	95.15
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	94.98
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.84
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.77
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.75
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.74
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.74
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.69
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.61
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.57
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.46
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.41
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.4
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.4
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.31
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.23
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.22
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.2
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.13
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.98
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.81
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.73
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.7
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.63
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.55
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.47
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.43
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.33
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	93.08
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.96
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.95
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.85
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.8
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	92.79
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.79
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.75
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.74
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.67
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.67
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	92.48
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	92.37
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.3
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.25
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.12
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.02
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.88
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	91.82
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	91.73
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.73
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.7
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.66
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.56
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	91.55
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	91.37
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.35
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.33
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.14
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	91.04
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.51
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	90.27
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	90.15
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.09
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	90.03
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	89.28
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	88.96
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.96
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.86
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.75
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	88.57
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.5
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	88.47
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	88.37
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.25
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	88.14
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	87.99
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	87.78
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.61
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	87.39
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	87.24
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	86.89
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	86.84
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	86.51
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.08
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	86.01
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	85.81
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	85.7
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	85.28
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	85.2
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	84.92
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.82
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	84.6
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	84.47
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	83.96
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.89
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	83.79
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	83.59
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	83.55
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	83.24
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	83.09
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	83.05
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.66
d2g0wa1	275	Hypothetical protein Lmo2234 {Listeria monocytogen	82.14
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.89
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	81.34
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	80.97
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	80.29

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=100.00  E-value=4.7e-57  Score=427.24  Aligned_cols=229  Identities=23%  Similarity=0.330  Sum_probs=208.4

Q ss_pred             cCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCch----HHHHHHhcC-CCcEEEEeecCCCCCC
Q 015614            5 NITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK----DLEIILTKK-PLPVLIVYRPKWAGGL   79 (403)
Q Consensus         5 ~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~----~l~~l~~~~-~~PiI~T~R~~~eGG~   79 (403)
                      .+..++|+|||||++++.+|+++++..+...|||+||||+|+|.+..+.+    .+..+++.. ++|+|||+|+++|||.
T Consensus        10 ~~g~g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~   89 (252)
T d1gqna_          10 IIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGE   89 (252)
T ss_dssp             EETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCS
T ss_pred             EecCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCC
Confidence            35578999999999999999999999988899999999999998765433    344555554 6999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC-CcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614           80 YEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (403)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv  157 (403)
                      +++++++|+++|+.++++| +||||||++..++.+++++ ..++.++++|+|||||++||+.+++.+++++|.++||||+
T Consensus        90 ~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~gaDiv  169 (252)
T d1gqna_          90 QTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIP  169 (252)
T ss_dssp             BCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred             CCCCHHHHHHHHHHHHHcCCCceEeccccccHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHhCCCeE
Confidence            9999999999999999999 9999999999988777776 4467899999999999999999999999999999999999


Q ss_pred             EEEeecCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614          158 KLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (403)
Q Consensus       158 Kia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~  232 (403)
                      |+|+|+++.+|++++++++.+     .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++++.+
T Consensus       170 Kia~~a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tya~~~~~sAPGQ~~~~~l~~~l~~l  249 (252)
T d1gqna_         170 KIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMIL  249 (252)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTTTTHHHHHCHHHHTCCEEECBSSSCCSTTCCBHHHHHHHHHHH
T ss_pred             EEEecCCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcchhHHHHHHHhCCceEeccCCCCCCCCCCCHHHHHHHHHHH
Confidence            999999999999999988643     378999999999999999999999999999999999999999999999999865


Q ss_pred             c
Q 015614          233 H  233 (403)
Q Consensus       233 ~  233 (403)
                      +
T Consensus       250 ~  250 (252)
T d1gqna_         250 H  250 (252)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.1e-51  Score=383.78  Aligned_cols=218  Identities=22%  Similarity=0.362  Sum_probs=185.0

Q ss_pred             eEEEecccC-CHHHHH-HHHHHHHhcCCCEEEEEecCCCCCCCc---hHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHH
Q 015614           12 MICAPLMAQ-SVEQVL-SNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEH   85 (403)
Q Consensus        12 ~icv~l~~~-~~~e~~-~~~~~~~~~~~D~vElRlD~l~~~~~~---~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~   85 (403)
                      .||+|++.. +.++.+ ++++. ...++|+||||+|+|.+.+..   +.+..+++. .++|+|+|+|+++|||.++.+++
T Consensus         3 ~~~~~~~~~~~~e~~~~~~~~~-~~~~~D~vElRlD~l~~~~~~~v~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~   81 (236)
T d1sfla_           3 EVVATITPQLSIEETLIQKINH-RIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTND   81 (236)
T ss_dssp             EEEEEECCCC---CHHHHHHHH-TTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHH
T ss_pred             cEEEecCCchhHHHHHHHHHHh-cCcCCCEEEEEeccccCCCHHHHHHHHHHHHhcCCCCcEEEEEeCHHHCCCCCCCHH
Confidence            589999988 556654 44444 456899999999999987543   223333332 37899999999999999999999


Q ss_pred             HHHHHHHHHHHcC-CcEEEEeccccchHH--HHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015614           86 KRLEALHLAEDLG-ADYVDFELKVASNIL--GKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF  161 (403)
Q Consensus        86 ~~~~ll~~~~~~g-~~yvDiEl~~~~~~~--~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~  161 (403)
                      +|+++++.+++.+ +||||||+..+.+..  .++. ..++.+++||+|||||++||+.+++.+++++|.++||||+|+|+
T Consensus        82 ~~~~ll~~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~~~~vI~S~H~f~~TP~~~el~~~~~~~~~~gaDivKia~  161 (236)
T d1sfla_          82 SYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAV  161 (236)
T ss_dssp             HHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             HHHHHHHHHHHhcCCchhhhhhcchhhHHHHHHHHHHhhcCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            9999999998875 999999999876532  2232 45678999999999999999999999999999999999999999


Q ss_pred             ecCCHhHHHHHHHHhcc----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhh
Q 015614          162 SVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK  230 (403)
Q Consensus       162 ~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~  230 (403)
                      |+++.+|++++++++.+    .+.|+|+||||+.|++||++++.|||++||+++++++||||+++++|+++++
T Consensus       162 ~~~~~~D~~~ll~~~~~~~~~~~~pii~~~MG~~G~~sRi~~~~~GS~~tya~~~~~sAPGQ~~~~~lr~~l~  234 (236)
T d1sfla_         162 MPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVT  234 (236)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCCSSTTCCBHHHHHHHHT
T ss_pred             ecCCHHHHHHHHHHHHHHhhccCCCEEEEecCCcchHHHHHHHHhCCceEEccCCCCCCCCCcCHHHHHHHHh
Confidence            99999999999998653    3789999999999999999999999999999999999999999999999875

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=2e-35  Score=240.63  Aligned_cols=99  Identities=23%  Similarity=0.392  Sum_probs=94.5

Q ss_pred             ceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHh
Q 015614          238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ  315 (403)
Q Consensus       238 ~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  315 (403)
                      |++|||||+||+||+||.|||.+|+++|+++.|.++++  ++++++++.+++.+|.|+|||||||+++++++|++|+.|+
T Consensus         1 M~~~~viG~PI~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1p77a2           1 MDLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAK   80 (101)
T ss_dssp             CEEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHhccccceeeccHHHHHHHHHhccCCHHHH
Confidence            47899999999999999999999999999999999987  6899999999888999999999999999999999999999


Q ss_pred             hccceeEEEEeccCCeEEEEec
Q 015614          316 AIAAVNTIIRRPSDGKLIGYNT  337 (403)
Q Consensus       316 ~igavNTi~~~~~~g~l~G~NT  337 (403)
                      .+||||||++++ ||+|+||||
T Consensus        81 ~igAvNti~~~~-~g~l~G~NT  101 (101)
T d1p77a2          81 LAEACNTLKKLD-DGKLYADNT  101 (101)
T ss_dssp             HHTCCSEEEECT-TSCEEEECC
T ss_pred             HcCeeEEEEECC-CCEEEEecC
Confidence            999999999873 899999999

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-35  Score=240.60  Aligned_cols=99  Identities=29%  Similarity=0.510  Sum_probs=94.5

Q ss_pred             ceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHh
Q 015614          238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ  315 (403)
Q Consensus       238 ~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  315 (403)
                      |++|||||+||+||+||.|||.+|+++|+|+.|.++++  +++.++++.++..+|.|+|||||||+++++++|++|+.|+
T Consensus         1 M~~~~liG~pi~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1nyta2           1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAA   80 (101)
T ss_dssp             CCSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCcchhhhhcCChHhHHHHHHHhhhccchhheeehHHHHHHHHHhccCChHHH
Confidence            46899999999999999999999999999999999987  6899999999889999999999999999999999999999


Q ss_pred             hccceeEEEEeccCCeEEEEec
Q 015614          316 AIAAVNTIIRRPSDGKLIGYNT  337 (403)
Q Consensus       316 ~igavNTi~~~~~~g~l~G~NT  337 (403)
                      .+||||||++. +||+|+||||
T Consensus        81 ~igAvNti~~~-~~g~l~G~NT  101 (101)
T d1nyta2          81 LAGAVNTLMRL-EDGRLLGDNT  101 (101)
T ss_dssp             HHTCCSEEEEC-TTSCEEEECC
T ss_pred             HhCcEEEEEEC-CCCeEEEeCC
Confidence            99999999987 3899999999

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-35  Score=239.52  Aligned_cols=99  Identities=29%  Similarity=0.517  Sum_probs=95.3

Q ss_pred             cceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHH
Q 015614          237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLA  314 (403)
Q Consensus       237 ~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  314 (403)
                      +.++|||||+||+||+||.|||.+|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||+++++++|++|+.|
T Consensus         2 k~~l~GliG~Pi~hS~SP~ihn~~f~~~gi~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a   81 (102)
T d1vi2a2           2 KYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAA   81 (102)
T ss_dssp             CCEEEEEEESCCTTCSHHHHHHHHHHHTTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSTTGGGGGCSEECHHH
T ss_pred             CeEEEEEEcCCcccccCHHHHHHHHHHcCCCcEEeeEeeCchHHHHHHHHhhhhccchhhhhhHHHHHHHHhcccCCHHH
Confidence            468999999999999999999999999999999999988  589999999988899999999999999999999999999


Q ss_pred             hhccceeEEEEeccCCeEEEEec
Q 015614          315 QAIAAVNTIIRRPSDGKLIGYNT  337 (403)
Q Consensus       315 ~~igavNTi~~~~~~g~l~G~NT  337 (403)
                      +.+||||||+++  +|+|+||||
T Consensus        82 ~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1vi2a2          82 KLVGAINTIVND--DGYLRGYNT  102 (102)
T ss_dssp             HHHTCCSEEEEE--TTEEEEECH
T ss_pred             HhhCcEEEEEEE--CCEEEEeCC
Confidence            999999999987  999999998

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.98  E-value=2.8e-33  Score=231.13  Aligned_cols=103  Identities=48%  Similarity=0.684  Sum_probs=98.0

Q ss_pred             cccccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccC
Q 015614          233 HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEV  310 (403)
Q Consensus       233 ~~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~  310 (403)
                      .++..+++|||||+||+||+||.|||.+|+++|+++.|.++++  ++++.+++.+++.+|.|+|||||||++++++||++
T Consensus         6 mi~~~tk~~gliG~pi~~S~SP~ihn~~~~~~gi~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~   85 (110)
T d1nvta2           6 MINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEI   85 (110)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEE
T ss_pred             ccCCCccEEEEEcCCcccccCHHHHHHHHHHcCCcEEEeecccCHHHHHHHHHhhcccCcchhheehHHHHHHHHHhccC
Confidence            4667789999999999999999999999999999999999987  47899999998889999999999999999999999


Q ss_pred             CHHHhhccceeEEEEeccCCeEEEEec
Q 015614          311 HPLAQAIAAVNTIIRRPSDGKLIGYNT  337 (403)
Q Consensus       311 ~~~A~~igavNTi~~~~~~g~l~G~NT  337 (403)
                      |+.|+.+||||||+++  +|+|+||||
T Consensus        86 s~~a~~igavNti~~~--~~~l~G~NT  110 (110)
T d1nvta2          86 DKDAQLIGAVNTIKIE--DGKAIGYNT  110 (110)
T ss_dssp             CHHHHHHTCCCEEEEE--TTEEEEECC
T ss_pred             CHHHHHhCcEEEEEEE--CCEEEEeCC
Confidence            9999999999999997  899999999

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=6.8e-32  Score=219.79  Aligned_cols=100  Identities=37%  Similarity=0.596  Sum_probs=95.1

Q ss_pred             ccccceEE-eeeccCCcccCCHHHHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614          234 INADTKVF-GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (403)
Q Consensus       234 ~~~~~~~~-~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~  312 (403)
                      ++++|+.| +++|+|  ||+||.|||++|+++|+|+.|.++++++++++++.++..+|.|+|||||||+.+++++|++|+
T Consensus         2 i~~~t~~~~~i~g~P--~s~SP~ihn~~~~~~gi~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~s~   79 (102)
T d1npya2           2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHP   79 (102)
T ss_dssp             CCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECH
T ss_pred             cCCCCEEEEEEcCCc--ccCCHHHHHHHHHHcCCCeEEeeEecccHHHHHHHHhccccceeEEehhHHHHHHHHhhhCCh
Confidence            45678885 899999  889999999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHhhccceeEEEEeccCCeEEEEec
Q 015614          313 LAQAIAAVNTIIRRPSDGKLIGYNT  337 (403)
Q Consensus       313 ~A~~igavNTi~~~~~~g~l~G~NT  337 (403)
                      .|+.+||||||+++  +|+|+||||
T Consensus        80 ~a~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1npya2          80 SAQAIESVNTIVND--NGFLRAYNT  102 (102)
T ss_dssp             HHHTTTCCCEEEEE--TTEEEEECH
T ss_pred             hhhhcCcEEEEEEE--CCEEEEeCC
Confidence            99999999999987  899999998

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.60  E-value=2.4e-05  Score=66.38  Aligned_cols=38  Identities=24%  Similarity=0.469  Sum_probs=35.1

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .+++++++|+|+|++|+.++..|...|+ +|+|+|||.+
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~   59 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYE   59 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHH
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHH
Confidence            4678999999999999999999999999 8999999854

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00021  Score=54.47  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +++||+++|+|.|.++++++..|.+.|++|++++...
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            4679999999999999999999999999999998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.49  E-value=0.0015  Score=58.83  Aligned_cols=54  Identities=22%  Similarity=0.367  Sum_probs=42.5

Q ss_pred             EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          335 YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       335 ~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      -|-|+..++...+..+.            .....|+|+|||||-+|.++|+.|++.|.+|+|+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~------------~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1           9 QENDYEEFLEIARNGLK------------ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             CCTTHHHHHHHHHHCSC------------CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCccHHHHHHHHhcCCC------------CCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            46677887776554432            1223579999999999999999999999999999875

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0028  Score=54.16  Aligned_cols=36  Identities=36%  Similarity=0.591  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ...|+++|+|+|.|+.++++.|++.|.+|+|+.++.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            356899999999999999999999999999999875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.89  E-value=0.0051  Score=48.06  Aligned_cols=37  Identities=24%  Similarity=0.336  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +++||+++|+|+|..|.+-+..|.+.|++|+|++.+.
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            4679999999999999999999999999999988654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.72  E-value=0.0033  Score=57.30  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..++||++||-| +||.|+|++..|++.|++|++.+|+.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            468999999998 59999999999999999999999974

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.0069  Score=50.54  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=33.5

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      .|.+++|+|+||.+..++..++.+|++|+++.++++|
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k   63 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhH
Confidence            5889999999999999999888899999999998775

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=95.15  E-value=0.24  Score=43.81  Aligned_cols=153  Identities=20%  Similarity=0.221  Sum_probs=93.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCc-hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHH---HHHH
Q 015614           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE---ALHL   93 (403)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~---ll~~   93 (403)
                      ..+++++.    .+.+.|||-|||.-++-. .+.|. ..++.+++..++|+-+-+|++  ||.|-.++++...   -++.
T Consensus         7 v~s~~~a~----~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~iPv~vMIRPR--~GdF~Ys~~E~~~M~~di~~   80 (247)
T d1twda_           7 CYSMECAL----TAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPR--GGDFCYSDGEFAAILEDVRT   80 (247)
T ss_dssp             ESSHHHHH----HHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSS--SSCSCCCHHHHHHHHHHHHH
T ss_pred             eCCHHHHH----HHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHHH
Confidence            35566654    455789999999977644 33443 356677778899999999975  6777777755443   3556


Q ss_pred             HHHcCCcEEEEecc-----ccchHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeec--CC
Q 015614           94 AEDLGADYVDFELK-----VASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSV--ND  165 (403)
Q Consensus        94 ~~~~g~~yvDiEl~-----~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~~--~~  165 (403)
                      +.++|++.|=+=.-     .+.+..++|... .++.+  +.||- |+.++++   .+-++.+.++|.+  .|-+..  .+
T Consensus        81 ~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~-a~~l~--vTFHRAfD~~~d~---~~al~~Li~lG~~--rILTSGg~~~  152 (247)
T d1twda_          81 VRELGFPGLVTGVLDVDGNVDMPRMEKIMAA-AGPLA--VTFHRAFDMCANP---LYTLNNLAELGIA--RVLTSGQKSD  152 (247)
T ss_dssp             HHHTTCSEEEECCBCTTSSBCHHHHHHHHHH-HTTSE--EEECGGGGGCSCH---HHHHHHHHHHTCC--EEEECTTSSS
T ss_pred             HHHcCCCeEEEEEECCCCCccHHHHHHHHHH-hcccC--eeeehhhhhhCCH---HHHHHHHHhcCCC--eEeccCCCCc
Confidence            77889998876322     223455666633 23444  45675 8888864   4445666667754  344443  34


Q ss_pred             HhHHHHHHHH-hccCCCCEEE
Q 015614          166 ITEIARIFQL-LSHCQVPIIA  185 (403)
Q Consensus       166 ~~D~~~ll~~-~~~~~~p~i~  185 (403)
                      ..|....++- ....+.++|.
T Consensus       153 a~~G~~~L~~L~~~a~~~iIm  173 (247)
T d1twda_         153 ALQGLSKIMELIAHRDAPIIM  173 (247)
T ss_dssp             TTTTHHHHHHHHTSSSCCEEE
T ss_pred             hhHHHHHHHHHHHhcCCcEEE
Confidence            4454444433 3444444443

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=94.98  E-value=0.21  Score=42.62  Aligned_cols=152  Identities=13%  Similarity=0.130  Sum_probs=86.0

Q ss_pred             ecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCch---HHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614           16 PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (403)
Q Consensus        16 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (403)
                      .||.++..+....++++++.|+++|.+|.=.+...+..+   .+..+-+..+.|+|+.-+                  ++
T Consensus        10 ~ITd~~~~~~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~liind~------------------~~   71 (206)
T d1xi3a_          10 VITDRRLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDR------------------VD   71 (206)
T ss_dssp             EECCTTTSCHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC------------------HH
T ss_pred             EEeCCcccCHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEechh------------------HH
Confidence            345555555667788888999999999965444321112   233333456889998622                  23


Q ss_pred             HHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC--Hh---
Q 015614           93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND--IT---  167 (403)
Q Consensus        93 ~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~--~~---  167 (403)
                      .+.+++++.|=+.-+.........   ..++.-+..|.|+      .++    +.++...|+|.+=+-..-.|  ..   
T Consensus        72 lA~~~~adGvHl~~~~~~~~~~~~---~~~~~iig~s~h~------~~e----~~~a~~~g~DYi~~gpvf~T~tk~~~~  138 (206)
T d1xi3a_          72 VALAVDADGVQLGPEDMPIEVAKE---IAPNLIIGASVYS------LEE----ALEAEKKGADYLGAGSVFPTKTKEDAR  138 (206)
T ss_dssp             HHHHHTCSEEEECTTSCCHHHHHH---HCTTSEEEEEESS------HHH----HHHHHHHTCSEEEEECSSCC----CCC
T ss_pred             HHHhccCceEeeccccccHhhhhh---cccccccccccCC------HHH----HHHHHhcCCCEEEeccccccccccccc
Confidence            456778998877544332111111   1345566778886      233    34455679998876543222  21   


Q ss_pred             --HHHHHHHHhccCCCCEEEEEcCccchhhhhh
Q 015614          168 --EIARIFQLLSHCQVPIIAYSVGERGLVSQLL  198 (403)
Q Consensus       168 --D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil  198 (403)
                        ....+-++....+.|+++++==..-.+..++
T Consensus       139 ~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~  171 (206)
T d1xi3a_         139 VIGLEGLRKIVESVKIPVVAIGGINKDNAREVL  171 (206)
T ss_dssp             CCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHH
T ss_pred             cccHHHHHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence              3344444455567898876533334444443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.84  E-value=0.007  Score=51.09  Aligned_cols=37  Identities=32%  Similarity=0.386  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .+|.+++|+|+|+.|..++..++..|+ +|+++.++++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccc
Confidence            358999999999999999999999999 8999988754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.77  E-value=0.041  Score=47.47  Aligned_cols=54  Identities=28%  Similarity=0.439  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      +.|...+++..+...+        ...++|++++|-|-|.+|+.++..|.+.|++|++++.+
T Consensus         6 a~Gv~~~~~~~~~~~g--------~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1           6 AVGVFEAMKATVAHRG--------LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             HHHHHHHHHHHHHHTT--------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHHHHHHHHhC--------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            5788888887665322        12588999999999999999999999999999888765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.75  E-value=0.014  Score=48.31  Aligned_cols=36  Identities=31%  Similarity=0.487  Sum_probs=32.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|.+++|+|+|+.+..++..++..|++|.++.++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            578999999999999999999999999998888754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.74  E-value=0.013  Score=49.35  Aligned_cols=38  Identities=34%  Similarity=0.595  Sum_probs=34.4

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .+|.+++|+|+||.+..++..++.+|+ +|++++++.+|
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            458899999999999999999999998 89999988765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.74  E-value=0.016  Score=47.94  Aligned_cols=36  Identities=31%  Similarity=0.306  Sum_probs=32.4

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .+.+++|+|+|+.+..++..++..|++|+++.++.+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            578999999999999999999999999999988754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.69  E-value=0.022  Score=45.00  Aligned_cols=35  Identities=26%  Similarity=0.232  Sum_probs=32.1

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ++++++|+|+|-+|.-++.+|.++|.+|+++.|..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            46899999999999999999999999999998853

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.61  E-value=0.018  Score=50.24  Aligned_cols=35  Identities=23%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..++++|+|+|-++.++|..|++.|.+++|+.++.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            56899999999999999999999999999998764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.0069  Score=53.77  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      ++++|+|+|+||.|-.++..|+..|+ +|++++.+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            36799999999999999999999999 99999854

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.46  E-value=0.027  Score=44.44  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=31.7

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +++++|+|+|-+|--++.+|.+.|.+|+++.|..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            5899999999999999999999999999998864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.023  Score=44.28  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++|+|+|-+|--.+..|.++|.+|+|+.|..
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            3789999999999999999999999999999864

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.40  E-value=0.025  Score=44.00  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=31.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++|+|+|-.|--++..|.++|.+|+|+.|..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            3789999999999999999999999999998864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.40  E-value=0.014  Score=49.08  Aligned_cols=38  Identities=26%  Similarity=0.422  Sum_probs=34.1

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      ..|.+++|+|+||.+..++..++.+|+ +|++++++.+|
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            458899999999999999999999998 89999988764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.043  Score=45.75  Aligned_cols=39  Identities=38%  Similarity=0.566  Sum_probs=35.9

Q ss_pred             CCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       363 ~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +..+.||+++|+|-|-.+|.+|..|+.+|++|.++.+++
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            356789999999999999999999999999999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.23  E-value=0.011  Score=49.85  Aligned_cols=36  Identities=33%  Similarity=0.353  Sum_probs=32.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      +|.+++|+|+||.+..++..++.+|+ +|++++++.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            57899999999999999999999999 8999988754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.22  E-value=0.02  Score=48.10  Aligned_cols=38  Identities=29%  Similarity=0.450  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      ..|.+|+|+|+||.+..++..++..|+ +|++.+++.+|
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            358899999999999999999999999 89999987654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.025  Score=46.90  Aligned_cols=37  Identities=32%  Similarity=0.449  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      ..+.+++|+|+|+.+..++..++..|+ +|++++++.+
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            357899999999999999999999999 8999988754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.13  E-value=0.026  Score=44.23  Aligned_cols=34  Identities=21%  Similarity=0.157  Sum_probs=31.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++|+|+|-.|--++.+|+.+|.+|+|+.|..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            4789999999999999999999999999999853

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.98  E-value=0.032  Score=43.95  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++|+|+|-.|--++..|.++|++|+|+.|..
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            3799999999999999999999999999998864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.81  E-value=0.027  Score=46.89  Aligned_cols=38  Identities=32%  Similarity=0.562  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .+|.+++|+|+||.+..++..++..|+ +|.++.++.+|
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            468899999999999999999999998 89999988664

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.73  E-value=0.035  Score=43.61  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +++++|+|+|-+|--++.+|.++|.+|+++.|.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            4789999999999999999999999999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.032  Score=46.18  Aligned_cols=36  Identities=31%  Similarity=0.370  Sum_probs=30.8

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      .|++++|+|+||.+..++..++..|++++++.++.+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            588999999999999999888899997667777654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.04  Score=43.46  Aligned_cols=34  Identities=18%  Similarity=0.054  Sum_probs=31.5

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .|+++|+|+|-.|--++..|+++|.+|+++.|..
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            3799999999999999999999999999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.55  E-value=0.03  Score=46.65  Aligned_cols=37  Identities=16%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCC--eEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~--~i~v~nR~~  401 (403)
                      ...++++.|+|+|..|.+++|.|...|.  +|.+++++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3456799999999999999999999995  899999864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.47  E-value=0.035  Score=43.07  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++|+|+|-+|--+|.+|+++|++|+++.|..
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            3789999999999999999999999999998863

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.43  E-value=0.048  Score=43.54  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++|+|+|-+|--++..|.++|.+|+|+.|..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            36899999999999999999999999999998863

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.33  E-value=0.052  Score=42.41  Aligned_cols=34  Identities=24%  Similarity=0.158  Sum_probs=31.4

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++|+|+|-.|--.+..|+++|++|+|+.|..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            4789999999999999999999999999999863

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.08  E-value=0.26  Score=42.91  Aligned_cols=75  Identities=19%  Similarity=0.173  Sum_probs=49.4

Q ss_pred             HHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeec--CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614           29 MYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRP--KWAGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~--~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl  106 (403)
                      ++.+.+.|+|.||+|-+++......+.++.+.+...+++....-.  ..+.+..   .+...+.++.+.++|+.+|-+..
T Consensus        25 l~~~a~~G~dgIEi~~~~~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~~~~~~---~~~~~~~i~~A~~LG~~~v~~~~  101 (250)
T d1yx1a1          25 LPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQL---NPELEPTLRRAEACGAGWLKVSL  101 (250)
T ss_dssp             HHHHHHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTSSB---CTTHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHhCCCEEEEecccCCCcchHHHHHHHHHHcCCEEEEecccccccCchhh---HHHHHHHHHHHHHhCCCEEEEee
Confidence            455567899999999988776554556777777788887543321  1222221   23445677888889988887654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.96  E-value=0.08  Score=43.97  Aligned_cols=39  Identities=36%  Similarity=0.540  Sum_probs=35.8

Q ss_pred             CCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       363 ~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +..+.||+++|+|-|-.+|.+|..|+.+|++|+|+.++|
T Consensus        18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            356789999999999999999999999999999998875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.95  E-value=0.031  Score=47.79  Aligned_cols=37  Identities=35%  Similarity=0.395  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      ..|.+++|+|+|+.+..++..++..|+ +|+++.++++
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            358899999999999999988888998 8999887654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.85  E-value=0.035  Score=46.51  Aligned_cols=36  Identities=36%  Similarity=0.413  Sum_probs=32.5

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +..+++|||+|-+++.++...+.+|++|++++++.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            457899999999999999999999999999998643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.80  E-value=0.075  Score=41.16  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=32.2

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .+++++|+|+|-.|--.+..|+++|.+++++.|..
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            47899999999999999999999999999998864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.79  E-value=0.074  Score=44.91  Aligned_cols=36  Identities=22%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +.|+++.|+|.|..|+.++.-+..+|++|+.++|++
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeeccccccccccccc
Confidence            689999999999999999999999999999999975

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.79  E-value=0.068  Score=43.63  Aligned_cols=36  Identities=33%  Similarity=0.416  Sum_probs=31.7

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ++++++|.|+|+.+.+++..++..|++|+++.++++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            578999999999999999999999999988887654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.75  E-value=0.039  Score=45.62  Aligned_cols=38  Identities=34%  Similarity=0.566  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .+|.+++|.|+||.+..++..++.+|+ .|+++.++++|
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH
Confidence            358899999999999999999999998 78888877553

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.74  E-value=0.057  Score=42.44  Aligned_cols=33  Identities=15%  Similarity=-0.032  Sum_probs=30.5

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      .++++|+|+|-.|--.|..|.++|++|+|+-|+
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            368999999999999999999999999999876

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.67  E-value=0.052  Score=44.95  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .|.+++|+|+|+.+..++..++..|+ .|+++.++.+
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~   68 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE   68 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH
Confidence            47899999999999999888888898 8888887653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.67  E-value=0.075  Score=45.03  Aligned_cols=36  Identities=31%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      ..+++|||+|-++..++.....+|+.|++++.+.++
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~   64 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT   64 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH
Confidence            468999999999999999999999999999987653

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=92.48  E-value=1.1  Score=38.41  Aligned_cols=140  Identities=19%  Similarity=0.178  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc---CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK---KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~---~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (403)
                      .+.+++....+++.+.+..+|=+.        | ..+...++.   +++ -+.|+=.=+.|..   +-+.+..-.+.+++
T Consensus        15 ~T~~~i~~lc~~A~~~~~~aVcV~--------P-~~v~~a~~~l~~s~v-~v~~VigFP~G~~---~~~~k~~e~~~ai~   81 (211)
T d1ub3a_          15 ATLEEVAKAAEEALEYGFYGLCIP--------P-SYVAWVRARYPHAPF-RLVTVVGFPLGYQ---EKEVKALEAALACA   81 (211)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEECC--------G-GGHHHHHHHCTTCSS-EEEEEESTTTCCS---CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCeEEEEC--------H-HHHHHHHHHccCCCC-ceEEEEecccccC---cHHHHHHHHHHHHH
Confidence            357888888888888877766442        2 234444332   333 3445544444443   34667777789999


Q ss_pred             cCCcEEEEecccc----------chHHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe----
Q 015614           97 LGADYVDFELKVA----------SNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF----  161 (403)
Q Consensus        97 ~g~~yvDiEl~~~----------~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~----  161 (403)
                      .|++-||+=++..          .+.++++.. .+....|+|+-.+.+    +.+++....+-+.+.|+|++|--+    
T Consensus        82 ~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L----~~~ei~~a~~~a~~aGadfiKTSTG~~~  157 (211)
T d1ub3a_          82 RGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYF----SPEEIARLAEAAIRGGADFLKTSTGFGP  157 (211)
T ss_dssp             TTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGS----CHHHHHHHHHHHHHHTCSEEECCCSSSS
T ss_pred             cCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccC----CHHHHHHHHHHHHHhccceEEecCCCCC
Confidence            9999999865442          122334443 233456999988865    357888888889999999999854    


Q ss_pred             ecCCHhHHHHHHHHh
Q 015614          162 SVNDITEIARIFQLL  176 (403)
Q Consensus       162 ~~~~~~D~~~ll~~~  176 (403)
                      ...+++|+..+.+..
T Consensus       158 ~gat~e~v~~m~~~~  172 (211)
T d1ub3a_         158 RGASLEDVALLVRVA  172 (211)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHh
Confidence            345888988777664

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.37  E-value=1  Score=39.15  Aligned_cols=78  Identities=19%  Similarity=0.135  Sum_probs=46.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCC----CCchHHHHHHhcCCCcEEEEeecCCCCCCCCC-CH---HHHHHHH
Q 015614           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNF----QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEG-DE---HKRLEAL   91 (403)
Q Consensus        20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~-~~---~~~~~ll   91 (403)
                      =+++|.++.+   .+.|.|.|||+.|.....    ...++++.+.+...++++- +-.   ++.+.. .+   +.-.+++
T Consensus        18 l~lee~l~~a---~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~-l~~---~~~~~~~~~~~~~~~~~~i   90 (271)
T d2q02a1          18 LSIEAFFRLV---KRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVT-INA---VYPFNQLTEEVVKKTEGLL   90 (271)
T ss_dssp             SCHHHHHHHH---HHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEE-EEE---ETTTTSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHH---HHhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEEE-eec---ccccCCCCHHHHHHHHHHH
Confidence            3467776544   467999999998865432    2235677777777777552 211   112222 22   3334556


Q ss_pred             HHHHHcCCcEEEE
Q 015614           92 HLAEDLGADYVDF  104 (403)
Q Consensus        92 ~~~~~~g~~yvDi  104 (403)
                      +.|.++|+..|=+
T Consensus        91 ~~a~~lG~~~v~~  103 (271)
T d2q02a1          91 RDAQGVGARALVL  103 (271)
T ss_dssp             HHHHHHTCSEEEE
T ss_pred             HHHHHcCCcEEEE
Confidence            6777788877755

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.30  E-value=0.046  Score=42.97  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++|+|+|-.|--.+..+.++|++|+|+.|..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            3789999999999999999999999999999864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.25  E-value=0.035  Score=46.30  Aligned_cols=37  Identities=32%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      ..|.+++|+|+||.+.+++..++..|+ .|+++.++++
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~   64 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES   64 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH
Confidence            358899999999999999998889999 7788777643

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.12  E-value=0.1  Score=44.49  Aligned_cols=38  Identities=29%  Similarity=0.501  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|+++.|+|.|..|+.++..|..+|++|..++|..
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eeeeCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            45789999999999999999999999999999999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.02  E-value=0.071  Score=44.03  Aligned_cols=38  Identities=29%  Similarity=0.497  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT  403 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k  403 (403)
                      .+|.+++|+|+||.+-.++..++..|. +|++++++.+|
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            357899999999999999988998988 89999988664

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.88  E-value=0.086  Score=45.13  Aligned_cols=39  Identities=23%  Similarity=0.212  Sum_probs=34.9

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      ..+.++++.|+|.|..|+.++-.|+.+|++|+.++|...
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCccc
Confidence            456789999999999999999999999999999998643

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=91.82  E-value=1.9  Score=37.59  Aligned_cols=122  Identities=22%  Similarity=0.182  Sum_probs=76.7

Q ss_pred             HHHHHhcCCCEEEEEecCCCCCCCchHHH---HHHh---cCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015614           29 MYQAKAEGADVVEIRLDCINNFQPGKDLE---IILT---KKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV  102 (403)
Q Consensus        29 ~~~~~~~~~D~vElRlD~l~~~~~~~~l~---~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv  102 (403)
                      +++++..|+|+|=+.+.+-.+.+ .+.+.   ++.+   ..++|+++-..+...+-....+.+.-......+.++|+|.|
T Consensus        96 ve~a~rlGadaV~~~v~~g~~~e-~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDiv  174 (251)
T d1ojxa_          96 VEEAVSLGASAVGYTIYPGSGFE-WKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAM  174 (251)
T ss_dssp             HHHHHHTTCSEEEEEECTTSTTH-HHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEE
T ss_pred             HHHHHhchhceEEEEEeCCCCch-HHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEE
Confidence            34456789999999997654432 23333   3332   35999999887653222223344444444667889999999


Q ss_pred             EEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCC
Q 015614          103 DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGA  154 (403)
Q Consensus       103 DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~ga  154 (403)
                      =+++..+.+.+.+.... .....++++-=  .+..+.+++.+.++.+.+.||
T Consensus       175 K~~~p~~~~~~~~~v~~-a~~~pv~~~gG--~~~~~~~~~l~~~~~a~~~Ga  223 (251)
T d1ojxa_         175 KIKYTGDPKTFSWAVKV-AGKVPVLMSGG--PKTKTEEDFLKQVEGVLEAGA  223 (251)
T ss_dssp             EECCCSSHHHHHHHHHH-TTTSCEEEECC--SCCSSHHHHHHHHHHHHHTTC
T ss_pred             EecCCCcHHHHHHHHHh-cCCCceEEeCC--CCCCCHHHHHHHHHHHHHCCC
Confidence            99998876655554422 23445665532  233356778888888777786

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.73  E-value=0.063  Score=44.48  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=31.2

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCC--eEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~--~i~v~nR~~  401 (403)
                      .+..++.|+|+|..|.+++|.|...|.  +|.+++++.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            345689999999999999999999885  799999764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.056  Score=44.80  Aligned_cols=36  Identities=28%  Similarity=0.311  Sum_probs=30.4

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +|++++|.|+ |+.+.+++..++.+|++++++.++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~   64 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE   64 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccc
Confidence            5889999996 99999999999999998777766543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.70  E-value=0.081  Score=41.78  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++++|+|+|-.|--++.++.++|.+|+|+.|..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4799999999999999999999999999998864

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.66  E-value=0.16  Score=44.27  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      .+++..+++++|||.++-+++..|.+.|. ++++++|.
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            45777899999999999999999999998 89999985

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.56  E-value=0.14  Score=41.74  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      +..+++++|||+|-+|-=.+..+.++|+ +|+++-|.
T Consensus        42 p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          42 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             ccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            3446789999999999998888899999 79888874

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.55  E-value=1.5  Score=38.78  Aligned_cols=155  Identities=15%  Similarity=0.158  Sum_probs=96.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCCchHHHHHH---h-cCCCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEIIL---T-KKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (403)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~~l~---~-~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (403)
                      ..+.+++++.+++..+.|||.|.+=--.-.+    .+..+++.++.   + .....+++++-|.            +.+.
T Consensus        22 ~~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~~iSIDT~------------~~eV   89 (264)
T d1ad1a_          22 FNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVDTF------------RSEV   89 (264)
T ss_dssp             TCSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECS------------CHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCcccchhhh------------hHHH
Confidence            3467889999999999999999986655432    22234555443   1 2244556676653            4568


Q ss_pred             HHHHHHcCCcEEE-Ee-ccccchHHHHHHhccCCCcEEEEeccCCCCCCC----HhH----HHHHHHHHHHcCCCEEEEE
Q 015614           91 LHLAEDLGADYVD-FE-LKVASNILGKQYSSHQSGTRFIVSCNLDCETPS----EED----LGYLVSRMQATGADIIKLV  160 (403)
Q Consensus        91 l~~~~~~g~~yvD-iE-l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~----~~~----l~~~~~~~~~~gadivKia  160 (403)
                      .++|++.|+++|- |- ....++.. ++..  ..+..+|+-| . .++|.    ..+    +.+.++++...|.+--+|.
T Consensus        90 a~~al~~Ga~iINDVs~g~~d~~~~-~~va--~~~~~~ilmH-~-~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~Ii  164 (264)
T d1ad1a_          90 AEACLKLGVDIINDQWAGLYDHRMF-QVVA--KYDAEIVLMH-N-GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIW  164 (264)
T ss_dssp             HHHHHHTTCCEEEETTTTSSCTHHH-HHHH--HTTCEEEEEC-C-CCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred             HHHHHhcCCcEeeccccccccccHH-HHHh--hcCcceeeee-e-ccccccCccchhhhhHHHHHHHHHHhhccccceEE
Confidence            8899999999875 53 22233333 3432  3567788764 3 33442    222    4455667788887766787


Q ss_pred             e-----ecCCHhHHHHHHHHhc---cCCCCEEEEEcCcc
Q 015614          161 F-----SVNDITEIARIFQLLS---HCQVPIIAYSVGER  191 (403)
Q Consensus       161 ~-----~~~~~~D~~~ll~~~~---~~~~p~i~~~MG~~  191 (403)
                      .     ...+.+++++|++-+.   ..+.|+ .++....
T Consensus       165 lDPGiGFgKt~~~n~~ll~~l~~~~~~g~Pi-LiG~SRK  202 (264)
T d1ad1a_         165 LDPGIGFAKTRNEEAEVMARLDELVATEYPV-LLATSRK  202 (264)
T ss_dssp             EECCTTSSCCHHHHHHHHHCHHHHHTTCSCB-EECCTTS
T ss_pred             eccCcCccccchhHHHHHHHHHHhhccCCce-eeeccHH
Confidence            7     4479999999987654   346774 3343333

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.37  E-value=0.067  Score=38.81  Aligned_cols=38  Identities=26%  Similarity=0.238  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      .++.+++|.|+ ||++..++.-++.+|++|+.+.++++|
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            35788999985 889999888888999988887777653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.35  E-value=0.065  Score=40.99  Aligned_cols=36  Identities=8%  Similarity=0.167  Sum_probs=29.4

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEec
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR  399 (403)
                      .+++||+|+|+|+|-+|--++..|+..+.++++..|
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~   63 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL   63 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence            457899999999999999999999887766554444

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.33  E-value=0.075  Score=44.08  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +|++++|.|+ |+.+.+++..++..|++|+.+.++++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~   63 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE   63 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccccccc
Confidence            5889999996 88899999988999998877777654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.14  E-value=0.1  Score=44.66  Aligned_cols=38  Identities=21%  Similarity=0.333  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|+++.|+|.|..|+.++..|..+|++|..+++..
T Consensus        39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          39 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccccCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            45679999999999999999999999999999998764

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=91.04  E-value=0.3  Score=42.69  Aligned_cols=54  Identities=26%  Similarity=0.445  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHhc-CcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          339 CEASITAIEDAIKER-GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      +.|+..+++..+... +        ...++|++++|-|-|-+|+.++.-|.+.|++|++++.+
T Consensus        17 g~GV~~~~~~~~~~~~g--------~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          17 AYGVYRGMKAAAKEAFG--------SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             HHHHHHHHHHHHHHHHS--------SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             HHHHHHHHHHHHHHhcC--------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeeccc
Confidence            467777777655421 1        24588999999999999999999999999998887654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.51  E-value=0.14  Score=43.48  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..++||+|+|+|+|-+|-=+++.|.+.+.+++++-|+.
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            35789999999999999999999999998877777653

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.27  E-value=3.4  Score=36.07  Aligned_cols=149  Identities=12%  Similarity=0.054  Sum_probs=92.8

Q ss_pred             EEEeccc--CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614           13 ICAPLMA--QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (403)
Q Consensus        13 icv~l~~--~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (403)
                      |=-++-.  .+.+++....+++.+.+..+|=++--+.      .....+.+.+++.+ .|+=.=+.|-.   +-+.+..-
T Consensus        39 ID~TlL~p~~t~e~i~~lc~~A~~~~~aaVcV~P~~v------~~a~~~L~gs~v~v-~tVigFP~G~~---~~~~K~~E  108 (251)
T d1o0ya_          39 IEHTNLKPFATPDDIKKLCLEARENRFHGVCVNPCYV------KLAREELEGTDVKV-VTVVGFPLGAN---ETRTKAHE  108 (251)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHTTSCCEE-EEEESTTTCCS---CHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHHHHHHhhcCceEEEECHHHH------HHHHHHhcCCCceE-EeeccCCCCCC---cHHHHHHH
Confidence            3344443  3468888888888888877765522211      12333334455554 45533233222   34667766


Q ss_pred             HHHHHHcCCcEEEEecccc----------chHHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           91 LHLAEDLGADYVDFELKVA----------SNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        91 l~~~~~~g~~yvDiEl~~~----------~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      .+.+++.|++-||+=++..          .+.++.+.. .+....|+|+-...+    +.+++....+-+.+.|+|.+|-
T Consensus       109 a~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L----~~~e~~~a~~ia~~aGadfvKT  184 (251)
T d1o0ya_         109 AIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYL----DTEEKIAACVISKLAGAHFVKT  184 (251)
T ss_dssp             HHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGC----CHHHHHHHHHHHHHTTCSEEEC
T ss_pred             HHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeeccccc----CcHHHHHHHHHHHHhCcceeec
Confidence            7889999999999865542          122334442 344678888876643    4677888888888999999997


Q ss_pred             Ee----ecCCHhHHHHHHHH
Q 015614          160 VF----SVNDITEIARIFQL  175 (403)
Q Consensus       160 a~----~~~~~~D~~~ll~~  175 (403)
                      .+    ...+++|+..+.+.
T Consensus       185 STGf~~~gat~e~V~~m~~~  204 (251)
T d1o0ya_         185 STGFGTGGATAEDVHLMKWI  204 (251)
T ss_dssp             CCSSSSCCCCHHHHHHHHHH
T ss_pred             cCCCCCCCcCHHHHHHHHHH
Confidence            44    34578888666554

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=90.15  E-value=0.3  Score=42.92  Aligned_cols=49  Identities=22%  Similarity=0.316  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEE
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  396 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v  396 (403)
                      +.|...+++..+...+         ..++|++++|-|.|-+|..++..|.++|++|.-
T Consensus        11 g~Gv~~~~~~~~~~~~---------~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~   59 (242)
T d1v9la1          11 GFGVAVATREMAKKLW---------GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA   59 (242)
T ss_dssp             HHHHHHHHHHHHHHHH---------SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             hHHHHHHHHHHHHHcC---------CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            5678888777665322         357899999999999999999999999997643

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.26  Score=41.02  Aligned_cols=37  Identities=24%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecC
Q 015614          364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~  400 (403)
                      .+++||+++|+|.+. .+|.++.-|.+.|+.|++++.+
T Consensus        35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~   72 (170)
T d1a4ia1          35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK   72 (170)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cccccceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence            678999999999877 5999999999999999998864

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=1.1  Score=37.08  Aligned_cols=108  Identities=12%  Similarity=0.031  Sum_probs=69.7

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHH
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRL   88 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~   88 (403)
                      .|++|+.+-..++++++..+++. ...+|.+++.++++..... +.+..+++.. ..+++...-.. +      ....  
T Consensus         1 ~p~l~vAlD~~~~~~~~~~~~~~-~~~vdiikig~~~~~~~G~-~~i~~l~~~~~~~~i~~d~k~~-d------~~~~--   69 (213)
T d1q6oa_           1 LPMLQVALDNQTMDSAYETTRLI-AEEVDIIEVGTILCVGEGV-RAVRDLKALYPHKIVLADAKIA-D------AGKI--   69 (213)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHHHHCT-HHHHHHHHHCTTSEEEEEEEEC-S------CHHH--
T ss_pred             CCcEEEEecCCCHHHHHHHHHhc-CCCccEEEeCeeccccCCH-HHHHHHHHhcccccceeEEeec-c------chHH--
Confidence            58999999999999999988875 6689999999887754332 4677777765 55666554321 1      1111  


Q ss_pred             HHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEe
Q 015614           89 EALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVS  129 (403)
Q Consensus        89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S  129 (403)
                       ..+.+.+.|+|++-+-.....+..+... ..+..+.++.+.
T Consensus        70 -~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~  110 (213)
T d1q6oa_          70 -LSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIE  110 (213)
T ss_dssp             -HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             -HHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecc
Confidence             2234567789999886655444343333 223344555444

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.28  E-value=0.29  Score=41.09  Aligned_cols=38  Identities=29%  Similarity=0.387  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.++++.|+|.|..|+.++.-|...|++|+.++|+.
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          40 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccccceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            45678999999999999999999999999999999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.96  E-value=0.39  Score=36.90  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +.++.|||+|=-||-.+.+..++|+++.+++.+++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46899999999999999999999999999987653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.96  E-value=0.26  Score=42.26  Aligned_cols=37  Identities=30%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHH--------------------HCCC-eEEEEecC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAK--------------------SRGA-RVVIFDID  400 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~--------------------~~g~-~i~v~nR~  400 (403)
                      ..+.+++|+|||+|-+|.=++--|.                    +.|+ +|+++.|.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            3456899999999999988876554                    6788 89999985

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=0.08  Score=50.82  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~  400 (403)
                      ++.+|+|+|+||.|-.++..|...|+ +|+|++.+
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            35689999999999999999999999 99999864

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.75  E-value=0.18  Score=44.64  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=29.9

Q ss_pred             CCeEEEEcchhHHHHHHHHHHH-CCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKS-RGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~-~g~~i~v~nR~~  401 (403)
                      ...++|||||-++.++++.|++ .|.+|.|+.+.+
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            3569999999999999999986 699999999864

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.57  E-value=0.28  Score=42.40  Aligned_cols=38  Identities=18%  Similarity=0.060  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHH--------------------CCC-eEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKS--------------------RGA-RVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~--------------------~g~-~i~v~nR~~  401 (403)
                      ..+.+++|+|||+|-+|.=++-.|.+                    .|+ +|+++.|..
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            34678999999999999988887766                    688 899999853

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.50  E-value=0.12  Score=42.41  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~-~i~v~nR~~~  402 (403)
                      .+.+++|+|+ |+.+..++..++..|+ +|+++.++.+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~   64 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE   64 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchh
Confidence            5789999995 8899999988888897 8999987753

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.47  E-value=0.19  Score=47.10  Aligned_cols=33  Identities=30%  Similarity=0.360  Sum_probs=29.3

Q ss_pred             CeEEEEcchhHHHHHHHHHHH------CCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKS------RGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~------~g~~i~v~nR~~  401 (403)
                      --|+|+|+|.|+.++|+.|++      .|.+|.|+.|..
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            369999999999999999997      688999998853

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=88.37  E-value=0.4  Score=42.49  Aligned_cols=48  Identities=27%  Similarity=0.346  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV  395 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~  395 (403)
                      +.|.+.+++..+.+.         +..+++++++|=|.|-+|+.++..|.+.|++|.
T Consensus        16 G~Gv~~~~~~~~~~~---------~~~l~g~~v~IQGfGnVG~~~a~~L~e~Gakvv   63 (255)
T d1bgva1          16 GYGSVYYVEAVMKHE---------NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAV   63 (255)
T ss_dssp             HHHHHHHHHHHHHHT---------TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEE
T ss_pred             hHHHHHHHHHHHHhC---------CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEE
Confidence            568888888877632         256789999999999999999999999999654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=88.25  E-value=0.49  Score=39.12  Aligned_cols=48  Identities=19%  Similarity=0.193  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecC
Q 015614          340 EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       340 ~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~  400 (403)
                      .|++.-|++.             +.++.||+++|+|.+. .+|.++.-|.+.|+.|++++..
T Consensus        22 ~aI~~lL~~y-------------~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~   70 (166)
T d1b0aa1          22 RGIVTLLERY-------------NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF   70 (166)
T ss_dssp             HHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred             HHHHHHHHHc-------------CcccccceEEEEeccccccHHHHHHHHHhhccccccccc
Confidence            4666766553             2578899999999888 5999999999999999998764

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.14  E-value=3.6  Score=34.49  Aligned_cols=153  Identities=9%  Similarity=0.052  Sum_probs=95.9

Q ss_pred             eeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (403)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (403)
                      .+||+.+-.++.++++..+++. ...+|.||+-.+++..... +.++.+++..+.|++.=....      +...-.+ +.
T Consensus         3 ~ki~lAlD~~~~~~a~~l~~~~-~~~v~~iKig~~l~~~~G~-~~v~~l~~~~~~~i~~D~K~~------DIg~t~~-~~   73 (212)
T d1km4a_           3 NRLILAMDLMNRDDALRVTGEV-REYIDTVKIGYPLVLSEGM-DIIAEFRKRFGCRIIADFAVA------DIPETNE-KI   73 (212)
T ss_dssp             GGEEEEECCSSHHHHHHHHHHH-TTTCSEEEEEHHHHHHHCT-HHHHHHHHHHCCEEEEEEEEC------SCHHHHH-HH
T ss_pred             CCeEEEecCCCHHHHHHHHHHh-CCCCcEEEECHHHHHhcCH-HHHHHHHHhcccceehhhhhh------ccccHHH-Hh
Confidence            3489999999999999988875 6679999999998865332 467778776788877654432      2222122 34


Q ss_pred             HHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCH-----hHHHHHHHHHHHcCCCEEEEEeecC
Q 015614           91 LHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSE-----EDLGYLVSRMQATGADIIKLVFSVN  164 (403)
Q Consensus        91 l~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~-----~~l~~~~~~~~~~gadivKia~~~~  164 (403)
                      .+.+.++|++++-|=-....+-++... ..+..+.++++-.+..  .++.     ....+..+.....|.+  -+++...
T Consensus        74 ~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s--~~~~~~~~~~~~~~~~~~~~~~g~~--g~v~~~~  149 (212)
T d1km4a_          74 CRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMS--HPGAEMFIQGAADEIARMGVDLGVK--NYVGPST  149 (212)
T ss_dssp             HHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCS--SGGGGTTHHHHHHHHHHHHHHHTCC--EEECCTT
T ss_pred             HhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhc--chhhhhhhhhHHHHHHHHHHHhCCc--ccccccc
Confidence            566778899999998777666555544 2222344554422211  1211     2244444555566654  4567777


Q ss_pred             CHhHHHHHHHHh
Q 015614          165 DITEIARIFQLL  176 (403)
Q Consensus       165 ~~~D~~~ll~~~  176 (403)
                      ++++...+-+..
T Consensus       150 ~~~~i~~ir~~~  161 (212)
T d1km4a_         150 RPERLSRLREII  161 (212)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHhhhhhcc
Confidence            788776665543

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.99  E-value=0.28  Score=36.41  Aligned_cols=29  Identities=21%  Similarity=0.442  Sum_probs=26.0

Q ss_pred             eEEEEcchhHHHHHHHHHHHCCCeEEEEe
Q 015614          370 MFVLAGAGGAGRALAFGAKSRGARVVIFD  398 (403)
Q Consensus       370 ~~lilGaGGaarai~~al~~~g~~i~v~n  398 (403)
                      ++||+|+||---|++++|.+...+|+++.
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~~p   30 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHFYP   30 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEEec
Confidence            69999999999999999998777888874

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.78  E-value=1.2  Score=37.75  Aligned_cols=116  Identities=22%  Similarity=0.273  Sum_probs=68.5

Q ss_pred             EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEE---EeecCCCCCCCCCCHHHHHH
Q 015614           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLI---VYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~---T~R~~~eGG~~~~~~~~~~~   89 (403)
                      |...|+..+.++++.-++...+.|.+++|+.+.-   .+-.+.++.+++...--+++   |+.+          .    +
T Consensus        11 iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~---p~a~~~i~~l~~~~~~~~~vGaGTV~~----------~----~   73 (202)
T d1wa3a1          11 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFTV---PDADTVIKELSFLKEKGAIIGAGTVTS----------V----E   73 (202)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHTHHHHHTTCEEEEESCCS----------H----H
T ss_pred             EEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCC---ccHHHHHHHHHHhcCCCcEEEeccccc----------H----H
Confidence            3455889999999999999999999999998762   12134555554322112333   3332          2    2


Q ss_pred             HHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614           90 ALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (403)
Q Consensus        90 ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi  159 (403)
                      -++.+++.|++|+ +-=.+.++..+..   ++.+..+|-..-    ||  .|+    .++.++|+|++|+
T Consensus        74 ~~~~a~~aGa~fi-vsP~~~~~v~~~~---~~~~i~~iPGv~----Tp--sEi----~~A~~~G~~~lK~  129 (202)
T d1wa3a1          74 QCRKAVESGAEFI-VSPHLDEEISQFC---KEKGVFYMPGVM----TP--TEL----VKAMKLGHTILKL  129 (202)
T ss_dssp             HHHHHHHHTCSEE-ECSSCCHHHHHHH---HHHTCEEECEEC----SH--HHH----HHHHHTTCCEEEE
T ss_pred             HHHHHHhhcccEE-eCCCCcHHHHHHH---HhcCCceeCCcC----cH--HHH----HHHHHCCCCEEEe
Confidence            3567889999987 2222233333322   234555554432    44  233    3345789999996

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.61  E-value=0.29  Score=41.09  Aligned_cols=38  Identities=26%  Similarity=0.361  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.++++.|+|.|..|+.++.-+..+|++|+.++|..
T Consensus        40 ~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~   77 (184)
T d1ygya1          40 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV   77 (184)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             ccccceeeeeccccchhHHHHHHhhhccceEEeecCCC
Confidence            45678999999999999999999999999999998864

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=87.39  E-value=0.4  Score=40.49  Aligned_cols=38  Identities=26%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.|+++.|+|.|..|+.++.-|...|++|..+++..
T Consensus        43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   80 (191)
T d1gdha1          43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHR   80 (191)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ceecccceEEeecccchHHHHHHHHhhccccccccccc
Confidence            45678999999999999999999999999999888754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=87.24  E-value=0.15  Score=42.45  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=29.6

Q ss_pred             CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +|++++|.|+ ||.+.+++.-.+..|++|+.+.|+.+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~   65 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE   65 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHH
Confidence            5899999997 55899888888889998887777643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=86.89  E-value=0.13  Score=42.52  Aligned_cols=36  Identities=22%  Similarity=0.186  Sum_probs=29.3

Q ss_pred             CCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecCCC
Q 015614          367 AGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFG  402 (403)
Q Consensus       367 ~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~~~  402 (403)
                      +|++++|.|+|| .+.+++.-++..|++|+++.++.+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~   64 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ   64 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchH
Confidence            478999997655 898888888888999888877654

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=86.84  E-value=3.3  Score=36.36  Aligned_cols=129  Identities=16%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             CCCCeeEE--EecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc---------------------hHHHHHHhcC
Q 015614            7 TKNTTMIC--APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTKK   63 (403)
Q Consensus         7 ~~~~~~ic--v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---------------------~~l~~l~~~~   63 (403)
                      +++++.+.  ++.-.||.+...+.++...+.|+|+|||-+-+-.+.-+.                     +.++.+|+..
T Consensus        13 ~~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~   92 (261)
T d1rd5a_          13 AKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL   92 (261)
T ss_dssp             HTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC
T ss_pred             HcCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccc
Confidence            45555543  456778899988888888888999999998876654321                     3344455555


Q ss_pred             CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHH
Q 015614           64 PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLG  143 (403)
Q Consensus        64 ~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~  143 (403)
                      +.|+++-..-.          ..+...++.+.+.                        +-..+|+  .|   -| .||-.
T Consensus        93 ~~p~ilm~Y~n----------~~~~~~~~~~~~~------------------------GvdG~Ii--pD---lp-~eE~~  132 (261)
T d1rd5a_          93 SCPVVLLSYYK----------PIMFRSLAKMKEA------------------------GVHGLIV--PD---LP-YVAAH  132 (261)
T ss_dssp             SSCEEEECCSH----------HHHSCCTHHHHHT------------------------TCCEEEC--TT---CB-TTTHH
T ss_pred             cCceeeeeeec----------chhhHHHHHHHhc------------------------Cceeeee--cC---cc-HHHHH
Confidence            66766442210          0000011122222                        3334443  22   11 34666


Q ss_pred             HHHHHHHHcCCCEEEEEeecCCHhHHHHHHHH
Q 015614          144 YLVSRMQATGADIIKLVFSVNDITEIARIFQL  175 (403)
Q Consensus       144 ~~~~~~~~~gadivKia~~~~~~~D~~~ll~~  175 (403)
                      +..+.+.+.|-+.+.++....+.+...++.+.
T Consensus       133 ~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~  164 (261)
T d1rd5a_         133 SLWSEAKNNNLELVLLTTPAIPEDRMKEITKA  164 (261)
T ss_dssp             HHHHHHHHTTCEECEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHhccccceEEEeccCCchhHHHHHHhc
Confidence            77788888899999998777777777776665

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=86.51  E-value=0.42  Score=40.02  Aligned_cols=38  Identities=16%  Similarity=-0.013  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      ..+.++++.|+|.|..|++++-.|..+|++|..++|..
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             eeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            45789999999999999999999999999999998853

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.08  E-value=1.1  Score=37.08  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=31.5

Q ss_pred             CCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614          364 SPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (403)
Q Consensus       364 ~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR  399 (403)
                      .+++||+++|+|-+.. ||.++.-|.+.|+.|++++.
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~   61 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDV   61 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECS
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecc
Confidence            4789999999997765 99999999999998888865

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=0.29  Score=35.38  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=29.9

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      |++.|+|+|=-||-.+.+...+|+++.+++-+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            589999999999999999999999998887653

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.81  E-value=0.35  Score=40.23  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=31.3

Q ss_pred             CCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      +|.++||.| +||++.+++.-++.+|++|+.+.++.+|
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH
Confidence            478999999 5889999988888999988888887665

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.70  E-value=4.6  Score=35.08  Aligned_cols=125  Identities=11%  Similarity=0.017  Sum_probs=75.7

Q ss_pred             EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc---------------------hHHHHHHhcCCCcEEEEee
Q 015614           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTKKPLPVLIVYR   72 (403)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---------------------~~l~~l~~~~~~PiI~T~R   72 (403)
                      -++.-.|+.+..++.++. +..|||+||+-+-+-.+.-+.                     +.++.+|+..+.|+|+-..
T Consensus        10 y~taG~P~~~~s~~~l~~-l~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y   88 (248)
T d1geqa_          10 YLTAGDPDKQSTLNFLLA-LDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTY   88 (248)
T ss_dssp             EEETTSSCHHHHHHHHHH-HGGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEEC
T ss_pred             EEcCcCCCHHHHHHHHHH-HHcCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEec
Confidence            356778899988877765 467999999999877654321                     3445566666888765543


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHc
Q 015614           73 PKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQAT  152 (403)
Q Consensus        73 ~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~  152 (403)
                      -.      +.-.--.-++++.+.+.|++-+.+--                             -| .||..+..+.+++.
T Consensus        89 ~N------~i~~~G~~~f~~~~~~~Gv~GliipD-----------------------------LP-~eE~~~~~~~~~~~  132 (248)
T d1geqa_          89 YN------PIYRAGVRNFLAEAKASGVDGILVVD-----------------------------LP-VFHAKEFTEIAREE  132 (248)
T ss_dssp             HH------HHHHHCHHHHHHHHHHHTCCEEEETT-----------------------------CC-GGGHHHHHHHHHHH
T ss_pred             cc------cccccCHHHHhhhhcccCeeEEeccC-----------------------------Cc-HHHHHHHHhhcccc
Confidence            21      00001123566667777766554310                             11 24555566666677


Q ss_pred             CCCEEEEEeecCCHhHHHHHHHH
Q 015614          153 GADIIKLVFSVNDITEIARIFQL  175 (403)
Q Consensus       153 gadivKia~~~~~~~D~~~ll~~  175 (403)
                      |-+.+.++....+.+...++.+.
T Consensus       133 gl~~I~lvaPtt~~~ri~~i~~~  155 (248)
T d1geqa_         133 GIKTVFLAAPNTPDERLKVIDDM  155 (248)
T ss_dssp             TCEEEEEECTTCCHHHHHHHHHH
T ss_pred             CcceEEEecccchhHHHHHHHhc
Confidence            77788777766666555555544

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.28  E-value=0.22  Score=44.80  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=29.7

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHC--CCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~--g~~i~v~nR~~  401 (403)
                      .+.++|+|+|.++.++++.|++.  |.+|+|+.+..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            45699999999999999999864  78999998864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.20  E-value=0.46  Score=36.27  Aligned_cols=34  Identities=18%  Similarity=0.036  Sum_probs=27.6

Q ss_pred             CCeEEEEcchhHHHHHHHHHHH---CCCeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKS---RGARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~---~g~~i~v~nR~~  401 (403)
                      .++++|+|+|-+|--.+..|.+   +|.+|+++.|..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            4799999999999888776554   477999998864

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.92  E-value=5.5  Score=34.89  Aligned_cols=126  Identities=17%  Similarity=0.174  Sum_probs=77.4

Q ss_pred             EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc---------------------hHHHHHHhcC-CCcEEEEe
Q 015614           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTKK-PLPVLIVY   71 (403)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---------------------~~l~~l~~~~-~~PiI~T~   71 (403)
                      .++.-.|+.+..++.++...+.|||+|||-+-+-.+.-+.                     +.++.+|+.. ..|+++-.
T Consensus        22 y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~  101 (267)
T d1qopa_          22 FVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLM  101 (267)
T ss_dssp             EEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEE
T ss_pred             EEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEe
Confidence            4577889999888888887789999999998877654221                     2344555553 78887664


Q ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHH
Q 015614           72 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQA  151 (403)
Q Consensus        72 R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~  151 (403)
                      ....-   +....   -++++.+.+.|++-+-|--                             -| .+|..+..+.+.+
T Consensus       102 Y~N~i---~~~G~---~~f~~~~~~~Gv~GliipD-----------------------------lP-~ee~~~~~~~~~~  145 (267)
T d1qopa_         102 YANLV---FNNGI---DAFYARCEQVGVDSVLVAD-----------------------------VP-VEESAPFRQAALR  145 (267)
T ss_dssp             CHHHH---HTTCH---HHHHHHHHHHTCCEEEETT-----------------------------CC-GGGCHHHHHHHHH
T ss_pred             eccch---hhcCc---hHHHHHHHhcCCCceeccc-----------------------------hh-hhhhHHHHHhhhc
Confidence            42100   11111   2455666677766544310                             11 2344455566677


Q ss_pred             cCCCEEEEEeecCCHhHHHHHHHH
Q 015614          152 TGADIIKLVFSVNDITEIARIFQL  175 (403)
Q Consensus       152 ~gadivKia~~~~~~~D~~~ll~~  175 (403)
                      .|.+.+.++....+.+-..++.+.
T Consensus       146 ~~l~~I~lvaPtt~~~Ri~~i~~~  169 (267)
T d1qopa_         146 HNIAPIFICPPNADDDLLRQVASY  169 (267)
T ss_dssp             TTCEEECEECTTCCHHHHHHHHHH
T ss_pred             cCceEEEEecccccHHHHHHHHhh
Confidence            777888777776666666655554

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.82  E-value=0.45  Score=37.57  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             CCeEEEEcchhHHHHHHHHHH----HCCCeEEEEecC
Q 015614          368 GRMFVLAGAGGAGRALAFGAK----SRGARVVIFDID  400 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~----~~g~~i~v~nR~  400 (403)
                      .++++|+|+|.+|--++.+|.    ++|.+|+++.+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccc
Confidence            478999999999988888884    468899998875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=84.60  E-value=0.46  Score=37.13  Aligned_cols=36  Identities=11%  Similarity=0.092  Sum_probs=30.8

Q ss_pred             CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      +++|+++|+|.|-.|--.+..|.+..-+|+++-|..
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            579999999999999888888887766999998864

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.47  E-value=0.62  Score=37.21  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=30.3

Q ss_pred             CCCeEEEE--cchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          367 AGRMFVLA--GAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       367 ~~~~~lil--GaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++.++|+  |+|-.|-.++..|+++|++|+|+.|..
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            36778887  778889999999999999999999864

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=83.96  E-value=0.5  Score=38.86  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             CCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       367 ~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      ++.++||-| +||++.+++.-.+.+|++|+.+.|+.+|
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA   60 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence            456799999 5999999988778889988888887765

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.89  E-value=0.54  Score=36.73  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      .++||+++|+|.|.+|--.+..|.+..-+|+++.|..
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             hcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            3679999999999998888778888755999998753

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=83.79  E-value=2.4  Score=38.49  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=58.2

Q ss_pred             EecccCCHHHHHH----HHHHHHhcCCCEEEEEec--CC--------CCC-CC-------------chHHHHHHhcCCCc
Q 015614           15 APLMAQSVEQVLS----NMYQAKAEGADVVEIRLD--CI--------NNF-QP-------------GKDLEIILTKKPLP   66 (403)
Q Consensus        15 v~l~~~~~~e~~~----~~~~~~~~~~D~vElRlD--~l--------~~~-~~-------------~~~l~~l~~~~~~P   66 (403)
                      ..++..++++++.    -+..+.+.|.|.|||-.=  ||        .+. ++             .+.+..+|+..+.|
T Consensus       131 ~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~  210 (337)
T d1z41a1         131 VEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGP  210 (337)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhccc
Confidence            3455555555443    344557799999999762  22        111 11             14556677777889


Q ss_pred             EEEEeecC--CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015614           67 VLIVYRPK--WAGGLYEGDEHKRLEALHLAEDLGADYVDFELK  107 (403)
Q Consensus        67 iI~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~  107 (403)
                      +++.++..  .+||   .+.++..++.+.+.+.|++++++-..
T Consensus       211 ~~vr~~~~~~~~~g---~~~~~~~~~~~~l~~~g~d~~~~s~g  250 (337)
T d1z41a1         211 LFVRVSASDYTDKG---LDIADHIGFAKWMKEQGVDLIDCSSG  250 (337)
T ss_dssp             EEEEEECCCCSTTS---CCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ceEEecccccccCc---cchhhhHHHHHHHHHcCCcccccccc
Confidence            98766643  2233   35678888889999999999988644

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=83.59  E-value=7  Score=34.53  Aligned_cols=160  Identities=15%  Similarity=0.244  Sum_probs=95.1

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCCchHHHH-------HHhcCCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614           21 SVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEI-------ILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (403)
Q Consensus        21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~~-------l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (403)
                      +.+++++.++..+..|||.|.+=--.-.+    .+..+++.+       +++..  ++++++-|.            +-+
T Consensus        36 ~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~--~~~iSIDT~------------~~e  101 (282)
T d1ajza_          36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF--EVWISVDTS------------KPE  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC--CCEEEEECC------------CHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcc--cceEEEEec------------ChH
Confidence            55788888988899999999986544322    122334433       33333  445566653            346


Q ss_pred             HHHHHHHcCCcEE-EEeccccchHHHHHHhccCCCcEEEEeccCC-----CCCCC--------HhHHHHHHHHHHHcCCC
Q 015614           90 ALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLD-----CETPS--------EEDLGYLVSRMQATGAD  155 (403)
Q Consensus        90 ll~~~~~~g~~yv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f-----~~tp~--------~~~l~~~~~~~~~~gad  155 (403)
                      ..+.|++.|+++| ||.--..++.++ +..  +.+..+|+.|+.-     +..|.        .+.+.+.++.+.+.|.+
T Consensus       102 Va~~al~~Ga~iINDvsg~~~~~~~~-~va--~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~  178 (282)
T d1ajza_         102 VIRESAKVGAHIINDIRSLSEPGALE-AAA--ETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIA  178 (282)
T ss_dssp             HHHHHHHTTCCEECCTTTTCSTTHHH-HHH--HHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCceEEechhhcccchhHH-Hhh--ccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCc
Confidence            7889999999987 343222233443 332  2366788876531     11111        12356667778888854


Q ss_pred             EEEEEeec-----CCHhHHHHHHHHhccC---CCCEEEEEcCccchhhhhh
Q 015614          156 IIKLVFSV-----NDITEIARIFQLLSHC---QVPIIAYSVGERGLVSQLL  198 (403)
Q Consensus       156 ivKia~~~-----~~~~D~~~ll~~~~~~---~~p~i~~~MG~~G~~SRil  198 (403)
                      -=+|++=|     .+.++++.+++-+...   +.|+ .++......+..++
T Consensus       179 ~~~IilDPGiGFgK~~~~n~~ll~~l~~~~~~~~Pi-LvG~SRKsfi~~~~  228 (282)
T d1ajza_         179 KEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPL-LVGMSRKSMIGQLL  228 (282)
T ss_dssp             GGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB-EECCTTCHHHHHHH
T ss_pred             HhhEecCCCcCcCCChhhhHHHHhhcchhhccccce-EEeccHHHHHHHHh
Confidence            44666654     6899999998876544   6675 44554455444444

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=83.55  E-value=5  Score=35.30  Aligned_cols=127  Identities=17%  Similarity=0.100  Sum_probs=73.4

Q ss_pred             CCCeeE--EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHHhcCC
Q 015614            8 KNTTMI--CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTKKP   64 (403)
Q Consensus         8 ~~~~~i--cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~~~~~   64 (403)
                      ++++.+  -++.-.|+.+..+..++.. ..|||+|||-+-+-++.-+                     .+.++.+|+..+
T Consensus        13 ~~~~ali~yitaG~P~~~~~~~~l~~l-~~gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~   91 (271)
T d1ujpa_          13 EGRAALIPYLTAGFPSREGFLQAVEEV-LPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTE   91 (271)
T ss_dssp             TTBCEEEEEEETTSSCHHHHHHHHHHH-GGGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC
T ss_pred             cCCceEEEEEeCcCCCHHHHHHHHHHH-HcCCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccC
Confidence            355554  4566778888888777664 5699999999987665422                     134455666678


Q ss_pred             CcEEEEeecCCCCCCCCCCHHH--HHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHH
Q 015614           65 LPVLIVYRPKWAGGLYEGDEHK--RLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDL  142 (403)
Q Consensus        65 ~PiI~T~R~~~eGG~~~~~~~~--~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l  142 (403)
                      .|+|+-..-.       . -..  .-++++.+.+.|++-+.+--                             -| .+|-
T Consensus        92 ~pivlm~Y~N-------~-i~~~G~~~F~~~~~~aGvdGliipD-----------------------------LP-~ee~  133 (271)
T d1ujpa_          92 KPLFLMTYLN-------P-VLAWGPERFFGLFKQAGATGVILPD-----------------------------LP-PDED  133 (271)
T ss_dssp             SCEEEECCHH-------H-HHHHCHHHHHHHHHHHTCCEEECTT-----------------------------CC-GGGC
T ss_pred             CcEEEEeech-------h-hhhCCchhHhHHHhhcCceeEeccc-----------------------------hh-hhhH
Confidence            8877654321       0 011  13456666677766554310                             11 2334


Q ss_pred             HHHHHHHHHcCCCEEEEEeecCCHhHHHHHH
Q 015614          143 GYLVSRMQATGADIIKLVFSVNDITEIARIF  173 (403)
Q Consensus       143 ~~~~~~~~~~gadivKia~~~~~~~D~~~ll  173 (403)
                      .+..+.+.+.|-+.+.++....+.+-..++.
T Consensus       134 ~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~  164 (271)
T d1ujpa_         134 PGLVRLAQEIGLETVFLLAPTSTDARIATVV  164 (271)
T ss_dssp             HHHHHHHHHHTCEEECEECTTCCHHHHHHHH
T ss_pred             HHHHHHhhccccceeeccCCCcchHHHHHHH
Confidence            4455666677888888866655554444443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.24  E-value=0.22  Score=41.00  Aligned_cols=36  Identities=31%  Similarity=0.264  Sum_probs=29.1

Q ss_pred             CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (403)
Q Consensus       366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~  401 (403)
                      -+|+++||.|+ ||.+.+++.-++..|+++.++.++.
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~   60 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   60 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCCEEEEECCCCCcccccchhhccccccceeeeccc
Confidence            35789999995 9999999888888899777666654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=83.09  E-value=0.35  Score=40.22  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             CCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614          368 GRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFGT  403 (403)
Q Consensus       368 ~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~~k  403 (403)
                      +.++||.| +||++.+++.-++.+|++|+.+.|+.+|
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k   68 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH
Confidence            45788887 5999999998889999988888887654

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.05  E-value=2.9  Score=37.82  Aligned_cols=93  Identities=18%  Similarity=0.162  Sum_probs=57.8

Q ss_pred             ecccCCHHHHHHH----HHHHHhcCCCEEEEEecC--C--------CCC-CC-------------chHHHHHHhcCCCcE
Q 015614           16 PLMAQSVEQVLSN----MYQAKAEGADVVEIRLDC--I--------NNF-QP-------------GKDLEIILTKKPLPV   67 (403)
Q Consensus        16 ~l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~--l--------~~~-~~-------------~~~l~~l~~~~~~Pi   67 (403)
                      .++..++++++.+    ++.+.+.|.|.|||-.-.  |        .+. ++             .+.+..+|+...-++
T Consensus       130 ~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~  209 (330)
T d1ps9a1         130 ELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDF  209 (330)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCc
Confidence            4555555554333    445577999999998763  1        111 11             145566776666666


Q ss_pred             EEEeecCCCCC-CCCCCHHHHHHHHHHHHHcCCcEEEEeccc
Q 015614           68 LIVYRPKWAGG-LYEGDEHKRLEALHLAEDLGADYVDFELKV  108 (403)
Q Consensus        68 I~T~R~~~eGG-~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~  108 (403)
                      ++.+|-..+-. .-..+.++..++.+.+.+.|++++++-...
T Consensus       210 ~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~  251 (330)
T d1ps9a1         210 IIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGW  251 (330)
T ss_dssp             EEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECB
T ss_pred             eeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhccccc
Confidence            67777442211 112356788888898889999999986544

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.66  E-value=0.65  Score=35.46  Aligned_cols=34  Identities=15%  Similarity=-0.017  Sum_probs=28.2

Q ss_pred             CCeEEEEcchhHHHHHHHHHHHCC---CeEEEEecCC
Q 015614          368 GRMFVLAGAGGAGRALAFGAKSRG---ARVVIFDIDF  401 (403)
Q Consensus       368 ~~~~lilGaGGaarai~~al~~~g---~~i~v~nR~~  401 (403)
                      .++++|+|+|.+|--.++.|..+|   .+|+++.|..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            479999999999999888887765   3799998753

>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein Lmo2234
species: Listeria monocytogenes [TaxId: 1639]

Probab=82.14  E-value=13  Score=31.32  Aligned_cols=84  Identities=21%  Similarity=0.326  Sum_probs=46.8

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCCchHHHHHHhcCCCcEE-EEeecCCCCCCCCCCH----HHHHH
Q 015614           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEIILTKKPLPVL-IVYRPKWAGGLYEGDE----HKRLE   89 (403)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~~~~~~l~~l~~~~~~PiI-~T~R~~~eGG~~~~~~----~~~~~   89 (403)
                      .-+++|.++   .+.+.|.|.|||+.+.+.+    ....+.++.+.+...+++. ++.-...  ..-+...    +.-.+
T Consensus        14 ~~~lee~l~---~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~--~~~~~~~~~~~~~~~~   88 (275)
T d2g0wa1          14 EVSFPKRVK---VAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQW--GTAEDRTAEQQKKEQT   88 (275)
T ss_dssp             TSCHHHHHH---HHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEECBCCC--SSTTTCCHHHHHHHHH
T ss_pred             CCCHHHHHH---HHHHhCCCEEEEccccccccccCcCCHHHHHHHHHHcCCceEEEeecccc--CCCchhHHHHHHHHHH
Confidence            345677665   4456799999999865432    1223466677777888764 3332111  1111111    22334


Q ss_pred             HHHHHHHcCCcEEEEecc
Q 015614           90 ALHLAEDLGADYVDFELK  107 (403)
Q Consensus        90 ll~~~~~~g~~yvDiEl~  107 (403)
                      .++.|..+|+.+|-+...
T Consensus        89 ~i~~A~~lG~~~v~~~~~  106 (275)
T d2g0wa1          89 TFHMARLFGVKHINCGLL  106 (275)
T ss_dssp             HHHHHHHHTCCEEEECCC
T ss_pred             HHHHHHHhCCceEecCCC
Confidence            566666778887766543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.89  E-value=0.69  Score=34.43  Aligned_cols=34  Identities=26%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             CCCeEEEEcchhHHHHH-HHHHHHCCCeEEEEecC
Q 015614          367 AGRMFVLAGAGGAGRAL-AFGAKSRGARVVIFDID  400 (403)
Q Consensus       367 ~~~~~lilGaGGaarai-~~al~~~g~~i~v~nR~  400 (403)
                      +.+++.++|-||++.+. |..|.+.|++|+-.++.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46899999999999666 77789999999988875

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.34  E-value=1.7  Score=38.92  Aligned_cols=57  Identities=19%  Similarity=0.250  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEE
Q 015614          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  396 (403)
Q Consensus       339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v  396 (403)
                      +.|+..+++..+...+..... --...+++++++|=|-|-+|+.++..|.++|++|.-
T Consensus         8 G~GV~~~~~~~l~~~~~~~~~-gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~   64 (293)
T d1hwxa1           8 GRGVFHGIENFIENASYMSIL-GMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVA   64 (293)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHH-TCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHhcccchhc-cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            567888887765421100000 001357899999999999999999999999997543

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.97  E-value=6.9  Score=34.55  Aligned_cols=86  Identities=20%  Similarity=0.287  Sum_probs=57.3

Q ss_pred             CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----------CC---chHHHHHHhcCCCcEEEEeecCC
Q 015614           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----------QP---GKDLEIILTKKPLPVLIVYRPKW   75 (403)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-----------~~---~~~l~~l~~~~~~PiI~T~R~~~   75 (403)
                      .+.+.....+.+.++....++.+...|||++|+-+-+-...           ++   .+.++.+++.++.|+++-++...
T Consensus       103 ~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~~~  182 (312)
T d1gtea2         103 NIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNV  182 (312)
T ss_dssp             SEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCS
T ss_pred             cccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccCCceeecccccc
Confidence            34555566778888877777777778999999988765421           11   12334556667999998887431


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614           76 AGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (403)
Q Consensus        76 eGG~~~~~~~~~~~ll~~~~~~g~~yvDi  104 (403)
                             +  ...++.+.+.+.|++.|.+
T Consensus       183 -------~--~~~~i~~~~~~~g~~gi~~  202 (312)
T d1gtea2         183 -------T--DIVSIARAAKEGGADGVTA  202 (312)
T ss_dssp             -------S--CHHHHHHHHHHHTCSEEEE
T ss_pred             -------h--hHHHHHHHHHHhcccceEE
Confidence                   1  1235666777888888764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=80.29  E-value=0.8  Score=39.73  Aligned_cols=32  Identities=28%  Similarity=0.287  Sum_probs=28.8

Q ss_pred             CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (403)
Q Consensus       369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~  400 (403)
                      ..++|||+|.++..++..++++|.+++++.+.
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~   74 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRW   74 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            35999999999999999999999998888764