Citrus Sinensis ID: 015670

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQSSGPSTADDSSAEART
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEEccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEEccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mgaaragggefpervgqpvcqyymrtgtckygasckyhhprqgagsvsnvslnyygyplrpgekeCSYYMKtrqckfgatckfhhpqpagvpaptpspapqvaavptpvpapalypplqspsvpsaqqygvvvarppllhgsyvqgpygpvlvspsmfslqgwspyatslnpisspgtgtqssvgsssiygitqlsasapaytgtyqslpssvgpssssqkehpfperpgqqeCQYYmktgdckfgsscrfhhprelivpkmdvtlspfglplrpgaapcthyvqrgvckfgpackfdhpmgmlsyspsassladmpvapypvgssigtlapssassdlrpelisgsskdsvstrmsssvsissgsvgsilsksgpvphssmqqsgqssgpstaddssaeart
mgaaragggefpervgQPVCQYYMRTGTCKYGASCKYHHprqgagsvsnvSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELIsgsskdsvstRMSSSVSISSGSVGSILSKSGPVPHSsmqqsgqssgpstaddssaeart
MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHpqpagvpaptpspapqvaavptpvpapalyppLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPIsspgtgtqssvgsssIYGITQLSASAPAYTGTYQslpssvgpssssQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGsskdsvstrmsssvsissgsvgsilsksgPVPHssmqqsgqssgpsTADDSSAEART
**************VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH*******************************************QYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYA******************************************************************CQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGML***************************************************************************************************
*******************CQYYMRTGTCKYGASCKYHHPRQG**********YYGYPLRPGEKECSYYMKTRQCKFGATCKF*********************************************************************************************************************************************************YMKTGDCKFGSS***************************GAAPCTHYVQRGVCKFGPACKFDH********************************************************************************************************
**********FPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPI*************SSIYGITQLSASAPAYTGTY**********************PGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTL*************************************GSILSK******************************
***************GQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQ****************************PPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPI******************************************************RPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGM************MPV*************************************************************************************
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ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQSSGPSTADDSSAEART
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
Q6NPN3465 Zinc finger CCCH domain-c yes no 0.928 0.804 0.579 1e-110
Q5NAW2476 Zinc finger CCCH domain-c yes no 0.893 0.756 0.532 1e-106
Q84W91468 Zinc finger CCCH domain-c no no 0.856 0.737 0.553 1e-106
Q9SQU4462 Zinc finger CCCH domain-c no no 0.776 0.677 0.614 9e-95
Q5NAV3466 Zinc finger CCCH domain-c no no 0.868 0.751 0.483 1e-91
Q2R4J4444 Zinc finger CCCH domain-c no no 0.841 0.763 0.433 7e-76
Q9SWF9417 Zinc finger CCCH domain-c N/A no 0.789 0.762 0.459 2e-74
Q2QT65454 Zinc finger CCCH domain-c no no 0.836 0.742 0.425 1e-71
Q5JLB5439 Zinc finger CCCH domain-c no no 0.717 0.658 0.435 2e-66
Q8GXX7397 Zinc finger CCCH domain-c no no 0.689 0.700 0.412 2e-65
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1 Back     alignment and function desciption
 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 237/409 (57%), Positives = 285/409 (69%), Gaps = 35/409 (8%)

Query: 1   MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG--SVSNVSLNYYGYP 58
           +G  R   GEFPER+GQPVCQ++MRTGTCK+GASCKYHHPRQG G  SV+ VSLNY G+P
Sbjct: 84  LGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFP 143

Query: 59  LRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPL 118
           LRPGEKECSY+M+T QCKFG+TC++HHP P GV AP+     Q++A PT      +YP L
Sbjct: 144 LRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPT------MYPSL 197

Query: 119 QSPSVPSAQQYGVVVARPPLLHGSYVQGP--YGPVLVSPSMFSLQGWSPYATSLNPISSP 176
           QS +VPS+QQYGVV+ARP LL GSYVQ P  YG +++ P M    GW+PY  S++ + SP
Sbjct: 198 QSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAMPSP 257

Query: 177 GTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQY 236
             GTQ S+G+SS+YGIT LS SAPA    YQS PSS G    S KE  FP+RP Q ECQY
Sbjct: 258 --GTQPSMGTSSVYGITPLSPSAPA----YQSGPSSTG---VSNKEQTFPQRPEQPECQY 308

Query: 237 YMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACK 296
           +M+TGDCKFG+SCRFHHP E   P+   TLS  GLPLRPGA PCTH+ Q G+CKFGPACK
Sbjct: 309 FMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPLRPGAVPCTHFAQHGICKFGPACK 367

Query: 297 FDH--PMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVST 354
           FDH      LSYSPS SSL DMPVAPYP  SS+GTLAPSS SSD   ELIS SS + ++T
Sbjct: 368 FDHSLGSSSLSYSPSPSSLTDMPVAPYP--SSLGTLAPSS-SSDQCTELISSSSIEPITT 424

Query: 355 RMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQSSGPSTADDSSAEART 403
               S ++++G        S P P  +          +  D +S EA+T
Sbjct: 425 TTGGSETVAAGVSSMTSDVSHPEPAET----------NKGDSASNEAKT 463

Arabidopsis thaliana (taxid: 3702)
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2 Back     alignment and function description
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2 Back     alignment and function description
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2 Back     alignment and function description
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1 Back     alignment and function description
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2 Back     alignment and function description
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1 Back     alignment and function description
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2 Back     alignment and function description
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
224107375456 predicted protein [Populus trichocarpa] 0.933 0.824 0.743 1e-147
224123154477 predicted protein [Populus trichocarpa] 0.937 0.792 0.730 1e-143
225436765475 PREDICTED: zinc finger CCCH domain-conta 0.908 0.770 0.641 1e-135
255551693481 nucleic acid binding protein, putative [ 0.923 0.773 0.761 1e-135
449524278403 PREDICTED: zinc finger CCCH domain-conta 0.918 0.918 0.679 1e-134
449432823481 PREDICTED: zinc finger CCCH domain-conta 0.918 0.769 0.679 1e-134
147853205 518 hypothetical protein VITISV_003243 [Viti 0.933 0.725 0.733 1e-132
225432344478 PREDICTED: zinc finger CCCH domain-conta 0.940 0.792 0.730 1e-132
356563888484 PREDICTED: zinc finger CCCH domain-conta 0.930 0.774 0.668 1e-124
356521891484 PREDICTED: zinc finger CCCH domain-conta 0.930 0.774 0.671 1e-120
>gi|224107375|ref|XP_002314462.1| predicted protein [Populus trichocarpa] gi|222863502|gb|EEF00633.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 287/386 (74%), Positives = 320/386 (82%), Gaps = 10/386 (2%)

Query: 1   MGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLR 60
           +GAARAGGGEFPERVGQP+CQYYMRTGTCK+GASCKY+HP+QG  SV  VSLNYYGYPLR
Sbjct: 80  LGAARAGGGEFPERVGQPLCQYYMRTGTCKFGASCKYNHPKQGGSSVRPVSLNYYGYPLR 139

Query: 61  PGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQS 120
           PGE+EC+YY+KT QCKFGATCKFHHPQPA +  P  S APQVA+VP    A  LYP +QS
Sbjct: 140 PGERECTYYIKTGQCKFGATCKFHHPQPANMQIPAQSLAPQVASVP----AHTLYPTMQS 195

Query: 121 PSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGT 180
           PSVPS+QQYGV+VARPPLL GSYVQGPYGPVL+SPS+     WSPY   ++P++SP    
Sbjct: 196 PSVPSSQQYGVMVARPPLLPGSYVQGPYGPVLLSPSLVPYPSWSPYPAPVSPVASPNA-- 253

Query: 181 QSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKT 240
           Q +VGS S+YGI+ LS SAPAYTG YQS+P++ GPSSSSQKEH FPERPGQ ECQYYMKT
Sbjct: 254 QPAVGSGSVYGISPLSPSAPAYTGAYQSIPTAKGPSSSSQKEHVFPERPGQPECQYYMKT 313

Query: 241 GDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHP 300
           GDCKF SSCR+HHP EL+  K +V LSP GLPLRPGA  CTHY Q G CKFGPACKFDHP
Sbjct: 314 GDCKFESSCRYHHPPELVTSKTNVVLSPMGLPLRPGAPTCTHYTQHGQCKFGPACKFDHP 373

Query: 301 MGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVSTRMSSSV 360
           MG LSYSPSASSLADMPVAPYPVGSSIGTLAPSS+SSD+R    S  SKDS STR+SSS 
Sbjct: 374 MGTLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSDMR----SKPSKDSSSTRLSSST 429

Query: 361 SISSGSVGSILSKSGPVPHSSMQQSG 386
           S  SGSVGS  SKSGP  HSS+Q+SG
Sbjct: 430 STPSGSVGSKYSKSGPASHSSVQKSG 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123154|ref|XP_002330352.1| predicted protein [Populus trichocarpa] gi|222871556|gb|EEF08687.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225436765|ref|XP_002267320.1| PREDICTED: zinc finger CCCH domain-containing protein 32 isoform 1 [Vitis vinifera] gi|296086618|emb|CBI32253.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551693|ref|XP_002516892.1| nucleic acid binding protein, putative [Ricinus communis] gi|223543980|gb|EEF45506.1| nucleic acid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449524278|ref|XP_004169150.1| PREDICTED: zinc finger CCCH domain-containing protein 6-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432823|ref|XP_004134198.1| PREDICTED: zinc finger CCCH domain-containing protein 58-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147853205|emb|CAN78551.1| hypothetical protein VITISV_003243 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432344|ref|XP_002276435.1| PREDICTED: zinc finger CCCH domain-containing protein 32 [Vitis vinifera] gi|297736890|emb|CBI26091.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563888|ref|XP_003550189.1| PREDICTED: zinc finger CCCH domain-containing protein 58-like [Glycine max] Back     alignment and taxonomy information
>gi|356521891|ref|XP_003529584.1| PREDICTED: zinc finger CCCH domain-containing protein 32-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:2182988465 AT5G18550 [Arabidopsis thalian 0.533 0.462 0.573 5.9e-101
TAIR|locus:2081066462 AT3G06410 [Arabidopsis thalian 0.545 0.476 0.551 1.4e-99
TAIR|locus:2043368468 AT2G47850 [Arabidopsis thalian 0.528 0.455 0.521 4.8e-93
TAIR|locus:2075477397 ZFN1 "zinc finger protein 1" [ 0.468 0.476 0.380 9.9e-64
TAIR|locus:2171407375 ZFN3 "zinc finger nuclease 3" 0.228 0.245 0.597 4.8e-60
TAIR|locus:2010562404 AT1G04990 [Arabidopsis thalian 0.186 0.185 0.552 1.1e-49
TAIR|locus:2101170448 AT3G48440 [Arabidopsis thalian 0.228 0.205 0.5 4.5e-44
TAIR|locus:2087775524 HUA1 "ENHANCER OF AG-4 1" [Ara 0.188 0.145 0.518 4.9e-42
TAIR|locus:100623071882 AT1G48195 [Arabidopsis thalian 0.193 0.951 0.512 7e-22
ASPGD|ASPL0000062209254 AN0298 [Emericella nidulans (t 0.163 0.259 0.342 4.6e-06
TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 639 (230.0 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
 Identities = 133/232 (57%), Positives = 153/232 (65%)

Query:   118 LQSPSVPSAQQYGVVVARPPLLHGSYVQGPYG--PVLVSPSMFSLQGWSPYATSLNPIXX 175
             LQS +VPS+QQYGVV+ARP LL GSYVQ PYG   +++ P M    GW+PY  S++ +  
Sbjct:   197 LQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAMPS 256

Query:   176 XXXXXXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQECQ 235
                          +YGIT LS SAPAY                  KE  FP+RP Q ECQ
Sbjct:   257 PGTQPSMGTSS--VYGITPLSPSAPAYQS-------GPSSTGVSNKEQTFPQRPEQPECQ 307

Query:   236 YYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPAC 295
             Y+M+TGDCKFG+SCRFHHP E   P+   TLS  GLPLRPGA PCTH+ Q G+CKFGPAC
Sbjct:   308 YFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPLRPGAVPCTHFAQHGICKFGPAC 366

Query:   296 KFDHPMGM--LSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELIS 345
             KFDH +G   LSYSPS SSL DMPVAPYP  SS+GTLAPSS SSD   ELIS
Sbjct:   367 KFDHSLGSSSLSYSPSPSSLTDMPVAPYP--SSLGTLAPSS-SSDQCTELIS 415
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062209 AN0298 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5NAW2C3H6_ORYSJNo assigned EC number0.53210.89330.7563yesno
Q6NPN3C3H58_ARATHNo assigned EC number0.57940.92800.8043yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.4397.1
hypothetical protein (409 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 1e-08
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 2e-08
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 1e-07
smart0035627 smart00356, ZnF_C3H1, zinc finger 4e-05
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 5e-05
smart0035627 smart00356, ZnF_C3H1, zinc finger 4e-04
smart0035627 smart00356, ZnF_C3H1, zinc finger 6e-04
smart0035627 smart00356, ZnF_C3H1, zinc finger 0.002
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information 
 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 16 GQPVCQYYMRTGTCKYGASCKYHHPR 41
             +C+++ RTGTCKYG  CK+ H +
Sbjct: 2  KTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 99.87
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 99.59
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 99.21
KOG1040325 consensus Polyadenylation factor I complex, subuni 99.0
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 98.88
KOG1040325 consensus Polyadenylation factor I complex, subuni 98.67
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.52
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 98.46
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.43
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.35
KOG2333 614 consensus Uncharacterized conserved protein [Gener 98.16
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 98.15
KOG2333 614 consensus Uncharacterized conserved protein [Gener 98.15
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 98.14
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.09
KOG2494 331 consensus C3H1-type Zn-finger protein [Transcripti 98.08
smart0035627 ZnF_C3H1 zinc finger. 97.78
KOG1763343 consensus Uncharacterized conserved protein, conta 97.76
smart0035627 ZnF_C3H1 zinc finger. 97.75
KOG1763343 consensus Uncharacterized conserved protein, conta 97.47
KOG2185486 consensus Predicted RNA-processing protein, contai 96.97
COG5252299 Uncharacterized conserved protein, contains CCCH-t 96.82
KOG1595 528 consensus CCCH-type Zn-finger protein [General fun 96.69
KOG4791 667 consensus Uncharacterized conserved protein [Funct 96.69
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 96.5
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 96.3
KOG2185 486 consensus Predicted RNA-processing protein, contai 96.24
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 96.03
COG5252299 Uncharacterized conserved protein, contains CCCH-t 95.79
COG5152259 Uncharacterized conserved protein, contains RING a 95.49
COG5152259 Uncharacterized conserved protein, contains RING a 94.24
KOG4791 667 consensus Uncharacterized conserved protein [Funct 93.26
KOG2202260 consensus U2 snRNP splicing factor, small subunit, 93.05
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 92.36
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 92.2
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 92.13
KOG2202260 consensus U2 snRNP splicing factor, small subunit, 90.21
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 87.96
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 86.0
PF1065023 zf-C3H1: Putative zinc-finger domain; InterPro: IP 82.18
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=99.87  E-value=9.9e-22  Score=194.29  Aligned_cols=209  Identities=36%  Similarity=0.708  Sum_probs=136.5

Q ss_pred             CCCCCCCCCCccccccccccCCCCC-CCCCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCC
Q 015670            7 GGGEFPERVGQPVCQYYMRTGTCKY-GASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHH   85 (403)
Q Consensus         7 ~~~~~peR~g~~~CryylrtG~Ck~-G~~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H   85 (403)
                      ..+..|++.++++|++|.++|.|+| |++|||+|..++.+...  .++..+++.+.++++|.+|+++|.|+||.+|+|.|
T Consensus       122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H  199 (332)
T KOG1677|consen  122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIH  199 (332)
T ss_pred             ccccCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecC
Confidence            4468899999999999999999999 99999999998865221  34567788999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCC-CCCCCCCceecCCCcccCCCCC
Q 015670           86 PQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGS-YVQGPYGPVLVSPSMFSLQGWS  164 (403)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~r~~~~pgs-~~~~~y~p~~~~pg~~p~~~w~  164 (403)
                      +...+.....                .. + .+..  .+..++|+....|+-++... .++.+|.+..++.+++|.  |.
T Consensus       200 ~~~~~~~~~~----------------~~-~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~  257 (332)
T KOG1677|consen  200 GEPEDRASNR----------------HP-Y-PVSR--NPQPQSYGLTASRSSLLNQQSKLQQPFAPSGLSESVLPR--SS  257 (332)
T ss_pred             CCcccccccc----------------CC-c-cccc--cccccccchhhcchhhccccccccccccccccccccCcC--Cc
Confidence            9986543211                01 1 1111  23445666444444333222 222223222233343331  10


Q ss_pred             CCCcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccchhhhcCCCCC
Q 015670          165 PYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCK  244 (403)
Q Consensus       165 ~Y~~~~~~~~~p~~~~~~~~~s~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~PeRp~q~~Cryy~KtG~Ck  244 (403)
                                      ++.+...      .+.........          -.....+++.+++++.+++|++ +++|   
T Consensus       258 ----------------~~~~~~~------~~~~~~~~~~~----------~~~~~~~~~~~~~~p~~~~~~~-~~~~---  301 (332)
T KOG1677|consen  258 ----------------QQNLLPQ------GLRSSSSSHPS----------GSQENVNENGFRARPEQPECRS-MKSG---  301 (332)
T ss_pred             ----------------ccccccc------ccccccccccc----------cchhccccccCcCCCCCCccch-hccc---
Confidence                            0000000      00000000000          0113456788999999999999 9999   


Q ss_pred             CCCCCCCCCCCCccCCCCCcccCCCCCCCCCCCccccccccccccCCCCCCCC
Q 015670          245 FGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKF  297 (403)
Q Consensus       245 fG~~CkF~Hp~~~~~~~~~~~ls~~glP~rp~~~~C~~Y~~~G~CkfG~~CkF  297 (403)
                                .++.            +|+|++...|.+|..+|.|+||..|+|
T Consensus       302 ----------~~~l------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (332)
T KOG1677|consen  302 ----------ENRL------------LPLRPGPGACTLFSRYGSCKFGPLCKF  332 (332)
T ss_pred             ----------cccc------------cCCCCCcccccccccccccCCCCcCCC
Confidence                      1111            788999999999999999999999997

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 5e-15
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 7e-15
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 6e-06
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 2e-05
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 1e-07
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 5e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 2e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 2e-06
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 3e-05
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 3e-05
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 8e-05
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 3e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-04
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 7e-04
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
 Score = 68.8 bits (168), Expect = 5e-15
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 20 CQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGA 79
          C+ Y  +G C+YGA C++ H            L       +   + C  +    +C +G+
Sbjct: 15 CRTYSESGRCRYGAKCQFAHGLG--------ELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 80 TCKFHHPQ 87
           C F H  
Sbjct: 67 RCHFIHNP 74
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.48
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.46
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.33
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.33
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.31
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.3
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.18
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.16
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 99.04
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.99
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.95
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 98.9
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.86
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.71
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.67
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.56
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 97.11
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 97.1
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 96.9
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 96.69
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 96.05
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 95.88
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 94.51
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 93.61
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 93.32
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 92.64
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
Probab=99.48  E-value=1e-14  Score=115.15  Aligned_cols=69  Identities=23%  Similarity=0.619  Sum_probs=29.4

Q ss_pred             CCCCccccccccccCCCCCCCCCCCCcCCCCCCCcccccccCCCCCCCCCCcccccccCccCCCCCCCccCCCCCCC
Q 015670           13 ERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA   89 (403)
Q Consensus        13 eR~g~~~CryylrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~r~~e~~C~~flktG~CkfG~~CrF~H~~~~   89 (403)
                      .+.++.+|++|+++|.|++|++|+|+|+..+......        ..+.++.+|++|.++|.|++|++|+|.|....
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------HPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-----------------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc--------cccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            3567899999987799999999999999987542110        11234678998888899999999999998753
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 403
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 2e-04
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 0.001
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 0.004
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 2e-04
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 7e-04
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 0.003
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 0.002
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 0.003
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 234 CQYYMKTGDCKFGSSCRF-HHPREL 257
           C+ Y ++G C++G+ C+F H   EL
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLGEL 36
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.17
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.07
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.07
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.0
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.0
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 97.99
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.3
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.22
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 96.26
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 96.02
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 89.75
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=4.8e-07  Score=62.36  Aligned_cols=34  Identities=29%  Similarity=0.753  Sum_probs=30.3

Q ss_pred             CCCCCccccccccccCCCCCCCCCCCCcCCCCCC
Q 015670           12 PERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG   45 (403)
Q Consensus        12 peR~g~~~CryylrtG~Ck~G~~CkF~H~~~~~~   45 (403)
                      ..+.++.+|++|.++|.|.+|++|.|+|..++.+
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            4578899999999989999999999999988753
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure