Citrus Sinensis ID: 015660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEEEccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccc
Secondary Structure Prediction (SSPRO)
ccHHccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEccccccccccccEEcccccEEEEcccEEcccHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHc
Coil and Loop (DISEMBL)
maaengrvhpnclnasnpyheCGMACLEKIaqghghketpkkklgswsfgrknkasdsqpgtpltpravdkvavggqkangqharsenypkkkvesengksfsrpehfsreihpedhslnkekvrstqsvppsenikmndmsksppkesvtslpgaspskngkdnkvqapieihhstedggedipspadgsrnfsfsgidlasgdsddeeaqsvisdsvsvgkYHVRASISSILQSIISRYGDIaancnlesnsMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Flexible Loop (DISEMBL)
maaengrvhpnclnaSNPYHECGMACLEKIAQGHGHKETPKKKLGSWSFGRknkasdsqpgtpltpravDKVAVGGqkangqharsenypkkkvesengksfsrpehfsreihpedhslnkekvrstqsvppsenikmndmsksppKESVTSlpgaspskngkdnKVQAPIEIHHstedggedipspaDGSRNFSFSGIDLASGDSDDEEAQSVIsdsvsvgkyHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQatqskvtkfsqksladeil
Low Complexity Region (SEG)
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRAsissilqsiisRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL
Disordered region (IsUnstruct)
************LNASNPYHECGMACLEKIA*******************************************************************************************************************************************************************************************VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLL*********************************************************************
Disordered Region (DISOPRED)
***********CLNASNPYHECGMAC**************************************************************************************************************************************************************************************************VGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISE************************************************************************ATQSKVTKFSQKSLADEIL
Disordered Region (DISEMBL)
MAAENGRVHPNCLNASNPYHECGMACLEKIAQ************GSWSFG*************LTPRAVDKVAVGG*****************************EHFSREIHPEDHS*********************************************DNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLAS**********VISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK**************
Disordered Region (DISPRO)
********HPNCLNASNPYHECGMACLEKIAQG*************************************************************************************************************************************************************SRNFSFSGIDLASG*SDDEEAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLAD**L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLGSWSFGRKNKASDSQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVTKFSQKSLADEIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
255560551	400	conserved hypothetical protein [Ricinus	0.970	0.977	0.528	2e-91
449454227	402	PREDICTED: uncharacterized protein LOC10	0.937	0.940	0.455	4e-80
224105147	541	predicted protein [Populus trichocarpa]	0.960	0.715	0.480	3e-76
224078359	224	predicted protein [Populus trichocarpa]	0.538	0.968	0.600	8e-64
356536380	437	PREDICTED: uncharacterized protein LOC10	0.960	0.885	0.389	2e-61
356574151	411	PREDICTED: uncharacterized protein LOC10	0.950	0.931	0.390	4e-60
145334227	401	phospholipase-like (PEARLI 4) family pro	0.885	0.890	0.381	3e-59
15236270	386	phospholipase-like (PEARLI 4) family pro	0.885	0.924	0.381	3e-59
186516425	398	phospholipase-like (PEARLI 4) family pro	0.885	0.896	0.381	3e-59
297798414	386	hypothetical protein ARALYDRAFT_353319 [	0.928	0.968	0.384	6e-58

>gi|255560551|ref|XP_002521290.1| conserved hypothetical protein [Ricinus communis] gi|223539558|gb|EEF41146.1| conserved hypothetical protein [Ricinus communis]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 215/407 (52%), Positives = 268/407 (65%), Gaps = 16/407 (3%)

Query: 4   ENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLGSW------SFGRKNKASD 57
           +NGRVHP+C+NASNPYHECG+ACLEKIAQG G KE  KKK GS+      SFGRK K S+
Sbjct: 3   DNGRVHPDCVNASNPYHECGVACLEKIAQGQGWKE--KKKSGSFILDTSLSFGRKKKGSE 60

Query: 58  SQPGTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSREIHPEDH 117
           SQP +P     V   A     A+    RS    KKKVES+NG S S     S E + +DH
Sbjct: 61  SQPRSPKVANNVS-AAKAVYPADLSSPRSPFPTKKKVESDNGHSSSSSRQHSEESYSQDH 119

Query: 118 SLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHST 177
           S +K +V + + VP S N+K  D  K+    S T    A P++     K   P  I +  
Sbjct: 120 SFDKGQVLAPELVPVSGNLKP-DGPKNLSLGSFTCFAIAPPTEQDDKEKSPLPGAIKNVE 178

Query: 178 EDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQS 236
              G      +  S NF+FSGI  A+  SDDEE  SVISDS VSVGKYHVRA+ +SILQS
Sbjct: 179 ITNGR-----STESLNFTFSGISRATEGSDDEEILSVISDSCVSVGKYHVRANSASILQS 233

Query: 237 IISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESA 296
           II +YGDIAANC LES S+R YYLECLCSVVQELQSTSL Q+TK+KV+E++AVLKDVESA
Sbjct: 234 IIDKYGDIAANCRLESTSLRTYYLECLCSVVQELQSTSLNQLTKSKVRELLAVLKDVESA 293

Query: 297 QIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVA 356
           QIDV WLR+ILN ++EA+E + + Q  + AK NC +++EST+KELES + EL  KE+ VA
Sbjct: 294 QIDVSWLRSILNGLTEAVELNNKQQAAEEAKTNCDHVIESTRKELESMVEELGQKEQAVA 353

Query: 357 GLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403
             K  + +  A LS+LELES+ L   I + +SK+  F  K L D+IL
Sbjct: 354 NTKARIEEISAHLSELELESSELSDTILSLRSKIDNFHSKPLRDQIL 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454227|ref|XP_004144857.1| PREDICTED: uncharacterized protein LOC101210853 [Cucumis sativus] gi|449519968|ref|XP_004167006.1| PREDICTED: uncharacterized protein LOC101226690 [Cucumis sativus]

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 193/424 (45%), Positives = 266/424 (62%), Gaps = 46/424 (10%)

Query: 3   AENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLGSW------SFGRKNKAS 56
           AE  +V P+C+ ASNP+HEC   C++K A+    K+  KK  GS+      SFGRK K S
Sbjct: 2   AERRKVRPDCIYASNPFHECTDYCIKKTAESKAGKD--KKSKGSFRLDISKSFGRK-KGS 58

Query: 57  DSQPGTPLTPRAVDKVAVGGQKANGQHAR-----SENYPKKKVESENGKSFSRPEHF-SR 110
             +P     P+ VD    GG+ ++   +      S   PKKKVES NG   S  + F S 
Sbjct: 59  RPKP-----PKDVD----GGRYSSTVPSEPLSLNSRISPKKKVESINGGHISPAKRFYSE 109

Query: 111 EIHPEDHSLNKEKVRSTQSVPPSENIKMNDMS-KSPPKESVTSLPGASPSKNGKDNKVQA 169
           EIHPED SLN E+   T  +P  +++ M + S  SP K S+  L   S +KNG  N    
Sbjct: 110 EIHPEDPSLNVEQ-HDTPRIPSYDSLMMPEYSVDSPKKGSIRMLEQMSNNKNGGGN---- 164

Query: 170 PIEIHHSTEDGGEDIPSPADGSRNF---------SFSGIDLASGDSDDEEAQSVISDS-V 219
               H +  D     P+  +G   F         S SG +    DSD+EE +SV S+  V
Sbjct: 165 ----HETFFDNR--TPNGNNGKERFRKQSSESSFSLSGFEQTLVDSDEEEIESVNSEQCV 218

Query: 220 SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMT 279
            VGKYHV++S SSIL SI  +YGDIAA C LES SMR+YYLEC+C V+QELQST   Q+T
Sbjct: 219 PVGKYHVKSSFSSILTSIFEKYGDIAATCKLESVSMRSYYLECVCYVIQELQSTEFHQLT 278

Query: 280 KAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKK 339
           K+KV+E++A+ KDVES++I++ WL++ +NEI++A+E  +QH+ IDAAK +C   LES KK
Sbjct: 279 KSKVRELLAIFKDVESSEINITWLKSRINEIAQAVELRSQHRAIDAAKTDCEQNLESIKK 338

Query: 340 ELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLA 399
           EL+SQM +LALKEKE++  K  VA+T+ARLS+LEL+S++L+++I +  SKV  F  KS +
Sbjct: 339 ELDSQMADLALKEKELSDAKTKVAETEARLSELELKSSQLKEMISSIDSKVENFRCKSFS 398

Query: 400 DEIL 403
           D++L
Sbjct: 399 DDLL 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105147|ref|XP_002313701.1| predicted protein [Populus trichocarpa] gi|222850109|gb|EEE87656.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 201/418 (48%), Positives = 256/418 (61%), Gaps = 31/418 (7%)

Query: 7   RVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLGSW-----SFGRKNKASDSQPG 61
           R  P C  ASNP H+C   C  + ++ +   +  +K+ GS+     SFGRK K S+SQ  
Sbjct: 134 RAQP-CPRASNPSHKCDEFCSNRTSEAN--PQGVEKESGSFLDTALSFGRKKKESESQQN 190

Query: 62  TPLTPRAVD-----KVAVGGQKANGQHARSENYP-----KKKVESENGKSFSRPEHFSRE 111
           +P   RAV+     K AV    A     R+   P     KK  E EN +SFS  +  S E
Sbjct: 191 SP---RAVNNAPAVKGAVNNAPAVKAVRRAPPSPLILPTKKDEEPENSRSFSSSQPHSDE 247

Query: 112 IHPEDHSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTS--LPG-ASPSKNGK--DNK 166
            + EDH+L+K  V+S   +  S  I   D  KSP K S+    +P  A P +NGK   + 
Sbjct: 248 SYSEDHALDKVPVQSPGPMHVSGKI-TPDPPKSPSKISLACYKIPTPAEPQQNGKLHGSP 306

Query: 167 VQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDSVSV-GKYH 225
             AP   + S    G     P     NFSFSGI  AS  SD EE QSV+SDS    GKYH
Sbjct: 307 KAAP---YPSANHVGRVTNGPITEYLNFSFSGISRASEGSDGEEVQSVVSDSCVSVGKYH 363

Query: 226 VRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKE 285
           VRA+++SILQ I  +YGDIA    LES SMRAYYLECLC VVQELQ T   Q+TK+KV+E
Sbjct: 364 VRANVASILQLIFEKYGDIATGSRLESASMRAYYLECLCFVVQELQCTPFKQLTKSKVRE 423

Query: 286 MMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQM 345
           M+AVLKDVESAQIDV WLR+ILN+++E +E S QHQ  + +K+NC +L+ES KKELES M
Sbjct: 424 MLAVLKDVESAQIDVSWLRDILNDLAEGMELSNQHQAAEESKSNCDDLIESKKKELESMM 483

Query: 346 NELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403
            +LALKEK VA  K  + +T+  LS+LELES++L + I + QS+V KF +K LADEIL
Sbjct: 484 EDLALKEKAVADAKAQITETRTHLSNLELESSKLGETISSIQSRVEKFHEKPLADEIL 541

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078359|ref|XP_002305527.1| predicted protein [Populus trichocarpa] gi|222848491|gb|EEE86038.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (639), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 131/218 (60%), Positives = 164/218 (75%), Gaps = 1/218 (0%)

Query: 187 PADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIA 245
           P   +  + + GI  AS +SD+EE QSVISDS VSVGKYHVR +I+SILQ I+ +YGDIA
Sbjct: 7   PWTNACVWEYHGISRASEESDEEEVQSVISDSCVSVGKYHVRENIASILQLILDKYGDIA 66

Query: 246 ANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN 305
           A   LES SMRAYYLECLCSVV ELQ TS  Q+T +KV+EM+AVLKDVESAQIDV WLR+
Sbjct: 67  AGSRLESASMRAYYLECLCSVVHELQCTSFKQLTNSKVREMLAVLKDVESAQIDVSWLRD 126

Query: 306 ILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKT 365
           ILN+++E +E S+QHQ  + AK+ C + +ES KKELES M +LA KEK VA  K  +++T
Sbjct: 127 ILNDLAEGMELSSQHQAAEEAKSKCDHAIESIKKELESMMEDLAQKEKAVADAKAQISET 186

Query: 366 KARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403
           + RL+ LEL+S+RL + I +  S V KF  K LADEIL
Sbjct: 187 RDRLNKLELDSSRLSETISSIWSTVEKFHDKPLADEIL 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536380|ref|XP_003536716.1| PREDICTED: uncharacterized protein LOC100788258 [Glycine max]

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 166/426 (38%), Positives = 237/426 (55%), Gaps = 39/426 (9%)

Query: 3   AENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKLGSWSFGRKNKASDSQPGT 62
           AE G V P+C+ A NPYHEC  AC+ +I +    K +  KK  ++   R++  +D + G 
Sbjct: 26  AELGGVMPDCVYAPNPYHECTEACVHRIKEAKPGKPSKTKKGTAFKDYRRS-VTDGELGK 84

Query: 63  PLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSR----------------PE 106
             T +   +   G  KA+  +   + Y +K        +F R                P 
Sbjct: 85  --TMKEEKRRPSGCPKASNPYHVCDEYCQKADSGTMSLNFDRRKKVGSKPELPVLDSVPP 142

Query: 107 HFSREIHPEDHS--------LNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASP 158
                I+  D S          KE+ +S + +P S  I + D+   P    V +      
Sbjct: 143 SKIGAIYLSDASSPLSNYSEKTKEESKSNELIPVSGEIHVLDVM--PTNHKVQA------ 194

Query: 159 SKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS 218
             NG  N     + I  S +D G  +  P  GS NF FSG+   + DSD EE +SV+S+S
Sbjct: 195 KHNGDKNASPKVVPIT-SVDDTG-CLTKPDGGSMNFCFSGLH-DNEDSDGEETESVVSES 251

Query: 219 -VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQ 277
            V VGKYHV+ S + IL+SI  +YGDI A+C+LES  MR+YY+EC+C VVQELQST +MQ
Sbjct: 252 RVPVGKYHVKESFAPILRSIFEKYGDIGASCHLESVVMRSYYVECVCFVVQELQSTPIMQ 311

Query: 278 MTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST 337
           +TK+K+KE+MA+LKDVESAQ+ V WLR+I++EI+E IE   +H   + AKAN    +ES 
Sbjct: 312 LTKSKIKELMAILKDVESAQLRVAWLRSIVDEITENIELIDEHCVAETAKANSDREVESL 371

Query: 338 KKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKS 397
            KELES +  LA KE+EV  +K  +   + RLS+LEL+S  L++ I + +SKV     KS
Sbjct: 372 NKELESNLEILAQKEQEVTDIKTRIEAIRERLSELELKSCDLDKNILSIKSKVDNLDSKS 431

Query: 398 LADEIL 403
           L DE++
Sbjct: 432 LLDELV 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574151|ref|XP_003555215.1| PREDICTED: uncharacterized protein LOC100811116 [Glycine max]

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 167/428 (39%), Positives = 235/428 (54%), Gaps = 45/428 (10%)

Query: 3   AENGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKKKL--------GSWSFGRKNK 54
           AE+GRV  NC+ A NPYHEC  AC+++I +    K +  KK+             G+K K
Sbjct: 2   AEHGRVMANCVYAPNPYHECTEACVQRIKEAKPGKPSKTKKVFKDYRRSVTDGELGKKMK 61

Query: 55  ASDSQP-GTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSRPEHFSRE-- 111
               +P G P             QKA+     S N+ ++K      K  S+PE    +  
Sbjct: 62  EEKRRPSGCPKASNPYHVCDEYCQKADSG-TMSLNFDRRK------KVGSKPELPVLDSV 114

Query: 112 -------IHPEDHS--------LNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGA 156
                  I+  D S          KE+ +S + +P S  I + D+   P    V S    
Sbjct: 115 PPSKIGAIYLSDASSPLSNYSEKTKEESKSNELIPVSGEIHVLDVM--PTNHKVQS---- 168

Query: 157 SPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVIS 216
               NG  N     + I  S +D G  +  P  GS NF  SG+   + DSD  E +SV+S
Sbjct: 169 --KHNGDKNASPKVVPIT-SVDDTG-CLTKPDGGSMNFCLSGLH-DNEDSDGGETESVVS 223

Query: 217 DS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSL 275
           +S V VGKYHV+ S + IL+SI  +YGDI A+C+LES  MR+YY+EC+C VVQELQST +
Sbjct: 224 ESRVPVGKYHVKESFAPILRSIFEKYGDIGASCHLESVVMRSYYVECVCFVVQELQSTPI 283

Query: 276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLE 335
           MQ+ K+K+ E+MA+LKDVESAQ+ V WLRNI++EI+E IE   +H   + AKAN    +E
Sbjct: 284 MQLAKSKIMELMAILKDVESAQLRVAWLRNIVDEIAENIELIDEHCMAEMAKANSDREME 343

Query: 336 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 395
           +  KELES +  LA KE+EV  +K  + + +  LS+LEL+S+ L + I + +SKV     
Sbjct: 344 TLNKELESNLESLAQKEQEVTDIKTRIEEIREHLSELELKSSDLAKNILSIKSKVDNLDS 403

Query: 396 KSLADEIL 403
           KSL DE++
Sbjct: 404 KSLLDELV 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334227|ref|NP_001078494.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661068|gb|AEE86468.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 162/425 (38%), Positives = 234/425 (55%), Gaps = 68/425 (16%)

Query: 5   NGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKK--KLGSWS--FGRKNKASDSQP 60
           N + HP+C+ A NP+HEC  ACLEKIAQGH  K T K+  +L S+S  FGRK K S+SQP
Sbjct: 19  NRKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQP 78

Query: 61  GTPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPED 116
            TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D
Sbjct: 79  PTPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDD 134

Query: 117 HSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHS 176
              +K + + +Q++P S N  + D SK      V+  PG     NGK             
Sbjct: 135 FFNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK------------- 174

Query: 177 TEDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS- 218
             +GGE        +R FSF  +  + G                    + + +SV+SD+ 
Sbjct: 175 IGEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTF 226

Query: 219 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQM 278
           VSVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q+
Sbjct: 227 VSVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQL 286

Query: 279 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTK 338
           +K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ +
Sbjct: 287 SKVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKR 340

Query: 339 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 398
           +ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS 
Sbjct: 341 EELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSF 396

Query: 399 ADEIL 403
            DE+L
Sbjct: 397 IDELL 401

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236270|ref|NP_195237.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|30690215|ref|NP_849495.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|14326527|gb|AAK60308.1|AF385717_1 AT4g35110/M4E13_160 [Arabidopsis thaliana] gi|2924521|emb|CAA17775.1| putative protein [Arabidopsis thaliana] gi|7270462|emb|CAB80228.1| putative protein [Arabidopsis thaliana] gi|22137306|gb|AAM91498.1| AT4g35110/M4E13_160 [Arabidopsis thaliana] gi|23397133|gb|AAN31850.1| unknown protein [Arabidopsis thaliana] gi|332661066|gb|AEE86466.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661067|gb|AEE86467.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 162/425 (38%), Positives = 234/425 (55%), Gaps = 68/425 (16%)

Query: 5   NGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKK--KLGSWS--FGRKNKASDSQP 60
           N + HP+C+ A NP+HEC  ACLEKIAQGH  K T K+  +L S+S  FGRK K S+SQP
Sbjct: 4   NRKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQP 63

Query: 61  GTPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPED 116
            TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D
Sbjct: 64  PTPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDD 119

Query: 117 HSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHS 176
              +K + + +Q++P S N  + D SK      V+  PG     NGK             
Sbjct: 120 FFNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK------------- 159

Query: 177 TEDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS- 218
             +GGE        +R FSF  +  + G                    + + +SV+SD+ 
Sbjct: 160 IGEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTF 211

Query: 219 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQM 278
           VSVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q+
Sbjct: 212 VSVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQL 271

Query: 279 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTK 338
           +K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ +
Sbjct: 272 SKVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKR 325

Query: 339 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 398
           +ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS 
Sbjct: 326 EELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSF 381

Query: 399 ADEIL 403
            DE+L
Sbjct: 382 IDELL 386

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186516425|ref|NP_001119119.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana] gi|332661069|gb|AEE86469.1| phospholipase-like (PEARLI 4) family protein [Arabidopsis thaliana]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 162/425 (38%), Positives = 234/425 (55%), Gaps = 68/425 (16%)

Query: 5   NGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKK--KLGSWS--FGRKNKASDSQP 60
           N + HP+C+ A NP+HEC  ACLEKIAQGH  K T K+  +L S+S  FGRK K S+SQP
Sbjct: 16  NRKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQP 75

Query: 61  GTPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPED 116
            TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D
Sbjct: 76  PTPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDD 131

Query: 117 HSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHS 176
              +K + + +Q++P S N  + D SK      V+  PG     NGK             
Sbjct: 132 FFNHKPEKKPSQTIPLSSN-NLVDQSKV-----VSPKPGIQ-EHNGK------------- 171

Query: 177 TEDGGEDIPSPADGSRNFSFSGIDLASGDSD-----------------DEEAQSVISDS- 218
             +GGE        +R FSF  +  + G                    + + +SV+SD+ 
Sbjct: 172 IGEGGE--------TRLFSFLSLPRSPGKESNDDFSDDDDENNNEIGVELDLESVMSDTF 223

Query: 219 VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQM 278
           VSVGKY VR+  S+IL ++I ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q+
Sbjct: 224 VSVGKYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQL 283

Query: 279 TKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTK 338
           +K KVKEM+AVLKD+ES  I+V WLR++L       EF+   + ++  K     L+++ +
Sbjct: 284 SKVKVKEMLAVLKDLESVNIEVAWLRSVLE------EFAQSQEDVENEKERHDGLVKAKR 337

Query: 339 KELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 398
           +ELE+Q  +L   EKEV  +K  + +T+A++ ++E E  R+E++      K+ KF  KS 
Sbjct: 338 EELEAQETDLVRMEKEVVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSF 393

Query: 399 ADEIL 403
            DE+L
Sbjct: 394 IDELL 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798414|ref|XP_002867091.1| hypothetical protein ARALYDRAFT_353319 [Arabidopsis lyrata subsp. lyrata] gi|297312927|gb|EFH43350.1| hypothetical protein ARALYDRAFT_353319 [Arabidopsis lyrata subsp. lyrata]

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 157/408 (38%), Positives = 238/408 (58%), Gaps = 34/408 (8%)

Query: 5   NGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKK--KLGSWS--FGRKNKASDSQP 60
           N + HP+C+ A NP+HEC  ACLE+IAQGH  K T K+  +L S+S  FGRK K S SQP
Sbjct: 4   NRKAHPDCVYADNPFHECASACLERIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESHSQP 63

Query: 61  GTPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPED 116
            +PL+ R       G   +N         P    KKK+ SE+ KS +     S    P+D
Sbjct: 64  PSPLSARPYQNGRGGFANSNSPKVHHSVAPSVSVKKKIVSESNKSLTS----SSSGDPDD 119

Query: 117 HSLNKEKVRSTQSVPPSENIKMNDMSKSPPKESVTSLPGASPSKNGKDNKVQAPIEIHHS 176
              +K + + +Q++P S N  ++      PK  +    G   +  G + ++ + + +  S
Sbjct: 120 FFNHKPEKKPSQTIPLSSNNLVDQSKAVSPKPGIQEHDGKIGA--GGETRLFSFLSLPRS 177

Query: 177 TEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRASISSILQ 235
            E+   D  +  D   N    G++L        + +SV+SD+ VSVGKY VR+  S+IL 
Sbjct: 178 HEEESNDDYTDDDEENNNEI-GVEL--------DLESVMSDTFVSVGKYRVRSGSSTILS 228

Query: 236 SIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES 295
           +II ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++K KVKEM+AVLKD+ES
Sbjct: 229 AIIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLSKIKVKEMLAVLKDLES 288

Query: 296 AQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV 355
             I+V WLR++L E ++++E        +  K     L+++ K+ELE+Q  +L   EKEV
Sbjct: 289 VNIEVAWLRSVLEEFAQSLE------DAENEKERHDGLVKAKKEELEAQETDLVRMEKEV 342

Query: 356 AGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403
           A  +  + +T+A++ ++E E +RLE++      K+ KF  KS  DE+L
Sbjct: 343 AEARLRIEETRAQMVEIEAERSRLEKM----GFKMEKFKGKSFIDELL 386

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2131611	401	AT4G35110 "AT4G35110" [Arabido	0.925	0.930	0.378	1.2e-58
TAIR|locus:2039435	382	AT2G16900 "AT2G16900" [Arabido	0.915	0.965	0.378	3.5e-52
TAIR|locus:2047122	748	pEARLI4 "AT2G20960" [Arabidops	0.615	0.331	0.337	6e-41
TAIR|locus:2121169	523	AT4G38560 "AT4G38560" [Arabido	0.481	0.370	0.384	6.4e-41
TAIR|locus:2046992	530	AT2G20950 [Arabidopsis thalian	0.531	0.403	0.359	1.1e-35
TAIR|locus:2121159	612	AT4G38550 [Arabidopsis thalian	0.531	0.349	0.369	1.8e-35
TAIR|locus:2147937	241	AT5G11140 "AT5G11140" [Arabido	0.461	0.771	0.382	1.5e-28
TAIR|locus:2085385	343	AT3G58270 "AT3G58270" [Arabido	0.481	0.565	0.258	3.7e-06
TAIR|locus:2085460	453	AT3G58220 "AT3G58220" [Arabido	0.724	0.644	0.229	1.7e-05
TAIR|locus:2085325	316	AT3G58400 "AT3G58400" [Arabido	0.394	0.503	0.241	2.4e-05

TAIR|locus:2131611 AT4G35110 "AT4G35110" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 155/409 (37%), Positives = 227/409 (55%)

Query:     5 NGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKK--KLGSWS--FGRKNKASDSQP 60
             N + HP+C+ A NP+HEC  ACLEKIAQGH  K T K+  +L S+S  FGRK K S+SQP
Sbjct:    19 NRKAHPDCVYADNPFHECASACLEKIAQGHVKKNTKKQSSRLLSFSGSFGRKKKESNSQP 78

Query:    61 GTPLTPRAVDKVAVGGQKANGQHARSENYP----KKKVESENGKSFSRPEHFSREIHPED 116
              TPL+ R       G    N         P    KKK+ SE   SF+     S    P+D
Sbjct:    79 PTPLSARPYQNGRGGFANGNSPKVHHSVAPPASVKKKIVSETKNSFTS----SSSGDPDD 134

Query:   117 HSLNKEKVRSTQSVPPSENIKMNDMSKS-PPKESVTSLPGASPSKNGKDNKVQAPIEIHH 175
                +K + + +Q++P S N  + D SK   PK  +    G      G + ++ + + +  
Sbjct:   135 FFNHKPEKKPSQTIPLSSN-NLVDQSKVVSPKPGIQEHNGKIGE--GGETRLFSFLSLPR 191

Query:   176 STEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRAXXXXXX 234
             S      D  S  D   N    G++L        + +SV+SD+ VSVGKY VR+      
Sbjct:   192 SPGKESNDDFSDDDDENNNEI-GVEL--------DLESVMSDTFVSVGKYRVRSGSSTIL 242

Query:   235 XXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 294
                  ++GDIA NC LES+SMR+ YLECLCS++QEL+ST + Q++K KVKEM+AVLKD+E
Sbjct:   243 SAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLSKVKVKEMLAVLKDLE 302

Query:   295 SAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE 354
             S  I+V WLR++L E      F+   + ++  K     L+++ ++ELE+Q  +L   EKE
Sbjct:   303 SVNIEVAWLRSVLEE------FAQSQEDVENEKERHDGLVKAKREELEAQETDLVRMEKE 356

Query:   355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403
             V  +K  + +T+A++ ++E E  R+E++      K+ KF  KS  DE+L
Sbjct:   357 VVEVKRRIEETRAQMVEIEAERLRMEKM----GFKMEKFKGKSFIDELL 401

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2039435 AT2G16900 "AT2G16900" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 155/409 (37%), Positives = 220/409 (53%)

Query:     5 NGRVHPNCLNASNPYHECGMACLEKIAQGHGHKETPKK--KLGSW--SFGRKNKASDSQP 60
             N + HP+C  +SNP+HEC   CLEKI+QG G+K + K+  K+ S   SFG+K   ++SQP
Sbjct:     4 NRKAHPDCRYSSNPFHECASDCLEKISQGRGNKNSKKQGSKILSLPGSFGKKK--TESQP 61

Query:    61 GTPLTPRAVDKVAVGGQKANGQHARSENYPKKKVESENGKSFSR--PEHFSREIHPEDHS 118
              +PL+ R     A    K   Q   S    KK    E  KS      +  S +++ ++ S
Sbjct:    62 PSPLSTRNYQNGAANTPKVR-QSRPSPVAMKKTPVPEANKSLHSLSSDGISIDLNGQNDS 120

Query:   119 LNKEKVRSTQSVPPSENIKMNDMSK--SP-PKESVTSLPGASPSKNGKDNKVQAPIEIHH 175
              N ++ + +++VP S N  M D  K  SP P+    S    + S+    N V  P     
Sbjct:   121 FNHKQEKPSRTVPLSPN-SMADRGKPLSPRPQGHEHSGKNDTASEISLFNVVSPP---RS 176

Query:   176 STEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQSVISDS-VSVGKYHVRAXXXXXX 234
                D  +D     D   N    G++L        +  SV+SDS VSVGKY V +      
Sbjct:   177 CANDDDDD-----DDENNGYEEGVEL--------DLISVMSDSCVSVGKYRVNSSVSTIL 223

Query:   235 XXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVE 294
                  ++GDIAANC LES SMR+ YLECLCS++QEL ST + Q+T+ KVKEM+AVLKD+E
Sbjct:   224 QSIIDKHGDIAANCKLESASMRSRYLECLCSLMQELGSTPVGQLTELKVKEMVAVLKDLE 283

Query:   295 SAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKE 354
             S  IDV W+R++L E      F+   +  D+ K     L+ S K+E+E Q  +LA  EKE
Sbjct:   284 SVNIDVGWMRSVLEE------FAQYQENTDSEKERQEGLVRSKKQEMEIQEADLARIEKE 337

Query:   355 VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADEIL 403
             VA  +  V + KA L++LE E  R+E++      KV K+  K+  DE+L
Sbjct:   338 VAEARLRVEEMKAELAELETERLRMEEM----GFKVEKYKGKTFLDELL 382

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006979 "response to oxidative stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2047122 pEARLI4 "AT2G20960" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 6.0e-41, Sum P(2) = 6.0e-41
 Identities = 88/261 (33%), Positives = 139/261 (53%)

Query:   148 ESVTSLPGASPSKNGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSD 207
             E   S+   + SK+G   +     E  H   +   ++P   D S++FS + I    G   
Sbjct:   496 EHTVSIYAETTSKSGSSEQ-----EEQHKANNEPPELP---DESQSFSLAEISRMKGIIT 547

Query:   208 DEEA----QSVISDS-VSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLEC 262
             + E     QS++S+S VSVG+Y VRA           ++GDIA+   L+S + R+YYL+ 
Sbjct:   548 NNEIRDVMQSILSESYVSVGQYKVRASVSTTLQHILQKHGDIASGSKLQSLATRSYYLDM 607

Query:   263 LCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQT 322
             L SVV ELQ+T L  + +++V EM+A++KD+ES +I   WL+ +L EI EA++   +H+ 
Sbjct:   608 LASVVFELQTTPLKYLKESRVVEMVAIVKDIESVKIKAGWLKPVLEEIVEAVKHYDEHKM 667

Query:   323 IDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQI 382
                 K      +   K+E E Q+ EL  KEK++   +  + +  A+L DL+++  RL + 
Sbjct:   668 SVVEKEVWERDVLLAKQETEKQVKELGEKEKKIKEWRAKMTEMAAKLGDLDMKRARLHKS 727

Query:   383 IQATQSKVTKFSQKSLADEIL 403
                  SKV KF  K L   IL
Sbjct:   728 FTFLSSKVDKFQGKPLLQGIL 748

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2121169 AT4G38560 "AT4G38560" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 6.4e-41, Sum P(3) = 6.4e-41
 Identities = 75/195 (38%), Positives = 112/195 (57%)

Query:   209 EEAQSVISDS-VSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECLCSVV 267
             EE +S+IS+S VSVG Y VRA           ++GDIA+   L+S   ++Y LE L +VV
Sbjct:   328 EEMKSMISESYVSVGSYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVV 387

Query:   268 QELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAK 327
              ELQST L ++ +A+V EM++V+ D ES +I   WLR ILNEI EA      H+T    K
Sbjct:   388 LELQSTPLKKLKQARVLEMLSVVIDAESVKIRAGWLREILNEILEAAHHYDGHETTVVEK 447

Query:   328 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 387
                   +   ++E++    E+ LKEKE    ++ V +   RL +L+++  RLE+ +    
Sbjct:   448 EGRERDMLLEREEMKKIQEEVRLKEKEAKDFRKGVMEMAGRLGELKMKRARLEKRLAFLS 507

Query:   388 SKVTKFSQKSLADEI 402
             SKV KF  +SL + +
Sbjct:   508 SKVEKFEGESLLENV 522

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2046992 AT2G20950 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 78/217 (35%), Positives = 123/217 (56%)

Query:   185 PSPADGSRNFSFSGIDLASG--DSDDEEAQSVISDS-VSVGKYHVRAXXXXXXXXXXXRY 241
             P   D S++F+   I    G      EE Q  IS++ VSV  Y VR            ++
Sbjct:   311 PELPDESQSFTMQEIARMRGLQSYGKEEIQLAISETYVSVANYKVRMSIAATLEAIIDKH 370

Query:   242 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVD 301
             GDIAA+  L+S S R++YLE L + V EL+ST+L  +TK +V E+ AV+KD++S +IDV 
Sbjct:   371 GDIAASSKLQSTSTRSFYLESLAAAVMELKSTALRDLTKTRVAEIAAVVKDMDSVKIDVS 430

Query:   302 WLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKES 361
             WL+  + E++EA+E+  ++ T    +  C   + + KKE+E    EL  +EKE    +E 
Sbjct:   431 WLKTAVTELAEAVEYYGKYDTAKIVREECDREMTAGKKEMEEMREELRRREKETKECRER 490

Query:   362 VAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 398
             V +   RL  LE++  R+++ ++  +SKV KF   S+
Sbjct:   491 VTELAGRLGQLEMKDVRVKKNLELYESKVLKFDGHSV 527

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2121159 AT4G38550 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
 Identities = 81/219 (36%), Positives = 126/219 (57%)

Query:   185 PSPADGSRNFSFSGIDLASG----DSDDEEAQSVISDS-VSVGKYHVRAXXXXXXXXXXX 239
             P   D S++F+   I    G    +S  EE+QS+IS++ VSV  Y VR            
Sbjct:   390 PELPDESQSFTMQEITKMRGLKNYESGKEESQSMISEAYVSVANYRVRQSVSETLQAIID 449

Query:   240 RYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQID 299
             ++GDIAA+  L++ + R+YYLE L +VV EL+ T L  +TK +V E+ AV+KD+ES +I+
Sbjct:   450 KHGDIAASSKLQAMATRSYYLESLAAVVMELKKTVLRDLTKTRVAEIAAVVKDMESVKIN 509

Query:   300 VDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLK 359
             V WL+  + E++EA+E+  Q+ T    K  C   L + K E+E    EL  +EKE+   +
Sbjct:   510 VSWLKTAVTELAEAVEYFGQYDTAKVEKEVCERDLTAKKGEMEEMTAELVKREKEIKECR 569

Query:   360 ESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL 398
             E V     RL  LE++ ++L + +   QSKV KF  +++
Sbjct:   570 EKVTVVAGRLGQLEMKGSKLNKNLDLFQSKVHKFQGEAV 608

GO:0005634 "nucleus" evidence=ISM

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2147937 AT5G11140 "AT5G11140" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 72/188 (38%), Positives = 113/188 (60%)

Query:   217 DSVSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLM 276
             D VSVG+Y V+A           +YGDI +N  L+S S R Y+LE L  VV ELQST L 
Sbjct:    55 DVVSVGEYKVKASLSSTLQSIFDKYGDITSNSKLQSLSTRTYHLETLAEVVIELQSTPLR 114

Query:   277 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE-FSTQHQTIDAAKANCVNLLE 335
             ++++++  E++A++ D+E+A+I V WLR++L E+ EA   F      +   KA    LL 
Sbjct:   115 RLSESRATEILAIVDDIETAKIRVGWLRSVLEEVLEATRYFDRCEMAVMEKKAGEHRLLL 174

Query:   336 STKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ 395
             + K+E+E  + +LA KEKE+   +E + KT  +L  LE++   L++ +   +SKV KF  
Sbjct:   175 A-KQEMELSLKKLAEKEKEMKEFREKLMKTTGKLGSLEMKRTCLDKRLVFLRSKVEKFQG 233

Query:   396 KSLADEIL 403
             +S+  +IL
Sbjct:   234 QSVFQDIL 241

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085385 AT3G58270 "AT3G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 56/217 (25%), Positives = 105/217 (48%)

Query:   166 KVQAPIEIHHST-----EDGGEDIPSPADGSRNFSFSGIDLASG-DSDD--EEAQSVISD 217
             K+  P+E   +T     E    D+P  ++ +   + S +D   G +S+D  +EA SV  +
Sbjct:   139 KLDVPVESEETTTKALSELEENDVPEESEETTK-ALSKVDENDGAESNDSLKEASSV-KE 196

Query:   218 SVSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQEL-QSTSLM 276
             S+ V  + V             R+ DIA+    ++  +R+ Y+  L S+++ + QST   
Sbjct:   197 SMDVNGFRVLPSQVETVSCIFERHPDIASEFGPKNQHLRSAYMNVLLSLIKTMCQSTQ-- 254

Query:   277 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLES 336
             +++K  + +  A L  +  A ++++WL   L E+SE      + +  +A +   V+ +E 
Sbjct:   255 ELSKDDLSDADAALAYLTDAGLNLNWLEEKLEEVSE------KKENEEAGETR-VHEIEE 307

Query:   337 TKKELESQMNEL-ALKEKEVAGLKESVAKTKARLSDL 372
               KEL+ + + L A  EKE A +  SVA+      D+
Sbjct:   308 ELKELKLKCSNLEAQLEKEKADV--SVARAPFSFDDI 342

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085460 AT3G58220 "AT3G58220" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 73/318 (22%), Positives = 123/318 (38%)

Query:    68 AVDKVAVGGQKANGQHARSENYPKKKVES---ENGKSFS-RP-EHFSREIHPEDHSLNKE 122
             A  +++  G K   ++   E Y K+  E    E+ + +  RP E F  E   E     +E
Sbjct:   146 AAIEISEEGSKEGYEYESEEVYKKESEEGYKYESEEDYEKRPIERFEYESEAESKKDYEE 205

Query:   123 KVRSTQSVPPSENIKMNDMSKSPPK--ESVTSLPGASPSKNGKDNKVQAPIEIHH---ST 177
             + R       SE +   D  + P +  E  +       S+ G   + +   E      S 
Sbjct:   206 RTRGGFEYE-SEPVSKKDYEERPRESFEYESEAESKKDSEEGSRERYEYESEEESKKDSE 264

Query:   178 EDGGEDIPSPAD-GSR---NFSFSGIDLASGDSDDEEAQSVISDSVSVGKYHVRAXXXXX 233
              D GE+    ++ GSR       +   + S DS ++  Q  + +++ +  + V       
Sbjct:   265 NDCGEESEKDSEEGSRPLKKIKRNDDGVKSNDSVNKTQQ--VKETMDINGFQVLPSQVTL 322

Query:   234 XXXXXXRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDV 293
                   +Y DIA   N ++  +R   +  L S+++ L   S  +++   + E    L  V
Sbjct:   323 VSRILKKYPDIALGFNAKNRHLRTACMNVLISLIETL-CQSPQELSDEDMDEADNALVYV 381

Query:   294 ESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEK 353
             + A   VDWL   L E+ E        QT    K     L E  K+  +  ++  AL EK
Sbjct:   382 QDAGFKVDWLDKKLKEVKEK---KVVEQT---GKTRIQELEEELKEFKQKCLDREALLEK 435

Query:   354 EVAGLKESVAKTKARLSD 371
             E A  K   A+    L D
Sbjct:   436 EKA--KVLAARASLTLDD 451

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085325 AT3G58400 "AT3G58400" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 41/170 (24%), Positives = 83/170 (48%)

Query:   204 GDSDDEEAQSVISDSVSVGKYHVRAXXXXXXXXXXXRYGDIAANCNLESNSMRAYYLECL 263
             GD D  E  S + +++ V  + +             R+ +IA+  + +++S+R  Y+  L
Sbjct:   156 GDVDVSEGISTVKETIHVNGFQLLPSQAKSVSHIFERHPEIASEIHPKNSSLRTGYMSLL 215

Query:   264 CSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTI 323
              S+++ L S S  +++K  + ++   +  +++A   +DWL N L E++       Q +  
Sbjct:   216 LSLIETL-SQSPQELSKDDLCDVYIAIGCMKNAGFKLDWLENKLYEVA-------QKKED 267

Query:   324 DAAKANCVNLLESTKKELESQMNEL-ALKEKEVAGLKESVAKTKARLSDL 372
             D A    +  +E   K+L+ + +++ AL E+E A  K S AK      D+
Sbjct:   268 DEAGETRLREMEEKLKDLKLKCSKMEALVEEEKA--KVSAAKAHLSFDDV 315

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IX0308 hypothetical protein (541 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
pfam05278	234	pfam05278, PEARLI-4, Arabidopsis phospholipase-lik	1e-65
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.002

>gnl|CDD|218534 pfam05278, PEARLI-4, Arabidopsis phospholipase-like protein (PEARLI 4)

 Score =  208 bits (531), Expect = 1e-65
 Identities = 99/193 (51%), Positives = 134/193 (69%), Gaps = 1/193 (0%)

Query: 210 EAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQ 268
           + QSV+SDS VSVGKY VRAS+S+ LQ+II ++GDIA+N  L+S S R+YYLECL SVVQ
Sbjct: 42  DLQSVMSDSYVSVGKYRVRASVSTTLQAIIDKHGDIASNSKLQSLSTRSYYLECLASVVQ 101

Query: 269 ELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKA 328
           ELQST L Q+++++VKEM+AV+KD+ES +I V WLR++L E +EA+E+  Q +T    K 
Sbjct: 102 ELQSTPLRQLSESRVKEMLAVVKDLESVKIRVGWLRSVLEEFAEAVEYFDQQETAVVEKE 161

Query: 329 NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQS 388
                +   K+E+E Q  EL  KEKEV   +E V +   RL +LE++  RLE+ +    S
Sbjct: 162 RHERDVLLKKQEMEKQEAELVRKEKEVKEFREKVEEMAGRLGELEMKRLRLEKRLDFLGS 221

Query: 389 KVTKFSQKSLADE 401
           KV KF  KS  DE
Sbjct: 222 KVEKFKGKSFLDE 234

This family contains several phospholipase-like proteins from Arabidopsis thaliana which are homologous to PEARLI 4. Length = 234

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 269 ELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEF-STQHQTIDAAK 327
           E +   L    +   +E+ ++  ++ S +  ++ LR  L E+   +E    +   ++   
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732

Query: 328 ANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQ 387
               + LE  ++ELE    EL   ++ +  L+E +   +  L+ L+ E   LE+  QA Q
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792

Query: 388 SKVTKFSQK 396
            ++ +  ++
Sbjct: 793 EELEELEEE 801

Length = 1163

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 265 SVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTID 324
            V++ L    ++ +   K +     L+ + S    +    + L       + +   +   
Sbjct: 20  EVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLP--KLNPLREEKK 77

Query: 325 AAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE 380
                 V  LE   K++E ++ ++   EKE+  L+E +++ +  + +LE E  RLE
Sbjct: 78  KVS---VKSLEELIKDVEEELEKI---EKEIKELEEEISELENEIKELEQEIERLE 127

Length = 646

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	100.0
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	99.73
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	98.05
PRK11637	428	AmiB activator; Provisional	91.21
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.47
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	90.33
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.31
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	88.38
PRK11637	428	AmiB activator; Provisional	87.91
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	87.7
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.54
PF10186	302	Atg14: UV radiation resistance protein and autopha	87.08
PRK13182	175	racA polar chromosome segregation protein; Reviewe	86.52
PHA02562	562	46 endonuclease subunit; Provisional	86.3
PHA02562	562	46 endonuclease subunit; Provisional	85.61
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.34
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	84.89
COG3937	108	Uncharacterized conserved protein [Function unknow	84.04
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	83.94
PRK04863	1486	mukB cell division protein MukB; Provisional	83.86
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	83.52
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	83.22
PRK02224	880	chromosome segregation protein; Provisional	83.0
PRK01156	895	chromosome segregation protein; Provisional	82.23
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	81.85
PF05600	507	DUF773: Protein of unknown function (DUF773); Inte	81.36
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	81.14
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.01
cd04776	118	HTH_GnyR Helix-Turn-Helix DNA binding domain of th	80.7
PRK02224	880	chromosome segregation protein; Provisional	80.45

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=100.00  E-value=1.2e-62  Score=473.03  Aligned_cols=216  Identities=50%  Similarity=0.738  Sum_probs=210.3

Q ss_pred             CCCCCCceeeeccccccCC---CCCcccccccccce-eEeccEEeeccchHHHHHHHhhcccccccCcccchhHHHHHHH
Q 015660          186 SPADGSRNFSFSGIDLASG---DSDDEEAQSVISDS-VSVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLE  261 (403)
Q Consensus       186 ~~~~es~~fs~~~~~~~~g---~~d~eE~~Sv~~et-v~VnGfqVl~Sqv~~v~~IFeKHpDIAsnf~lKs~~lRs~ym~  261 (403)
                      .-|++|++|+|++|.+|.|   .++++|++|+++++ |+||||||++||+++|++||+||||||+||+++|++||++||+
T Consensus        50 ~l~~~s~sftl~~~~~~~~~~~~~~~~e~~Sv~ses~V~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe  129 (269)
T PF05278_consen   50 ELPDESQSFTLSEIECMKGLKTNEGDEEMSSVISESIVSVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLE  129 (269)
T ss_pred             CCCCcCccccHHHHHHHhcccccccchhhhhccccceeeECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHH
Confidence            4678999999999999886   46778999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 015660          262 CLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKEL  341 (403)
Q Consensus       262 ~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~EL  341 (403)
                      +||+||++||++|+++||+++|.+|+++|.||++|||+|+|||++|+||.++++++++|++++++|+++++.++..+.||
T Consensus       130 ~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~EL  209 (269)
T PF05278_consen  130 CLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEEL  209 (269)
T ss_pred             HHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccchhhh
Q 015660          342 ESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSLADE  401 (403)
Q Consensus       342 Ee~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl~D~  401 (403)
                      +.++++|+++++++++++.||++|++||++||+++++|+++|.+++|||++|+||||+|+
T Consensus       210 e~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~sl~~~  269 (269)
T PF05278_consen  210 EELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKSLLDE  269 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence            999999999999999999999999999999999999999999999999999999999985

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.73  E-value=4e-17  Score=154.80  Aligned_cols=175  Identities=20%  Similarity=0.229  Sum_probs=134.3

Q ss_pred             CccccccccccccCCCCCCCCCCCCCceeeeccccccCCCCCccccc-c--cc-cceeEe----ccEEeeccchHHHHHH
Q 015660          166 KVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGIDLASGDSDDEEAQ-S--VI-SDSVSV----GKYHVRASISSILQSI  237 (403)
Q Consensus       166 ~~~~~~p~~~~~~~~g~~~~~~~~es~~fs~~~~~~~~g~~d~eE~~-S--v~-~etv~V----nGfqVl~Sqv~~v~~I  237 (403)
                      |-..+.|++...+..|+++..  ++...|+-+.+.+.-+..|..+.. +  .+ .+..++    |||+|+++|++++..|
T Consensus        94 g~~~~~~~~~~~~~~~g~~~~--~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~  171 (297)
T KOG1987|consen   94 GFGKMLPLTLLIDCSNGFLVA--HKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERI  171 (297)
T ss_pred             CcccccChHHhhcccCcEEEc--CceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHh
Confidence            345678888888887887666  455555555444433332221110 0  00 111334    9999999999999999


Q ss_pred             HhhcccccccCcccchhHHHHHHHHHHHHHHHHh--cchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHH
Q 015660          238 ISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ--STSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIE  315 (403)
Q Consensus       238 FeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~--~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare  315 (403)
                      |++||++|+.|+.+++++|..||+.||++|++++  +++ +.++..++.+|..++.+++.+||+||||.++++++.+.++
T Consensus       172 ~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~  250 (297)
T KOG1987|consen  172 FEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSL-QEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKK  250 (297)
T ss_pred             hcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccH-HHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999  888 9999999999999999999999999999999999988873


Q ss_pred             hhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015660          316 FSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG  357 (403)
Q Consensus       316 ~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d  357 (403)
                                    .+...+.+.+++++++..+..+......
T Consensus       251 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (297)
T KOG1987|consen  251 --------------KDLWYEIRLQELEEELKSLKDKCSDLEG  278 (297)
T ss_pred             --------------HHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence                          1134556666667777777777666544

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=98.05  E-value=0.0003  Score=66.03  Aligned_cols=128  Identities=20%  Similarity=0.332  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHH
Q 015660          258 YYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLEST  337 (403)
Q Consensus       258 ~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~  337 (403)
                      ..|=...+|++...+.-+.+ +...+..-..+|.+|+.-||+|.-|+.||+++...+.   .+..+.+.++..+..++..
T Consensus        47 Glm~~f~~l~e~v~~l~idd-~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~---~~~~~~e~~k~le~~~~~~  122 (190)
T PF05266_consen   47 GLMVTFANLAEKVKKLQIDD-SRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKD---DQEKLLEERKKLEKKIEEK  122 (190)
T ss_pred             HHHHHHHHHHHHHHHcccCC-cHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHH
Confidence            45677788888888888444 8999999999999999999999999999999887663   2222222212111122211


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhhh----HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660          338 ---KKELESQMNELALKEKEVAGL----KESVAKTKARLSDLELESNRLEQIIQATQSK  389 (403)
Q Consensus       338 ---~~ELEe~leeL~~kekev~d~----~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK  389 (403)
                         .+++|+.+.+|.++-.++.+.    +..-++....+.+|+-+...|.+.+.+++.+
T Consensus       123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~  181 (190)
T PF05266_consen  123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE  181 (190)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               223333333333333333221    1123334455666666666666666655543

>PRK11637 AmiB activator; Provisional

Probab=91.21  E-value=11  Score=39.07  Aligned_cols=55  Identities=25%  Similarity=0.391  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660          336 STKKELESQMNELALKEKE----VAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV  390 (403)
Q Consensus       336 ~~~~ELEe~leeL~~keke----v~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV  390 (403)
                      ....+++.+..+|....++    +..++..+.+....|.+|+....+|.+.|..++-..
T Consensus       198 ~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~~  256 (428)
T PRK11637        198 TLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREA  256 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444333    566666666667777777777777777776655433

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.47  E-value=2.1  Score=42.41  Aligned_cols=58  Identities=21%  Similarity=0.216  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhcc
Q 015660          337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFS  394 (403)
Q Consensus       337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~  394 (403)
                      ..+|-++.+++|.+++.++.+.++|+..++..+++|+.+..++.--+.+++-+.+.+.
T Consensus       147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            3334455566667777777777777777777777777777666655666666655543

>smart00787 Spc7 Spc7 kinetochore protein

Probab=90.33  E-value=15  Score=37.38  Aligned_cols=66  Identities=20%  Similarity=0.365  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccch
Q 015660          333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQKSL  398 (403)
Q Consensus       333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~kSl  398 (403)
                      .+..++.+|.+...++..+.+++.+.+.++.+...++.....+-..+...|..+.+.+++-.+.+.
T Consensus       205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~  270 (312)
T smart00787      205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF  270 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            344445566666666666666666666666666666666666666666666666666666665554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.31  E-value=14  Score=37.18  Aligned_cols=51  Identities=31%  Similarity=0.453  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660          333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQII  383 (403)
Q Consensus       333 ~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~  383 (403)
                      .++.++++|.+.-.++..+.+++.+.+.++.+..+++..+..+...+...|
T Consensus       210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI  260 (325)
T PF08317_consen  210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI  260 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443333333333333333333333333333333333

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=88.38  E-value=6.2  Score=35.46  Aligned_cols=37  Identities=14%  Similarity=0.411  Sum_probs=26.3

Q ss_pred             HHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 015660          359 KESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ  395 (403)
Q Consensus       359 ~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~  395 (403)
                      ++.+.++++-+.++..+...+...|..|..|+...++
T Consensus        88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~  124 (126)
T PF07889_consen   88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3366777777777777777777777777777776654

The region featured in this family is approximately 100 amino acids long.

>PRK11637 AmiB activator; Provisional

Probab=87.91  E-value=7.5  Score=40.13  Aligned_cols=15  Identities=13%  Similarity=0.131  Sum_probs=6.2

Q ss_pred             hHHHHHHHHHHHHHH
Q 015660          254 SMRAYYLECLCSVVQ  268 (403)
Q Consensus       254 ~lRs~ym~~Ll~LIe  268 (403)
                      .+|-..+-+|+.++-
T Consensus        19 ~~~~~~~~~ll~~~~   33 (428)
T PRK11637         19 AIRPILYASVLSAGV   33 (428)
T ss_pred             hhhhHHHHHHHHHHH
Confidence            344444444444333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=87.70  E-value=11  Score=45.06  Aligned_cols=51  Identities=4%  Similarity=0.114  Sum_probs=41.8

Q ss_pred             hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHHHHHHHHHhhhhhhhHHHH
Q 015660          276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTIDAA  326 (403)
Q Consensus       276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~  326 (403)
                      -.+++.+|..+...+..|++..=+++=|+.++..+......++.+......
T Consensus       215 ~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~  265 (1353)
T TIGR02680       215 PPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLR  265 (1353)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            679999999999999999999988888888888888777766666664333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.54  E-value=11  Score=42.40  Aligned_cols=126  Identities=17%  Similarity=0.242  Sum_probs=58.6

Q ss_pred             eeccchHHHHHHHhhccc--cc---ccCcccchhHHHHHHHHHHHHHHHHhcchh--hhccHHHHHHHHHHHhHHHhcCc
Q 015660          226 VRASISSILQSIISRYGD--IA---ANCNLESNSMRAYYLECLCSVVQELQSTSL--MQMTKAKVKEMMAVLKDVESAQI  298 (403)
Q Consensus       226 Vl~Sqv~~v~~IFeKHpD--IA---snf~lKs~~lRs~ym~~Ll~LIetL~~spl--~eLS~~dL~ea~~~L~dL~~agf  298 (403)
                      ..+++...++.||.+-..  |.   ++ +..++.- .-.+++|..-++.|..--+  +++-..+|..-...|....+.+ 
T Consensus       501 ~~~sF~~~Ik~lL~r~~~qPill~s~~-k~~~p~~-~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Q-  577 (717)
T PF10168_consen  501 SPPSFEKHIKSLLQRSSSQPILLKSSD-KSSSPSP-QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQ-  577 (717)
T ss_pred             ccchHHHHHHHHhcCCCCCCeecCCCc-cccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            358899999999986422  22   22 2222222 2245667777777754322  2334455555555566555543 


Q ss_pred             chhhhhhHHHHHHHH----HHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015660          299 DVDWLRNILNEISEA----IEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEV  355 (403)
Q Consensus       299 KvdWL~~KLeEV~Ea----re~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev  355 (403)
                       +.||..--+++...    .++.+++..+....+...++++...+.+...+-.|+..|+++
T Consensus       578 -l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~  637 (717)
T PF10168_consen  578 -LKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREF  637 (717)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence             33333222222211    123333444444444444444444444444333344444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=87.08  E-value=13  Score=35.21  Aligned_cols=12  Identities=42%  Similarity=0.496  Sum_probs=7.2

Q ss_pred             hhhhhHHHHHHH
Q 015660          301 DWLRNILNEISE  312 (403)
Q Consensus       301 dWL~~KLeEV~E  312 (403)
                      +=|+.+++++.+
T Consensus        37 ~~l~~~i~~~l~   48 (302)
T PF10186_consen   37 EELRRRIEEILE   48 (302)
T ss_pred             HHHHHHHHHHHH
Confidence            556666666555

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK13182 racA polar chromosome segregation protein; Reviewed

Probab=86.52  E-value=6.7  Score=36.78  Aligned_cols=61  Identities=5%  Similarity=0.067  Sum_probs=41.0

Q ss_pred             ccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhhhhh
Q 015660          242 GDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDWLRN  305 (403)
Q Consensus       242 pDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdWL~~  305 (403)
                      +++|.-+.+....+|.+|=.-++. +..-. +--+-.+++|| .....+..+..+|+.+.=++.
T Consensus         4 ~evA~~lGVS~~TLRrw~k~g~L~-~~R~~-~G~R~y~~~dl-~~L~~I~~l~~~Gm~i~~i~~   64 (175)
T PRK13182          4 PFVAKKLGVSPKTVQRWVKQLNLP-CEKNE-YGHYIFTEEDL-QLLEYVKSQIEEGQNMQDTQK   64 (175)
T ss_pred             HHHHHHHCcCHHHHHHHHHcCCCC-CCcCC-CCCEEECHHHH-HHHHHHHHHHHcCCCHHHHHH
Confidence            355666666666777776655542 11111 12477899999 789999999999998876544

>PHA02562 46 endonuclease subunit; Provisional

Probab=86.30  E-value=19  Score=37.74  Aligned_cols=45  Identities=13%  Similarity=0.257  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660          335 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL  379 (403)
Q Consensus       335 e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l  379 (403)
                      ...+..+++...++...+.++..+..+..+...+|.+++.+..++
T Consensus       347 ~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~  391 (562)
T PHA02562        347 STNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI  391 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.61  E-value=13  Score=38.79  Aligned_cols=93  Identities=13%  Similarity=0.218  Sum_probs=41.4

Q ss_pred             hcCcchhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHH-------HHH
Q 015660          295 SAQIDVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAK-------TKA  367 (403)
Q Consensus       295 ~agfKvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e-------~k~  367 (403)
                      .+.-++++|+..+.++....+-+..  .++..+......+...++++++...+..+.+.++..++..+.+       ..+
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~~~~~--~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~  255 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIKTYNK--NIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSA  255 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence            4455566777777776655532211  1111111122233344444444444444444444444444433       344


Q ss_pred             HHHHHHHhhhhHHHHHHHhhhh
Q 015660          368 RLSDLELESNRLEQIIQATQSK  389 (403)
Q Consensus       368 RL~~LE~ess~l~~~~~~~kSK  389 (403)
                      .|..++....+++..+..++.-
T Consensus       256 ~L~~l~~~~~~~~~~l~~~~~~  277 (562)
T PHA02562        256 ALNKLNTAAAKIKSKIEQFQKV  277 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555444433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.34  E-value=9.3  Score=42.86  Aligned_cols=61  Identities=21%  Similarity=0.273  Sum_probs=34.1

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHh
Q 015660          326 AKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQAT  386 (403)
Q Consensus       326 ~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~  386 (403)
                      +++...+.+..++.+++.++++|.+.+.+.+.++++-+.+.+|+.++.+.-..|.+++..+
T Consensus       559 ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v  619 (717)
T PF10168_consen  559 AREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV  619 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555566666666666666655555555555555555555555555554443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.89  E-value=6.4  Score=40.92  Aligned_cols=60  Identities=23%  Similarity=0.229  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 015660          330 CVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTK  392 (403)
Q Consensus       330 ~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~k  392 (403)
                      .++++++....+..++++|++-+++++.-..++.+++++   ||-+...|.+.++-+++||+.
T Consensus       219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~et---LEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  219 LRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKET---LEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHH
Confidence            344555555566667777888888777755555555544   455667777777778888876

>COG3937 Uncharacterized conserved protein [Function unknown]

Probab=84.04  E-value=7.9  Score=34.22  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=24.6

Q ss_pred             HHHHHHHHHH-HHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 015660          340 ELESQMNELA-LKEKEVAGLKESVAKTKARLSDLELES  376 (403)
Q Consensus       340 ELEe~leeL~-~kekev~d~~~rv~e~k~RL~~LE~es  376 (403)
                      .|+.++.++. ..+++|.+.++||.+.+.++..||.+.
T Consensus        69 ~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~  106 (108)
T COG3937          69 KIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL  106 (108)
T ss_pred             HHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555554444 234557777888888888888888764

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=83.94  E-value=17  Score=37.05  Aligned_cols=54  Identities=20%  Similarity=0.263  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHH-HhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015660          304 RNILNEISEAI-EFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAG  357 (403)
Q Consensus       304 ~~KLeEV~Ear-e~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d  357 (403)
                      +..|.||-|.. +-+-..++|+.+|.+.--.+..++.+|+++-+.|+++.++..+
T Consensus        83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e  137 (302)
T PF09738_consen   83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE  137 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788887765 5566788999999998888999999999999999999888765

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=83.86  E-value=42  Score=40.93  Aligned_cols=157  Identities=13%  Similarity=0.186  Sum_probs=72.8

Q ss_pred             EEeeccchHHHHHHHhh-cccccccCcccchhHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHhcCcchhh
Q 015660          224 YHVRASISSILQSIISR-YGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVESAQIDVDW  302 (403)
Q Consensus       224 fqVl~Sqv~~v~~IFeK-HpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~agfKvdW  302 (403)
                      .+|-.+.-...+++|.. -..+|+.| .+++.=|...++=.++.=..+...-      ..|..+...|..+.+   .+.=
T Consensus       249 ~~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~------kkLe~tE~nL~rI~d---iL~E  318 (1486)
T PRK04863        249 IRVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSR------RQLAAEQYRLVEMAR---ELAE  318 (1486)
T ss_pred             HHhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---HHHH
Confidence            34455556666666654 35677777 6666666666666655443333322      222222222222221   1233


Q ss_pred             hhhHHHHHHHHHHhhhhhhhHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 015660          303 LRNILNEISEAIEFSTQHQTIDAAKA-------NCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELE  375 (403)
Q Consensus       303 L~~KLeEV~Eare~~~~~~~~e~~K~-------~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~e  375 (403)
                      |..+|..+....+-+.++..+..+..       .....++.+..++++..+.|...+.++.+..+++.+..+++..|+..
T Consensus       319 Le~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeq  398 (1486)
T PRK04863        319 LNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQ  398 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444433211       11223333444444444445555444555555555555555555544


Q ss_pred             hhhHHHHHHHhhhhh
Q 015660          376 SNRLEQIIQATQSKV  390 (403)
Q Consensus       376 ss~l~~~~~~~kSKV  390 (403)
                      ..++.+.+..++.++
T Consensus       399 Laelqqel~elQ~el  413 (1486)
T PRK04863        399 LADYQQALDVQQTRA  413 (1486)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=83.52  E-value=61  Score=36.41  Aligned_cols=21  Identities=14%  Similarity=0.123  Sum_probs=10.5

Q ss_pred             eEeccEEeeccchHHHHHHHhhcc
Q 015660          219 VSVGKYHVRASISSILQSIISRYG  242 (403)
Q Consensus       219 v~VnGfqVl~Sqv~~v~~IFeKHp  242 (403)
                      ..+||..+...   -+..+|...|
T Consensus       112 ~~~~~~~~~~~---~~~~~l~~~~  132 (1179)
T TIGR02168       112 YFINGQPCRLK---DIQDLFLDTG  132 (1179)
T ss_pred             eeECCCcccHH---HHHHHHhccC
Confidence            45677655222   2455555553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=83.22  E-value=52  Score=37.19  Aligned_cols=48  Identities=15%  Similarity=0.097  Sum_probs=25.4

Q ss_pred             eEeccEEeeccchHHHHHHHhhccccc-----------ccCcccchhHHHHHHHHHHHHHHH
Q 015660          219 VSVGKYHVRASISSILQSIISRYGDIA-----------ANCNLESNSMRAYYLECLCSVVQE  269 (403)
Q Consensus       219 v~VnGfqVl~Sqv~~v~~IFeKHpDIA-----------snf~lKs~~lRs~ym~~Ll~LIet  269 (403)
                      ..+||-.|.   ..-+..+|..+|=..           ..|...+|.-|..|++-+.++...
T Consensus       110 ~~~n~~~~~---~~~~~~~l~~~~~~~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~  168 (1164)
T TIGR02169       110 YYLNGQRVR---LSEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEF  168 (1164)
T ss_pred             EEECCcccc---HHHHHHHHHHcCCCcCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHHH
Confidence            667776663   344566666544111           122333566666677777664433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=83.00  E-value=32  Score=38.39  Aligned_cols=11  Identities=9%  Similarity=0.211  Sum_probs=4.3

Q ss_pred             hhhHHHHHHHH
Q 015660          303 LRNILNEISEA  313 (403)
Q Consensus       303 L~~KLeEV~Ea  313 (403)
                      |+.+++.+...
T Consensus       494 ~~~~~e~l~~~  504 (880)
T PRK02224        494 VEERLERAEDL  504 (880)
T ss_pred             HHHHHHHHHHH
Confidence            33344433333

>PRK01156 chromosome segregation protein; Provisional

Probab=82.23  E-value=27  Score=39.19  Aligned_cols=22  Identities=9%  Similarity=0.099  Sum_probs=9.1

Q ss_pred             HhHHHhcCcchhhhhhHHHHHH
Q 015660          290 LKDVESAQIDVDWLRNILNEIS  311 (403)
Q Consensus       290 L~dL~~agfKvdWL~~KLeEV~  311 (403)
                      +..++...=++.+++.++.++.
T Consensus       321 l~~~e~~~~~~e~~~~~~~e~~  342 (895)
T PRK01156        321 INKYHAIIKKLSVLQKDYNDYI  342 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=81.85  E-value=17  Score=36.80  Aligned_cols=64  Identities=25%  Similarity=0.361  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccc
Q 015660          332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKFSQ  395 (403)
Q Consensus       332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf~~  395 (403)
                      .+....++||+.|-+.+...+++...|+.+.+.+-.-|..+=.+...+.+-+..++-|+++..+
T Consensus       237 e~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~  300 (309)
T PF09728_consen  237 EVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK  300 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999999999999999999999999999999999999887643

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown

Probab=81.36  E-value=24  Score=38.05  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=25.3

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHhcchhhhcc
Q 015660          248 CNLESNSMRAYYLECLCSVVQELQSTSLMQMT  279 (403)
Q Consensus       248 f~lKs~~lRs~ym~~Ll~LIetL~~spl~eLS  279 (403)
                      ..+.|+.+|+.+|+=|+.|--.|.+-- .+++
T Consensus       345 tlLe~~~~R~~fldeL~EL~aFL~qRl-~El~  375 (507)
T PF05600_consen  345 TLLENPETRNQFLDELLELEAFLKQRL-YELS  375 (507)
T ss_pred             hhcCCHhHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            568899999999999999977776644 6665

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=81.14  E-value=30  Score=28.89  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=12.7

Q ss_pred             hHHhHHHHHHHHHHHHHhhhhHHHHH
Q 015660          358 LKESVAKTKARLSDLELESNRLEQII  383 (403)
Q Consensus       358 ~~~rv~e~k~RL~~LE~ess~l~~~~  383 (403)
                      +.+++.+++..|..+|.....++..+
T Consensus        72 l~~e~~~lk~~i~~le~~~~~~e~~l   97 (108)
T PF02403_consen   72 LKAEVKELKEEIKELEEQLKELEEEL   97 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555544433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.01  E-value=65  Score=32.44  Aligned_cols=43  Identities=26%  Similarity=0.351  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhH
Q 015660          337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRL  379 (403)
Q Consensus       337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l  379 (403)
                      ...+|+..-.+|.+.+.++..+..++.+.+++..++..+-..+
T Consensus       221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~  263 (325)
T PF08317_consen  221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA  263 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444434444444444444444444444444444444333

>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR

Probab=80.70  E-value=27  Score=30.24  Aligned_cols=32  Identities=9%  Similarity=0.245  Sum_probs=21.5

Q ss_pred             hhccHHHHHHHHHHHhHHHhcCcchhhhhhHHH
Q 015660          276 MQMTKAKVKEMMAVLKDVESAQIDVDWLRNILN  308 (403)
Q Consensus       276 ~eLS~~dL~ea~~~L~dL~~agfKvdWL~~KLe  308 (403)
                      +-.+.++|..+..+.. |++.||-|+=.+.-|+
T Consensus        35 R~Y~~~~l~~l~~I~~-lr~~G~~L~~I~~~l~   66 (118)
T cd04776          35 RVYSRRDRARLKLILR-GKRLGFSLEEIRELLD   66 (118)
T ss_pred             cccCHHHHHHHHHHHH-HHHCCCCHHHHHHHHH
Confidence            5667777776655544 8889998765554444

Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.

>PRK02224 chromosome segregation protein; Provisional

Probab=80.45  E-value=29  Score=38.72  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=18.7

Q ss_pred             HHHHHHhhcccccccCcccchhHHHHHHHHHHHH
Q 015660          233 ILQSIISRYGDIAANCNLESNSMRAYYLECLCSV  266 (403)
Q Consensus       233 ~v~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~L  266 (403)
                      +.+.||-..|+|..=+ -.+|.=|...+.=|++|
T Consensus       129 f~~~~~i~Qge~~~~l-~~~p~~R~~ii~~l~~l  161 (880)
T PRK02224        129 FVNCAYVRQGEVNKLI-NATPSDRQDMIDDLLQL  161 (880)
T ss_pred             hcceeEeeccChHHHH-cCCHHHHHHHHHHHhCC
Confidence            3444555666664443 34566666666666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 49/386 (12%), Positives = 103/386 (26%), Gaps = 117/386 (30%)

Query: 64  LTPRAVDKVAVGGQKANGQHARS-----ENYPKKKVESENGKSFSRPEHFSREIHPEDHS 118
           L+   +D +     K              +  ++ V+            F  E+   ++ 
Sbjct: 46  LSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQK-----------FVEEVLRINYK 92

Query: 119 LNKEKVRSTQSVPPSENIKM---------NDMSKSPP-----KESVTSLPGA----SPSK 160
                ++ T+   PS   +M         ND            +    L  A     P+K
Sbjct: 93  FLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 161 NGKDNKVQAPIEIHHSTEDGGEDIPSPADGSRNFSFSGID-LASGDSDDEEAQSVISDSV 219
           N         + I       G               SG   +A       + Q  +   +
Sbjct: 152 N---------VLIDG---VLG---------------SGKTWVALDVCLSYKVQCKMDFKI 184

Query: 220 ---SVGKYHVRASISSILQSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQSTSLM 276
              ++   +   ++  +LQ ++ +   I  N    S+      L         +Q+    
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRI-----HSIQAELRR 236

Query: 277 QMTKAKVKEMMAVLKDVESAQIDVDWLRNILNEISEAIEFSTQHQTI----DAAKANCVN 332
            +     +  + VL +V++A+    W          A  F+   + +         + ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKA---W---------NA--FNLSCKILLTTRFKQVTDFLS 282

Query: 333 LLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELES---------------- 376
              +T   +    + + L   EV  L       +    DL  E                 
Sbjct: 283 --AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDLPREVLTTNPRRLSIIAESIR 338

Query: 377 ---NRLEQIIQATQSKVTKFSQKSLA 399
                 +        K+T   + SL 
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLN 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.28
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	91.0
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	90.35
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.77
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.43
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	88.07
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	86.34
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	86.16
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	86.04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	85.84
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	83.62
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	81.89
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	81.83

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.28  E-value=2  Score=43.24  Aligned_cols=53  Identities=19%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 015660          337 TKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSK  389 (403)
Q Consensus       337 ~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSK  389 (403)
                      .+++++++.+++...++++.+++.+++++++++.++..+.+.+.+-+..+..|
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455665666666777777777777777777766665544444333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=91.00  E-value=2.1  Score=42.26  Aligned_cols=71  Identities=23%  Similarity=0.294  Sum_probs=40.7

Q ss_pred             chhhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhh
Q 015660          299 DVDWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNR  378 (403)
Q Consensus       299 KvdWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~  378 (403)
                      ...||+++|+|+....      .+++.+-..|-+.+-++..-||.   +.+|-++.|++...+|+.....|.+++.+..+
T Consensus       398 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (471)
T 3mq9_A          398 VTHLLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDA---EKAQGQKKVEELEGEITTLNHKLQDASAEVER  468 (471)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhH------HHHHHHhhhcchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478888888776655      44445545566666666555554   44555555555555555555555555544443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=90.35  E-value=4.7  Score=34.71  Aligned_cols=19  Identities=32%  Similarity=0.335  Sum_probs=7.2

Q ss_pred             hHHHHHHHHHHHHHhhhhH
Q 015660          361 SVAKTKARLSDLELESNRL  379 (403)
Q Consensus       361 rv~e~k~RL~~LE~ess~l  379 (403)
                      ++..+..++..++.....+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~  102 (284)
T 1c1g_A           84 DVASLNRRIQLFEEELDRA  102 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.77  E-value=5.1  Score=34.92  Aligned_cols=50  Identities=16%  Similarity=0.203  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHH
Q 015660          332 NLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQ  381 (403)
Q Consensus       332 ~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~  381 (403)
                      ..++...+|+...-++|...+.+.......+++.+.++..|+.+..+|+.
T Consensus        82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A           82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444555555555555555544443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.43  E-value=5.5  Score=34.73  Aligned_cols=47  Identities=26%  Similarity=0.242  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhh
Q 015660          331 VNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESN  377 (403)
Q Consensus       331 d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess  377 (403)
                      +..+..++.++.+....+....+++.++++++.++..++++||.+..
T Consensus        88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666677666667777777777777788888888888875543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=88.07  E-value=4.1  Score=45.75  Aligned_cols=57  Identities=18%  Similarity=0.208  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHhH----HHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 015660          335 ESTKKELESQMNELALKEKEVAGLKESV----AKTKARLSDLELESNRLEQIIQATQSKVT  391 (403)
Q Consensus       335 e~~~~ELEe~leeL~~kekev~d~~~rv----~e~k~RL~~LE~ess~l~~~~~~~kSKV~  391 (403)
                      ..+.+|+++.-+++....+|.++..++.    .++.+++..|+.+...|.+.+.++.+.+.
T Consensus       987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A          987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444434333333    34456666788888888887777775443

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=86.34  E-value=4  Score=42.19  Aligned_cols=52  Identities=13%  Similarity=0.073  Sum_probs=17.7

Q ss_pred             eEeccEEeeccchHHH-HHHHhhcccccccCcccchhHHHHHHHHHHHHHHHHh
Q 015660          219 VSVGKYHVRASISSIL-QSIISRYGDIAANCNLESNSMRAYYLECLCSVVQELQ  271 (403)
Q Consensus       219 v~VnGfqVl~Sqv~~v-~~IFeKHpDIAsnf~lKs~~lRs~ym~~Ll~LIetL~  271 (403)
                      |+-+||+++|..++.- ++=.++++--|-+|+.-++.|=++|=. =|.|-.+|.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~c~~~~~~~G~~CPT-tC~l~D~L~   92 (464)
T 1m1j_B           40 ISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDELGVLCPT-GCELQTTLL   92 (464)
T ss_dssp             -----------------------CCCCCSCEECSSTTTCEEEEC-TTHHHHHHH
T ss_pred             cCCCCcCCCCCCCcchhhccCcccCCCCCCccccCCCccCcCCC-ccHHHHHHH
Confidence            7789999999888775 444555555577777766655544422 366666665

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=86.16  E-value=14  Score=34.36  Aligned_cols=43  Identities=16%  Similarity=0.220  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhh
Q 015660          335 ESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESN  377 (403)
Q Consensus       335 e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess  377 (403)
                      .++.+||+..-......++++.+.-+++.+.++.+..++....
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~  135 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML  135 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444344444444444444444444433333333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=86.04  E-value=4.8  Score=37.46  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=19.6

Q ss_pred             HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 015660          347 ELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKV  390 (403)
Q Consensus       347 eL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV  390 (403)
                      ++....+++...+.++....+++.++......+...+..++.++
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l  134 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM  134 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=85.84  E-value=13  Score=46.55  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHhcchhhhccH
Q 015660          256 RAYYLECLCSVVQELQSTSLMQMTK  280 (403)
Q Consensus       256 Rs~ym~~Ll~LIetL~~spl~eLS~  280 (403)
                      =+.||+.|-.-...|.+.- ++|..
T Consensus      1894 P~syLeli~~y~~ll~~K~-~el~~ 1917 (3245)
T 3vkg_A         1894 PRHYLDFINQVVLLINEKR-DQLEE 1917 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            3557777766666665554 44443

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=81.89  E-value=2.9  Score=41.92  Aligned_cols=60  Identities=10%  Similarity=0.181  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhc
Q 015660          334 LESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLEQIIQATQSKVTKF  393 (403)
Q Consensus       334 ~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~~~~~~~kSKV~kf  393 (403)
                      +..++.+|+...+++.+.+.++++++.++.++.++|.+.|..+.+|.-.+.++|.+|+=|
T Consensus         5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~   64 (403)
T 4etp_A            5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY   64 (403)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence            344555666666667777777888888899999999999999999999999999887655

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=81.83  E-value=23  Score=30.67  Aligned_cols=80  Identities=23%  Similarity=0.289  Sum_probs=49.8

Q ss_pred             hhhhhHHHHHHHHHHhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhhhHH
Q 015660          301 DWLRNILNEISEAIEFSTQHQTIDAAKANCVNLLESTKKELESQMNELALKEKEVAGLKESVAKTKARLSDLELESNRLE  380 (403)
Q Consensus       301 dWL~~KLeEV~Eare~~~~~~~~e~~K~~~d~~~e~~~~ELEe~leeL~~kekev~d~~~rv~e~k~RL~~LE~ess~l~  380 (403)
                      .-|+..|....+.-      ...+..-..|-+.+..++.-|++   +-++.++.+++++..|+.+...|.+++.+..+|.
T Consensus        28 ~lLq~qLTqAQe~l------~~~eaQAaTCNqTV~tL~~SL~~---ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr   98 (121)
T 3mq7_A           28 HLLQQELTEAQKGF------QDVEAQAATANHTVMALMASLDA---EKAQGQKKVEELEGEITTLNHKLQDASAEVERLR   98 (121)
T ss_dssp             HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555444333      22233335566677777766665   3444466788888888888888888888888876


Q ss_pred             HHHHHhhhh
Q 015660          381 QIIQATQSK  389 (403)
Q Consensus       381 ~~~~~~kSK  389 (403)
                      .-...+...
T Consensus        99 ~~~~~~~~r  107 (121)
T 3mq7_A           99 RENQVLSVR  107 (121)
T ss_dssp             HHHHHHHHH
T ss_pred             hhchhhhhH
Confidence            655544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1asha_	147	Ascaris hemoglobin, domain 1 {Pig roundworm (Ascar	83.06

>d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Ascaris hemoglobin, domain 1
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=83.06  E-value=2.6  Score=33.92  Aligned_cols=64  Identities=6%  Similarity=0.087  Sum_probs=42.8

Q ss_pred             hHHHHHHHhhcccccccCcc----------cchhHH---HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHhHHHh-c
Q 015660          231 SSILQSIISRYGDIAANCNL----------ESNSMR---AYYLECLCSVVQELQSTSLMQMTKAKVKEMMAVLKDVES-A  296 (403)
Q Consensus       231 v~~v~~IFeKHpDIAsnf~l----------Ks~~lR---s~ym~~Ll~LIetL~~spl~eLS~~dL~ea~~~L~dL~~-a  296 (403)
                      +.+..++|++||++-.-|.-          .|+.|+   ..+|+.|-.+|..|....       .|......|..-=. .
T Consensus        28 ~~~f~~LF~~~P~~k~~F~~f~~~~~~~l~~s~~~~~h~~rv~~~l~~~V~~Ldd~~-------~l~~~l~~Lg~~H~~r  100 (147)
T d1asha_          28 IDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRE-------TFNAYTRELLDRHARD  100 (147)
T ss_dssp             HHHHHHHHHHCGGGGGGSTTTTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHTTTSHH-------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCHHHHHhccccccCCHHHhccCHHHHHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHhccc
Confidence            67899999999999998862          466676   467888888887775433       44444444444432 2


Q ss_pred             Ccchh
Q 015660          297 QIDVD  301 (403)
Q Consensus       297 gfKvd  301 (403)
                      |+.++
T Consensus       101 ~v~v~  105 (147)
T d1asha_         101 HVHMP  105 (147)
T ss_dssp             TCCCC
T ss_pred             ccCCC
Confidence            55444