Citrus Sinensis ID: 015646

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFLSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVLPH
ccccccEEEEccccEEEEcccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHccccccEEEEEEEEEEcccEEEccccccccEEEEEccccccEEEEEEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccEEEEEEEEEEcccHHHHHHHHHHccccccccccccEEccHHHHHHHHcccccccHHHHcccccccccccEEEccccccccccHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccc
cccccEEEEEccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHccHHccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccccccHEHHHHHHEHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccc
mfnlhsvdvdieteTAWVQTGATLGEVYYRISekskthgfpagvcptvgvgghiggggygnMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVvngtksgtKTVRASFLSLFLGDSNRLLSIMNesfpelglaqsdcietswIRSVLFWtnfqiddplnillnrtpptltflkrksdyvkqpipkngLEFIWKRMIEletpqmifnpyggkmaeipstatpfphragnlWKIQYVtnwnepgtDAANRYLNLTRKLygymtpfvsknprqaffnyrdidlginhngkaSFEEAKAYGIKYFLGNFNRLVKIKtkvdpgnffrneqsipvlph
mfnlhsvdvdietetawvqtgATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVngtksgtktvRASFLSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTflkrksdyvkqpipkNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKvdpgnffrneqsipvlph
MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVgvgghiggggygNMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFLSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVLPH
*****SVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFLSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFF***********
**NLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFLSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVL**
MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFLSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVLPH
*FNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFLSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVLPH
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MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFLSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVLPH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
Q9SVG4570 Reticuline oxidase-like p no no 0.980 0.692 0.562 1e-117
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.987 0.730 0.475 1e-100
A6P6W1545 Cannabidiolic acid syntha N/A no 0.972 0.719 0.475 1e-100
A6P6W0545 Cannabidiolic acid syntha N/A no 0.982 0.726 0.475 1e-99
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.985 0.728 0.481 5e-98
A6P6V9544 Cannabidiolic acid syntha N/A no 0.985 0.729 0.463 5e-97
P30986538 Reticuline oxidase OS=Esc N/A no 0.957 0.717 0.425 1e-75
P93479535 Reticuline oxidase OS=Pap N/A no 0.947 0.714 0.423 8e-74
O06997447 Uncharacterized FAD-linke yes no 0.870 0.785 0.278 5e-17
Q796Y5451 Uncharacterized FAD-linke no no 0.863 0.771 0.270 3e-12
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function desciption
 Score =  422 bits (1086), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/405 (56%), Positives = 300/405 (74%), Gaps = 10/405 (2%)

Query: 1   MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYG 60
           M N+  V VDI + +AW+  GATLGEVYYRI EKS+ HGFPAGVCPTVGVGGH+ GGGYG
Sbjct: 138 MSNIRDVSVDIASNSAWISAGATLGEVYYRIWEKSRVHGFPAGVCPTVGVGGHLSGGGYG 197

Query: 61  NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
           NM+RK+GL+VD + DAK+VDV+GR+LDRK+MGEDLFWAI GGGG S+GVVL Y++KLV V
Sbjct: 198 NMVRKFGLSVDYVEDAKIVDVNGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLVPV 257

Query: 121 PETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFL 180
           P  VTVF+V + ++  A ++V++WQ V  K  P +LF+R+++  V  T+   KTVRAS +
Sbjct: 258 PSVVTVFRVEQYMDSGAVDMVHKWQSVGPKTDP-NLFMRMLIQPV--TRKKVKTVRASVV 314

Query: 181 SLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTN----FQIDDPLNILLNRT 236
           +LFLG ++ +++++++ FPELGL + +C E +W +S L+W N     Q+D    + L+R 
Sbjct: 315 ALFLGRADEVVALLSKEFPELGLKKENCSEMTWFQSALWWDNRLNATQVDP--KVFLDRN 372

Query: 237 PPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHR 296
             T +F KRKSDYV   IPK G+E ++K+MIEL    ++FNPYGGKMAE+   A PFPHR
Sbjct: 373 LDTSSFGKRKSDYVATAIPKKGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHR 432

Query: 297 AGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHN 356
              L+KIQY  NW E   +    YLN  + LY +MT FVSKNPR ++FNYRD+D+G+N +
Sbjct: 433 -NKLFKIQYSVNWKENSAEIEKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDH 491

Query: 357 GKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVL 401
           G  S++E + YG KYF  NF+RLVKIKT VDPGNFFRNEQSIP L
Sbjct: 492 GANSYKEGEVYGRKYFGENFDRLVKIKTAVDPGNFFRNEQSIPTL 536

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: 1EC: .EC: -EC: .EC: -
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
147845848 531 hypothetical protein VITISV_015121 [Viti 0.997 0.757 0.759 1e-178
225444147 531 PREDICTED: reticuline oxidase-like prote 0.997 0.757 0.756 1e-177
147838818 531 hypothetical protein VITISV_000229 [Viti 0.997 0.757 0.746 1e-175
225444157 531 PREDICTED: reticuline oxidase-like prote 0.997 0.757 0.744 1e-174
359483738 552 PREDICTED: reticuline oxidase-like prote 0.997 0.728 0.739 1e-173
356555938 535 PREDICTED: reticuline oxidase-like prote 0.997 0.751 0.736 1e-171
255564309 540 Reticuline oxidase precursor, putative [ 0.997 0.744 0.716 1e-171
356532465 536 PREDICTED: reticuline oxidase-like prote 0.992 0.746 0.727 1e-171
255564311 511 Reticuline oxidase precursor, putative [ 0.992 0.782 0.694 1e-170
359483736 537 PREDICTED: reticuline oxidase-like prote 0.997 0.748 0.729 1e-168
>gi|147845848|emb|CAN80091.1| hypothetical protein VITISV_015121 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 306/403 (75%), Positives = 349/403 (86%), Gaps = 1/403 (0%)

Query: 1   MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYG 60
           MFNL S+ VDIE E+AWVQ GATLGE+YYRI+EKSKTHGFPAGVCPTVG GGH  GGGYG
Sbjct: 130 MFNLRSISVDIEDESAWVQAGATLGEIYYRIAEKSKTHGFPAGVCPTVGAGGHFSGGGYG 189

Query: 61  NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
           NMMRKYGL+VDNIVDA+LVDV+GRLL+RKSMGEDLFWAIRGGGGAS+GV+++Y+IKLV+V
Sbjct: 190 NMMRKYGLSVDNIVDAELVDVNGRLLNRKSMGEDLFWAIRGGGGASYGVIVSYKIKLVQV 249

Query: 121 PETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFL 180
           P TVTVF+V +TLEQNAT IVY+WQQVA K + DDLF+RL +DVVN ++SG KTVRA+FL
Sbjct: 250 PATVTVFRVARTLEQNATNIVYQWQQVADK-VDDDLFIRLTMDVVNSSRSGEKTVRATFL 308

Query: 181 SLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTL 240
           SLFLG S RLLSIMN S PELGL  SDC E SW+ SVLFWTNF I  P+  LL+R P  L
Sbjct: 309 SLFLGSSERLLSIMNTSLPELGLQSSDCTEMSWVESVLFWTNFAIGTPVEALLDRNPQVL 368

Query: 241 TFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNL 300
           T LKRKSDY+K+PIPK GLE IWK+MIEL+TP + FNPYGGKMAEI  +ATPFPHRAGNL
Sbjct: 369 THLKRKSDYLKEPIPKAGLEGIWKKMIELQTPALTFNPYGGKMAEISPSATPFPHRAGNL 428

Query: 301 WKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNGKAS 360
            KIQY TNW+E G++AA RY+NLTR+LY YMTPFVSK PR+AF NYRD+DLGINHNGK S
Sbjct: 429 CKIQYATNWDEEGSEAAERYINLTRQLYSYMTPFVSKFPREAFLNYRDLDLGINHNGKNS 488

Query: 361 FEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVLPH 403
           + E + YGIKYF  NFNRLV+IKTKVDPGNFFRNEQSIP LP+
Sbjct: 489 YLEGRVYGIKYFKKNFNRLVRIKTKVDPGNFFRNEQSIPTLPY 531

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444147|ref|XP_002269462.1| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147838818|emb|CAN60572.1| hypothetical protein VITISV_000229 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444157|ref|XP_002270585.1| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483738|ref|XP_002270181.2| PREDICTED: reticuline oxidase-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555938|ref|XP_003546286.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|255564309|ref|XP_002523151.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537558|gb|EEF39182.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356532465|ref|XP_003534793.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|255564311|ref|XP_002523152.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537559|gb|EEF39183.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359483736|ref|XP_002267904.2| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.985 0.753 0.679 1e-148
TAIR|locus:2025452541 AT1G01980 [Arabidopsis thalian 0.985 0.733 0.556 2.3e-119
TAIR|locus:2027362536 AT1G11770 [Arabidopsis thalian 0.987 0.742 0.554 3.7e-119
TAIR|locus:2197950535 AT1G26380 [Arabidopsis thalian 0.985 0.742 0.549 3.7e-119
TAIR|locus:2197935530 AT1G26390 [Arabidopsis thalian 0.982 0.747 0.538 1.8e-117
TAIR|locus:2198000529 AT1G26420 [Arabidopsis thalian 0.980 0.746 0.537 1.8e-117
TAIR|locus:2204614531 AT1G30710 [Arabidopsis thalian 0.972 0.738 0.559 1.8e-117
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.970 0.741 0.547 6.2e-117
TAIR|locus:2121539570 AT4G20830 [Arabidopsis thalian 0.980 0.692 0.540 5.6e-116
TAIR|locus:2197900552 AT1G26410 [Arabidopsis thalian 0.980 0.715 0.532 9.1e-116
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
 Identities = 275/405 (67%), Positives = 325/405 (80%)

Query:     1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXX 60
             MFNL SVDVD+ ++TAWVQTGA LGEVYY I EKSKT  +PAG+CPTV            
Sbjct:   128 MFNLRSVDVDVASKTAWVQTGAILGEVYYYIWEKSKTLAYPAGICPTVGVGGHISGGGYG 187

Query:    61 NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
             NMMRKYGLTVDN +DA++VDV+G++LDRK MGEDL+WAI GGGG S+GVVLAY+I LV V
Sbjct:   188 NMMRKYGLTVDNTIDARMVDVNGKILDRKLMGEDLYWAINGGGGGSYGVVLAYKINLVEV 247

Query:   121 PETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFL 180
             PE VTVF++ +TLEQNAT+I++RWQQVA K LPD+LF+R ++DVVNGT S  KTVR +F+
Sbjct:   248 PENVTVFRISRTLEQNATDIIHRWQQVAPK-LPDELFIRTVIDVVNGTVSSQKTVRTTFI 306

Query:   181 SLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTL 240
             ++FLGD+  LLSI+N  FPELGL +SDC ETSWI+SVLFWTN Q+     +LL R  P +
Sbjct:   307 AMFLGDTTTLLSILNRRFPELGLVRSDCTETSWIQSVLFWTNIQVGSSETLLLQRNQP-V 365

Query:   241 TFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNL 300
              +LKRKSDYV++PI + GLE IWK+MIELE P M FNPYGG+M  I ST TPFP+RAGNL
Sbjct:   366 NYLKRKSDYVREPISRTGLESIWKKMIELEIPTMAFNPYGGEMGRISSTVTPFPYRAGNL 425

Query:   301 WKIQYVTNW-NEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGIN-HNGK 358
             WKIQY  NW +E  TD   RY+ LTRKLY +MTPFVSKNPRQ+FFNYRD+DLGIN HNGK
Sbjct:   426 WKIQYGANWRDETLTD---RYMELTRKLYQFMTPFVSKNPRQSFFNYRDVDLGINSHNGK 482

Query:   359 -ASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVLP 402
              +S+ E K YG KYF GNF RLVKIKT+VD GNFFRNEQSIPVLP
Sbjct:   483 ISSYVEGKRYGKKYFAGNFERLVKIKTRVDSGNFFRNEQSIPVLP 527
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
TAIR|locus:2025452 AT1G01980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027362 AT1G11770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197950 AT1G26380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198000 AT1G26420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204614 AT1G30710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121539 AT4G20830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197900 AT1G26410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029842001
SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (531 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 6e-17
pfam0803145 pfam08031, BBE, Berberine and berberine like 1e-16
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 4e-16
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.002
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 0.002
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information 
 Score = 81.9 bits (202), Expect = 6e-17
 Identities = 65/411 (15%), Positives = 115/411 (27%), Gaps = 55/411 (13%)

Query: 7   VDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKY 66
           +++D E  TA VQ G TL ++   ++              T  +GG+I     G    +Y
Sbjct: 88  LEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRY 147

Query: 67  GLTVDNIVDAKLVDVSGRLLD------RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
           GLT DN++  ++V   G +L       + + G DL     G  G   G++    +KL+ +
Sbjct: 148 GLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGT-LGIITEATLKLLPL 206

Query: 121 PET-VTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASF 179
           PET  T      ++E  A   V              +    +  +    K+    +    
Sbjct: 207 PETKATAVAGFPSIEAAARLAVAAIAL----LEALGVIPAALEFMDRPIKAAEAYLGGGA 262

Query: 180 LSLFL---------GDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLN 230
           L L           G     +    E+  EL L      +    + +       +     
Sbjct: 263 LPLEAPARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARLWLARKGA 322

Query: 231 ILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTA 290
           +              + D V   +P   L    + ++ L     +              A
Sbjct: 323 LAAAGALGPGVI---QEDVV---VPLEALPEFLREILALLDKAGLALRV----------A 366

Query: 291 TPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDID 350
                  GNL     +        +   R       L   +     +             
Sbjct: 367 LFGHAGDGNLHL--NILYDVGDEAEELARA----EALNEAIEALAVELG----------- 409

Query: 351 LGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVL 401
            G              +        +  L  IK   DP   F   +   +L
Sbjct: 410 -GSISGEHGIGRTKAEFLELEPGEAWALLRAIKRAFDPNGIFNPGKLFRLL 459

Length = 459
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
PLN02441525 cytokinin dehydrogenase 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 99.96
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.95
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.94
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.94
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.93
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.93
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.92
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 99.9
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.88
KOG1231505 consensus Proteins containing the FAD binding doma 99.87
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.8
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.68
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.63
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.59
KOG1232511 consensus Proteins containing the FAD binding doma 99.5
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.49
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.46
PRK11183564 D-lactate dehydrogenase; Provisional 99.42
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.34
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.02
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.01
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.92
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.92
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.89
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.6
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 98.09
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 97.33
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 97.27
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 97.18
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 96.65
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 96.35
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 96.33
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 96.01
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 95.81
PLN00107257 FAD-dependent oxidoreductase; Provisional 91.14
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 87.82
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 83.96
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=8.2e-31  Score=264.42  Aligned_cols=134  Identities=21%  Similarity=0.264  Sum_probs=118.0

Q ss_pred             CCCCCe-------eEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccE
Q 015646            1 MFNLHS-------VDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNI   73 (403)
Q Consensus         1 l~~m~~-------i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v   73 (403)
                      |++||+       +++|.+..+|+|++|++|.||++++.++|.. ....+.+..++|||.+.+||+|..+.+||+.+|||
T Consensus       116 ms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~V  194 (525)
T PLN02441        116 MRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNV  194 (525)
T ss_pred             CCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhE
Confidence            688998       3789999999999999999999999998742 22456777889999999999999999999999999


Q ss_pred             eEEEEEecCccEEe-cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecchhh
Q 015646           74 VDAKLVDVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQN  136 (403)
Q Consensus        74 ~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~  136 (403)
                      +++||||+||++++ ++++|+|||||++||+ |+|||||++|+|++|+|+.+.++.+.+....+
T Consensus       195 l~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~  257 (525)
T PLN02441        195 LELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSDFST  257 (525)
T ss_pred             EEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCCHHH
Confidence            99999999999997 8888999999999998 79999999999999999977666666654333

>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-102
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 2e-99
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 3e-99
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 3e-77
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-77
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-77
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 4e-77
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-77
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 7e-76
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 7e-76
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 2e-13
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 5e-13
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 8e-12
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 3e-10
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 5e-10
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 3e-08
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 4e-06
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 1e-04
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/410 (45%), Positives = 264/410 (64%), Gaps = 12/410 (2%)
Query: 3   NLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXXNM 62
           N+HS+ +D+ ++TAWV+ GATLGEVYY I+EK++   FP G CPTV             +
Sbjct: 107 NMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGAL 166
Query: 63  MRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPE 122
           MR YGL  DNI+DA LV+V G++LDRKSMGEDLFWAIRGGGG +FG++ A++IKLV VP 
Sbjct: 167 MRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPS 226
Query: 123 TVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVRLIL--DVVNGTKSGTKTVRASF 179
             T+F V+K +E     ++  +WQ +A K   D + +   +  ++ +       TV   F
Sbjct: 227 KSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYF 286
Query: 180 LSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWT---NFQIDD-PLNILLNR 235
            S+F G  + L+ +MN+SFPELG+ ++DC E SWI + +F++   NF   +    ILL+R
Sbjct: 287 SSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDR 346
Query: 236 TPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELE--TPQMIFNPYGGKMAEIPSTATPF 293
           +    T    K DYVK+PIP+  +  I +++ E +      +  PYGG M EI  +A PF
Sbjct: 347 SAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPF 406
Query: 294 PHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLG- 352
           PHRAG ++++ Y  +W +   +   +++N  R +Y + TP+VS+NPR A+ NYRD+DLG 
Sbjct: 407 PHRAGIMYELWYTASWEK--QEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGK 464
Query: 353 INHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVLP 402
            NH    ++ +A+ +G KYF  NFNRLVK+KTKVDP NFFRNEQSIP LP
Sbjct: 465 TNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 1e-168
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-167
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-147
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-147
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-147
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-144
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-141
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-139
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 4e-90
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 2e-36
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 7e-29
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 3e-12
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 1e-04
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 2e-04
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 5e-04
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 8e-04
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
 Score =  478 bits (1231), Expect = e-168
 Identities = 166/405 (40%), Positives = 241/405 (59%), Gaps = 15/405 (3%)

Query: 1   MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYG 60
           + NL+ V +D+E+ETAWV++G+TLGE+YY I+E S   GF AG CPTVG GGHI GGG+G
Sbjct: 97  LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFG 156

Query: 61  NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
            M RKYGL  DN+VDA L+D +G +LDR++MGED+FWAIRGGGG  +G + A++IKL+ V
Sbjct: 157 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 216

Query: 121 PETVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASF 179
           PE VTVF+V K +    AT ++++WQ VA + L +D  + ++        +  K V  + 
Sbjct: 217 PEKVTVFRVTKNVAIDEATSLLHKWQFVAEE-LEEDFTLSVLGG------ADEKQVWLTM 269

Query: 180 LSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPT 239
           L    G      S  +  FPELGL + D +E SW  S  +    +    LN    +    
Sbjct: 270 LGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDE- 328

Query: 240 LTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGN 299
               K K D  K+P+P      + +R+ +     +  N +GG+M++I S  TPFPHR+G 
Sbjct: 329 -RAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGT 387

Query: 300 LWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNG-- 357
              ++Y+  WN+        +L+   K+Y +M PFVSKNPR  + N+ D+DLG    G  
Sbjct: 388 RLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNK 447

Query: 358 ---KASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIP 399
                + E ++++G  YFL N+ RL++ KT +DP N F + QSIP
Sbjct: 448 TVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.95
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.95
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.95
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.93
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.93
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.93
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.92
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.89
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.87
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.79
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.77
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.77
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.54
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.51
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.46
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.41
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.37
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 90.05
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=1.6e-74  Score=587.22  Aligned_cols=399  Identities=49%  Similarity=0.916  Sum_probs=338.0

Q ss_pred             CCCCCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEEe
Q 015646            1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVD   80 (403)
Q Consensus         1 l~~m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV~   80 (403)
                      |++||+|++|+++++|+||||+++++|+++|.++++++.+++|.|++|||||+++|||+|+++++||+++|+|+++|||+
T Consensus       105 l~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G~~s~~~G~~~D~V~~~evV~  184 (518)
T 3vte_A          105 LRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN  184 (518)
T ss_dssp             CTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEEC
T ss_pred             CCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCccccCCCCchhheEEEEEEEc
Confidence            68999999999999999999999999999999987778889999999999999999999999999999999999999999


Q ss_pred             cCccEEecCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecch-hhHHHHHHHHHHHHhcCCCCCceEE
Q 015646           81 VSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVR  159 (403)
Q Consensus        81 a~G~~~~~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~  159 (403)
                      +||++++.+.+|+|||||+||||+|+|||||+++||++|.|+.+..|.+.+.+. +++.+++.+|+++.+. +|+++++.
T Consensus       185 adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~p~~l~~~  263 (518)
T 3vte_A          185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYK-YDKDLVLM  263 (518)
T ss_dssp             TTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHHHGGG-SCTTEEEE
T ss_pred             cCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHc-CCHhHeEE
Confidence            999999744468999999999855899999999999999999887888877654 6678899999999988 99999999


Q ss_pred             EEEeeecCC---CCCCceEEEEEEEEEecChhhHHhhhhccCCcCCCCcCcceeecHHHHHHhhhccCCC-Cc---cccc
Q 015646          160 LILDVVNGT---KSGTKTVRASFLSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQID-DP---LNIL  232 (403)
Q Consensus       160 ~~~~~~~~~---~~g~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~  232 (403)
                      +.+...++.   ..+...+.+.+.++|.|+.+++.+.|.+.+++++....++.+++|.+.+.++..++.+ .+   .+.+
T Consensus       264 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l  343 (518)
T 3vte_A          264 THFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEIL  343 (518)
T ss_dssp             EEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHHHHHHTSSSCCC-----CGGGG
T ss_pred             EEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhhhhhhhhcCCccCCccchhhhh
Confidence            888753210   1111235678899999999999988887777777666778899999988887655443 33   4556


Q ss_pred             cCCCCCCCccceeccccccCCCCHhHHHHHHHHHHhC--CCcEEEEEeCCCccCCCCCCCCCcccccCceEEEEEEeEeC
Q 015646          233 LNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIEL--ETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWN  310 (403)
Q Consensus       233 ~~r~~~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~Gg~~~~~~~~~tafp~R~~~~~~~~~~~~W~  310 (403)
                      ++|....+.+||.||.|+.+++++++|+.+++.+.+.  +.+.+.|.++||+++++++++||||||+++.|.+++.+.|.
T Consensus       344 ~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~~~~TAf~hR~~~~~~~~~~~~w~  423 (518)
T 3vte_A          344 LDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWE  423 (518)
T ss_dssp             GCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSCTTSSSCCCCTTCCEEEEEEEEEC
T ss_pred             ccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCCCCCCcccccCcceEEEEEEEecC
Confidence            6664444567889999998889999999999988763  35788999999999999999999999984489999999997


Q ss_pred             CCCchhhHHHHHHHHHHHhcccccccCCCCcccccccCCccC-CCCCCCchhHHHhhhhhhccccchHHHHHhhhhcCCC
Q 015646          311 EPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLG-INHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPG  389 (403)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Y~Ny~d~~~~-~~~~~~~~~~~~~~~~~~y~G~n~~rL~~iK~kyDP~  389 (403)
                      ++  +.++++.+|++++++.|.|+.+..+.|+|+||+|.+++ .+..+..+++.++.|++.|||+||+||++||+||||+
T Consensus       424 ~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~w~~~Yyg~N~~RL~~vK~~yDP~  501 (518)
T 3vte_A          424 KQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPN  501 (518)
T ss_dssp             CT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHHHHHHHSSTHHHHHHHHHHHHCTT
T ss_pred             Cc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhhHHHHHhHhHHHHHHHHHhhcCch
Confidence            65  45678899999999999999765567999999998876 3212233455667899999999999999999999999


Q ss_pred             CCccCCCCcCCCC
Q 015646          390 NFFRNEQSIPVLP  402 (403)
Q Consensus       390 n~F~~~~~I~p~~  402 (403)
                      |||+++|+|+|.+
T Consensus       502 n~F~~~QsI~p~~  514 (518)
T 3vte_A          502 NFFRNEQSIPPLP  514 (518)
T ss_dssp             CCSCCTTCCCCCC
T ss_pred             hcccCCCCCCCCC
Confidence            9999999999964
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 403
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-09
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 2e-07
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 55.3 bits (132), Expect = 2e-09
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 1   MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYG 60
                 ++V  +             +V      +             + VGG +   G  
Sbjct: 88  AAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGIS 146

Query: 61  NMMRKYGLTVDNIVDAKLVDVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLV 118
               ++G  + N+++  ++   G ++   K +  DLF A+ GG G  FGV+   RI + 
Sbjct: 147 GQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.93
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.87
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.79
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.79
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 98.98
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 98.89
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 98.85
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 95.87
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 95.27
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 95.03
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 92.44
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.93  E-value=6e-27  Score=209.41  Aligned_cols=117  Identities=20%  Similarity=0.266  Sum_probs=106.6

Q ss_pred             CCCCCee------EEeCCCCEEEEcCCCCHHHHHHHHHhcCCccee-cCCCCCccccccccccCccCccccccCcccccE
Q 015646            1 MFNLHSV------DVDIETETAWVQTGATLGEVYYRISEKSKTHGF-PAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNI   73 (403)
Q Consensus         1 l~~m~~i------~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~-~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v   73 (403)
                      |++||+|      ++|++..+++||||+++.||+++|.++|+  .+ ..+.+..+++||+++++|+|..+++||+.+|+|
T Consensus        82 l~~l~~i~~~~~~~id~~~~~v~v~aG~~~~~l~~~l~~~Gl--~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v  159 (206)
T d1w1oa2          82 MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGV--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNV  159 (206)
T ss_dssp             GGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTE--EESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSE
T ss_pred             ccccceeeeceeEEEecCCCEEEEEcceehhhhhhhhhcccc--ccccCCccCceEEeeeeccccceeccccccceeeee
Confidence            5678875      69999999999999999999999999874  33 356667789999999999999999999999999


Q ss_pred             eEEEEEecCccEEe-cCCCCcchhHHhhccCCCCeEEEEEEEEEEeec
Q 015646           74 VDAKLVDVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV  120 (403)
Q Consensus        74 ~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~  120 (403)
                      +++|||++||++++ ++.+|+|||||+||++ |+|||||+++||++|+
T Consensus       160 ~~~evV~~~G~~~~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         160 LEMDVITGHGEMVTCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEEEEEETTSCEEEEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             eEEEEEcCCCcEEEECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            99999999999997 7778999999999999 7999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure