Citrus Sinensis ID: 015671

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHTHRIPHIDHMLALDWQKKRKNV
Secondary Structure (PSIPRED)
ccEEccccccccccHHHHHccccEEEccccEEEccHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccEEEEEEEcccccEEEEcHHHHcccccccEEEEcccccccccccccccccccccccccEEEEccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHcccccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHccccccHHHHHHHHHHcEEEEEcccccEEHHHHHHHHHHHHHHcccccccccEEEccHHHHHHHHHccccccEEEEEEEEccccccccccHHHHHHccccEEEEEEccccccccccccccccccccHHHHEEEccccccccccccccHHHHEEEcccccHHHHccccccccHcccEEEccccccccccccccccHHcHHcccEEEccccccHccccccHHcHHHccEEEcccccHHcccccccHHHHHHEcccccccEcccccHHHHHcccEEEccccccHccccccHHHHHcccEEEccccHHHHHccHHHcccHHHHEEEccccccccccHHHHHHHcccEEEccccccHccccHHHccccccccHcccccccccHHHccccccHHHccHHHHHHcc
Coil and Loop (DISEMBL)
mkfhnasgfypeiGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVrqesinpgnrsrlwhhedIYEVLtyntgtekieGICLDMskvkefrlnpstftkmpklrflkfysssfngenkckmsylqdpgfaevkylhwhgyplksfpsnlsaeklvlfevpendiEQLWDCVKHYSKLNQIIHAVCHRLiaktpnptlmprLNKVVILNLrgskslkslpseifNLEFltkldlsgcsklkrlpeissgnisWLFLTGTAIKELPSSIESLLRLEyldlsdckrlkslpsslcklkslgvlnlygcsnlqrlpeclgqlsspitlgltetnieripeSIIQHFVLRYLLLSYSErlqslpsplflargclamqpflgivehthriphidhmLALDWQKKRKNV
Flexible Loop (DISEMBL)
mkfhnasgfypeigiSVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQesinpgnrsrlwhhedIYEVLTYNTGTEKIEGICLDMSKVKEFRlnpstftkmpklrFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKtpnptlmprlNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKrlpeissgniSWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHTHRIPHIDhmlaldwqkkrknv
Low Complexity Region (SEG)
MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCkrlkslpsslcklkslGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVlrylllsyserlqslPSPLFLARGCLAMQPFLGIVEHTHRIPHIDHMLALDWQKKRKNV
Disordered region (IsUnstruct)
******SGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHTHRIPHIDHMLALDW*******
Disordered Region (DISOPRED)
MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMS**QDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHTHRIPHIDHMLALDWQKK****
Disordered Region (DISEMBL)
MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHTHRIPHIDHMLALDWQKKRKNV
Disordered Region (DISPRO)
MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHTHRIPHIDHMLALDWQK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHTHRIPHIDHMLALDWQKKRKNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	yes	no	0.858	0.182	0.382	9e-56
Q40392	1144	TMV resistance protein N	N/A	no	0.786	0.277	0.345	8e-40
O82500	1095	Putative disease resistan	no	no	0.781	0.287	0.32	3e-34
Q9FL92	1372	Probable WRKY transcripti	no	no	0.813	0.239	0.300	8e-33
Q9FH83	1288	Probable WRKY transcripti	no	no	0.779	0.243	0.319	2e-32
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.838	0.259	0.312	7e-26
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.751	0.187	0.273	2e-21
P0CB16	1201	Putative disease resistan	no	no	0.439	0.147	0.336	9e-13
Q9RBS2	1024	Protein PopC OS=Ralstonia	no	no	0.645	0.253	0.256	3e-09
A6H6A4	596	Leucine-rich repeat and I	yes	no	0.635	0.429	0.257	7e-09

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  218 bits (554), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 146/382 (38%), Positives = 211/382 (55%), Gaps = 36/382 (9%)

Query: 5    NASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESIN-PGNRSRLWHHE 63
            +  GF   +G   LVDKSL+ +  +N + M   +Q  GREIVRQES + PG+RSRLW+ +
Sbjct: 1079 DGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSFIQATGREIVRQESADRPGDRSRLWNAD 1138

Query: 64   DIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMS 123
             I  V   +TGT  IEGI LDM  +K F  NP+ F KM  LR LK Y S    E K  +S
Sbjct: 1139 YIRHVFINDTGTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCS--KAEEKHGVS 1195

Query: 124  YLQDPGF--AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVK-HYSKLNQ 180
            + Q   +  ++++ LHW  YPL S P + + E LV   +P +  ++LW   K  +   N 
Sbjct: 1196 FPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNS 1255

Query: 181  IIHAVCHRLIAKTPNPTLMPRLN---------------------------KVVILNLRGS 213
             +  +    ++ +   T +PRL+                           K+V LNL+G 
Sbjct: 1256 SLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGC 1315

Query: 214  KSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLR 273
              L+++PS + +LE L  L+LSGCSKL   PEIS  N+  L++ GT I+E+PSSI++L+ 
Sbjct: 1316 SKLENIPS-MVDLESLEVLNLSGCSKLGNFPEISP-NVKELYMGGTMIQEIPSSIKNLVL 1373

Query: 274  LEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333
            LE LDL + + LK+LP+S+ KLK L  LNL GC +L+R P+   ++     L L+ T+I+
Sbjct: 1374 LEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIK 1433

Query: 334  RIPESIIQHFVLRYLLLSYSER 355
             +P SI     L  LL   S R
Sbjct: 1434 ELPSSISYLTALDELLFVDSRR 1455

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  164 bits (416), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 183/356 (51%), Gaps = 39/356 (10%)

Query: 11  PEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLT 70
            E G+ +L+DKSL+ +  YN+++MHDL+Q++G+ IV  +  +PG RSRLW  +++ EV++
Sbjct: 464 AEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQK-DPGERSRLWLAKEVEEVMS 522

Query: 71  YNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF 130
            NTGT  +E I +  S     R +      M +LR      SS        + YL +   
Sbjct: 523 NNTGTMAMEAIWVS-SYSSTLRFSNQAVKNMKRLRVFNMGRSS----THYAIDYLPN--- 574

Query: 131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLI 190
             ++      YP +SFPS    + LV  ++  N +  LW   KH   L +I  +   RL 
Sbjct: 575 -NLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRL- 632

Query: 191 AKTPNPTLMPRL---------------------NKVVILNLRGSKSLKSLPSEIFNLEFL 229
            +TP+ T MP L                     +KV+ L L   KSLK  P    N+E L
Sbjct: 633 TRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFP--CVNVESL 690

Query: 230 TKLDLSGCSKLKRLPEISSGNIS---WLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRL 285
             L L  C  L++LPEI  G +     + + G+ I+ELPSSI +    +  L L + K L
Sbjct: 691 EYLGLRSCDSLEKLPEIY-GRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNL 749

Query: 286 KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQ 341
            +LPSS+C+LKSL  L++ GCS L+ LPE +G L +      ++T I R P SII+
Sbjct: 750 VALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIR 805

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  146 bits (369), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 189/375 (50%), Gaps = 60/375 (16%)

Query: 10  YPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESI-NPGNRSRLWHHEDIYEV 68
           Y   G+ VL DKSLI      +I MH LL++LG+E+VR++SI  PG R  L + ++   V
Sbjct: 460 YVSFGLQVLADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGV 519

Query: 69  LTYNTGTEKIEGICLDMSKVK-EFRLNPSTFTKMPKLRFLKFY-SSSFNGENKCKMSYLQ 126
           L+ NTGT  + GI LDM ++K E  ++  TF +M  L +LKFY SS  + + K K+  L 
Sbjct: 520 LSNNTGTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQ-LP 578

Query: 127 DPGFA---EVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVK---------- 173
           + G +   +++ LHW  YPL+ FPS+   E LV   +  + +++LW  V+          
Sbjct: 579 EEGLSYLPQLRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNL 638

Query: 174 -------------HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP 220
                          +KLN++    C  L+     P+ +  L  +++L +   K L+ +P
Sbjct: 639 NSSRNLEILPNLMEATKLNRLDLGWCESLVEL---PSSIKNLQHLILLEMSCCKKLEIIP 695

Query: 221 SEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLR------- 273
           + I NL  L  L    C++L+  PEIS+ NI  L L GTAI E+P S++   +       
Sbjct: 696 TNI-NLPSLEVLHFRYCTRLQTFPEIST-NIRLLNLIGTAITEVPPSVKYWSKIDEICME 753

Query: 274 -------------LEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
                        LE L L + K L+++P  L  L  L ++++  C N+  LP+  G +S
Sbjct: 754 RAKVKRLVHVPYVLEKLCLRENKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVS 813

Query: 321 SPITLGLTETNIERI 335
           +     LT  N E +
Sbjct: 814 A-----LTAVNCESL 823

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  141 bits (356), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 186/399 (46%), Gaps = 71/399 (17%)

Query: 1   MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLW 60
           M+     GF+P +GI VLV+KSL+ + S N++RMH+L+Q++GR+I+ +E+     RSRLW
Sbjct: 403 MQLLEGCGFFPHVGIDVLVEKSLVTI-SENRVRMHNLIQDVGRQIINRETRQTKRRSRLW 461

Query: 61  -------------HHEDIYEVLTYNTGT--EKIEGICLDMSKVKEFRLNPSTFTKMPKLR 105
                         +E+  +  T+      E+IEG+ LD S +  F +    F  M  LR
Sbjct: 462 EPCSIKYLLEDKEQNENEEQKTTFERAQVPEEIEGMFLDTSNLS-FDIKHVAFDNMLNLR 520

Query: 106 FLKFYSSS---FNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPE 162
             K YSS+    +  N  K S    P    ++ LHW  YPL+  P N     LV   +P 
Sbjct: 521 LFKIYSSNPEVHHVNNFLKGSLSSLPNV--LRLLHWENYPLQFLPQNFDPIHLVEINMPY 578

Query: 163 NDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSE 222
           + +++LW   K    L  I   +CH       +  L  +   + +++L+G   L+S P+ 
Sbjct: 579 SQLKKLWGGTKDLEMLKTI--RLCHSQQLVDIDDLL--KAQNLEVVDLQGCTRLQSFPA- 633

Query: 223 IFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSI-------------- 268
              L  L  ++LSGC+++K  PEI   NI  L L GT I ELP SI              
Sbjct: 634 TGQLLHLRVVNLSGCTEIKSFPEIPP-NIETLNLQGTGIIELPLSIVKPNYRELLNLLAE 692

Query: 269 ------------------ESLL----------RLEYLDLSDCKRLKSLPSSLCKLKSLGV 300
                              SL+          +L  L+L+DC RL+SLP ++  L+ L  
Sbjct: 693 IPGLSGVSNLEQSDLKPLTSLMKISTSYQNPGKLSCLELNDCSRLRSLP-NMVNLELLKA 751

Query: 301 LNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESI 339
           L+L GCS L+ +      L     +G     + ++P+S+
Sbjct: 752 LDLSGCSELETIQGFPRNLKELYLVGTAVRQVPQLPQSL 790

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 180/388 (46%), Gaps = 74/388 (19%)

Query: 6   ASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDI 65
             GF+P + I VLVDK L+ + S N++ +H L Q++GREI+  E++    R RLW    I
Sbjct: 415 GCGFFPHVEIDVLVDKCLVTI-SENRVWLHKLTQDIGREIINGETVQIERRRRLWEPWSI 473

Query: 66  YEVLTYN---------------TGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFY 110
             +L YN                G+E+IEG+ LD S ++ F L PS F  M  LR LK Y
Sbjct: 474 KYLLEYNEHKANGEPKTTFKRAQGSEEIEGLFLDTSNLR-FDLQPSAFKNMLNLRLLKIY 532

Query: 111 SSSFNGENKCKMSYLQDPGFA---EVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQ 167
            S  N E    +++      +   E++ LHW  YPLKS P N     LV   +P + +++
Sbjct: 533 CS--NPEVHPVINFPTGSLHSLPNELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQK 590

Query: 168 LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLE 227
           LW   K+   L  I     H L+    +   + +   + +++L+G   L++ P+    L 
Sbjct: 591 LWGGTKNLEMLRTIRLCHSHHLV----DIDDLLKAENLEVIDLQGCTRLQNFPAA-GRLL 645

Query: 228 FLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELP---------------------- 265
            L  ++LSGC K+K + EI   NI  L L GT I  LP                      
Sbjct: 646 RLRVVNLSGCIKIKSVLEIPP-NIEKLHLQGTGILALPVSTVKPNHRELVNFLTEIPGLS 704

Query: 266 -------------SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL--- 309
                        SS + L +L  L+L DC  L+SLP ++  L  L VL+L GCS+L   
Sbjct: 705 EELERLTSLLESNSSCQDLGKLICLELKDCSCLQSLP-NMANL-DLNVLDLSGCSSLNSI 762

Query: 310 QRLPECLGQLSSPITLGLTETNIERIPE 337
           Q  P  L QL       L  T I  +P+
Sbjct: 763 QGFPRFLKQLY------LGGTAIREVPQ 784

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  118 bits (296), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 191/377 (50%), Gaps = 39/377 (10%)

Query: 13  IGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESI-NPGNRSRLWHHEDIYEVLTY 71
           +G ++L +KSLI +     I MH+LL++LGREI R +S  NPG R  L + EDI+EV+T 
Sbjct: 453 VGFTMLTEKSLIRITPDGYIEMHNLLEKLGREIDRAKSKGNPGKRRFLTNFEDIHEVVTE 512

Query: 72  NTGTEKIEGICLDMSKVKEFR---LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDP 128
            TGTE + GI L   +    R   ++  +F  M  L++L+     + G+    + YL   
Sbjct: 513 KTGTETLLGIRLPFEEYFSTRPLLIDKESFKGMRNLQYLEI---GYYGDLPQSLVYLP-- 567

Query: 129 GFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHR 188
              +++ L W   PLKS PS   AE LV   +  + +E+LW+       L ++     + 
Sbjct: 568 --LKLRLLDWDDCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNN 625

Query: 189 LIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP-EIS 247
           L  + P+ +L   L +   L+L G KSL +LPS I N   L  LD+S C KL+  P +++
Sbjct: 626 L-KEIPDLSLAINLEE---LDLVGCKSLVTLPSSIQNATKLIYLDMSDCKKLESFPTDLN 681

Query: 248 SGNISWLFLTGT-------AIKELPSSIESLLRLEYLDLSDCKRLKSLPSSL-------- 292
             ++ +L LTG        AIK   S ++       + + DC   K+LP+ L        
Sbjct: 682 LESLEYLNLTGCPNLRNFPAIKMGCSDVDFPEGRNEIVVEDCFWNKNLPAGLDYLDCLTR 741

Query: 293 ---CKLK--SLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET-NIERIPESIIQHFVLR 346
              C+ +   L  LN+ G  + ++L E +  L S   + L+E+ N+  IP+ + +   L 
Sbjct: 742 CMPCEFRPEQLAFLNVRGYKH-EKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATKLE 799

Query: 347 YLLLSYSERLQSLPSPL 363
            L+L+  + L +LPS +
Sbjct: 800 SLILNNCKSLVTLPSTI 816

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 162/347 (46%), Gaps = 44/347 (12%)

Query: 1   MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLW 60
           M+    S ++P + I VLVDK ++ + S N ++M++L+Q+  +EI   E       +R+W
Sbjct: 431 MQLLEESHYFPRLAIDVLVDKCVLTI-SENTVQMNNLIQDTCQEIFNGEI---ETCTRMW 486

Query: 61  HHEDIYEVLTYN-------------TG--TEKIEGICLDMSKVKEFRLNPSTFTKMPKLR 105
               I  +L Y+             +G   E IE I LD S VK F +    F  M  L+
Sbjct: 487 EPSRIRYLLEYDELEGSGETKAMPKSGLVAEHIESIFLDTSNVK-FDVKHDAFKNMFNLK 545

Query: 106 FLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDI 165
           FLK Y+S     +        D    E++ LHW  YPL+S P +     LV   +P + +
Sbjct: 546 FLKIYNSCSKYISGLNFPKGLDSLPYELRLLHWENYPLQSLPQDFDFGHLVKLSMPYSQL 605

Query: 166 EQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFN 225
            +L   VK    L ++I +   +L+       ++     + +++L+G   L+  P +   
Sbjct: 606 HKLGTRVKDLVMLKRLILSHSLQLV----ECDILIYAQNIELIDLQGCTGLQRFP-DTSQ 660

Query: 226 LEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELP------------------SS 267
           L+ L  ++LSGC+++K    +   NI  L L GT I+E+P                  + 
Sbjct: 661 LQNLRVVNLSGCTEIKCFSGVPP-NIEELHLQGTRIREIPIFNATHPPKVKLDRKKLWNL 719

Query: 268 IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE 314
           +E+   +E++DL     L ++ S+   +  L  LN+  CSNL+ LP+
Sbjct: 720 LENFSDVEHIDLECVTNLATVTSNNHVMGKLVCLNMKYCSNLRGLPD 766

Arabidopsis thaliana (taxid: 3702)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 75.1 bits (183), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 100/193 (51%), Gaps = 16/193 (8%)

Query: 190 IAKTPNPTLMPRLNKVVILN---LRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI 246
           ++KT  P L   +  VV LN   LR    ++ LPS I  L  L   D+SGC KLK +   
Sbjct: 686 MSKTSLPELADTIADVVNLNKLLLRNCSLIEELPS-IEKLTHLEVFDVSGCIKLKNING- 743

Query: 247 SSGNISWLF---LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNL 303
           S G +S+L    L+ T + ELP  I  L  L+ L +  C +LK+LP+ L KL +L + ++
Sbjct: 744 SFGEMSYLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLPN-LEKLTNLEIFDV 802

Query: 304 YGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS-- 361
            GC+ L+ +      LS    + L+ETN+  +P  I +   L+ L+L    +L++LP+  
Sbjct: 803 SGCTELETIEGSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALPNLE 862

Query: 362 -----PLFLARGC 369
                 +F   GC
Sbjct: 863 KLTHLVIFDVSGC 875

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 135/312 (43%), Gaps = 52/312 (16%)

Query: 82  CLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGY 141
            L +   K F+  P    ++P L+ LK   +          S     G + ++ L     
Sbjct: 251 TLSLKGAKNFKALPDAVWRLPALQELKLSETGLK-------SLPPVGGGSALQRLTIEDS 303

Query: 142 PLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCH----RLIAKTPNPT 197
           PL+  P+  +            D++QL       +KL ++   +      + ++   NP 
Sbjct: 304 PLEQLPAGFA------------DLDQLASLSLSNTKLEKLSSGIGQLPALKSLSLQDNPK 351

Query: 198 L--MPR-LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI--SSGNIS 252
           L  +P+ L +V  L L G + + +LPS    +  L KL +   S L +LP    + GN++
Sbjct: 352 LERLPKSLGQVEELTLIGGR-IHALPS-ASGMSSLQKLTVDNSS-LAKLPADFGALGNLA 408

Query: 253 WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLY-------- 304
            + L+ T +++LP+SI +L  L+ L L D  +L SLP+S  +L  L  L L         
Sbjct: 409 HVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLNGNRIHELP 468

Query: 305 ---GCSNLQR----------LPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLS 351
              G S+LQ           LP   G L +   L L+ T +  +P +      L+ L L 
Sbjct: 469 SMGGASSLQTLTVDDTALAGLPADFGALRNLAHLSLSNTQLRELPANTGNLHALKTLSLQ 528

Query: 352 YSERLQSLPSPL 363
            +++L +LPS L
Sbjct: 529 GNQQLATLPSSL 540

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|A6H6A4|LRIQ4_MOUSE Leucine-rich repeat and IQ domain-containing protein 4 OS=Mus musculus GN=Lrriq4 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 35/291 (12%)

Query: 75  TEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVK 134
           TE   GIC  +  ++ F L+ +    +P+             + K +  YL+   F    
Sbjct: 167 TEIPTGICKSLHHLELFGLSENFLESLPE---------EIVNQTKLREIYLKQNHF---- 213

Query: 135 YLHWHGYPLKSFPSNLSA-EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKT 193
                    + FP +L     L + ++ EN ++ +   + H  +L +   A  H +    
Sbjct: 214 ---------EVFPCDLCVLYNLEVIDLDENKLKSIPGDIGHLVRLQKFYVASNHLMSL-- 262

Query: 194 PNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISW 253
             P  + + +K+ +L+L  + S+ SLPS +  L  LT++ LSG ++L+++P +    +S 
Sbjct: 263 --PESLSQCSKLSVLDLTHN-SIHSLPSSLELLTELTEVGLSG-NRLEKVPRLLCSWVSL 318

Query: 254 --LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR 311
             L+L  T++  L  S + L+ L +LDLS    ++  P  +C LK+L +L L   + +++
Sbjct: 319 HLLYLRNTSLHGLRDSFKRLINLRFLDLSQ-NHIEHFPVQICALKNLEILALDD-NKVRQ 376

Query: 312 LPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSE--RLQSLP 360
           LP  +  LS+   LGLT  ++   PE I     L  L +   +  +L SLP
Sbjct: 377 LPPSISLLSNLKILGLTGNDLLSFPEEIFSLISLEKLYIGQDQGSKLSSLP 427

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
359486073	1296	PREDICTED: TMV resistance protein N-like	0.885	0.275	0.43	3e-66
359486075	1291	PREDICTED: TMV resistance protein N-like	0.893	0.278	0.419	5e-65
359486071	1261	PREDICTED: TMV resistance protein N-like	0.833	0.266	0.427	2e-64
255563202	1158	leucine-rich repeat containing protein,	0.823	0.286	0.419	8e-64
359496026	1250	PREDICTED: TMV resistance protein N-like	0.836	0.269	0.425	1e-63
225448053	1468	PREDICTED: TMV resistance protein N-like	0.893	0.245	0.421	4e-63
147770134	1414	hypothetical protein VITISV_040107 [Viti	0.893	0.254	0.411	2e-62
296089535	688	unnamed protein product [Vitis vinifera]	0.823	0.482	0.424	4e-62
147858727	1177	hypothetical protein VITISV_025072 [Viti	0.808	0.276	0.439	6e-62
225460354	1174	PREDICTED: TMV resistance protein N-like	0.794	0.272	0.425	1e-61

>gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 172/400 (43%), Positives = 232/400 (58%), Gaps = 43/400 (10%)

Query: 1   MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESI-NPGNRSRL 59
           +K   +  F+PEIGI  L+DKSL+ + SYNK+ MHDL+Q++G EIVRQESI +PG RSRL
Sbjct: 462 IKLLKSCDFFPEIGIRNLIDKSLVTI-SYNKLCMHDLIQKMGWEIVRQESIKDPGKRSRL 520

Query: 60  WHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGEN- 118
           W ++D+ ++LT NTGTE +EG+ L++S +KE   + + FTKM KLR L+FY +   G + 
Sbjct: 521 WVNDDVIDMLTTNTGTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSW 580

Query: 119 -------------KCKMSYLQDPGF--AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPEN 163
                        +CK     D  F    ++ L+W GYPLKS PSN   EKL+  ++  +
Sbjct: 581 IWRRNDRYKSPYTECKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFS 640

Query: 164 DIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI---------------- 207
            +EQLW+  K + KL  I  +    LI KTP+ +  P+L ++++                
Sbjct: 641 QLEQLWEGNKSFQKLKFIELSHSQHLI-KTPDFSGAPKLRRIILEGCTSLVKVHPSIGAL 699

Query: 208 -----LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTA 260
                LNL G K+LKS  S I +LE L  L LSGCSKLK+ PE+     N S L L GTA
Sbjct: 700 KKLIFLNLEGCKNLKSFLSSI-HLESLQILTLSGCSKLKKFPEVQGPMDNFSELSLKGTA 758

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           IK LP SIE L  L  L+L +CK L+SLPS + KLKSL  L L  CS L++LPE    + 
Sbjct: 759 IKGLPLSIEYLNGLALLNLEECKSLESLPSCIFKLKSLKTLILSNCSRLKKLPEIGENME 818

Query: 321 SPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLP 360
           S   L L +T +  +P SI     L  L L   +RL SLP
Sbjct: 819 SLKELFLDDTGLRELPSSIEHLNGLVLLKLKNCKRLASLP 858

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 169/403 (41%), Positives = 231/403 (57%), Gaps = 43/403 (10%)

Query: 1   MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESI-NPGNRSRL 59
           +K   +  F+PEIGI  L+DKSL+ + SYNK+ MHDL+QE+G EIVRQES+ +PG RSRL
Sbjct: 457 IKLLKSCDFFPEIGIRNLIDKSLVTI-SYNKLCMHDLIQEMGWEIVRQESMKDPGKRSRL 515

Query: 60  WHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGEN- 118
           W ++D+ ++LT NTGTE +EG+ L++S +KE   + + FTKM KLR L+FY +   G + 
Sbjct: 516 WVNDDVIDMLTTNTGTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSW 575

Query: 119 -------------KCKMSYLQDPGF--AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPEN 163
                        +CK     D  F    ++ L+W GYPLKS PSN   EKL+  ++  +
Sbjct: 576 IWRRNDRYKSPYTECKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFS 635

Query: 164 DIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI---------------- 207
            +EQLW+  K + KL  I  +    LI K P+ +  P+L ++++                
Sbjct: 636 QLEQLWEGNKSFQKLKFIELSHSQHLI-KAPDFSGAPKLRRIILEGCTSLVKVHPSIGAL 694

Query: 208 -----LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLTGTA 260
                LNL G K+LKS  S I +LE L  L LSGCSKLK+LPE+     N+S L L GTA
Sbjct: 695 KKLIFLNLEGCKNLKSFLSSI-HLESLQILTLSGCSKLKKLPEVQGAMDNLSELSLKGTA 753

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           IK LP SIE L  L   +L +CK L+SLP  + KLKSL  L L  C  L++LPE    + 
Sbjct: 754 IKGLPLSIEYLNGLALFNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENME 813

Query: 321 SPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPL 363
           S   L L +T +  +P SI     L  L L   +RL SLP  +
Sbjct: 814 SLKELFLDDTGLRELPSSIEHLNGLVLLKLKNCKRLASLPESI 856

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 162/379 (42%), Positives = 221/379 (58%), Gaps = 43/379 (11%)

Query: 1   MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESI-NPGNRSRL 59
           +K   +  F+PEI I  L+DKSL+ + SYNK+ MHDL+QE+G EIVRQESI +PG RSRL
Sbjct: 457 IKLLKSCDFFPEIEIRNLIDKSLVTI-SYNKLCMHDLIQEMGWEIVRQESIKDPGKRSRL 515

Query: 60  WHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGEN- 118
           W ++D+ ++LT NTGTE +EG+ L++S +KE   + + FTKM KLR L+FY +   G + 
Sbjct: 516 WVNDDVIDMLTTNTGTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSW 575

Query: 119 -------------KCKMSYLQDPGF--AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPEN 163
                        +CK     D  F    ++ LHW GYPLKS PSN   EKL+  ++  +
Sbjct: 576 IGRHNDRYKSPYTECKFHLSGDFKFLSNHLRSLHWDGYPLKSLPSNFHPEKLLELKMCFS 635

Query: 164 DIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI---------------- 207
            +EQLW+  K + KL  I  +    LI KTP+ +  P+L ++++                
Sbjct: 636 QLEQLWEGNKSFQKLKFIELSHSQHLI-KTPDFSGAPKLRRIILEGCTSLVKVHPSIGAL 694

Query: 208 -----LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLTGTA 260
                LNL G K+LKS  S I +LE L  + LSGCSKLK+ PE+     N+  L L GTA
Sbjct: 695 KKLIFLNLEGCKNLKSFSSSI-HLESLQTITLSGCSKLKKFPEVQGAMDNLPELSLKGTA 753

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           IK LP SIE L  L  L+L +CK L+SLP  + KLKSL  L L  CS L++LPE    + 
Sbjct: 754 IKGLPLSIEYLNGLSLLNLEECKSLESLPGCIFKLKSLKTLILSNCSRLKKLPEIQENME 813

Query: 321 SPITLGLTETNIERIPESI 339
           S   L L +T +  +P SI
Sbjct: 814 SLKKLFLDDTGLRELPSSI 832

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  250 bits (639), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 151/360 (41%), Positives = 215/360 (59%), Gaps = 28/360 (7%)

Query: 5   NASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHED 64
           +  GF  +IGIS LVDKSL+ + S NK++MHDLLQE+GREIVRQES  P  RSRLW+ +D
Sbjct: 497 DGCGFSADIGISTLVDKSLLTI-SKNKLKMHDLLQEMGREIVRQESKRPSERSRLWNPDD 555

Query: 65  IYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNG--ENKCKM 122
           IY+VL  NTGTE I GI L MS+ ++  LN + FT++  L+FL    S+  G  E +CK+
Sbjct: 556 IYKVLEENTGTEAIVGILLGMSEARKLELNRNAFTRISNLKFLILRMSNNCGGFEEECKV 615

Query: 123 SYLQ--DPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQ 180
            + +  +    +++YL+WHGYPLK  P+N     L+    P + +E LW+  K       
Sbjct: 616 QFPEGLESLPQQLRYLYWHGYPLKFLPANFHPTNLIELNFPYSRLEGLWEGDKV------ 669

Query: 181 IIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKL 240
                          P+ + +L K+  ++LR SK+++S P+ I +L+ L  LDLSGCS L
Sbjct: 670 ---------------PSSIGQLTKLTFMSLRCSKNIRSFPTTI-DLQSLETLDLSGCSNL 713

Query: 241 KRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGV 300
           K  PE+S  NI +L+L  TAI+E+P SIE L +L  L++ +C  L+ +PS++ KLKSLGV
Sbjct: 714 KIFPEVSR-NIRYLYLNETAIQEVPLSIEHLSKLVVLNMKNCNELECIPSTIFKLKSLGV 772

Query: 301 LNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLP 360
           L L GC  L+  PE L   +    L L ET +  +P++      L  L  S   +L  LP
Sbjct: 773 LILSGCKKLESFPEILETTNHLQHLSLDETAMVNLPDTFCNLKALNMLNFSDCSKLGKLP 832

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 162/381 (42%), Positives = 219/381 (57%), Gaps = 44/381 (11%)

Query: 1   MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQES---------I 51
           +K  ++ GFYP IGI VL+DKSLI V  +NK+ MHDLLQE+G +IVR+ S         +
Sbjct: 458 IKILDSCGFYPSIGIRVLIDKSLITV-VHNKLWMHDLLQEMGWDIVRKTSHKNPSKRRRL 516

Query: 52  NPGNRSRLWHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYS 111
           +PG  SRLW  ED+Y+VLT  TGTE IEGI L++  +KE       F +M KLR LK Y+
Sbjct: 517 DPGKHSRLWLQEDVYDVLTEKTGTENIEGIFLNLYGLKEIHYTTEAFAEMKKLRLLKVYN 576

Query: 112 SSFNGE-------NKCKMSYLQDPGFA--EVKYLHWHGYPLKSFPSNLSAEKLVLFEVPE 162
           S  +G+          K  + QD  F   +++YL+WH YPLKS PSN   + LV   +  
Sbjct: 577 SHNSGDFEYASRNENYKRPFSQDFEFPSNKLRYLYWHRYPLKSLPSNFHPKNLVELNLCC 636

Query: 163 NDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRL-------------------- 202
             +E+LW  VKH  KL + I     + + +TP+ + +P L                    
Sbjct: 637 CYVEELWKGVKHMEKL-ECIDLSHSQYLVRTPDFSGIPNLERLIFEGCTDLREVHQSLGV 695

Query: 203 -NKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLTGT 259
            +K++ LNL+  K+L+  PS I  LE L  L LSGCSKL   PEI  +   +  LFL GT
Sbjct: 696 LSKLIFLNLKDCKNLQCFPSSI-ELESLKVLILSGCSKLDNFPEILENMEGLRELFLDGT 754

Query: 260 AIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL 319
           AIKELP S+E L  L  L+L +C+RL +LPSS+C LKSL  L L GCS L++LPE LG L
Sbjct: 755 AIKELPLSVEHLNGLVLLNLRNCERLITLPSSICNLKSLSTLTLSGCSQLEKLPENLGNL 814

Query: 320 SSPITLGLTETNIERIPESII 340
              + L    + + + P SI+
Sbjct: 815 ECLVELVADGSAVIQPPSSIV 835

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448053|ref|XP_002273151.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  248 bits (633), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 171/406 (42%), Positives = 226/406 (55%), Gaps = 46/406 (11%)

Query: 2   KFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESI-NPGNRSRLW 60
           K   +  F+PEIGI  L+DKSL+ + SYNK+ MHDL+QE+G EIVRQESI +PG RSRLW
Sbjct: 458 KIQKSCDFFPEIGIRNLIDKSLVTI-SYNKLCMHDLIQEMGWEIVRQESIKDPGKRSRLW 516

Query: 61  HHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKF----------- 109
             ED+  +LT N GTE +EGI LD+S +KE   +   FTKM +LR L+F           
Sbjct: 517 VTEDVIHMLTTNIGTEAVEGIVLDLSALKELHFSVDVFTKMNRLRVLRFCNAQICEIWDY 576

Query: 110 ------YSSSFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVP 161
                 Y S  N   KCK+    D  F    +K LHW GYP KS PS    EKLV  ++ 
Sbjct: 577 AWKRGNYDSCKNQYPKCKLHLYGDFKFLSNNLKSLHWDGYPSKSLPSTFHPEKLVELKMS 636

Query: 162 ENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI-------------- 207
            + +EQLW+  K + KL  I  +    LI KTP+ +  P L ++++              
Sbjct: 637 FSRLEQLWEGNKSFQKLKFIKLSHSQHLI-KTPDFSGAPNLRRIILVGCTSLVKVHPSIG 695

Query: 208 -------LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLTG 258
                  L+L G K+LKS  S I ++E L  L+L+GCSKLK+ PE+     N+  L L G
Sbjct: 696 ALKKLIFLDLEGCKNLKSFSSSI-HMESLQILNLAGCSKLKKFPEVQGAMYNLPELSLKG 754

Query: 259 TAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQ 318
           TAIK LP SIE L  L  L+L +CK L+SLPS + KLKSL  L L  C  L++LPE    
Sbjct: 755 TAIKGLPLSIEYLNGLALLNLGECKSLESLPSCIFKLKSLKTLILSNCLRLKKLPEIREN 814

Query: 319 LSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLF 364
           + S   L L +T +  +P SI     L  L +   ++L SLP  +F
Sbjct: 815 MESLKELFLDDTGLRELPSSIEHLNELVLLQMKNCKKLASLPESIF 860

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770134|emb|CAN76615.1| hypothetical protein VITISV_040107 [Vitis vinifera]

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 166/403 (41%), Positives = 226/403 (56%), Gaps = 43/403 (10%)

Query: 1   MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESI-NPGNRSRL 59
           +K   +  F+PEIGI  L+DKSL+ + SYNK+ MHDL+QE+G EIVRQES  +PG  SRL
Sbjct: 430 IKLLKSCDFFPEIGIRNLIDKSLVTI-SYNKLCMHDLIQEMGWEIVRQESXKDPGKXSRL 488

Query: 60  WHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGEN- 118
           W ++D+ ++LT NTGTE +EG+ L++S +KE   + + FTKM KLR  +FY +   G + 
Sbjct: 489 WVNDDVIDMLTTNTGTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVXRFYDAQIWGSSW 548

Query: 119 -------------KCKMSYLQDPGF--AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPEN 163
                        +CK     D  F    ++ L+W GYPLKS PSN   EKL+  ++  +
Sbjct: 549 IWRRNDRYKSPYTECKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFS 608

Query: 164 DIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI---------------- 207
            +EQLW+  K + KL  I  +    LI K P+ +  P+L ++++                
Sbjct: 609 QLEQLWEGNKSFQKLKFIELSHSQHLI-KXPDFSGAPKLRRIILEGCTSLVKVHPSIGAL 667

Query: 208 -----LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLTGTA 260
                LNL G K+LKS  S I +LE L  L LSGCSKLK+ PE+     N+S L L GTA
Sbjct: 668 KKLIFLNLEGCKNLKSFLSSI-HLESLQILTLSGCSKLKKXPEVQGAMDNLSELSLKGTA 726

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           IK LP SIE L  L   +L +CK L+SLP    KLKSL  L L  C  L++LPE    + 
Sbjct: 727 IKGLPLSIEYLNGLALFNLEECKSLESLPGCXFKLKSLKTLILSNCLRLKKLPEIQENME 786

Query: 321 SPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPL 363
           S   L L +T +  +P SI     L  L L   +RL SLP  +
Sbjct: 787 SLKELFLDDTGLRELPSSIEHLNGLVLLKLKNCKRLASLPESI 829

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089535|emb|CBI39354.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 163/384 (42%), Positives = 211/384 (54%), Gaps = 52/384 (13%)

Query: 5   NASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHED 64
           ++ GF+  IGI  L DKSLI + S NK+ MHDLLQE+G EIVRQ+S  PG RSRL  HED
Sbjct: 284 DSCGFFFGIGIRNLEDKSLITI-SENKLCMHDLLQEMGWEIVRQKSEVPGERSRLRVHED 342

Query: 65  IYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGE------- 117
           I  VLT NTGTE +EGI LD+S+ KE   +   FTKM +LR LK  +   +         
Sbjct: 343 INHVLTTNTGTEAVEGIFLDLSESKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKK 402

Query: 118 -----------------NKCKMSYLQDPGF--AEVKYLHWHGYPLKSFPSNLSAEKLVLF 158
                             + K+   +D  F    ++ L+WHGYPLKSFPSN   EKLV  
Sbjct: 403 ELIAYTHDVWTERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVEL 462

Query: 159 EVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPR----------------- 201
            +  + ++QLW+  K + KL  I  +    L  KTP+ + +P                  
Sbjct: 463 NMCFSRLKQLWEGKKGFEKLKSIKLSHSQHL-TKTPDFSGVPNLRRLILKGCTSLVEVHP 521

Query: 202 ----LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLF 255
               L K++ LNL G K LKS  S I ++E L  L LSGCSKLK+ PEI     ++  LF
Sbjct: 522 SIGALKKLIFLNLEGCKKLKSFSSSI-HMESLQILTLSGCSKLKKFPEIQENMESLMELF 580

Query: 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC 315
           L G+ I ELPSSI  L  L +L+L +CK+L SLP S C+L SLG L L GCS L+ LP+ 
Sbjct: 581 LDGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELPDD 640

Query: 316 LGQLSSPITLGLTETNIERIPESI 339
           LG L     L    + I+ +P SI
Sbjct: 641 LGSLQCLAELNADGSGIQEVPPSI 664

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858727|emb|CAN82909.1| hypothetical protein VITISV_025072 [Vitis vinifera]

 Score =  244 bits (622), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 160/364 (43%), Positives = 214/364 (58%), Gaps = 38/364 (10%)

Query: 9   FYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESI-NPGNRSRLWHHEDIYE 67
           F+P   I  LVDKSLI + S NK+ MHDLLQE+G EIVRQESI +PG RSRL  HEDI++
Sbjct: 462 FFPVSEIGNLVDKSLITI-SDNKLYMHDLLQEMGWEIVRQESIKDPGKRSRLRVHEDIHD 520

Query: 68  VLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGE---------- 117
           VLT N GTE +EG+  D+S  KE  L+   F KM KLR L+FY+  F G           
Sbjct: 521 VLTTNKGTEAVEGMVFDLSASKELNLSVDAFAKMNKLRLLRFYNCQFYGSSEYLSEKELI 580

Query: 118 -----------------NKCKMSYLQDPGFAE--VKYLHWHGYPLKSFPSNLSAEKLVLF 158
                            N  K+   +D  F    ++ LHWHGYPLKS PSN   EKLV  
Sbjct: 581 ASTHDARRWMGYDNSPYNDSKLHLSRDFKFPSNNLRSLHWHGYPLKSLPSNFHPEKLVEL 640

Query: 159 EVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKS 218
            +  + ++QLW+  K + KL + I     + + KTP+ +  P+L +++   L G  SL  
Sbjct: 641 NMCYSLLKQLWEGKKAFEKL-KFIKLSHSQHLTKTPDFSAAPKLRRII---LNGCTSLVK 696

Query: 219 LPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNI---SWLFLTGTAIKELPSSIESLLRLE 275
           L   I  L+ L  L+L GCSKL++ PE+  GN+   S + L GTAI+ELPSSI SL RL 
Sbjct: 697 LHPSIGALKELIFLNLEGCSKLEKFPEVVQGNLEDLSGISLEGTAIRELPSSIGSLNRLV 756

Query: 276 YLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI 335
            L+L +C++L SLP S+C+L SL  L L GCS L++LP+ LG+L   + L +  T I+ +
Sbjct: 757 LLNLRNCEKLASLPQSICELISLQTLTLSGCSKLKKLPDDLGRLQCLVELNVDGTGIKEV 816

Query: 336 PESI 339
             SI
Sbjct: 817 TSSI 820

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 151/355 (42%), Positives = 211/355 (59%), Gaps = 35/355 (9%)

Query: 9   FYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESIN-PGNRSRLWHHEDIYE 67
           F+P   I VL + SLI+V S NK+ MH+LLQE+G EIVRQE++  PG RSRLW H+++  
Sbjct: 469 FFPANDIRVLEENSLILV-SNNKLCMHNLLQEMGWEIVRQENVKYPGKRSRLWFHDEVNH 527

Query: 68  VLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQD 127
           VLT NTGTE +EG+ LD+S  KE   +   FT+M +LR L+FY+   NG     + +L +
Sbjct: 528 VLTTNTGTEAVEGLVLDLSASKELHFSAGAFTEMNRLRVLRFYNVKMNG----NLKFLSN 583

Query: 128 PGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCH 187
                ++ L+WH YPLKS PSN   +KLV   +  + +EQLW   K + KL + I     
Sbjct: 584 ----NLRSLYWHEYPLKSLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKL-KFIKLSHS 638

Query: 188 RLIAKTPNPTLMPRL---------------------NKVVILNLRGSKSLKSLPSEIFNL 226
           + + +TP+ +  P L                      K++ LNL G K+LKS  S I ++
Sbjct: 639 QYLTRTPDFSGAPNLERLILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSFASSI-HM 697

Query: 227 EFLTKLDLSGCSKLKRLPEI--SSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR 284
             L  L LSGCSKLK+ PE+  +  ++  L L  TA++ELPSSI  L  L  L+L++CK+
Sbjct: 698 NSLQILTLSGCSKLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKK 757

Query: 285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESI 339
           L SLP SLCKL SL +L L GCS L++LP+ LG L   + L    + I+ +P SI
Sbjct: 758 LVSLPQSLCKLTSLQILTLAGCSELKKLPDELGSLRCLVNLNADGSGIQEVPPSI 812

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.806	0.251	0.320	2.6e-36
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.808	0.240	0.327	8e-36
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.774	0.254	0.361	1e-35
TAIR|locus:2146243	900	AT5G18360 [Arabidopsis thalian	0.789	0.353	0.340	6.3e-35
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.803	0.170	0.334	8.7e-35
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.766	0.289	0.334	4e-34
TAIR|locus:2170408	1139	AT5G46270 [Arabidopsis thalian	0.563	0.199	0.364	7.1e-34
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.640	0.255	0.364	9.6e-34
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.766	0.253	0.346	1.4e-33
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.774	0.267	0.342	9.1e-33

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 2.6e-36, P = 2.6e-36
 Identities = 111/346 (32%), Positives = 186/346 (53%)

Query:     2 KFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESIN-PGNRSRLW 60
             K  +  G+  EIGI++L +KSLIV  S   +++HDLL+++GRE+VRQ+++N P  R  LW
Sbjct:   451 KLLDLCGYAAEIGITILTEKSLIVE-SNGCVKIHDLLEQMGRELVRQQAVNNPAQRLLLW 509

Query:    61 HHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKC 120
               EDI  +L+ N+GT+ +EGI L++S++ E   +   F  +  L+ L FY  SF+GE + 
Sbjct:   510 DPEDICHLLSENSGTQLVEGISLNLSEISEVFASDRAFEGLSNLKLLNFYDLSFDGETRV 569

Query:   121 KM----SYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYS 176
              +    SYL  P   +++YL W GYPLK+ PS    E LV   +  +++E+LWD ++   
Sbjct:   570 HLPNGLSYL--P--RKLRYLRWDGYPLKTMPSRFFPEFLVELCMSNSNLEKLWDGIQPLR 625

Query:   177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSG 236
              L ++  + C  L+ + P+ +    L +   LNL   +SL  +   I NL+ L+   L+ 
Sbjct:   626 NLKKMDLSRCKYLV-EVPDLSKATNLEE---LNLSYCQSLVEVTPSIKNLKGLSCFYLTN 681

Query:   237 CSKLKRLP-EISSGNISWLFLTG-TAIKELPSSIESLLRLEYLDLSDCXXXXXXXXXXXX 294
             C +LK +P  I   ++  + ++G +++K  P    +  RL YL  +              
Sbjct:   682 CIQLKDIPIGIILKSLETVGMSGCSSLKHFPEISWNTRRL-YLSSTKIEELPSSISRLSC 740

Query:   295 XXXXGVLNLYGCSNLQRLPECLGQLSSPITLGLTETN-IERIPESI 339
                   L++  C  L+ LP  LG L S  +L L     +E +P+++
Sbjct:   741 LVK---LDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRLENLPDTL 783

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 8.0e-36, Sum P(2) = 8.0e-36
 Identities = 116/354 (32%), Positives = 174/354 (49%)

Query:     1 MKFHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLW 60
             M+     GF+P +GI VLVDK L+ +    K+ MH+L+Q +G+ I  + ++      RLW
Sbjct:   277 MQLFEGCGFFPHVGIYVLVDKCLVTIVK-RKMEMHNLIQIVGKAISNEGTVELDRHVRLW 335

Query:    61 HHEDIYEVL----TYNTG-----TEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYS 111
                 I  +L    T   G     TE IE I LDMS +K F + P  F  M  LRFLK YS
Sbjct:   336 DTSIIQPLLEDEETKLKGESKGTTEDIEVIFLDMSNLKFF-VKPDAFKSMHNLRFLKIYS 394

Query:   112 SSFNGENKCKM-SYLQD-PGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLW 169
             S+     + +    LQ  P   E++ LHW  YPL+S P +     LV   +P + +++LW
Sbjct:   395 SNPGKHQRIRFREALQSLPN--ELRLLHWEDYPLQSLPQHFDPTHLVELNMPYSKLQKLW 452

Query:   170 DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFL 229
                K+   L  +  +    L+       L+   N + +++L+G   ++S P+   +L+ L
Sbjct:   453 GGTKNLEMLKMVRLSHSQDLVEIEE---LIKSKN-IEVIDLQGCTKIQSFPATR-HLQHL 507

Query:   230 TKLDLSGCSKLK--RLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCXXX 285
               ++LSGC ++K  +L E      N+  L+L+GT I+E+ SSI  L  LE LDLS+C   
Sbjct:   508 RVINLSGCVEIKSTQLEEFQGFPRNLKELYLSGTGIREVTSSIH-LSSLEVLDLSNCKRL 566

Query:   286 XXXXXXXXXXXXXGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESI 339
                            L L GCS LQ + +    L     L L  T+I  +P SI
Sbjct:   567 QNLPMGKGNLASLIKLMLSGCSKLQNIQDLPTNLKE---LYLAGTSIREVPSSI 617

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 1.0e-35, P = 1.0e-35
 Identities = 120/332 (36%), Positives = 166/332 (50%)

Query:    15 ISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRS-RLWHHEDIYEVL-TYN 72
             I  L++K +I V S +++ MHDLL    RE+ R+     G    RLWHH+DI +VL    
Sbjct:   486 IKALMNKFMINV-SEDRVEMHDLLYTFARELCRRAYAQDGREPHRLWHHQDITDVLKNIE 544

Query:    73 TGTEKIEGICLDMSKVK-EFRLNPSTFTKMPKLRFLKFYSS----SFNGENKCKM-SYLQ 126
              G E + GI L+M+++K E  L+  TF  M  LR+LK YSS         NK  +   L 
Sbjct:   545 EGAE-VRGIFLNMNEMKREMSLDSCTFKSMCGLRYLKIYSSHCPQQCKPNNKINLPDGLN 603

Query:   127 DPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYS--KLNQIIHA 184
              P   EV+YLHW  +PLK  P + + + LV  ++P + IE++W   KH    KL  +   
Sbjct:   604 FP-LKEVRYLHWLEFPLKEIPPDFNPQNLVDLKLPHSKIERIWSDDKHKDTPKLKWV--N 660

Query:   185 VCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP 244
             + H   +   + + + +  ++V LNL+G  SLKSLP EI NL  L  L LS CS LK   
Sbjct:   661 LSHS--SNLWDISGLSKAQRLVFLNLKGCTSLKSLP-EI-NLVSLEILILSNCSNLKEFR 716

Query:   245 EISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCXXXXXXXXXXXXXXXXGVLNLY 304
              IS  N+  L+L GT+IKELP +   L RL  L++  C                  L L 
Sbjct:   717 VISQ-NLETLYLDGTSIKELPLNFNILQRLVILNMKGCAKLKEFPDCLDDLKALKELILS 775

Query:   305 GCSNLQRLPECLGQLSSPITLGLTETNIERIP 336
              C  LQ  P    ++     L L  T I  IP
Sbjct:   776 DCWKLQNFPAICERIKVLEILRLDTTTITEIP 807

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 6.3e-35, P = 6.3e-35
 Identities = 115/338 (34%), Positives = 172/338 (50%)

Query:     6 ASGFYPEIGISVLVDKSLIVVGSYNK-IRMHDLLQELGREIVRQESI-NPGNRSRLWHHE 63
             +SG     G+ VL  +SLI +   N+ I MH+LL++LGREIV ++SI  PG R  L    
Sbjct:   457 SSGLDVTFGLQVLTSRSLIHISRCNRTITMHNLLEQLGREIVCEQSIAEPGKRQFLMDAS 516

Query:    64 DIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFY-SSSFNGENKCKM 122
             +IY+VL  NTGT  + GI LD+SK+ E  LN   F  M  L FL+FY SSS   + +  +
Sbjct:   517 EIYDVLADNTGTGAVLGISLDISKINELFLNERAFGGMHNLLFLRFYKSSSSKDQPELHL 576

Query:   123 SYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQII 182
                 D    +++ LHW  +P+ S P +   + LV+  + E+ +E+LW+  +    L Q+ 
Sbjct:   577 PRGLDYLPRKLRLLHWDAFPMTSMPLSFCPQFLVVINIRESQLEKLWEGTQPLRSLKQMD 636

Query:   183 HAVCHRLIAKTPNPTLMPRLNKVVILN---LRGSKSLKSLPSEIFNLEFLTKLDLSGCSK 239
                    ++K+ N   +P L+K V +    L    SL  LPS I NL  L  LD+  CSK
Sbjct:   637 -------LSKSENLKEIPDLSKAVNIEELCLSYCGSLVMLPSSIKNLNKLVVLDMKYCSK 689

Query:   240 LKRLP-EISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCXXXXXXXXXXXXXXXX 298
             L+ +P  +   ++S L L G +  E    I S  ++ +L LS+                 
Sbjct:   690 LEIIPCNMDLESLSILNLDGCSRLESFPEISS--KIGFLSLSE-TAIEEIPTTVASWPCL 746

Query:   299 GVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP 336
               L++ GC NL+  P CL +      L L+ T IE +P
Sbjct:   747 AALDMSGCKNLKTFP-CLPKTIE--WLDLSRTEIEEVP 781

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 8.7e-35, P = 8.7e-35
 Identities = 114/341 (33%), Positives = 172/341 (50%)

Query:     8 GFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESIN-PGNRSRLWHHEDIY 66
             GF   +G   LVDKSL+ +  +N + M   +Q  GREIVRQES + PG+RSRLW+ + I 
Sbjct:  1082 GFSAHVGFRGLVDKSLLTISQHNLVDMLSFIQATGREIVRQESADRPGDRSRLWNADYIR 1141

Query:    67 EVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQ 126
              V   +TGT  IEGI LDM  +K F  NP+ F KM  LR LK Y S    E K  +S+ Q
Sbjct:  1142 HVFINDTGTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCSK--AEEKHGVSFPQ 1198

Query:   127 DPGF--AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVK-HYSKLNQIIH 183
                +  ++++ LHW  YPL S P + + E LV   +P +  ++LW   K  +   N  + 
Sbjct:  1199 GLEYLPSKLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLE 1258

Query:   184 AVCHRLIAKTPNPTLMPRLNKVVIL---NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKL 240
              +    ++ +   T +PRL+    L   +L G  SL SL   I  L+ L  L+L GCSKL
Sbjct:  1259 KLKKMRLSYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKL 1318

Query:   241 KRLPE-ISSGNISWLFLTGTA-IKELPSSIESLLRLEYLDLSDCXXXXXXXXXXXXXXXX 298
             + +P  +   ++  L L+G + +   P    ++  L Y+  +                  
Sbjct:  1319 ENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVKEL-YMGGTMIQEIPSSIKNLVLLEK- 1376

Query:   299 GVLNLYGCSNLQRLPECLGQLSSPITLGLTET-NIERIPES 338
               L+L    +L+ LP  + +L    TL L+   ++ER P+S
Sbjct:  1377 --LDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDS 1415

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 4.0e-34, P = 4.0e-34
 Identities = 112/335 (33%), Positives = 171/335 (51%)

Query:    14 GISVLVDKSLIVVGSYNKIRMHD-LLQELGREIVRQESIN-PGNRSRLWHHEDIYEVLTY 71
             G ++L D+SL+ + +   + MH  LLQ+LGR IV ++  N PG R  L   E+I +VLT 
Sbjct:   463 GFNILADRSLVRISTDGHVVMHHYLLQKLGRRIVHEQWPNEPGKRQFLIEAEEIRDVLTK 522

Query:    72 NTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFA 131
              TGTE ++GI  D S ++E  +    F  M  L+FL+ Y  SFN E   ++   +D  + 
Sbjct:   523 GTGTESVKGISFDTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIP--EDMEYI 580

Query:   132 E-VKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLI 190
               V+ LHW  YP KS P   + E LV   +P + +++LW  ++    L  I  +  + L 
Sbjct:   581 PPVRLLHWQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSIDMSFSYSL- 639

Query:   191 AKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP-EISSG 249
              + PN   + +   + IL+L   KSL  LP  I NL  L  L++  CS LK +P  I+  
Sbjct:   640 KEIPN---LSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSMLKVIPTNINLA 696

Query:   250 NISWLFLTGTA-IKELPSSIESLLRLEYLDLSDCXXXXXXXXXXXXXXXXGVLNLY-GCS 307
             ++  L +TG + ++  P  I S   ++ L+L D                    +LY G  
Sbjct:   697 SLERLDMTGCSELRTFPD-ISS--NIKKLNLGDTMIEDVPPSVGCWSRLD---HLYIGSR 750

Query:   308 NLQRL--PECLGQLSSPITLGLTETNIERIPESII 340
             +L+RL  P C+       +L L ++NIE IPESII
Sbjct:   751 SLKRLHVPPCI------TSLVLWKSNIESIPESII 779

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170408 AT5G46270 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 85/233 (36%), Positives = 126/233 (54%)

Query:    13 IGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESIN-PGNRSRLWHHEDIYEVLTY 71
             IG+  LVDKS+I V     + MH +LQE+GR+IVR +SI+ PG R  L    DI +VL+ 
Sbjct:   475 IGLKNLVDKSIIHVRR-GCVEMHRMLQEMGRKIVRTQSIDKPGKREFLVDPNDISDVLSE 533

Query:    72 NTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFA 131
               GT+K+ GI L+  ++ E  ++ S F  M  LRFL+  S +F    +  +    D    
Sbjct:   534 GIGTQKVLGISLNTGEIDELYVHESAFKGMSNLRFLEIDSKNFGKAGRLYLPESLDYLPP 593

Query:   132 EVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIA 191
              +K L W  +P++  PSN   E LV  ++P + + +LW+ V   + L ++   V    + 
Sbjct:   594 RLKLLCWPNFPMRCMPSNFRPENLVTLKMPNSKLHKLWEGVASLTCLKEM-DMVGSSNLK 652

Query:   192 KTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP 244
             + P+ + MP    + IL L   KSL  LPS I NL  L KLD+  C  L+ LP
Sbjct:   653 EIPDLS-MP--TNLEILKLGFCKSLVELPSSIRNLNKLLKLDMEFCHSLEILP 702

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 9.6e-34, P = 9.6e-34
 Identities = 100/274 (36%), Positives = 152/274 (55%)

Query:    13 IGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESI-NPGNRSRLWHHEDIYEVLTY 71
             IG+  LVDKSLI +G  + + MH +LQE+GREIVR++SI  PG R  L    DI +VL  
Sbjct:   468 IGLKNLVDKSLIRIGC-DTVEMHSMLQEMGREIVREQSIYEPGEREFLVDSTDILDVLND 526

Query:    72 NTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF- 130
             NTGT+K+ GI  DMS+++E  ++   F +MP LRFL+FY        + ++ +LQ+ GF 
Sbjct:   527 NTGTKKVLGISFDMSEIEELHIHKRAFKRMPNLRFLRFYKKLGKQSKEARL-HLQE-GFD 584

Query:   131 ----AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVC 186
                  ++K L W  YP++  PSN  A  LV+  +  + +E+LW  V+  + L ++     
Sbjct:   585 KFFPPKLKLLSWDDYPMRRMPSNFHAGYLVVLRMQHSKLEKLWQGVQPLTCLREM-QLWG 643

Query:   187 HRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP-E 245
              + + + P+ +L   L     L L    SL  LPS I NL  L  L + GC KL+ LP +
Sbjct:   644 SKKLKEIPDLSLATNLET---LYLNDCSSLVELPSSIKNLNKLWDLGMKGCEKLELLPTD 700

Query:   246 ISSGNISWLFLTGTA-IKELPSSIESLLRLEYLD 278
             I+  ++  L L   + +K  P    ++  L YL+
Sbjct:   701 INLKSLYRLDLGRCSRLKSFPDISSNISEL-YLN 733

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 1.4e-33, P = 1.4e-33
 Identities = 119/343 (34%), Positives = 173/343 (50%)

Query:    18 LVDKSLIVVGSYNKIRMHDLLQELGREI-VRQESIN---------PGNRS----RLWHHE 63
             LVDK LI + S N+I MHD+LQ + +EI ++ E+I           GN+     RLW  E
Sbjct:   468 LVDKCLITL-SDNRIEMHDMLQTMAKEISLKVETIGIRDCRWLSRHGNQCQWHIRLWDSE 526

Query:    64 DIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSS--SFNGENKCK 121
             DI ++LT   GT+KI GI LD SK++  RL+   F  M  L++LK Y S  S   E + K
Sbjct:   527 DICDLLTEGLGTDKIRGIFLDTSKLRAMRLSAKAFQGMYNLKYLKIYDSHCSRGCEAEFK 586

Query:   122 MSYLQDPGFA--EVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLN 179
             +   +   F   E+ YLHWHGYPL+S P +   + LV  ++P + +E++WD  K    L 
Sbjct:   587 LHLRRGLSFLPNELTYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLK 646

Query:   180 --QIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGC 237
                + H++  R      N   + RLN      L G  SLK LPS I  LE L  L+L  C
Sbjct:   647 WVDLSHSINLRQCLGLANAHNLERLN------LEGCTSLKKLPSTINCLEKLIYLNLRDC 700

Query:   238 SKLKRLPE-ISSGNISWLFLTG-TAIKELPSSIESLLRLEYLDLSDCXXXXXXXXXXXXX 295
             + L+ LP+ I + ++  L L+G +++K+ P   E++   E L L D              
Sbjct:   701 TSLRSLPKGIKTQSLQTLILSGCSSLKKFPLISENV---EVL-LLDGTVIKSLPESIQTF 756

Query:   296 XXXGVLNLYGCSNLQRLPECLGQLSSPITLGLTE-TNIERIPE 337
                 +LNL  C  L+ L   L +L     L L+  + +E  PE
Sbjct:   757 RRLALLNLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEVFPE 799

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 9.1e-33, P = 9.1e-33
 Identities = 113/330 (34%), Positives = 163/330 (49%)

Query:    15 ISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSR-LWHHEDIYEVLTYNT 73
             I  L +K LI      ++ MHDLL    RE+  + S   G++ R LW  +DI  V     
Sbjct:   494 IKALKNKFLIDTCD-GRVEMHDLLYRFSRELDLKASTQGGSKQRRLWVRQDIINVQQKTM 552

Query:    74 GTEKIEGICLDMSKVK-EFRLNPSTFTKMPKLRFLKFYSSSFNGE----NKCKM-SYLQD 127
             G   + GI LD+S+VK E  L+   F  M  LR+LK Y+S    E    NK  M   L+ 
Sbjct:   553 GAANVRGIFLDLSEVKVETSLDREHFKNMRNLRYLKLYNSHCPHECLTNNKINMPDGLEL 612

Query:   128 PGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCH 187
             P   EV+ LHW  +PL+  P++     LV  ++P ++IE+LWD VK    L  +   + H
Sbjct:   613 P-LKEVRCLHWLKFPLEELPNDFDPINLVDLKLPYSEIERLWDGVKDTPVLKWV--DLNH 669

Query:   188 RLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS 247
                +K  + + + +   +  LNL G  SL+SL     NL  L  L LS CS  K  P I 
Sbjct:   670 S--SKLCSLSGLSKAQNLQRLNLEGCTSLESLRD--VNLTSLKTLTLSNCSNFKEFPLIP 725

Query:   248 SGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCXXXXXXXXXXXXXXXXGVLNLYGCS 307
               N+  L+L GT+I +LP ++ +L RL  L++ DC                  L L GCS
Sbjct:   726 E-NLKALYLDGTSISQLPDNVGNLKRLVLLNMKDCKVLETIPTCVSELKTLQKLVLSGCS 784

Query:   308 NLQRLPECLGQLSSPITLGLTETNIERIPE 337
              L+  PE + + S  I L L  T+I+ +P+
Sbjct:   785 KLKEFPE-INKSSLKILL-LDGTSIKTMPQ 812

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021865001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (1160 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-53
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-21
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  190 bits (484), Expect = 3e-53
 Identities = 142/430 (33%), Positives = 205/430 (47%), Gaps = 89/430 (20%)

Query: 7   SGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIY 66
           S     IG+  LVDKSLI V   + + MH LLQE+G+EIVR +S  PG R  L   +DI 
Sbjct: 464 SDLDVNIGLKNLVDKSLIHV-REDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDIC 522

Query: 67  EVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQ 126
           +VL  NTGT+K+ GI LD+ ++ E  ++ + F  M  L FLKFY+  +  + K ++ +  
Sbjct: 523 DVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKW--DQKKEVRWHL 580

Query: 127 DPGF----AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQII 182
             GF     +++ L W  YPL+  PSN   E LV  ++  + +E+LWD V   + L  I 
Sbjct: 581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNID 640

Query: 183 HAVCHRLIAKTPN---------------------PTLMPRLNKVVILNLRGSKSLKSLPS 221
                 L  + P+                     P+ +  LNK+  L++   ++L+ LP+
Sbjct: 641 LRGSKNLK-EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699

Query: 222 EIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLD--- 278
            I NL+ L +L+LSGCS+LK  P+IS+ NISWL L  TAI+E PS+    LRLE LD   
Sbjct: 700 GI-NLKSLYRLNLSGCSRLKSFPDIST-NISWLDLDETAIEEFPSN----LRLENLDELI 753

Query: 279 -------------------------------LSDCKRLKSLPSSLCKLKSLGVLNLYGCS 307
                                          LSD   L  LPSS+  L  L  L +  C 
Sbjct: 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813

Query: 308 NLQRLP-------------------ECLGQLSSPIT-LGLTETNIERIPESIIQHFVLRY 347
           NL+ LP                        +S+ I+ L L+ T IE +P  I +   L +
Sbjct: 814 NLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSF 873

Query: 348 LLLSYSERLQ 357
           L ++    LQ
Sbjct: 874 LDMNGCNNLQ 883

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 96.9 bits (241), Expect = 2e-21
 Identities = 62/182 (34%), Positives = 101/182 (55%), Gaps = 7/182 (3%)

Query: 133 VKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRL-IA 191
           + +L      ++ FPSNL  E L    + E   E+LW+ V+  + L  ++     RL ++
Sbjct: 727 ISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786

Query: 192 KTPN----PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS 247
             P+    P+ +  L+K+  L +    +L++LP+ I NLE L  LDLSGCS+L+  P+IS
Sbjct: 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS 845

Query: 248 SGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS 307
           + NIS L L+ T I+E+P  IE    L +LD++ C  L+ +  ++ KLK L  ++   C 
Sbjct: 846 T-NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904

Query: 308 NL 309
            L
Sbjct: 905 AL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 7/157 (4%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSG--CSKLKRLPEISSGNISWLFLTGTAIKELPSSIES 270
              L+S  SE+  L  LT LDL     + +  L  +   N+  L L+   I+ LPS + +
Sbjct: 102 LNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN 161

Query: 271 LLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET 330
           L  L+ LDLS    L  LP  L  L +L  L+L G + +  LP  +  LS+   L L+  
Sbjct: 162 LPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNN 219

Query: 331 NIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLAR 367
           +I  +  S+     L+ L        +    P  +  
Sbjct: 220 SIIELLSSL---SNLKNLSGLELSNNKLEDLPESIGN 253

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 238 SKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKS 297
           SKL+ L  I   N+S   + G     +P S+ S+  LE LDLS      S+P SL +L S
Sbjct: 439 SKLRHLQSI---NLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 298 LGVLNLYGCSNLQRLPECLG 317
           L +LNL G S   R+P  LG
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 44/231 (19%)

Query: 95  PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHW--HGYPLKSFPSNLSA 152
           P++ T +  L FL   S+   G+   ++         ++K L W   GY      +NLS 
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPREL--------GQMKSLKWIYLGY------NNLSG 226

Query: 153 EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG 212
           E      +P  +I  L       + LN +   V + L    P P+ +  L  +  L L  
Sbjct: 227 E------IP-YEIGGL-------TSLNHL-DLVYNNLTG--PIPSSLGNLKNLQYLFLYQ 269

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI----SSGNISWLF---LTGTAIKELP 265
           +K    +P  IF+L+ L  LDLS  S    +PE+     +  I  LF    TG     +P
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK----IP 325

Query: 266 SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECL 316
            ++ SL RL+ L L   K    +P +L K  +L VL+L   +    +PE L
Sbjct: 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 5/167 (2%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIFNLEF-LTKLDLSGCSKLKRLPEISSGNISWLFLTGT 259
           RL  +  +NL  ++    +P +IF     L  L+LS  +    +P  S  N+  L L+  
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN 150

Query: 260 AIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQ 318
            +  E+P+ I S   L+ LDL     +  +P+SL  L SL  L L     + ++P  LGQ
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210

Query: 319 LSSP--ITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPL 363
           + S   I LG    + E IP  I     L +L L Y+     +PS L
Sbjct: 211 MKSLKWIYLGYNNLSGE-IPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.8
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.69
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.49
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.46
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.44
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.27
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
PLN03150	623	hypothetical protein; Provisional	98.87
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.84
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.76
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.71
PLN03150	623	hypothetical protein; Provisional	98.61
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.56
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.47
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.34
PRK15386	426	type III secretion protein GogB; Provisional	98.05
PRK15386	426	type III secretion protein GogB; Provisional	98.05
KOG4341	483	consensus F-box protein containing LRR [General fu	98.01
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.95
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.79
KOG4341	483	consensus F-box protein containing LRR [General fu	97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.39
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.17
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.85
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.36
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.95
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.49
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.15
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.89
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.88
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.57
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.49
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.96
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.67
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.58
smart00370	26	LRR Leucine-rich repeats, outliers.	88.56
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.56

>PLN03210 Resistant to P

Probab=100.00  E-value=7.8e-38  Score=330.52  Aligned_cols=366  Identities=36%  Similarity=0.543  Sum_probs=288.5

Q ss_pred             cccccCCCcccchHhhhcCccEEEccCCeEEccHHHHHHHHHHHhhhcCCCCCccccCChhHHHHHHhhCcCCCceeEEE
Q 015671            3 FHNASGFYPEIGISVLVDKSLIVVGSYNKIRMHDLLQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTGTEKIEGIC   82 (403)
Q Consensus         3 ~~~~~~~~~~~~~~~Lv~~sl~~~~~~~~~~mHdll~dla~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (403)
                      ++++.+++++.++++|+++||+++. .++|+|||++||||+++++++...|+.+.++|...++..++..+++...++++.
T Consensus       460 ~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~  538 (1153)
T PLN03210        460 LLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGIT  538 (1153)
T ss_pred             HHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEE
Confidence            3556788899999999999999987 689999999999999999999878999999999999999999999999999999


Q ss_pred             ecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC--CCeeEEEecCCCCCCCCCCCCCCCceEEEc
Q 015671           83 LDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSFPSNLSAEKLVLFEV  160 (403)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l  160 (403)
                      ++.....+..+...+|.+|++|+.|.++.+.+.........+|..+..  .+||.|.+.+++++.+|..+.+.+|++|++
T Consensus       539 l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L  618 (1153)
T PLN03210        539 LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQM  618 (1153)
T ss_pred             eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEEC
Confidence            999999999999999999999999999876543222223456677666  679999999999999999998999999999


Q ss_pred             cCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCC
Q 015671          161 PENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKL  240 (403)
Q Consensus       161 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  240 (403)
                      .++.+..+|..+..+++|+.|+++++..+. .+|.   +..+++|+.|++.+|.....+|..++.+++|+.|++++|..+
T Consensus       619 ~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        619 QGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             cCccccccccccccCCCCCEEECCCCCCcC-cCCc---cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence            999999999888999999999999886665 6664   556777888888887777777777777777777777777666


Q ss_pred             CCCccccc----------------------CCCcEEEecCccCcccChhh------------------------------
Q 015671          241 KRLPEISS----------------------GNISWLFLTGTAIKELPSSI------------------------------  268 (403)
Q Consensus       241 ~~~~~~~~----------------------~~L~~L~l~~~~~~~l~~~~------------------------------  268 (403)
                      +.+|....                      .+|++|+++++.++.+|..+                              
T Consensus       695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~  774 (1153)
T PLN03210        695 EILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT  774 (1153)
T ss_pred             CccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhh
Confidence            65554322                      34555555555555554321                              


Q ss_pred             hCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCC---------------------CCCCEEEc
Q 015671          269 ESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL---------------------SSPITLGL  327 (403)
Q Consensus       269 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l---------------------~~L~~L~l  327 (403)
                      ..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... ++                     ++|+.|++
T Consensus       775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~L  853 (1153)
T PLN03210        775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNL  853 (1153)
T ss_pred             hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeEC
Confidence            012356666666666666677777777777777777776655555432 22                     45667777


Q ss_pred             cCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCC--------eEeccCCCCCCC
Q 015671          328 TETNIERIPESIIQHFVLRYLLLSYSERLQSLPSP--------LFLARGCLAMQP  374 (403)
Q Consensus       328 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~--------~l~i~~c~~l~~  374 (403)
                      ++|.++.+|.++..+++|+.|++++|+.++.+|..        .+++.+|++|+.
T Consensus       854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             CCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            77777888888999999999999999999998873        678889998875

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=2.6e-26  Score=242.39  Aligned_cols=273  Identities=21%  Similarity=0.240  Sum_probs=165.2

Q ss_pred             ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCC-C-CCeeEEEecCCCCCC-CCCCCCCC
Q 015671           77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLKS-FPSNLSAE  153 (403)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~-~~L~~L~l~~~~~~~-lp~~~~l~  153 (403)
                      .+..+.+.  ........+..|..+++|++|++++|.+.|.      +|..+. . .+|++|++++|.+.. +|. ..++
T Consensus        70 ~v~~L~L~--~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~------ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~  140 (968)
T PLN00113         70 RVVSIDLS--GKNISGKISSAIFRLPYIQTINLSNNQLSGP------IPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIP  140 (968)
T ss_pred             cEEEEEec--CCCccccCChHHhCCCCCCEEECCCCccCCc------CChHHhccCCCCCEEECcCCccccccCc-cccC
Confidence            44444443  3322233466788899999999999887643      344433 3 777777777777653 332 2466


Q ss_pred             CceEEEccCCCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEE
Q 015671          154 KLVLFEVPENDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKL  232 (403)
Q Consensus       154 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (403)
                      +|++|++++|.+. .+|..++.+++|++|++++|.... .+|.  .+.++++|++|++++|.+.+.+|..++.+++|+.|
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc-cCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            7777777777665 356666777777777777763222 3332  45666666777776666666666666666666666


Q ss_pred             eecCCCCCCCCccccc--CCCcEEEecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671          233 DLSGCSKLKRLPEISS--GNISWLFLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL  309 (403)
Q Consensus       233 ~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  309 (403)
                      ++++|...+..|..+.  ++|++|++++|.++ .+|..++.+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            6666655555554443  66666666666554 45555666666666666666655555555555666666666666555


Q ss_pred             cccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          310 QRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       310 ~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      +.+|..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|.
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  350 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK  350 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence            555555555566666666665555 4455555555555555555555544443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=2.6e-25  Score=234.72  Aligned_cols=258  Identities=24%  Similarity=0.295  Sum_probs=141.9

Q ss_pred             hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCCcc-cccc
Q 015671           95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK-SFPSNL-SAEKLVLFEVPENDIE-QLWD  170 (403)
Q Consensus        95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~-~lp~~~-~l~~L~~L~l~~~~~~-~l~~  170 (403)
                      +..|+.+++||+|++++|.+.+      ..|..+.. ++|++|++++|.+. .+|..+ ++++|++|++++|.+. .+|.
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  230 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVG------KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY  230 (968)
T ss_pred             ChHHhcCCCCCEEECccCcccc------cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence            4455666666666666665432      23334444 56666666666543 345444 4666666666666655 3455


Q ss_pred             ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--
Q 015671          171 CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--  248 (403)
Q Consensus       171 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--  248 (403)
                      .++.+++|++|++++|.. .+.+|  ..++++++|++|++++|.+.+.+|..+..+++|+.|++++|...+..|....  
T Consensus       231 ~l~~l~~L~~L~L~~n~l-~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  307 (968)
T PLN00113        231 EIGGLTSLNHLDLVYNNL-TGPIP--SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL  307 (968)
T ss_pred             hHhcCCCCCEEECcCcee-ccccC--hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence            566666666666666522 21333  2455556666666666655555555555666666666666555444444333  


Q ss_pred             CCCcEEEecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671          249 GNISWLFLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL  327 (403)
Q Consensus       249 ~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  327 (403)
                      ++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|.++..+++|+.|++
T Consensus       308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  387 (968)
T PLN00113        308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL  387 (968)
T ss_pred             CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence            55666666655554 44455555666666666666555555555555556666666555555555555544555555555


Q ss_pred             cCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          328 TETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       328 ~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      ++|.+. .+|..+..+++|+.|++++|...+.+|.
T Consensus       388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~  422 (968)
T PLN00113        388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS  422 (968)
T ss_pred             cCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence            555444 4444455555555555555554444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=2.8e-25  Score=206.43  Aligned_cols=277  Identities=20%  Similarity=0.296  Sum_probs=182.3

Q ss_pred             cCCCceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-
Q 015671           73 TGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL-  150 (403)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-  150 (403)
                      .....++++.+...+++.-.+ |..+-++..|.+|+++.|.+       ...|..+.+ +++-+|+|++|+++++|... 
T Consensus        75 s~Lp~LRsv~~R~N~LKnsGi-P~diF~l~dLt~lDLShNqL-------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf  146 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDNNLKNSGI-PTDIFRLKDLTILDLSHNQL-------REVPTNLEYAKNSIVLNLSYNNIETIPNSLF  146 (1255)
T ss_pred             ccchhhHHHhhhccccccCCC-Cchhcccccceeeecchhhh-------hhcchhhhhhcCcEEEEcccCccccCCchHH
Confidence            334444544443344444444 44566899999999999987       588999999 99999999999999999776 


Q ss_pred             -CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCC-CCccCccCCCCCC
Q 015671          151 -SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKS-LKSLPSEIFNLEF  228 (403)
Q Consensus       151 -~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~  228 (403)
                       ++..|-+|||+.|.+..+|+.+..+.+|+.|.+++|....   ..+..++.+++|+.|.+++..- ...+|.++..+.+
T Consensus       147 inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h---fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N  223 (1255)
T KOG0444|consen  147 INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH---FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN  223 (1255)
T ss_pred             HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH---HHHhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence             8999999999999999999999999999999999985321   1122344455555555554221 1234444545555


Q ss_pred             CCEEeecCCCCCCCCccccc-------------------------CCCcEEEecCccCcccChhhhCCCCCCEEecccCc
Q 015671          229 LTKLDLSGCSKLKRLPEISS-------------------------GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCK  283 (403)
Q Consensus       229 L~~L~l~~~~~~~~~~~~~~-------------------------~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  283 (403)
                      |..++++.|+ +...|....                         .+|+.|+++.|.++.+|..+.++++|+.|.+.+|+
T Consensus       224 L~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  224 LRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             hhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc
Confidence            5555555422 223333222                         45555555555555555555666666666555555


Q ss_pred             CC-CcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCC
Q 015671          284 RL-KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSP  362 (403)
Q Consensus       284 ~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~  362 (403)
                      +. .-+|++++++..|+++..++ +..+.+|+.++.|..|+.|.|+.|.+..+|..+.-++.|+.|++..|+.+-.-|.|
T Consensus       303 L~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  303 LTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             ccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence            43 23566666666666666655 44566677777777777777777777777777777777777777777776666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=7.6e-24  Score=195.45  Aligned_cols=265  Identities=20%  Similarity=0.173  Sum_probs=161.9

Q ss_pred             ceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCcc
Q 015671           89 KEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIE  166 (403)
Q Consensus        89 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~  166 (403)
                      ....+..+.++.++.||+||++.|.+.     ....+..-...++++|+|++|.++.+... | .+.+|.+|.|++|+++
T Consensus       136 ~I~sv~se~L~~l~alrslDLSrN~is-----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit  210 (873)
T KOG4194|consen  136 LISSVTSEELSALPALRSLDLSRNLIS-----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT  210 (873)
T ss_pred             ccccccHHHHHhHhhhhhhhhhhchhh-----cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence            334455677888899999999998873     12222222228899999999999988543 4 6889999999999999


Q ss_pred             cccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCC------------------------CccCc
Q 015671          167 QLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSL------------------------KSLPS  221 (403)
Q Consensus       167 ~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------------------~~~~~  221 (403)
                      .+|. .++++++|+.|++..|+. .  +-....|..|++|+.|.+..|.+.                        ..-..
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~i-r--ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g  287 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRI-R--IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG  287 (873)
T ss_pred             ccCHHHhhhcchhhhhhccccce-e--eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence            9874 778899999999988732 1  111234555555555555555433                        32333


Q ss_pred             cCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCC
Q 015671          222 EIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSL  298 (403)
Q Consensus       222 ~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  298 (403)
                      ++.++++|+.|+++.|.....-+....  ..|++|+++.|.++.++ .++..+..|+.|.++.|.+...-...|..+++|
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL  367 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL  367 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence            344444444444444433222222211  55555555555555444 233445555555555554332222234456677


Q ss_pred             cEEeecCCCCCcccCc---ccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCcCCC
Q 015671          299 GVLNLYGCSNLQRLPE---CLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       299 ~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      ++|+|++|.+.+.+.+   .+.++++|+.|.+.+|++..+|. .+..++.|++|++.+|.+-..-|.
T Consensus       368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n  434 (873)
T KOG4194|consen  368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN  434 (873)
T ss_pred             hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence            7777777666554432   35667777777777777776664 456777777777777765544444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.86  E-value=2.6e-22  Score=203.23  Aligned_cols=359  Identities=19%  Similarity=0.239  Sum_probs=193.4

Q ss_pred             CcccchHhhhcCccEEEcc----CCeEEccHHHHHHHHHHHhhhcC-------CCCCccc------cCCh-------hHH
Q 015671           10 YPEIGISVLVDKSLIVVGS----YNKIRMHDLLQELGREIVRQESI-------NPGNRSR------LWHH-------EDI   65 (403)
Q Consensus        10 ~~~~~~~~Lv~~sl~~~~~----~~~~~mHdll~dla~~~~~~e~~-------~~~~~~~------l~~~-------~~~   65 (403)
                      .|+.|+++||++||++..+    ..+|+|||+|||||.++|++..+       ..+...+      .|..       ...
T Consensus       455 ~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~  534 (889)
T KOG4658|consen  455 VGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNK  534 (889)
T ss_pred             chHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccc
Confidence            6788999999999999874    26899999999999999994331       1100000      0000       000


Q ss_pred             HHHHhhCcCCCceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC
Q 015671           66 YEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK  144 (403)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~  144 (403)
                      ...+........++.+.+-...-........+|..||.||+||+++|.      ....+|..+.. .+||||+++++.+.
T Consensus       535 ~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~------~l~~LP~~I~~Li~LryL~L~~t~I~  608 (889)
T KOG4658|consen  535 IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS------SLSKLPSSIGELVHLRYLDLSDTGIS  608 (889)
T ss_pred             hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC------ccCcCChHHhhhhhhhcccccCCCcc
Confidence            111111111112333222111001223345557777777777777654      22466677776 77777777777777


Q ss_pred             CCCCCC-CCCCceEEEccCCCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCcc
Q 015671          145 SFPSNL-SAEKLVLFEVPENDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSE  222 (403)
Q Consensus       145 ~lp~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  222 (403)
                      .+|..+ +++.|.+|++..+... .++.....+++||+|.+....... .......+.++.+|+.+.+.....  .+-..
T Consensus       609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el~~Le~L~~ls~~~~s~--~~~e~  685 (889)
T KOG4658|consen  609 HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-DKLLLKELENLEHLENLSITISSV--LLLED  685 (889)
T ss_pred             ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-chhhHHhhhcccchhhheeecchh--HhHhh
Confidence            777777 6777777777766433 334455557777777776542111 111123344455555555433221  11111


Q ss_pred             CCCCCCCCEE----eecCCCCCCCCccccc-CCCcEEEecCccCcccCh-hh-----hC-CCCCCEEecccCcCCCcCCc
Q 015671          223 IFNLEFLTKL----DLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPS-SI-----ES-LLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       223 ~~~l~~L~~L----~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~-~~-----~~-l~~L~~L~l~~~~~~~~~~~  290 (403)
                      +..++.|.++    .+.++........... .+|+.|.+.++.+.+... +.     .. ++++..+.+..|..... +.
T Consensus       686 l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~-l~  764 (889)
T KOG4658|consen  686 LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD-LT  764 (889)
T ss_pred             hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-cc
Confidence            2233333322    2222222222222222 788888888776653221 11     11 33444444445443222 23


Q ss_pred             cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc---------Ch---hhhcCCCCCEEeccCCcCCCc
Q 015671          291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI---------PE---SIIQHFVLRYLLLSYSERLQS  358 (403)
Q Consensus       291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l---------~~---~~~~~~~L~~L~l~~c~~l~~  358 (403)
                      +..-.++|+.|.+.+|...+.+.+..+.+..++.+.+..+.+..+         |.   .--.++.|+.+.+..|+.++.
T Consensus       765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~  844 (889)
T KOG4658|consen  765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGK  844 (889)
T ss_pred             hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccccc
Confidence            333467888888888887777665555555554433333333211         11   011334588888999999999


Q ss_pred             CCC-CeEeccCC-CCCCCchhh
Q 015671          359 LPS-PLFLARGC-LAMQPFLGI  378 (403)
Q Consensus       359 lp~-~~l~i~~c-~~l~~~~~~  378 (403)
                      +|. ..+.|.+| +.+...|..
T Consensus       845 ~P~~~~~~i~~~~~~~~~~~~~  866 (889)
T KOG4658|consen  845 LPLLSTLTIVGCEEKLKEYPDG  866 (889)
T ss_pred             CccccccceeccccceeecCCc
Confidence            999 68888887 666665554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=2.5e-22  Score=185.54  Aligned_cols=270  Identities=17%  Similarity=0.143  Sum_probs=151.6

Q ss_pred             EecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEE
Q 015671           82 CLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL--SAEKLVLF  158 (403)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~--~l~~L~~L  158 (403)
                      .+++++.+.-++....|.++++|+.+.+..|.+.       .+|....- -+|+.|+|..|-+.++.+.-  .++.|+.|
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl  154 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-------RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL  154 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhh-------hcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence            3566666666677888899999999999888763       45554444 55666666666666554332  35566666


Q ss_pred             EccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCC
Q 015671          159 EVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGC  237 (403)
Q Consensus       159 ~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  237 (403)
                      ||+.|.++.++. .+..-.++++|++++|. ++ .+. ...|.++.+|..|.+++|.+...-+..|..+++|+.|++..|
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~-It-~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNR-IT-TLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeecccc-cc-ccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence            666666666653 34444566666666651 11 111 234455555555666555533222233444555555555443


Q ss_pred             C-----------------------CCCCCccccc---CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCc
Q 015671          238 S-----------------------KLKRLPEISS---GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       238 ~-----------------------~~~~~~~~~~---~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~  290 (403)
                      .                       .+..+.+..+   ..+++|++..|.+..+. .++-.++.|+.|++++|.+...-+.
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID  311 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence            2                       1222222111   66666667666666554 3446677777777777776666666


Q ss_pred             cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCcCCC
Q 015671          291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      .+.-.++|++|+|++|.+..--+..|..+..|++|.|+.|++..+.. .+..+++|++|+++.|.....+-+
T Consensus       312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            66667777777777776655444444444444444444444442221 223444555555555554444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=6.2e-24  Score=197.61  Aligned_cols=179  Identities=20%  Similarity=0.322  Sum_probs=92.4

Q ss_pred             hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC--CCCCCC-CCCCceEEEccCCCcccccc
Q 015671           95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK--SFPSNL-SAEKLVLFEVPENDIEQLWD  170 (403)
Q Consensus        95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~--~lp~~~-~l~~L~~L~l~~~~~~~l~~  170 (403)
                      |+.++.+.+|..|.+.+|.+       .++...+.. +.||.+.+..|+++  .+|..+ .+..|..|||+.|++..+|.
T Consensus        48 PeEL~~lqkLEHLs~~HN~L-------~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~  120 (1255)
T KOG0444|consen   48 PEELSRLQKLEHLSMAHNQL-------ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT  120 (1255)
T ss_pred             hHHHHHHhhhhhhhhhhhhh-------HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch
Confidence            55555566666666665544       233344444 55555555555543  344444 55555555555555555555


Q ss_pred             ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCC-----------
Q 015671          171 CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK-----------  239 (403)
Q Consensus       171 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----------  239 (403)
                      .+.+-+++-.|++++| ++. .||. ..+-+|+.|-.|++++|+ ...+|+.+..+..|++|.+++|+.           
T Consensus       121 ~LE~AKn~iVLNLS~N-~Ie-tIPn-~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm  196 (1255)
T KOG0444|consen  121 NLEYAKNSIVLNLSYN-NIE-TIPN-SLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM  196 (1255)
T ss_pred             hhhhhcCcEEEEcccC-ccc-cCCc-hHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc
Confidence            5555555555555555 232 3443 233445555555555544 344555455555555555555431           


Q ss_pred             --------------CCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcC
Q 015671          240 --------------LKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR  284 (403)
Q Consensus       240 --------------~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~  284 (403)
                                    +..+|....  .+|+.++++.|.+..+|..+-.+++|+.|++++|.+
T Consensus       197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI  257 (1255)
T ss_pred             hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence                          122333322  555556666666555555555555555555555553

>PLN03210 Resistant to P

Probab=99.80  E-value=2.2e-18  Score=183.20  Aligned_cols=221  Identities=28%  Similarity=0.431  Sum_probs=136.0

Q ss_pred             CCeeEEEecCCC-CCCCCCCCCCCCceEEEccCC-CccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE
Q 015671          131 AEVKYLHWHGYP-LKSFPSNLSAEKLVLFEVPEN-DIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL  208 (403)
Q Consensus       131 ~~L~~L~l~~~~-~~~lp~~~~l~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  208 (403)
                      ++|++|+++++. +..+|....+++|++|++.+| .+..+|..++++++|+.|++++|..+. .+|.  . .++++|+.|
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~--~-i~l~sL~~L  709 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPT--G-INLKSLYRL  709 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCC--c-CCCCCCCEE
Confidence            555555555433 444444334555555555554 234455555555555555555554444 4432  1 144555555


Q ss_pred             EecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccc--------------------------------cCCCcEEEe
Q 015671          209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS--------------------------------SGNISWLFL  256 (403)
Q Consensus       209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------------------------~~~L~~L~l  256 (403)
                      ++++|.....+|..   .++|+.|+++++. +..+|...                                .++|+.|++
T Consensus       710 ~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L  785 (1153)
T PLN03210        710 NLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL  785 (1153)
T ss_pred             eCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence            55555443333321   2334444444432 22222211                                046777777


Q ss_pred             cCcc-CcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCc--------------------ccCcc
Q 015671          257 TGTA-IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQ--------------------RLPEC  315 (403)
Q Consensus       257 ~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------------~~~~~  315 (403)
                      ++|. +..+|.+++.+++|+.|++++|..++.+|..+ ++++|+.|++++|....                    .+|.+
T Consensus       786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s  864 (1153)
T PLN03210        786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW  864 (1153)
T ss_pred             CCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence            7653 45788888888899999998888777777654 56677777777664432                    35666


Q ss_pred             cCCCCCCCEEEccCC-CCcccChhhhcCCCCCEEeccCCcCCCcCC
Q 015671          316 LGQLSSPITLGLTET-NIERIPESIIQHFVLRYLLLSYSERLQSLP  360 (403)
Q Consensus       316 l~~l~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp  360 (403)
                      +..+++|+.|++++| .+..+|..+..++.|+.+++++|..+..++
T Consensus       865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence            778999999999996 677898888999999999999998876554

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.74  E-value=2.1e-20  Score=165.74  Aligned_cols=223  Identities=22%  Similarity=0.266  Sum_probs=130.0

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccc------------------
Q 015671          131 AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIA------------------  191 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~------------------  191 (403)
                      .++.+|++.+|.++++|..+ .+++|.+||+++|.++.+|..++++ +|++|.+.+|..-+.                  
T Consensus       252 ~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  252 NSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             ccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence            66777777777777777666 4666777777777777777777777 777777666641110                  


Q ss_pred             cC----CC----------------CCCCCCCCCCcEEEecCCCCCCccCccCCCCCC---CCEEeecCC-----------
Q 015671          192 KT----PN----------------PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEF---LTKLDLSGC-----------  237 (403)
Q Consensus       192 ~~----~~----------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~-----------  237 (403)
                      .+    +.                ......+.+.+.|++++- ....+|..+..-..   ....+++.|           
T Consensus       331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~  409 (565)
T KOG0472|consen  331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE  409 (565)
T ss_pred             hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence            00    00                000001122333333331 12233322211111   233333332           


Q ss_pred             ------------CCCCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEee
Q 015671          238 ------------SKLKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNL  303 (403)
Q Consensus       238 ------------~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  303 (403)
                                  +.++..|....  +.++.|++++|-+.++|..++.+..|+.|+++.|+ ...+|..+..+..++.+-.
T Consensus       410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtlla  488 (565)
T KOG0472|consen  410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLA  488 (565)
T ss_pred             HHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHh
Confidence                        22222333322  66666666666666666666666666666666664 3445555444455555544


Q ss_pred             cCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671          304 YGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       304 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                      ++|.+...-++.+.++.+|..|++.+|.+..+|+.++++.+|++|.+.+|+..
T Consensus       489 s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  489 SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            44443333344588999999999999999999999999999999999999865

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.70  E-value=2.5e-16  Score=156.94  Aligned_cols=223  Identities=21%  Similarity=0.186  Sum_probs=141.1

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI  181 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  181 (403)
                      ++|+.|++.+|.+.       .+|..  .++|++|++++|.++.+|..  .++|+.|++..|.+..+|..   ..+|+.|
T Consensus       222 ~~L~~L~L~~N~Lt-------~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L  287 (788)
T PRK15387        222 AHITTLVIPDNNLT-------SLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL---PSGLCKL  287 (788)
T ss_pred             cCCCEEEccCCcCC-------CCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc---hhhcCEE
Confidence            36778888877763       23321  16778888888777777653  34666666666666655532   2344455


Q ss_pred             ecccccCccccCCCCCCCCCCCCCcEEEecCCCCCC-------------------ccCccCCCCCCCCEEeecCCCCCCC
Q 015671          182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLK-------------------SLPSEIFNLEFLTKLDLSGCSKLKR  242 (403)
Q Consensus       182 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------------~~~~~~~~l~~L~~L~l~~~~~~~~  242 (403)
                      ++++| .+. .+|.     .+++|+.|++++|.+..                   .+|.   ...+|+.|++++|. +..
T Consensus       288 ~Ls~N-~Lt-~LP~-----~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~-Ls~  356 (788)
T PRK15387        288 WIFGN-QLT-SLPV-----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQ-LAS  356 (788)
T ss_pred             ECcCC-ccc-cccc-----cccccceeECCCCccccCCCCcccccccccccCccccccc---cccccceEecCCCc-cCC
Confidence            55554 222 2221     12344555555544322                   2332   11357777777643 334


Q ss_pred             CcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCC
Q 015671          243 LPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSP  322 (403)
Q Consensus       243 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  322 (403)
                      +|.. ..+|+.|++++|.++.+|..   .++|+.|++++|.+. .+|..   .++|+.|++++|.+. .+|..   ..+|
T Consensus       357 LP~l-p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L  424 (788)
T PRK15387        357 LPTL-PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGL  424 (788)
T ss_pred             CCCC-CcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhh
Confidence            5543 25667777777777766642   356888888888755 45543   357888999988765 46643   3568


Q ss_pred             CEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          323 ITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       323 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      +.|++++|.++.+|..+..+++|+.|++++|+..+..|.
T Consensus       425 ~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        425 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence            889999999999999999999999999999998766555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.69  E-value=1.6e-16  Score=159.13  Aligned_cols=226  Identities=21%  Similarity=0.280  Sum_probs=149.6

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI  181 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  181 (403)
                      +.|+.|++++|.+.       .+|..+. .+|++|++++|.++.+|..+ ..+|+.|++++|.+..+|..+.  .+|+.|
T Consensus       199 ~~L~~L~Ls~N~Lt-------sLP~~l~-~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L  267 (754)
T PRK15370        199 EQITTLILDNNELK-------SLPENLQ-GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQSL  267 (754)
T ss_pred             cCCcEEEecCCCCC-------cCChhhc-cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCEE
Confidence            46778888887763       3333222 57888888888877777644 2467888888888877776543  478888


Q ss_pred             ecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccC
Q 015671          182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAI  261 (403)
Q Consensus       182 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  261 (403)
                      ++++| .+. .+|.  .+.  ++|+.|++++|.+. .+|..+  .++|+.|++++|.. ..+|....++|+.|.+++|.+
T Consensus       268 ~Ls~N-~L~-~LP~--~l~--~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N~L  337 (754)
T PRK15370        268 DLFHN-KIS-CLPE--NLP--EELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSL-TALPETLPPGLKTLEAGENAL  337 (754)
T ss_pred             ECcCC-ccC-cccc--ccC--CCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCcc-ccCCccccccceeccccCCcc
Confidence            88776 444 4443  222  46788888887643 455433  24677788877543 345554447788888888888


Q ss_pred             cccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhh--
Q 015671          262 KELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESI--  339 (403)
Q Consensus       262 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~--  339 (403)
                      +.+|..+.  ++|+.|++++|.+. .+|..+  .+.|+.|++++|.+. .+|+.+.  .+|+.|++++|+++.+|..+  
T Consensus       338 t~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~  409 (754)
T PRK15370        338 TSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPH  409 (754)
T ss_pred             ccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHH
Confidence            87776553  67888888887754 466544  357888888887655 4554442  36788888888888766544  


Q ss_pred             --hcCCCCCEEeccCCcCC
Q 015671          340 --IQHFVLRYLLLSYSERL  356 (403)
Q Consensus       340 --~~~~~L~~L~l~~c~~l  356 (403)
                        ..++.+..|++.+|+..
T Consensus       410 ~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        410 FRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HhhcCCCccEEEeeCCCcc
Confidence              34477788888888753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.69  E-value=1.5e-19  Score=175.43  Aligned_cols=65  Identities=23%  Similarity=0.176  Sum_probs=45.1

Q ss_pred             CCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChh-hhcCCCCCEEeccCCcCCCcCCCC
Q 015671          297 SLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPES-IIQHFVLRYLLLSYSERLQSLPSP  362 (403)
Q Consensus       297 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp~~  362 (403)
                      .|+.|++.+|.+....-+.+.++.+|+.|+|++|++..+|.. +.+++.|+.|+++||+ ++.+|..
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t  425 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDT  425 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHH
Confidence            345555555555555445667788888888888888888764 4777888888888874 5566653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.69  E-value=3.2e-20  Score=164.58  Aligned_cols=202  Identities=27%  Similarity=0.335  Sum_probs=92.2

Q ss_pred             cccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCC
Q 015671          123 SYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMP  200 (403)
Q Consensus       123 ~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  200 (403)
                      .+|..+.. ..|+.|+++.+.+..+|..+ .+..|..++..+|++..+|+++.++.+|..+++.+|+ ++ ..|.  ..-
T Consensus       105 ~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~-~l~~--~~i  180 (565)
T KOG0472|consen  105 ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LK-ALPE--NHI  180 (565)
T ss_pred             hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hh-hCCH--HHH
Confidence            34444444 44555555555544444444 3444444555555555555555555555555554441 11 1111  111


Q ss_pred             CCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhh-CCCCCCEEe
Q 015671          201 RLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIE-SLLRLEYLD  278 (403)
Q Consensus       201 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~  278 (403)
                      +++.|++++...| ..+.+|+.++.+.+|+.|++.. +.+..+|.+.+ ..|.+++++.|.++-+|+... +++++.+||
T Consensus       181 ~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  181 AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence            2444455554442 2444555555555555555554 23334443333 444455555555554444432 445555555


Q ss_pred             cccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          279 LSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       279 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      +.+|+ .++.|..+.-+++|+.||+++|.+ ..+|..++++ .|+.|.+.||.+.
T Consensus       259 LRdNk-lke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  259 LRDNK-LKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             ccccc-cccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchH
Confidence            55544 334444444445555555554332 2233344444 4555555555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.68  E-value=1.4e-16  Score=159.49  Aligned_cols=228  Identities=21%  Similarity=0.299  Sum_probs=176.1

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI  181 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  181 (403)
                      .+...|+++++.+.       .+|..+. .+|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+.  .+|+.|
T Consensus       178 ~~~~~L~L~~~~Lt-------sLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLT-------TIPACIP-EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcC-------cCCcccc-cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEE
Confidence            46788999887763       4443322 679999999999999987653 589999999999999887553  589999


Q ss_pred             ecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccC
Q 015671          182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAI  261 (403)
Q Consensus       182 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  261 (403)
                      ++++| .+. .+|.  .+.  .+|+.|++++|.+. .+|..+  .++|+.|++++|. ++.+|.....+|+.|++++|.+
T Consensus       247 ~Ls~N-~L~-~LP~--~l~--s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~L  316 (754)
T PRK15370        247 ELSIN-RIT-ELPE--RLP--SALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSL  316 (754)
T ss_pred             ECcCC-ccC-cCCh--hHh--CCCCEEECcCCccC-cccccc--CCCCcEEECCCCc-cccCcccchhhHHHHHhcCCcc
Confidence            99998 344 5543  232  57899999988754 677655  3589999999974 4556665557899999999999


Q ss_pred             cccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhc
Q 015671          262 KELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQ  341 (403)
Q Consensus       262 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~  341 (403)
                      +.+|..+  .++|+.|++++|.+. .+|..+  .++|+.|++++|.+. .+|..+  .++|+.|++++|.++.+|..+. 
T Consensus       317 t~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~-  387 (754)
T PRK15370        317 TALPETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP-  387 (754)
T ss_pred             ccCCccc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH-
Confidence            9888654  378999999999855 477655  379999999998765 466554  3689999999999999987664 


Q ss_pred             CCCCCEEeccCCcCCCcCCC
Q 015671          342 HFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       342 ~~~L~~L~l~~c~~l~~lp~  361 (403)
                       +.|+.|++++|... .+|.
T Consensus       388 -~sL~~LdLs~N~L~-~LP~  405 (754)
T PRK15370        388 -AALQIMQASRNNLV-RLPE  405 (754)
T ss_pred             -HHHHHHhhccCCcc-cCch
Confidence             47999999998654 6765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=1e-14  Score=145.53  Aligned_cols=222  Identities=22%  Similarity=0.175  Sum_probs=141.2

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI  181 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  181 (403)
                      .+-..|+++.+.+.       .+|..+. .+|+.|++.+|.++.+|..  +++|++|++++|+++.+|..   .++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-------sLP~~l~-~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-------TLPDCLP-AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-------cCCcchh-cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---cccccee
Confidence            55678999998773       4555443 5899999999999999863  68999999999999999853   4689999


Q ss_pred             ecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccC
Q 015671          182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAI  261 (403)
Q Consensus       182 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  261 (403)
                      ++++| .+. .+|.     ...+|+.|++++|.+ ..+|.   .+++|+.|++++|. +..+|... .+|+.|.+++|.+
T Consensus       268 ~Ls~N-~L~-~Lp~-----lp~~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N~-L~~Lp~lp-~~L~~L~Ls~N~L  334 (788)
T PRK15387        268 SIFSN-PLT-HLPA-----LPSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDNQ-LASLPALP-SELCKLWAYNNQL  334 (788)
T ss_pred             eccCC-chh-hhhh-----chhhcCEEECcCCcc-ccccc---cccccceeECCCCc-cccCCCCc-ccccccccccCcc
Confidence            99998 344 4443     125688999999874 45665   35789999999974 44455422 4566666666666


Q ss_pred             cccChhhhCCCCCCEEecccCcCCCcCCcccc-----------------CCCCCcEEeecCCCCCcccCcccCCCCCCCE
Q 015671          262 KELPSSIESLLRLEYLDLSDCKRLKSLPSSLC-----------------KLKSLGVLNLYGCSNLQRLPECLGQLSSPIT  324 (403)
Q Consensus       262 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----------------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  324 (403)
                      +.+|.   ...+|+.|++++|.+. .+|....                 ...+|+.|++++|.+.+ +|..   .++|+.
T Consensus       335 ~~LP~---lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~  406 (788)
T PRK15387        335 TSLPT---LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKE  406 (788)
T ss_pred             ccccc---cccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCE
Confidence            66553   1245666666666543 2332110                 01245555555544332 3322   245556


Q ss_pred             EEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          325 LGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       325 L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      |++++|.++.+|..   ...|+.|++++|.. +.+|.
T Consensus       407 LdLS~N~LssIP~l---~~~L~~L~Ls~NqL-t~LP~  439 (788)
T PRK15387        407 LMVSGNRLTSLPML---PSGLLSLSVYRNQL-TRLPE  439 (788)
T ss_pred             EEccCCcCCCCCcc---hhhhhhhhhccCcc-cccCh
Confidence            66666666555542   23455566665543 34554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.60  E-value=1.8e-17  Score=161.17  Aligned_cols=217  Identities=25%  Similarity=0.332  Sum_probs=121.4

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671          131 AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN  209 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  209 (403)
                      .+|++++++.+.+..+|.++ .+.+|+.++...|.+..+|..+...++|+.|.+..| .+. .+|.  ....++.|++|+
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~-yip~--~le~~~sL~tLd  316 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELE-YIPP--FLEGLKSLRTLD  316 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhh-hCCC--cccccceeeeee
Confidence            44444444444444444333 344444444444444444444444444444444444 111 2221  222344445555


Q ss_pred             ecCCCCCCccCccC-CCCC-CCCEEeecCCCCCCCCccccc---CCCcEEEecCccCc-ccChhhhCCCCCCEEecccCc
Q 015671          210 LRGSKSLKSLPSEI-FNLE-FLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTAIK-ELPSSIESLLRLEYLDLSDCK  283 (403)
Q Consensus       210 l~~~~~~~~~~~~~-~~l~-~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~  283 (403)
                      +..|. ...+|..+ .-.. +|+.|..+. ..+...|....   ..|+.|++.+|.++ ..-+.+..+.+|+.|++++|.
T Consensus       317 L~~N~-L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  317 LQSNN-LPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             ehhcc-ccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            54443 22333211 1111 133333333 22333332222   56667777777776 222346677888888888887


Q ss_pred             CCCcCCc-cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671          284 RLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       284 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                      + +.+|. .+.++..|+.|+|++|. ...+|+.+..+..|+.|...+|++..+| .+..++.|+.+|++.|...
T Consensus       395 L-~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  395 L-NSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             c-ccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence            4 44444 56778888888888854 5567777888888888888888888888 6788888888888877543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=4.6e-17  Score=128.63  Aligned_cols=167  Identities=23%  Similarity=0.307  Sum_probs=104.5

Q ss_pred             CCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccC
Q 015671          144 KSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEI  223 (403)
Q Consensus       144 ~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  223 (403)
                      ..+|..+.+.+++.|.++.|+++.+|+.+..+.+|+.|++.+| .+. ++|.  .++++++|+.|++..|. ...+|..+
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie-~lp~--~issl~klr~lnvgmnr-l~~lprgf   98 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIE-ELPT--SISSLPKLRILNVGMNR-LNILPRGF   98 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhh-hcCh--hhhhchhhhheecchhh-hhcCcccc
Confidence            3455555666666666666666666666666666666666665 222 3332  45556666666666554 44566666


Q ss_pred             CCCCCCCEEeecCCCCCC-CCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcE
Q 015671          224 FNLEFLTKLDLSGCSKLK-RLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGV  300 (403)
Q Consensus       224 ~~l~~L~~L~l~~~~~~~-~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  300 (403)
                      +.++-|+.|+++.|+.-. .+|..++  ..|+.|++++|.++-+|..++.+++|+.|.+.+|. +-.+|..++.+..|++
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lre  177 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRE  177 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHH
Confidence            666666666666654332 3344333  56666666677777888888888888888888877 3457777777777777


Q ss_pred             EeecCCCCCcccCcccC
Q 015671          301 LNLYGCSNLQRLPECLG  317 (403)
Q Consensus       301 L~l~~~~~~~~~~~~l~  317 (403)
                      |.+.+|.. ..+|+.++
T Consensus       178 lhiqgnrl-~vlppel~  193 (264)
T KOG0617|consen  178 LHIQGNRL-TVLPPELA  193 (264)
T ss_pred             Hhccccee-eecChhhh
Confidence            77777543 34444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.49  E-value=2.9e-15  Score=138.51  Aligned_cols=257  Identities=18%  Similarity=0.133  Sum_probs=141.3

Q ss_pred             hhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCC-------CCC-CCCCceEEEccCCCcc
Q 015671           96 STFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFP-------SNL-SAEKLVLFEVPENDIE  166 (403)
Q Consensus        96 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp-------~~~-~l~~L~~L~l~~~~~~  166 (403)
                      ..|..++.|+.|+++++.+.+.  ....++..+.. +.|+.++++++.+...+       ..+ .+++|++|++++|.+.
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~~--~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~   94 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGEE--AAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG   94 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcHH--HHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence            4456667788888888876421  11233444444 67888888877655322       122 4668888888887775


Q ss_pred             c-cccccccC---CCCcEeecccccCccccCCC-CCCCCCC-CCCcEEEecCCCCCC----ccCccCCCCCCCCEEeecC
Q 015671          167 Q-LWDCVKHY---SKLNQIIHAVCHRLIAKTPN-PTLMPRL-NKVVILNLRGSKSLK----SLPSEIFNLEFLTKLDLSG  236 (403)
Q Consensus       167 ~-l~~~~~~l---~~L~~L~l~~~~~~~~~~~~-~~~~~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~  236 (403)
                      . .+..+..+   ++|++|++++|.......+. ...+..+ ++|+.|++++|.+..    .++..+..+++|++|++++
T Consensus        95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  174 (319)
T cd00116          95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN  174 (319)
T ss_pred             hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence            3 23333333   34888888777321100000 1123444 677888888877653    2333455667788888877


Q ss_pred             CCCCCCC-cccc---c--CCCcEEEecCccCc-----ccChhhhCCCCCCEEecccCcCCCcCCcccc-----CCCCCcE
Q 015671          237 CSKLKRL-PEIS---S--GNISWLFLTGTAIK-----ELPSSIESLLRLEYLDLSDCKRLKSLPSSLC-----KLKSLGV  300 (403)
Q Consensus       237 ~~~~~~~-~~~~---~--~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~  300 (403)
                      |...... +...   .  ++|+.|++++|.++     .++..+..+++|+.|++++|.+.......+.     ..+.|+.
T Consensus       175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~  254 (319)
T cd00116         175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT  254 (319)
T ss_pred             CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence            6543211 1111   1  46677777666654     2233445566777777777664431111111     2356777


Q ss_pred             EeecCCCCCc----ccCcccCCCCCCCEEEccCCCCcc-----cChhhhcC-CCCCEEeccCCc
Q 015671          301 LNLYGCSNLQ----RLPECLGQLSSPITLGLTETNIER-----IPESIIQH-FVLRYLLLSYSE  354 (403)
Q Consensus       301 L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~-----l~~~~~~~-~~L~~L~l~~c~  354 (403)
                      |++++|.+..    .+...+..+++|+.+++++|.++.     +...+... +.|+.|++.+++
T Consensus       255 L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             EEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            7777766541    233344455667777777776662     22233333 566677666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.46  E-value=6e-15  Score=136.38  Aligned_cols=223  Identities=21%  Similarity=0.144  Sum_probs=141.7

Q ss_pred             CCeeEEEecCCCCC-----CCCCCC-CCCCceEEEccCCCccc-------cccccccCCCCcEeecccccCccccCCCCC
Q 015671          131 AEVKYLHWHGYPLK-----SFPSNL-SAEKLVLFEVPENDIEQ-------LWDCVKHYSKLNQIIHAVCHRLIAKTPNPT  197 (403)
Q Consensus       131 ~~L~~L~l~~~~~~-----~lp~~~-~l~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  197 (403)
                      ..|+.|+++++.++     .++... ..+.|++++++++.+..       ++..+..+++|+.|++++|.... ..+.  
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~--   99 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP-DGCG--   99 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh-hHHH--
Confidence            56889999888863     233333 46678888888876652       23456678889999998874321 1111  


Q ss_pred             CCCCC---CCCcEEEecCCCCCC----ccCccCCCC-CCCCEEeecCCCCCCCCc----cccc--CCCcEEEecCccCc-
Q 015671          198 LMPRL---NKVVILNLRGSKSLK----SLPSEIFNL-EFLTKLDLSGCSKLKRLP----EISS--GNISWLFLTGTAIK-  262 (403)
Q Consensus       198 ~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~~~----~~~~--~~L~~L~l~~~~~~-  262 (403)
                      .+..+   ++|++|++++|.+..    .+...+..+ ++|+.|++++|.......    ....  .+|+.|++++|.++ 
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence            11122   558889998887652    222334456 788888888877553211    1111  57888888888776 


Q ss_pred             ----ccChhhhCCCCCCEEecccCcCCCc----CCccccCCCCCcEEeecCCCCCcccCcccC-----CCCCCCEEEccC
Q 015671          263 ----ELPSSIESLLRLEYLDLSDCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQRLPECLG-----QLSSPITLGLTE  329 (403)
Q Consensus       263 ----~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~  329 (403)
                          .++..+...++|+.|++++|.+.+.    ++..+..+++|+.|++++|.+.+.....+.     ..+.|+.|++++
T Consensus       180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~  259 (319)
T cd00116         180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC  259 (319)
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence                2334455567888888888875432    333455677888888888776542221111     246788888888


Q ss_pred             CCCc-----ccChhhhcCCCCCEEeccCCcCC
Q 015671          330 TNIE-----RIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       330 ~~l~-----~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                      |.++     .+...+..++.|+.+++++|...
T Consensus       260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            8875     34445566678888888887544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.44  E-value=1.9e-15  Score=119.55  Aligned_cols=159  Identities=25%  Similarity=0.357  Sum_probs=111.7

Q ss_pred             cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcE
Q 015671          174 HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISW  253 (403)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~  253 (403)
                      .+.+...|.+++|+ ++ .+|.  .+..+.+|+.|++++|. ...+|.+++.+++|+.|++                   
T Consensus        31 ~~s~ITrLtLSHNK-l~-~vpp--nia~l~nlevln~~nnq-ie~lp~~issl~klr~lnv-------------------   86 (264)
T KOG0617|consen   31 NMSNITRLTLSHNK-LT-VVPP--NIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNV-------------------   86 (264)
T ss_pred             chhhhhhhhcccCc-ee-ecCC--cHHHhhhhhhhhcccch-hhhcChhhhhchhhhheec-------------------
Confidence            34444455555542 22 2221  34444455555555443 3444544555555555554                   


Q ss_pred             EEecCccCcccChhhhCCCCCCEEecccCcCCC-cCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCC
Q 015671          254 LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLK-SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNI  332 (403)
Q Consensus       254 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l  332 (403)
                         +-|.+..+|..+++++.|+.|++.+|.+.. .+|..|..+..|+.|++++|. .+.+|..++.+++|+.|.+.+|.+
T Consensus        87 ---gmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen   87 ---GMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             ---chhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch
Confidence               445666788899999999999999988654 577777788899999999854 466777889999999999999999


Q ss_pred             cccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          333 ERIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       333 ~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      -++|..++.+..|++|.|.+|+.. -+|.
T Consensus       163 l~lpkeig~lt~lrelhiqgnrl~-vlpp  190 (264)
T KOG0617|consen  163 LSLPKEIGDLTRLRELHIQGNRLT-VLPP  190 (264)
T ss_pred             hhCcHHHHHHHHHHHHhcccceee-ecCh
Confidence            999999999999999999998644 4554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.41  E-value=2.8e-15  Score=133.27  Aligned_cols=260  Identities=16%  Similarity=0.101  Sum_probs=139.7

Q ss_pred             CCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecC-CCCCCCCCCC--CCCCceEEEc
Q 015671           85 MSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLKSFPSNL--SAEKLVLFEV  160 (403)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~-~~~~~lp~~~--~l~~L~~L~l  160 (403)
                      +.......+.+.+|+.+++||.|+|+.|.|.      ..-|..+.. ..|-.|-+.+ |.++++|...  ++..|+.|.+
T Consensus        74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is------~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNIS------FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             eccCCcccCChhhccchhhhceecccccchh------hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            3344445667888999999999999998874      334455555 5555555555 7788888665  6888888888


Q ss_pred             cCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCC------------ccCccCCCCC
Q 015671          161 PENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLK------------SLPSEIFNLE  227 (403)
Q Consensus       161 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~l~  227 (403)
                      .-|++.-++ +.+..+++|..|.+.+|.. . .++ -..+..+..++.+.+..|.+..            ..|.+++++.
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~-q-~i~-~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKI-Q-SIC-KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhh-h-hhc-cccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            888887664 5788888888888888732 1 222 2356677777777776655221            1122222222


Q ss_pred             CCCEEeecCCCCCCCCccccc-CCCcEE----EecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEE
Q 015671          228 FLTKLDLSGCSKLKRLPEISS-GNISWL----FLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVL  301 (403)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~~~-~~L~~L----~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  301 (403)
                      -..-..+... .+...+.-.+ .+++.+    .-.++-....| ..++.+++|++|++++|+++..-+.+|.....+++|
T Consensus       225 c~~p~rl~~~-Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  225 CVSPYRLYYK-RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             ecchHHHHHH-HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            2221111110 0000000000 000000    00011111112 124555566666666665555555555555566666


Q ss_pred             eecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCc
Q 015671          302 NLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSE  354 (403)
Q Consensus       302 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~  354 (403)
                      .|..|.+...-...|.++..|+.|+|.+|+|+ -.|..+..+.+|.+|++-.|+
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            66555543333334555555666666666655 334444555555555555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.27  E-value=3e-12  Score=130.66  Aligned_cols=224  Identities=24%  Similarity=0.254  Sum_probs=147.0

Q ss_pred             CCCCCcEEEEeccCCCCCCcccccccCC-CCC-CCeeEEEecCCC-CCCCCCCC-CCCCceEEEccCCCccccccccccC
Q 015671          100 KMPKLRFLKFYSSSFNGENKCKMSYLQD-PGF-AEVKYLHWHGYP-LKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHY  175 (403)
Q Consensus       100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~-~~L~~L~l~~~~-~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l  175 (403)
                      ..++|++|-+..|..     .....+.. +.. +.|++|+|++|. +..+|..+ .+-+|++|+++++.+..+|..++++
T Consensus       543 ~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L  617 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL  617 (889)
T ss_pred             CCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence            346799999888751     01233332 344 999999999876 78999999 6999999999999999999999999


Q ss_pred             CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCC--CccCccCCCCCCCCEEeecCCCCCCCCccccc-----
Q 015671          176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSL--KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-----  248 (403)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----  248 (403)
                      .+|.+|++..+..+. .++  .....+++|++|.+......  ...-..+..+.+|+.+.+..... ........     
T Consensus       618 k~L~~Lnl~~~~~l~-~~~--~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~  693 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLE-SIP--GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR  693 (889)
T ss_pred             Hhhheeccccccccc-ccc--chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH
Confidence            999999999886554 332  24455899999998764311  11223345666666666654332 11111111     


Q ss_pred             CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCcccc-----C-CCCCcEEeecCCCCCcccCcccCCCCCC
Q 015671          249 GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLC-----K-LKSLGVLNLYGCSNLQRLPECLGQLSSP  322 (403)
Q Consensus       249 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L  322 (403)
                      ...+.+.+.++.....+..+..+.+|+.|.+.+|........+..     . ++++..+.+.+|.....+ .+.--.++|
T Consensus       694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l-~~~~f~~~L  772 (889)
T KOG4658|consen  694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL-TWLLFAPHL  772 (889)
T ss_pred             HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc-chhhccCcc
Confidence            222334434444456667788999999999999986543322211     1 334555555555544433 334457899


Q ss_pred             CEEEccCCCCc
Q 015671          323 ITLGLTETNIE  333 (403)
Q Consensus       323 ~~L~l~~~~l~  333 (403)
                      +.|.+..|...
T Consensus       773 ~~l~l~~~~~~  783 (889)
T KOG4658|consen  773 TSLSLVSCRLL  783 (889)
T ss_pred             cEEEEeccccc
Confidence            99999998755

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.26  E-value=8.3e-14  Score=123.99  Aligned_cols=249  Identities=17%  Similarity=0.080  Sum_probs=159.0

Q ss_pred             CCcEEEEeccCCCCCCcccccccCCCCC--CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccC-CCcccccc-ccccCC
Q 015671          103 KLRFLKFYSSSFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVPE-NDIEQLWD-CVKHYS  176 (403)
Q Consensus       103 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~~-~~~~~l~~-~~~~l~  176 (403)
                      .-..++|..|.|       ..+|...+.  .+||.|+|+.|.++.| |..| .++.|.+|-+-+ |+|+.+|. .++.+.
T Consensus        68 ~tveirLdqN~I-------~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   68 ETVEIRLDQNQI-------SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             cceEEEeccCCc-------ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            345677888877       355655444  8888888888888877 5555 577776665554 88888874 677788


Q ss_pred             CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCC--c---------
Q 015671          177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRL--P---------  244 (403)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~---------  244 (403)
                      .|+.|.+.-|+- . -++ ...+..+++|..|.+.+|.+ ..++ ..+..+..++++.+..|..+...  |         
T Consensus       141 slqrLllNan~i-~-Cir-~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  141 SLQRLLLNANHI-N-CIR-QDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             HHHHHhcChhhh-c-chh-HHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence            888887766521 1 111 23566778888888888764 3344 36777888888887776533221  0         


Q ss_pred             -cccc--CCCcEEEecCccCcccChh-h-hCCCCCCEEecccCcCCCcCCc-cccCCCCCcEEeecCCCCCcccCcccCC
Q 015671          245 -EISS--GNISWLFLTGTAIKELPSS-I-ESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECLGQ  318 (403)
Q Consensus       245 -~~~~--~~L~~L~l~~~~~~~l~~~-~-~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~  318 (403)
                       ..+.  .-..-..+.+..+..+++. + ..+..+..--.+.|......|. .|..+++|++|++++|.+.+.-+.+|++
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~  296 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG  296 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence             0000  0001111111222222211 1 1111111111122322333333 4788999999999999999888899999


Q ss_pred             CCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCcCCCC
Q 015671          319 LSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQSLPSP  362 (403)
Q Consensus       319 l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~~  362 (403)
                      +..+++|.|..|++..+.. .+..+..|+.|++.+|+++.-.|..
T Consensus       297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a  341 (498)
T KOG4237|consen  297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA  341 (498)
T ss_pred             hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence            9999999999999996654 4678899999999999988777764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=2e-10  Score=109.35  Aligned_cols=172  Identities=27%  Similarity=0.328  Sum_probs=69.4

Q ss_pred             CCCceEEEccCCCccccccccccCC-CCcEeecccccCccccCCCC-CCCCCCCCCcEEEecCCCCCCccCccCCCCCCC
Q 015671          152 AEKLVLFEVPENDIEQLWDCVKHYS-KLNQIIHAVCHRLIAKTPNP-TLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFL  229 (403)
Q Consensus       152 l~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  229 (403)
                      ...+..|++.++.+..++.....+. +|+.|+++++     .+..+ ..+..+++|+.|++++|. ...+|...+..+.|
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-----~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L  188 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-----KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL  188 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhccccccccc-----chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence            3445555555555555544444442 4555555544     22211 233444444444444443 22333322233444


Q ss_pred             CEEeecCCCCCCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCC
Q 015671          230 TKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS  307 (403)
Q Consensus       230 ~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  307 (403)
                      +.|++++| .+..+|....  ..|+++.+++|.+...+..+..+.++..+.+.++.. ..++..++.+++++.|++++|.
T Consensus       189 ~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         189 NNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             hheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccchhccccccceecccccc
Confidence            44444442 1222222211  223333333333333333444444444444444332 2223334444445555555433


Q ss_pred             CCcccCcccCCCCCCCEEEccCCCCc
Q 015671          308 NLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       308 ~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      +...-+  ++.+.+++.|+++++.+.
T Consensus       267 i~~i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         267 ISSISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccccc--ccccCccCEEeccCcccc
Confidence            322211  444445555555554444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=9.5e-12  Score=115.94  Aligned_cols=193  Identities=23%  Similarity=0.349  Sum_probs=127.3

Q ss_pred             CCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCE
Q 015671          152 AEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTK  231 (403)
Q Consensus       152 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  231 (403)
                      +.--...|++.|.+..+|..+..+..|..+.+..|..-  .+|.  .+.++..|++++++.|. ...+|..++.++ |+.
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r--~ip~--~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR--TIPE--AICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKV  147 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce--ecch--hhhhhhHHHHhhhccch-hhcCChhhhcCc-cee
Confidence            33344566777777777777777777777777665321  2332  55666677777777755 455666565543 677


Q ss_pred             EeecCCCCCCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671          232 LDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL  309 (403)
Q Consensus       232 L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  309 (403)
                      |.+++ ++++.+|...+  ..|..|+.+.|.+..+|..++.+.+|+.|.+..|. ...+|..+..+ .|..||++. +.+
T Consensus       148 li~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfSc-Nki  223 (722)
T KOG0532|consen  148 LIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSC-NKI  223 (722)
T ss_pred             EEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeeccc-Cce
Confidence            77766 44555555554  66666777777777788888888888888888776 44566666644 477788875 455


Q ss_pred             cccCcccCCCCCCCEEEccCCCCcccChhh---hcCCCCCEEeccCCc
Q 015671          310 QRLPECLGQLSSPITLGLTETNIERIPESI---IQHFVLRYLLLSYSE  354 (403)
Q Consensus       310 ~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~---~~~~~L~~L~l~~c~  354 (403)
                      ..+|..|..+..|++|-|.+|.+.+-|..+   +...-.++|++.-|+
T Consensus       224 s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  224 SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            667778888888888888888888666554   333345677777773

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=5.6e-10  Score=106.38  Aligned_cols=175  Identities=30%  Similarity=0.395  Sum_probs=128.4

Q ss_pred             CCeeEEEecCCCCCCCCCCCC-CC-CceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCC-CCCCCcE
Q 015671          131 AEVKYLHWHGYPLKSFPSNLS-AE-KLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMP-RLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~-l~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~  207 (403)
                      ..+..|++.++.+.++|.... +. +|++|++++|.+..+|..++.+++|+.|++++|     .+..+.... .++.|+.
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-----~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-----DLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-----hhhhhhhhhhhhhhhhh
Confidence            678888888888888887774 43 888888888888888878888888888888888     333322333 6788888


Q ss_pred             EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCC
Q 015671          208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLK  286 (403)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~  286 (403)
                      |++++|. ...+|........|++|.+++|........... ..+..+.+.++.+..++..++.++.++.|++++|.+. 
T Consensus       191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-  268 (394)
T COG4886         191 LDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-  268 (394)
T ss_pred             eeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-
Confidence            8888876 556666554566688888888754444333333 6777777778877777777888888999998887744 


Q ss_pred             cCCccccCCCCCcEEeecCCCCCcccC
Q 015671          287 SLPSSLCKLKSLGVLNLYGCSNLQRLP  313 (403)
Q Consensus       287 ~~~~~~~~l~~L~~L~l~~~~~~~~~~  313 (403)
                      .++. ++.+.+++.|+++++.+....+
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cccc-ccccCccCEEeccCccccccch
Confidence            3444 7778888999988877665544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=1.8e-10  Score=94.93  Aligned_cols=128  Identities=16%  Similarity=0.232  Sum_probs=50.8

Q ss_pred             cCCCCCcEEEEeccCCCCCCcccccccCCCC-C-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccccc-ccC
Q 015671           99 TKMPKLRFLKFYSSSFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCV-KHY  175 (403)
Q Consensus        99 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~-~~l  175 (403)
                      .+..++|.|++.+|.|.        ....+. . .+|+.|++++|.++.++....+++|++|++++|.++.+.+.+ ..+
T Consensus        16 ~n~~~~~~L~L~~n~I~--------~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l   87 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS--------TIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNL   87 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred             ccccccccccccccccc--------cccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhC
Confidence            34557899999998863        233444 2 789999999999998887668899999999999999886554 468


Q ss_pred             CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCcc---CccCCCCCCCCEEeecC
Q 015671          176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSL---PSEIFNLEFLTKLDLSG  236 (403)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~  236 (403)
                      ++|++|++++| .+. .+..+..+..+++|+.|++.+|.+...-   ...+..+|+|+.||-..
T Consensus        88 p~L~~L~L~~N-~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   88 PNLQELYLSNN-KIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             TT--EEE-TTS-----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCEEECcCC-cCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            99999999988 333 4444555667788888888887654321   12234677888887654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=6.2e-11  Score=107.26  Aligned_cols=222  Identities=17%  Similarity=0.142  Sum_probs=140.0

Q ss_pred             CCCCceEEEccCCCccccc--cccccCCCCcEeecccccCccccC-CCCCCCCCCCCCcEEEecCCCCCCccCccC-CCC
Q 015671          151 SAEKLVLFEVPENDIEQLW--DCVKHYSKLNQIIHAVCHRLIAKT-PNPTLMPRLNKVVILNLRGSKSLKSLPSEI-FNL  226 (403)
Q Consensus       151 ~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l  226 (403)
                      ++++|+.+.|.++.+...+  .....|++++.|+++.| .++ .+ +....+..|++|+.|+++.|.+.....+.. ..+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            5778888888888887665  36778899999999887 232 22 222345567888888888887654333221 256


Q ss_pred             CCCCEEeecCCCCCCCCccc---ccCCCcEEEecCcc-CcccChhhhCCCCCCEEecccCcCCCcC-CccccCCCCCcEE
Q 015671          227 EFLTKLDLSGCSKLKRLPEI---SSGNISWLFLTGTA-IKELPSSIESLLRLEYLDLSDCKRLKSL-PSSLCKLKSLGVL  301 (403)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L  301 (403)
                      ++|+.|.++.|.....--..   .+|+++.|++..|. +..-.....-+..|+.|+|++|.+...- -...+.++.|..|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            78888888887654221111   11788888888773 3222223344567888888887754321 1345678888888


Q ss_pred             eecCCCCCcc-cCcc-----cCCCCCCCEEEccCCCCcccCh--hhhcCCCCCEEeccCCcCCCcCCC-CeEeccCCCCC
Q 015671          302 NLYGCSNLQR-LPEC-----LGQLSSPITLGLTETNIERIPE--SIIQHFVLRYLLLSYSERLQSLPS-PLFLARGCLAM  372 (403)
Q Consensus       302 ~l~~~~~~~~-~~~~-----l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp~-~~l~i~~c~~l  372 (403)
                      .++.|.+... .|+.     ...+++|++|++..|++..++.  .+..+++|+.|.+-.|...+.--. -.+.|..-+++
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l  356 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQL  356 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhh
Confidence            8888766542 3333     3457888888888888875553  356667778887776665433222 24445555555


Q ss_pred             CC
Q 015671          373 QP  374 (403)
Q Consensus       373 ~~  374 (403)
                      ..
T Consensus       357 ~~  358 (505)
T KOG3207|consen  357 VK  358 (505)
T ss_pred             hh
Confidence            54

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.96  E-value=3.5e-11  Score=105.93  Aligned_cols=241  Identities=17%  Similarity=0.154  Sum_probs=133.7

Q ss_pred             hcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCC----CCCCCCC--------CCCCCceEEEccCCC
Q 015671           98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYP----LKSFPSN--------LSAEKLVLFEVPEND  164 (403)
Q Consensus        98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~----~~~lp~~--------~~l~~L~~L~l~~~~  164 (403)
                      ...+..++.+++++|.|+.+.  ...+...+.. ++|+.-++++.-    ...+|..        ...++|++++|++|.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EA--a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEA--ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             hcccCceEEEeccCCchhHHH--HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            445666677777777664221  1222333444 566666665421    1222221        134466666666665


Q ss_pred             cc-----ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCC
Q 015671          165 IE-----QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK  239 (403)
Q Consensus       165 ~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  239 (403)
                      +.     .+...++++..|++|.+.+|. +. .... ..++  ..|..|.         ...-.+.-+.|+++.+.+|..
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg-~~ag-~~l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCG-LG-PEAG-GRLG--RALFELA---------VNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCC-CC-hhHH-HHHH--HHHHHHH---------HHhccCCCcceEEEEeecccc
Confidence            43     122345556666666666662 11 0000 0000  0011111         000122334556666555432


Q ss_pred             CCCCcccc-----c--CCCcEEEecCccCc-----ccChhhhCCCCCCEEecccCcCCCc----CCccccCCCCCcEEee
Q 015671          240 LKRLPEIS-----S--GNISWLFLTGTAIK-----ELPSSIESLLRLEYLDLSDCKRLKS----LPSSLCKLKSLGVLNL  303 (403)
Q Consensus       240 ~~~~~~~~-----~--~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l  303 (403)
                      - ..+...     .  +.|+.+.+..|.|.     -+...+..+++|++|++.+|.++..    +...+..+++|+.|++
T Consensus       170 e-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  170 E-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             c-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            2 211110     0  45666666655553     2334568899999999999987642    3345667889999999


Q ss_pred             cCCCCCccc----Cccc-CCCCCCCEEEccCCCCc-----ccChhhhcCCCCCEEeccCCcC
Q 015671          304 YGCSNLQRL----PECL-GQLSSPITLGLTETNIE-----RIPESIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       304 ~~~~~~~~~----~~~l-~~l~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~  355 (403)
                      ++|.+...-    .+++ ...++|+.|.+.+|.++     .+..++...|.|..|++++|..
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            999875432    2233 45889999999999988     2334556689999999999965

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=2.4e-10  Score=98.78  Aligned_cols=128  Identities=27%  Similarity=0.262  Sum_probs=96.7

Q ss_pred             CCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEE
Q 015671          224 FNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVL  301 (403)
Q Consensus       224 ~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  301 (403)
                      .....|+++++++|. ++.+.....  +.++.|+++.|.+..+.. +..+++|+.|++++|. +..+..+-..+.++++|
T Consensus       281 dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  281 DTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL  357 (490)
T ss_pred             chHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence            345678888888854 444444333  888899999998887765 7889999999999987 44455555678889999


Q ss_pred             eecCCCCCcccCcccCCCCCCCEEEccCCCCcccC--hhhhcCCCCCEEeccCCcCC
Q 015671          302 NLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP--ESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       302 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~c~~l  356 (403)
                      .+++|.+.. + ..+..+-+|..|++++|+|..+.  ..++++|+|+.+.+.+|+..
T Consensus       358 ~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  358 KLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             ehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            999865433 2 24667778999999999998543  46899999999999999854

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=8.9e-11  Score=106.29  Aligned_cols=201  Identities=12%  Similarity=0.049  Sum_probs=146.9

Q ss_pred             CCeeEEEecCCCCCCCCC--CC-CCCCceEEEccCCCcccc---ccccccCCCCcEeecccccCccccCCCCCCCCCCCC
Q 015671          131 AEVKYLHWHGYPLKSFPS--NL-SAEKLVLFEVPENDIEQL---WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK  204 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~--~~-~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  204 (403)
                      .+|+.+.|..+++...+.  .. .+++++.|||+.|-+..+   ...+..+++|+.|+++.|+... -+.. ..-..++.
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-~~~s-~~~~~l~~  198 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-FISS-NTTLLLSH  198 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-Cccc-cchhhhhh
Confidence            789999999999887763  33 699999999999977653   4567889999999999985332 1111 11225688


Q ss_pred             CcEEEecCCCCCC-ccCccCCCCCCCCEEeecCCCCCCC--CcccccCCCcEEEecCccCcccC--hhhhCCCCCCEEec
Q 015671          205 VVILNLRGSKSLK-SLPSEIFNLEFLTKLDLSGCSKLKR--LPEISSGNISWLFLTGTAIKELP--SSIESLLRLEYLDL  279 (403)
Q Consensus       205 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l  279 (403)
                      |+.|.++.|.+.. .+-..+..+|+|+.|++..|..+..  .+.-....|++|+|++|.+-.++  ...+.++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            9999999998763 2333455789999999999853322  22222288999999999888766  56689999999999


Q ss_pred             ccCcCCCc-CCcc-----ccCCCCCcEEeecCCCCCcc-cCcccCCCCCCCEEEccCCCCc
Q 015671          280 SDCKRLKS-LPSS-----LCKLKSLGVLNLYGCSNLQR-LPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       280 ~~~~~~~~-~~~~-----~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      +.|.+... .|+.     ...+++|+.|++..|++.+. .-..+..+++|+.|.+..+.+.
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            99886542 3332     34678999999999987432 1234556778888888787776

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=1.2e-09  Score=90.13  Aligned_cols=133  Identities=22%  Similarity=0.225  Sum_probs=33.9

Q ss_pred             CCCCCCCCCCCCceEEEccCCCccccccccc-cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCc
Q 015671          143 LKSFPSNLSAEKLVLFEVPENDIEQLWDCVK-HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPS  221 (403)
Q Consensus       143 ~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  221 (403)
                      ++..|...+..++++|+|.++.|+.+. .++ .+.+|+.|++++|     .+..++.+..++.|++|++++|.+.. +.+
T Consensus         9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-----~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~   81 (175)
T PF14580_consen    9 IEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-----QITKLEGLPGLPRLKTLDLSNNRISS-ISE   81 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TTS-------S--TT----TT--EEE--SS---S--CH
T ss_pred             ccccccccccccccccccccccccccc-chhhhhcCCCEEECCCC-----CCccccCccChhhhhhcccCCCCCCc-ccc
Confidence            334444444445566666666655553 222 4556666666666     34444455556666666666655332 222


Q ss_pred             cC-CCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccC--hhhhCCCCCCEEecccCcCCCcCC---ccccCC
Q 015671          222 EI-FNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELP--SSIESLLRLEYLDLSDCKRLKSLP---SSLCKL  295 (403)
Q Consensus       222 ~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l  295 (403)
                      .+ ..+++|++|++++|.                      +.++.  ..+..+++|+.|++.+|+....--   ..+..+
T Consensus        82 ~l~~~lp~L~~L~L~~N~----------------------I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l  139 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNK----------------------ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL  139 (175)
T ss_dssp             HHHHH-TT--EEE-TTS-------------------------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred             chHHhCCcCCEEECcCCc----------------------CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence            22 235566666665533                      22111  234456666666666666543211   123456


Q ss_pred             CCCcEEeec
Q 015671          296 KSLGVLNLY  304 (403)
Q Consensus       296 ~~L~~L~l~  304 (403)
                      |+|+.||-.
T Consensus       140 P~Lk~LD~~  148 (175)
T PF14580_consen  140 PSLKVLDGQ  148 (175)
T ss_dssp             TT-SEETTE
T ss_pred             ChhheeCCE
Confidence            666666643

>PLN03150 hypothetical protein; Provisional

Probab=98.87  E-value=6.3e-09  Score=104.12  Aligned_cols=111  Identities=28%  Similarity=0.366  Sum_probs=95.6

Q ss_pred             CcEEEecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccC
Q 015671          251 ISWLFLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE  329 (403)
Q Consensus       251 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  329 (403)
                      ++.|+++++.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+.+.+|+.+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            677888888887 7788889999999999999998889998899999999999999999999999999999999999999


Q ss_pred             CCCc-ccChhhhcC-CCCCEEeccCCcCCCcCCC
Q 015671          330 TNIE-RIPESIIQH-FVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       330 ~~l~-~l~~~~~~~-~~L~~L~l~~c~~l~~lp~  361 (403)
                      |.++ .+|..+... ..+..+++.+|+.+...|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            9988 788877653 4677888998887776664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.84  E-value=6.7e-11  Score=110.41  Aligned_cols=151  Identities=19%  Similarity=0.249  Sum_probs=77.5

Q ss_pred             hcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCC
Q 015671           98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYS  176 (403)
Q Consensus        98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  176 (403)
                      +..+..|..+.++.|.+       ..+|..+.. ..|.+|+|+.|++..+|..++.--|+.|-+++|+++.+|..++.++
T Consensus        94 ~~~f~~Le~liLy~n~~-------r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~  166 (722)
T KOG0532|consen   94 ACAFVSLESLILYHNCI-------RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLP  166 (722)
T ss_pred             HHHHHHHHHHHHHhccc-------eecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccch
Confidence            33334444444554433       344555555 5555555555555555555544445555555555555555555555


Q ss_pred             CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEe
Q 015671          177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL  256 (403)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  256 (403)
                      +|..|+.+.|. +. .+  ++.++.+.+|+.|.+..|. ...+|+.++                       ...|..|++
T Consensus       167 tl~~ld~s~ne-i~-sl--psql~~l~slr~l~vrRn~-l~~lp~El~-----------------------~LpLi~lDf  218 (722)
T KOG0532|consen  167 TLAHLDVSKNE-IQ-SL--PSQLGYLTSLRDLNVRRNH-LEDLPEELC-----------------------SLPLIRLDF  218 (722)
T ss_pred             hHHHhhhhhhh-hh-hc--hHHhhhHHHHHHHHHhhhh-hhhCCHHHh-----------------------CCceeeeec
Confidence            55555555552 11 11  2234444444555444433 233343333                       244555555


Q ss_pred             cCccCcccChhhhCCCCCCEEecccCc
Q 015671          257 TGTAIKELPSSIESLLRLEYLDLSDCK  283 (403)
Q Consensus       257 ~~~~~~~l~~~~~~l~~L~~L~l~~~~  283 (403)
                      ++|++..+|..+.+|..|++|-|.+|.
T Consensus       219 ScNkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  219 SCNKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             ccCceeecchhhhhhhhheeeeeccCC
Confidence            556666666666666666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.76  E-value=2.3e-09  Score=92.81  Aligned_cols=131  Identities=22%  Similarity=0.176  Sum_probs=99.3

Q ss_pred             CCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEeccc
Q 015671          203 NKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSD  281 (403)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  281 (403)
                      ..|+++++++|. +..+.+++.-.|.++.|+++.|... ....+.. ++|..|++++|.++++..+-.++.++++|.+++
T Consensus       284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhhccccccc-hhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            567888888876 4556666777888999999986543 3344444 889999999998888877777888999999998


Q ss_pred             CcCCCcCCccccCCCCCcEEeecCCCCCcc-cCcccCCCCCCCEEEccCCCCcccCh
Q 015671          282 CKRLKSLPSSLCKLKSLGVLNLYGCSNLQR-LPECLGQLSSPITLGLTETNIERIPE  337 (403)
Q Consensus       282 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~l~~  337 (403)
                      |.+- . .++++.+-+|..||+++|++... -...++++|.|+.+.+.+|.+..++.
T Consensus       362 N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  362 NKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            8632 2 24577788899999999876542 22457889999999999999886654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.71  E-value=1.8e-09  Score=95.37  Aligned_cols=204  Identities=16%  Similarity=0.124  Sum_probs=128.0

Q ss_pred             CCCCceEEEccCCCcc-----ccccccccCCCCcEeecccccCcccc----CCC-----CCCCCCCCCCcEEEecCCCCC
Q 015671          151 SAEKLVLFEVPENDIE-----QLWDCVKHYSKLNQIIHAVCHRLIAK----TPN-----PTLMPRLNKVVILNLRGSKSL  216 (403)
Q Consensus       151 ~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~-----~~~~~~l~~L~~L~l~~~~~~  216 (403)
                      .+..++++++++|.+.     .+.+.+.+.++|+..++++-  ++|.    +|.     ...+..+++|++++|++|-+.
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            4555666666666553     23345555566666666542  1111    111     012334456777777776654


Q ss_pred             CccCcc----CCCCCCCCEEeecCCCCCCCCc--------------cccc-CCCcEEEecCccCcccC-----hhhhCCC
Q 015671          217 KSLPSE----IFNLEFLTKLDLSGCSKLKRLP--------------EISS-GNISWLFLTGTAIKELP-----SSIESLL  272 (403)
Q Consensus       217 ~~~~~~----~~~l~~L~~L~l~~~~~~~~~~--------------~~~~-~~L~~L~l~~~~~~~l~-----~~~~~l~  272 (403)
                      ...++.    +..+++|++|.+.+|..-..--              .... +.|+.+....|.+...+     ..+...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            443322    2346677777776654221100              0011 78999999999887544     3457778


Q ss_pred             CCCEEecccCcCCCc----CCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc-----ccChhh
Q 015671          273 RLEYLDLSDCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE-----RIPESI  339 (403)
Q Consensus       273 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~-----~l~~~~  339 (403)
                      .|+.+.+..|.+...    +...+..+++|++|+|.+|.+...    +...+..+++|+.|.+.+|.++     .+...+
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            999999998875432    223567899999999999887543    4456677889999999999887     222222


Q ss_pred             -hcCCCCCEEeccCCcCC
Q 015671          340 -IQHFVLRYLLLSYSERL  356 (403)
Q Consensus       340 -~~~~~L~~L~l~~c~~l  356 (403)
                       ...|+|+.|.+.+|...
T Consensus       266 ~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEIT  283 (382)
T ss_pred             hccCCCCceeccCcchhH
Confidence             45799999999999764

>PLN03150 hypothetical protein; Provisional

Probab=98.61  E-value=7.1e-08  Score=96.65  Aligned_cols=90  Identities=29%  Similarity=0.355  Sum_probs=85.0

Q ss_pred             CCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEecc
Q 015671          273 RLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLS  351 (403)
Q Consensus       273 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~  351 (403)
                      .++.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.++ .+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3788999999999999999999999999999999999999999999999999999999999 899999999999999999


Q ss_pred             CCcCCCcCCCC
Q 015671          352 YSERLQSLPSP  362 (403)
Q Consensus       352 ~c~~l~~lp~~  362 (403)
                      +|...+.+|..
T Consensus       499 ~N~l~g~iP~~  509 (623)
T PLN03150        499 GNSLSGRVPAA  509 (623)
T ss_pred             CCcccccCChH
Confidence            99999999973

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.56  E-value=8.6e-09  Score=98.58  Aligned_cols=125  Identities=16%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             CCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCC-CCCCCCceEEEccCCCccccccccccCCC
Q 015671          100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPS-NLSAEKLVLFEVPENDIEQLWDCVKHYSK  177 (403)
Q Consensus       100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~-~~~l~~L~~L~l~~~~~~~l~~~~~~l~~  177 (403)
                      .+..++.+.+..|.+.       .....+.. .+|..|++.+|.+..+.. .-.+.+|++|++++|.|..+ ..+..++.
T Consensus        70 ~l~~l~~l~l~~n~i~-------~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~  141 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-------KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTL  141 (414)
T ss_pred             HhHhHHhhccchhhhh-------hhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccc
Confidence            3444555555555441       22223444 677777777777776666 33577777777777777766 34455666


Q ss_pred             CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCC
Q 015671          178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCS  238 (403)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~  238 (403)
                      |+.|++++|     .+..+..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.
T Consensus       142 L~~L~l~~N-----~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  142 LKELNLSGN-----LISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS  197 (414)
T ss_pred             hhhheeccC-----cchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence            777777777     45555556667777777777766433222 1 3456666666666643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.52  E-value=9.7e-08  Score=64.58  Aligned_cols=56  Identities=30%  Similarity=0.370  Sum_probs=23.0

Q ss_pred             CcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCC
Q 015671          298 LGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYS  353 (403)
Q Consensus       298 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c  353 (403)
                      |++|++++|.+....+.+|.++++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3444444443332222334444444444444444443322 3344444444444444

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2e-09  Score=93.04  Aligned_cols=175  Identities=21%  Similarity=0.169  Sum_probs=102.8

Q ss_pred             CCceEEEccCCCcc--ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC--ccCCCCCC
Q 015671          153 EKLVLFEVPENDIE--QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP--SEIFNLEF  228 (403)
Q Consensus       153 ~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~  228 (403)
                      ..|++|||+...++  .+-..++.+.+|+.|.+.++..-. .+  ...+.+=.+|+.|+++.|....+..  -.+..++.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I--~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PI--VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HH--HHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            34888888888776  344567788888888888873211 12  2245555778888888876554432  23457888


Q ss_pred             CCEEeecCCCCCCCCcc----cccCCCcEEEecCccC----cccChhhhCCCCCCEEecccCcCCCc-CCccccCCCCCc
Q 015671          229 LTKLDLSGCSKLKRLPE----ISSGNISWLFLTGTAI----KELPSSIESLLRLEYLDLSDCKRLKS-LPSSLCKLKSLG  299 (403)
Q Consensus       229 L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~----~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~  299 (403)
                      |..|++++|......-.    ...+.|+.|+++|+.-    ..+..-...+++|..||+++|...+. ....+.+++.|+
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            88888888865443311    1126677777776432    12222335667777777777654332 122345666777


Q ss_pred             EEeecCCCCCcc-cCcccCCCCCCCEEEccCC
Q 015671          300 VLNLYGCSNLQR-LPECLGQLSSPITLGLTET  330 (403)
Q Consensus       300 ~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~  330 (403)
                      .|.++.|..+.- .--.+...++|.+|++.++
T Consensus       342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            777777653321 1112445566666665554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.47  E-value=1.5e-08  Score=96.87  Aligned_cols=194  Identities=23%  Similarity=0.224  Sum_probs=130.5

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671          131 AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN  209 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  209 (403)
                      ..++.+++..+.+..+-... .+.+|..|++.+|.+..+...+..+++|++|++++|     .|..+..+..++.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-----~I~~i~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-----KITKLEGLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-----ccccccchhhccchhhhe
Confidence            55666667777777644433 789999999999999998776889999999999999     666677788888899999


Q ss_pred             ecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcc--cccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCc
Q 015671          210 LRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE--ISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKS  287 (403)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~  287 (403)
                      +.+|.+. .+. .+..+++|+.+++++|.....-+.  .....++.+.+.+|.+..+. .+..+..+..+++..|.+...
T Consensus       147 l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  147 LSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             eccCcch-hcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceec
Confidence            9998743 333 255689999999999765443331  22378888888888876543 233333444445555554332


Q ss_pred             CCccccCCCC--CcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc
Q 015671          288 LPSSLCKLKS--LGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI  335 (403)
Q Consensus       288 ~~~~~~~l~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l  335 (403)
                      -+  +..+..  |+.++++++++... +..+..+..+..|++.++.+..+
T Consensus       224 ~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  224 EG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             cC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc
Confidence            11  112222  67777777655432 23455667777777777666533

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.41  E-value=2.9e-07  Score=62.24  Aligned_cols=61  Identities=30%  Similarity=0.360  Sum_probs=53.8

Q ss_pred             CCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCC
Q 015671          272 LRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNI  332 (403)
Q Consensus       272 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l  332 (403)
                      |+|++|++++|.+....+..+..+++|+.|++++|.+....+..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999986655556788999999999999998877778999999999999999975

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=3.6e-09  Score=91.53  Aligned_cols=176  Identities=18%  Similarity=0.117  Sum_probs=107.8

Q ss_pred             CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccc--c--CCC
Q 015671          176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS--S--GNI  251 (403)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~--~~L  251 (403)
                      ..|++|+++.. .++ .-.-...+..+.+|+.|.+.++.....+...++.-.+|+.|+++.|+.++....-.  .  ..|
T Consensus       185 sRlq~lDLS~s-~it-~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNS-VIT-VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchh-hee-HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            35788888775 111 00111234567888888888887777776667777888889888887766533211  1  677


Q ss_pred             cEEEecCccCc--ccChhhhC-CCCCCEEecccCcCC---CcCCccccCCCCCcEEeecCCCCCc-ccCcccCCCCCCCE
Q 015671          252 SWLFLTGTAIK--ELPSSIES-LLRLEYLDLSDCKRL---KSLPSSLCKLKSLGVLNLYGCSNLQ-RLPECLGQLSSPIT  324 (403)
Q Consensus       252 ~~L~l~~~~~~--~l~~~~~~-l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~  324 (403)
                      .+|++++|...  .+...+.+ -++|+.|+++|+..-   ..+..-...+|+|..|||++|.... ..-.++-.++.|++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            77778776654  22222222 357777777776421   1122223467788888888775443 23345566777888


Q ss_pred             EEccCCCCc--ccChhhhcCCCCCEEeccCC
Q 015671          325 LGLTETNIE--RIPESIIQHFVLRYLLLSYS  353 (403)
Q Consensus       325 L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c  353 (403)
                      |.++.|..-  ..--.+...|+|.+|++.+|
T Consensus       343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            888777533  22223566777888887776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=1.5e-07  Score=81.73  Aligned_cols=221  Identities=15%  Similarity=0.100  Sum_probs=140.0

Q ss_pred             EEEecCCCCCCCCCCC----CCCCceEEEccCCCccc---cccccccCCCCcEeecccccCccccCCCCCCCC-CCCCCc
Q 015671          135 YLHWHGYPLKSFPSNL----SAEKLVLFEVPENDIEQ---LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMP-RLNKVV  206 (403)
Q Consensus       135 ~L~l~~~~~~~lp~~~----~l~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~  206 (403)
                      .|.+.++.+.+.....    ...+++.+||.+|.++.   +...+.+++.|+.|+++.|...    +.+..++ .+.+|+
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~----s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS----SDIKSLPLPLKNLR  124 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC----CccccCcccccceE
Confidence            4555566555544332    46788889999988875   4456778999999999988322    2223332 456788


Q ss_pred             EEEecCCCCCC-ccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCC
Q 015671          207 ILNLRGSKSLK-SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRL  285 (403)
Q Consensus       207 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  285 (403)
                      .|-+.+..... ...+.+..+|.++.|.++.|            +++.+++..+.++.+.      +.+.+|+...|...
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N------------~~rq~n~Dd~c~e~~s------~~v~tlh~~~c~~~  186 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN------------SLRQLNLDDNCIEDWS------TEVLTLHQLPCLEQ  186 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccc------------hhhhhccccccccccc------hhhhhhhcCCcHHH
Confidence            88887754332 23344567788888888875            3555566665555433      23344444444321


Q ss_pred             Cc--CCccccCCCCCcEEeecCCCCCc-ccCcccCCCCCCCEEEccCCCCcccCh--hhhcCCCCCEEeccCCcCCCcCC
Q 015671          286 KS--LPSSLCKLKSLGVLNLYGCSNLQ-RLPECLGQLSSPITLGLTETNIERIPE--SIIQHFVLRYLLLSYSERLQSLP  360 (403)
Q Consensus       286 ~~--~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp  360 (403)
                      .-  .-.....+|++..+.+..|++-. +-......++.+..|.|..++|.++..  .+..++.|..|.+++++....+-
T Consensus       187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            10  00011235777778887776543 233456678888889999998885543  56788999999999999887776


Q ss_pred             CC---eEeccCCCCCCCchh
Q 015671          361 SP---LFLARGCLAMQPFLG  377 (403)
Q Consensus       361 ~~---~l~i~~c~~l~~~~~  377 (403)
                      ..   .+-|...++++.+..
T Consensus       267 ~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  267 GGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             CCcceEEEEeeccceEEecC
Confidence            63   666777888777443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.05  E-value=2.4e-05  Score=72.81  Aligned_cols=139  Identities=24%  Similarity=0.383  Sum_probs=87.5

Q ss_pred             cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCC
Q 015671          172 VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNI  251 (403)
Q Consensus       172 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L  251 (403)
                      +..+.+++.|++++| .++ .+|.   +.  .+|++|.+.+|.....+|..+  .++|+.|.+++|..+..+|    .+|
T Consensus        48 ~~~~~~l~~L~Is~c-~L~-sLP~---LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIE-SLPV---LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCc-ccCC---CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----ccc
Confidence            455788999999998 555 4542   22  468999999887777777644  3689999999987666555    568


Q ss_pred             cEEEecCccCcccChhhhCCCCCCEEecccCcCC--CcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccC
Q 015671          252 SWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRL--KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE  329 (403)
Q Consensus       252 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  329 (403)
                      +.|.+.++....++.   -.++|+.|.+.++...  ..+|..  -.++|+.|++++|.... +|+.+  ..+|+.|.++.
T Consensus       115 e~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~  186 (426)
T PRK15386        115 RSLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHI  186 (426)
T ss_pred             ceEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Ccccc--cccCcEEEecc
Confidence            888887655432221   1134566666443211  111211  12578889988887543 33322  25788888876


Q ss_pred             CC
Q 015671          330 TN  331 (403)
Q Consensus       330 ~~  331 (403)
                      +.
T Consensus       187 n~  188 (426)
T PRK15386        187 EQ  188 (426)
T ss_pred             cc
Confidence            63

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.05  E-value=1.8e-05  Score=73.54  Aligned_cols=155  Identities=20%  Similarity=0.291  Sum_probs=101.9

Q ss_pred             CCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCc-cCcccChhhhCCCCCCEEe
Q 015671          200 PRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGT-AIKELPSSIESLLRLEYLD  278 (403)
Q Consensus       200 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~  278 (403)
                      ..+.+++.|++++|. ...+|.   -.++|+.|.+++|..+..+|.....+|+.|.+++| .+..+|      +.|+.|+
T Consensus        49 ~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP------~sLe~L~  118 (426)
T PRK15386         49 EEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP------ESVRSLE  118 (426)
T ss_pred             HHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc------cccceEE
Confidence            345788999999984 566663   23479999999999888888766689999999987 666665      3577777


Q ss_pred             cccCcC--CCcCCccccCCCCCcEEeecCCCCC--cccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCc
Q 015671          279 LSDCKR--LKSLPSSLCKLKSLGVLNLYGCSNL--QRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSE  354 (403)
Q Consensus       279 l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~  354 (403)
                      +..+..  .+.+|      ++|+.|.+.+++..  ..+|..  --++|+.|.+++|....+|..+.  .+|+.|+++.|.
T Consensus       119 L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        119 IKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             eCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence            765432  23333      35677777543311  111111  12579999999998776665443  589999998763


Q ss_pred             ------CCCcCCCC-eEeccCCCCCCC
Q 015671          355 ------RLQSLPSP-LFLARGCLAMQP  374 (403)
Q Consensus       355 ------~l~~lp~~-~l~i~~c~~l~~  374 (403)
                            ....+|.. .+.+.+|-.+..
T Consensus       189 ~~sLeI~~~sLP~nl~L~f~n~lkL~~  215 (426)
T PRK15386        189 KTTWNISFEGFPDGLDIDLQNSVLLSP  215 (426)
T ss_pred             cccccCcccccccccEechhhhcccCH
Confidence                  22355553 566666655443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.01  E-value=1.5e-07  Score=85.37  Aligned_cols=273  Identities=16%  Similarity=0.144  Sum_probs=156.7

Q ss_pred             hhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCC-CCCCC--CCC-CCCCceEEEccCCC-ccc--
Q 015671           96 STFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYP-LKSFP--SNL-SAEKLVLFEVPEND-IEQ--  167 (403)
Q Consensus        96 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~-~~~lp--~~~-~l~~L~~L~l~~~~-~~~--  167 (403)
                      ..-..+|++..|.++++...    +...+...-.+ ..|++|++..|. ++...  ... .+++|.+|+++.+. +++  
T Consensus       158 t~~~~CpnIehL~l~gc~~i----Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g  233 (483)
T KOG4341|consen  158 TFASNCPNIEHLALYGCKKI----TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG  233 (483)
T ss_pred             HHhhhCCchhhhhhhcceec----cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence            34456888888888887532    11222222223 778888887754 33221  111 46778888887763 332  


Q ss_pred             cccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC--ccCCCCCCCCEEeecCCCCCCCCcc
Q 015671          168 LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP--SEIFNLEFLTKLDLSGCSKLKRLPE  245 (403)
Q Consensus       168 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~  245 (403)
                      +-.....+..++.+...+|.... .-.-...-..+..+..+++..|..+....  ..-..+..|+.|..++|..++..+-
T Consensus       234 v~~~~rG~~~l~~~~~kGC~e~~-le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l  312 (483)
T KOG4341|consen  234 VQALQRGCKELEKLSLKGCLELE-LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL  312 (483)
T ss_pred             chHHhccchhhhhhhhccccccc-HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH
Confidence            33344555667777666664322 00000111223444555554553332211  1112466777777777766554433


Q ss_pred             ccc----CCCcEEEecCcc-Ccc--cChhhhCCCCCCEEecccCcCCCc--CCccccCCCCCcEEeecCCCCCccc----
Q 015671          246 ISS----GNISWLFLTGTA-IKE--LPSSIESLLRLEYLDLSDCKRLKS--LPSSLCKLKSLGVLNLYGCSNLQRL----  312 (403)
Q Consensus       246 ~~~----~~L~~L~l~~~~-~~~--l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~----  312 (403)
                      ...    .+|+.+.+..+. ++.  +...-..++.|+.+++.+|.....  +...-.+++.|+++.+++|......    
T Consensus       313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~  392 (483)
T KOG4341|consen  313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH  392 (483)
T ss_pred             HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh
Confidence            222    667777776543 331  122235678899999988765432  3333457889999999998765432    


Q ss_pred             -CcccCCCCCCCEEEccCCCCc--ccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCC
Q 015671          313 -PECLGQLSSPITLGLTETNIE--RIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQP  374 (403)
Q Consensus       313 -~~~l~~l~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~  374 (403)
                       ...-.++..|..+.++++...  .....+..+++|+.+++-+|+....-|-. -....||+++.
T Consensus       393 l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~-~~~~~lp~i~v  456 (483)
T KOG4341|consen  393 LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS-RFATHLPNIKV  456 (483)
T ss_pred             hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH-HHHhhCcccee
Confidence             233456778999999999766  55566788899999999999754433321 11356666665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=1.2e-06  Score=87.99  Aligned_cols=104  Identities=16%  Similarity=0.236  Sum_probs=78.2

Q ss_pred             CCeeEEEecCCC--CCCCCCCC--CCCCceEEEccCCCcc--ccccccccCCCCcEeecccccCccccCCCCCCCCCCCC
Q 015671          131 AEVKYLHWHGYP--LKSFPSNL--SAEKLVLFEVPENDIE--QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK  204 (403)
Q Consensus       131 ~~L~~L~l~~~~--~~~lp~~~--~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  204 (403)
                      .+|++|+++|..  ...+|..+  .+|.|+.|.+++-.+.  ++.....++++|..||++++     .++++.++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-----nI~nl~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-----NISNLSGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-----CccCcHHHhcccc
Confidence            789999998855  23444444  4899999999987664  35567788999999999998     6777788999999


Q ss_pred             CcEEEecCCCCCCc-cCccCCCCCCCCEEeecCCCC
Q 015671          205 VVILNLRGSKSLKS-LPSEIFNLEFLTKLDLSGCSK  239 (403)
Q Consensus       205 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~  239 (403)
                      |+.|.+.+-.+... --..+.++++|+.||+|....
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            99998887443321 112366899999999997443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.95  E-value=7.8e-08  Score=92.78  Aligned_cols=102  Identities=22%  Similarity=0.168  Sum_probs=59.1

Q ss_pred             CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccc-cCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671          249 GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSL-CKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL  327 (403)
Q Consensus       249 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  327 (403)
                      +.++.|+++.|++++.. .+..+++|++|||++|. +..+|..- ..+ .|+.|.+++|......  .++++.+|+.||+
T Consensus       187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL~--gie~LksL~~LDl  261 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTLR--GIENLKSLYGLDL  261 (1096)
T ss_pred             HHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhhh--hHHhhhhhhccch
Confidence            55666666666666554 45667777777777765 33333311 122 3677777765543322  3556777777777


Q ss_pred             cCCCCcccC--hhhhcCCCCCEEeccCCcC
Q 015671          328 TETNIERIP--ESIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       328 ~~~~l~~l~--~~~~~~~~L~~L~l~~c~~  355 (403)
                      ++|-+....  ..++.+..|+.|++.||+.
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            777666322  1345566677777777753

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.88  E-value=1.4e-06  Score=84.32  Aligned_cols=173  Identities=20%  Similarity=0.146  Sum_probs=112.7

Q ss_pred             cCCCCcEeecccccCccccCCC-CCCCCCCCCCcEEEecCCCCCCccCccCCCC-CCCCEEeecCCC---------CCCC
Q 015671          174 HYSKLNQIIHAVCHRLIAKTPN-PTLMPRLNKVVILNLRGSKSLKSLPSEIFNL-EFLTKLDLSGCS---------KLKR  242 (403)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~---------~~~~  242 (403)
                      -+++++.|.+-....   .-|. +-.+..+.+|++|.+.+|.+..  ..++..+ ..|++|...+..         -.+.
T Consensus        82 ~lqkt~~lkl~~~pa---~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd  156 (1096)
T KOG1859|consen   82 FLQKTKVLKLLPSPA---RDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGD  156 (1096)
T ss_pred             HHhhheeeeecccCC---CCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccc
Confidence            355555555543321   2221 2345567888999999987433  1112122 245555443210         0111


Q ss_pred             Cccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCc-ccCCCC
Q 015671          243 LPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE-CLGQLS  320 (403)
Q Consensus       243 ~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~  320 (403)
                      +..... ..|...++++|.+..+..++.-++.|+.|+++.|++...-  .+..++.|+.|||++|.+.. +|. ...++.
T Consensus       157 ~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~  233 (1096)
T KOG1859|consen  157 ISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK  233 (1096)
T ss_pred             cccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh
Confidence            111111 4566677788888888888899999999999999865432  57789999999999976543 332 222344


Q ss_pred             CCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671          321 SPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       321 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                       |+.|.+++|.++.+. .+.++.+|+.||+++|-+.
T Consensus       234 -L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  234 -LQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             -heeeeecccHHHhhh-hHHhhhhhhccchhHhhhh
Confidence             999999999999887 5789999999999999543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.6e-05  Score=49.34  Aligned_cols=33  Identities=15%  Similarity=0.175  Sum_probs=19.7

Q ss_pred             CceEEEccCCCccccccccccCCCCcEeecccc
Q 015671          154 KLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVC  186 (403)
Q Consensus       154 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~  186 (403)
                      +|++|++++|+++.+|..+++|++|+.|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            456666666666666555666666666666666

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.81  E-value=1.2e-05  Score=69.32  Aligned_cols=201  Identities=14%  Similarity=0.111  Sum_probs=95.8

Q ss_pred             CCCceEEEccCCCcc-----ccccccccCCCCcEeecccccCcccc----CCC-----CCCCCCCCCCcEEEecCCCCCC
Q 015671          152 AEKLVLFEVPENDIE-----QLWDCVKHYSKLNQIIHAVCHRLIAK----TPN-----PTLMPRLNKVVILNLRGSKSLK  217 (403)
Q Consensus       152 l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~-----~~~~~~l~~L~~L~l~~~~~~~  217 (403)
                      +..+..++|++|.|.     .+...+.+-.+|+..++++-  .+|.    ++.     ...+-+||.|+..++++|.+..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            445555666665543     23344444555555555442  1111    110     1234455666666666665555


Q ss_pred             ccCccC----CCCCCCCEEeecCCCCCCCCc--------------cccc-CCCcEEEecCccCcccChh-----hhCCCC
Q 015671          218 SLPSEI----FNLEFLTKLDLSGCSKLKRLP--------------EISS-GNISWLFLTGTAIKELPSS-----IESLLR  273 (403)
Q Consensus       218 ~~~~~~----~~l~~L~~L~l~~~~~~~~~~--------------~~~~-~~L~~L~l~~~~~~~l~~~-----~~~l~~  273 (403)
                      ..|+.+    +.-+.|.+|.+++|..-...-              .... |.|+......|.+...|..     +.+-.+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            444322    344556666666543211100              0000 5566666666665544421     222346


Q ss_pred             CCEEecccCcCCCc-----CCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc--ccChhh---
Q 015671          274 LEYLDLSDCKRLKS-----LPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE--RIPESI---  339 (403)
Q Consensus       274 L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~--~l~~~~---  339 (403)
                      |+.+.+..|.+...     +--.+..+.+|+.|++..|.+...    +...++..+.|++|.+.+|-++  .....+   
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f  266 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF  266 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence            66666666654321     001233456677777776655422    2334455556677777666655  111111   


Q ss_pred             --hcCCCCCEEeccCCc
Q 015671          340 --IQHFVLRYLLLSYSE  354 (403)
Q Consensus       340 --~~~~~L~~L~l~~c~  354 (403)
                        ...|+|..|...+|.
T Consensus       267 ~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         267 NEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             hhhcCCCccccccchhh
Confidence              234566666666664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.81  E-value=3.8e-05  Score=63.36  Aligned_cols=105  Identities=13%  Similarity=0.138  Sum_probs=78.1

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccccccc-CCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKH-YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN  209 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  209 (403)
                      .+.-.++|++|.+..++..-.++.|.+|.+.+|.|+.+.+.+.. +++|+.|.+.+| ++. ++.++..+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chh-hhhhcchhccCCccceee
Confidence            56777888888887777666888999999999999988665554 567999999988 444 566667778888899998


Q ss_pred             ecCCCCCCcc---CccCCCCCCCCEEeecCC
Q 015671          210 LRGSKSLKSL---PSEIFNLEFLTKLDLSGC  237 (403)
Q Consensus       210 l~~~~~~~~~---~~~~~~l~~L~~L~l~~~  237 (403)
                      +-+|.....-   -..+..+++|++||+..-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8887643221   123456788888888753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=5e-06  Score=72.43  Aligned_cols=196  Identities=13%  Similarity=0.064  Sum_probs=102.5

Q ss_pred             CCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC----CCCCCCCCCCceEEEccCCCcc--cccccc
Q 015671          100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK----SFPSNLSAEKLVLFEVPENDIE--QLWDCV  172 (403)
Q Consensus       100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~----~lp~~~~l~~L~~L~l~~~~~~--~l~~~~  172 (403)
                      .++.++.+++.+|.++.    ...+..-+.. ++|++|+++.|++.    ++|  ....+|++|-|.++++.  .....+
T Consensus        69 ~~~~v~elDL~~N~iSd----WseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l  142 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISD----WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSL  142 (418)
T ss_pred             Hhhhhhhhhcccchhcc----HHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhh
Confidence            35677777777777641    1122222333 77777777777643    344  25667777777777654  234456


Q ss_pred             ccCCCCcEeecccccCccccCCCCCCCCC-CCCCcEEEecCCCCCCc--cCccCCCCCCCCEEeecCCCCCCCCcc-cc-
Q 015671          173 KHYSKLNQIIHAVCHRLIAKTPNPTLMPR-LNKVVILNLRGSKSLKS--LPSEIFNLEFLTKLDLSGCSKLKRLPE-IS-  247 (403)
Q Consensus       173 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~-  247 (403)
                      ..++.++.|+++.|..-.-.+.+ ..... -+.+++|.+..|.....  ...-..-++++..+-+..|+.-+.... .+ 
T Consensus       143 ~~lP~vtelHmS~N~~rq~n~Dd-~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se  221 (418)
T KOG2982|consen  143 DDLPKVTELHMSDNSLRQLNLDD-NCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE  221 (418)
T ss_pred             hcchhhhhhhhccchhhhhcccc-ccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCC
Confidence            66777777777766211001110 00110 13344555544432111  111112356667666666542221111 11 


Q ss_pred             -cCCCcEEEecCccCcccC--hhhhCCCCCCEEecccCcCCCcCCc------cccCCCCCcEEe
Q 015671          248 -SGNISWLFLTGTAIKELP--SSIESLLRLEYLDLSDCKRLKSLPS------SLCKLKSLGVLN  302 (403)
Q Consensus       248 -~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~  302 (403)
                       .+.+..|+++.+.+.++.  ..+..++.|.-|.+..+++...+..      -++.+++++.|+
T Consensus       222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence             156667777777766443  3456778888888877776554332      245566666664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.78  E-value=3.9e-07  Score=82.66  Aligned_cols=104  Identities=17%  Similarity=0.154  Sum_probs=54.9

Q ss_pred             hCCCCCCEEecccCcCCCcCCc--cccCCCCCcEEeecCCCCCcc--cCcccCCCCCCCEEEccCCCCc------ccChh
Q 015671          269 ESLLRLEYLDLSDCKRLKSLPS--SLCKLKSLGVLNLYGCSNLQR--LPECLGQLSSPITLGLTETNIE------RIPES  338 (403)
Q Consensus       269 ~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~l~------~l~~~  338 (403)
                      .+.++|+.|.+++|+..+..-.  --.+.+.|+.+++.+|.....  +...-.+++.|+.|.++.|...      .+...
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            4556777777777664433211  112456677777766643221  2222345677777777766433      11223


Q ss_pred             hhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCC
Q 015671          339 IIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQP  374 (403)
Q Consensus       339 ~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~  374 (403)
                      -.....|..+.+.+|+.+..-  ..-+...|+.|+.
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~--~Le~l~~c~~Ler  430 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDA--TLEHLSICRNLER  430 (483)
T ss_pred             cccccccceeeecCCCCchHH--HHHHHhhCcccce
Confidence            345566777777777643221  1223455666665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=3.6e-05  Score=47.73  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=19.0

Q ss_pred             CCCEEEccCCCCcccChhhhcCCCCCEEeccCCc
Q 015671          321 SPITLGLTETNIERIPESIIQHFVLRYLLLSYSE  354 (403)
Q Consensus       321 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~  354 (403)
                      +|++|++++|+++.+|..++.+++|+.|++++|+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            4556666666666555555666666666666654

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.68  E-value=1.6e-05  Score=80.03  Aligned_cols=112  Identities=26%  Similarity=0.223  Sum_probs=70.9

Q ss_pred             CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCC-cCCccccCCCCCcEEeecCCCCCccc------CcccCCCCC
Q 015671          249 GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLK-SLPSSLCKLKSLGVLNLYGCSNLQRL------PECLGQLSS  321 (403)
Q Consensus       249 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~l~~l~~  321 (403)
                      ++|..|++++++++.+ ..++.+.+|++|.+.+-.+.. ..-..+.++++|+.||+|........      -+.-..+|+
T Consensus       173 pNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe  251 (699)
T KOG3665|consen  173 PNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE  251 (699)
T ss_pred             CccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence            4444444445555555 567788888888887655432 11224667899999999885433221      122345889


Q ss_pred             CCEEEccCCCCc--ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          322 PITLGLTETNIE--RIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       322 L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      |+.||.+++.+.  .+...+..-|+|+.+.+-+|........
T Consensus       252 LrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~~~~~~~  293 (699)
T KOG3665|consen  252 LRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLALSAVSS  293 (699)
T ss_pred             ccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhccccccc
Confidence            999999998877  3444455667788777766655544444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.39  E-value=6.1e-05  Score=65.02  Aligned_cols=185  Identities=13%  Similarity=0.070  Sum_probs=124.7

Q ss_pred             cccccccCCCCcEeecccccCccccCCC--CCCCCCCCCCcEEEecCCCCCC----cc-------CccCCCCCCCCEEee
Q 015671          168 LWDCVKHYSKLNQIIHAVCHRLIAKTPN--PTLMPRLNKVVILNLRGSKSLK----SL-------PSEIFNLEFLTKLDL  234 (403)
Q Consensus       168 l~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~----~~-------~~~~~~l~~L~~L~l  234 (403)
                      +...+.-+..++.+++++|..-+ +-..  -..+.+-.+|+..+++.- +.+    .+       .+.+-.|+.|++.++
T Consensus        22 v~eel~~~d~~~evdLSGNtigt-EA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L   99 (388)
T COG5238          22 VVEELEMMDELVEVDLSGNTIGT-EAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDL   99 (388)
T ss_pred             HHHHHHhhcceeEEeccCCcccH-HHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence            33445568899999999994322 1000  113445577888887762 222    12       234568999999999


Q ss_pred             cCCCCCCCCccccc------CCCcEEEecCccCcccC--------------hhhhCCCCCCEEecccCcCCCcCC-----
Q 015671          235 SGCSKLKRLPEISS------GNISWLFLTGTAIKELP--------------SSIESLLRLEYLDLSDCKRLKSLP-----  289 (403)
Q Consensus       235 ~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~l~--------------~~~~~l~~L~~L~l~~~~~~~~~~-----  289 (403)
                      |+|..-...|....      +.|.+|.+++|++..+.              .....-|.|++.....|++-. .+     
T Consensus       100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a  178 (388)
T COG5238         100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSA  178 (388)
T ss_pred             cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHH
Confidence            99988777776543      89999999999876332              122456789999888877432 22     


Q ss_pred             ccccCCCCCcEEeecCCCCCcc-----cCcccCCCCCCCEEEccCCCCc-----ccChhhhcCCCCCEEeccCCcC
Q 015671          290 SSLCKLKSLGVLNLYGCSNLQR-----LPECLGQLSSPITLGLTETNIE-----RIPESIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       290 ~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~  355 (403)
                      ..+..-..|+++.+..|.+.-.     +-..+..+.+|+.|++++|.++     .+...+...+.|+.|.+.+|-.
T Consensus       179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            1234446899999998765432     1123456889999999999988     2344556778899999999953

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.32  E-value=0.00051  Score=56.89  Aligned_cols=13  Identities=38%  Similarity=0.429  Sum_probs=6.5

Q ss_pred             cCCCCCcEEeecC
Q 015671          293 CKLKSLGVLNLYG  305 (403)
Q Consensus       293 ~~l~~L~~L~l~~  305 (403)
                      ..+|+|++||...
T Consensus       137 ~klp~l~~LDF~k  149 (233)
T KOG1644|consen  137 YKLPSLRTLDFQK  149 (233)
T ss_pred             EecCcceEeehhh
Confidence            3455555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.17  E-value=3.8e-05  Score=59.38  Aligned_cols=87  Identities=18%  Similarity=0.246  Sum_probs=47.8

Q ss_pred             CCcEEEecCccCcccChhh-hCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEcc
Q 015671          250 NISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLT  328 (403)
Q Consensus       250 ~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  328 (403)
                      +|+..++++|.++++|..+ ..++.++.|++++|. ...+|..+..++.|+.|+++.|++... |..+..+.++-.|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCC
Confidence            4444455556666666554 344566666666655 344555566666666666666554433 2233335556666666


Q ss_pred             CCCCcccChh
Q 015671          329 ETNIERIPES  338 (403)
Q Consensus       329 ~~~l~~l~~~  338 (403)
                      +|.+..+|..
T Consensus       132 ~na~~eid~d  141 (177)
T KOG4579|consen  132 ENARAEIDVD  141 (177)
T ss_pred             CCccccCcHH
Confidence            6665555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.16  E-value=3.7e-05  Score=59.47  Aligned_cols=107  Identities=21%  Similarity=0.260  Sum_probs=77.8

Q ss_pred             cEEEecCccCcccChh---hhCCCCCCEEecccCcCCCcCCcccc-CCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671          252 SWLFLTGTAIKELPSS---IESLLRLEYLDLSDCKRLKSLPSSLC-KLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL  327 (403)
Q Consensus       252 ~~L~l~~~~~~~l~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  327 (403)
                      ..++++.+.+-.++..   +.....|+..++++|.+ ...|..+. .++.++.|++++|. ...+|+.+..++.|+.|++
T Consensus        30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence            3445555555444443   35556778889999874 45555543 56689999999865 4567778999999999999


Q ss_pred             cCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          328 TETNIERIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       328 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      +.|.+...|..+..+.+|-.|+..+|.. ..+|.
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~-~eid~  140 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENAR-AEIDV  140 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCcc-ccCcH
Confidence            9999999998888888888898887753 33443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.85  E-value=0.00039  Score=59.89  Aligned_cols=104  Identities=15%  Similarity=0.086  Sum_probs=58.4

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCC--Ccc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPEN--DIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~--~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      ..|..|++.+..++++...-.+++|++|.++.|  ++. .++.....+++|++|++++|+ +. .+..+..+..+.+|..
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~-~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IK-DLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cc-cccccchhhhhcchhh
Confidence            445555555555555544446777888888777  333 344455556888888888773 22 2334445556666677


Q ss_pred             EEecCCCCCCccC---ccCCCCCCCCEEeecC
Q 015671          208 LNLRGSKSLKSLP---SEIFNLEFLTKLDLSG  236 (403)
Q Consensus       208 L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~  236 (403)
                      |++.+|.......   ..+.-+++|..|+-..
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            7777765433111   1223355666665544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.57  E-value=0.0013  Score=56.79  Aligned_cols=82  Identities=27%  Similarity=0.239  Sum_probs=40.3

Q ss_pred             CCCCCCEEecccC--cCCCcCCccccCCCCCcEEeecCCCCC--cccCcccCCCCCCCEEEccCCCCcccC----hhhhc
Q 015671          270 SLLRLEYLDLSDC--KRLKSLPSSLCKLKSLGVLNLYGCSNL--QRLPECLGQLSSPITLGLTETNIERIP----ESIIQ  341 (403)
Q Consensus       270 ~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~l~~l~----~~~~~  341 (403)
                      .+++|++|.++.|  +..+.++.....+|+|+++.+++|.+.  .+++ .+..+.+|..|++.+|..+.+.    ..+.-
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            5556666666666  444444444444566666666665432  1221 2344555555566555544322    12334


Q ss_pred             CCCCCEEeccC
Q 015671          342 HFVLRYLLLSY  352 (403)
Q Consensus       342 ~~~L~~L~l~~  352 (403)
                      +++|+.|+-..
T Consensus       142 l~~L~~LD~~d  152 (260)
T KOG2739|consen  142 LPSLKYLDGCD  152 (260)
T ss_pred             hhhhccccccc
Confidence            45555554433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=7.8e-05  Score=64.58  Aligned_cols=56  Identities=16%  Similarity=0.118  Sum_probs=27.3

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccc--cccccCCCCcEeecccc
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLW--DCVKHYSKLNQIIHAVC  186 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~  186 (403)
                      +.|.+|.|+-|.++++.....+++|++|.|..|.|.++-  .-+.++++|+.|.+..|
T Consensus        41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            445555555555555544434455555555555554442  23444455555554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.95  E-value=0.00056  Score=66.90  Aligned_cols=29  Identities=17%  Similarity=0.049  Sum_probs=14.2

Q ss_pred             CCCCCCCEEEccCCCCccc--ChhhhcCCCC
Q 015671          317 GQLSSPITLGLTETNIERI--PESIIQHFVL  345 (403)
Q Consensus       317 ~~l~~L~~L~l~~~~l~~l--~~~~~~~~~L  345 (403)
                      ..++.++.+.+..+.....  ...+..++.|
T Consensus       359 ~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             hcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            4556666666666553322  1233444544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.82  E-value=0.00088  Score=65.54  Aligned_cols=16  Identities=31%  Similarity=0.310  Sum_probs=10.4

Q ss_pred             ccCCCCCcEEeecCCC
Q 015671          292 LCKLKSLGVLNLYGCS  307 (403)
Q Consensus       292 ~~~l~~L~~L~l~~~~  307 (403)
                      ...++.++.+.+..|.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            3456677777776665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.00067  Score=58.97  Aligned_cols=77  Identities=22%  Similarity=0.245  Sum_probs=46.0

Q ss_pred             CCCCCCEEeecCCCCCCCCcccc-cCCCcEEEecCccCcccC--hhhhCCCCCCEEecccCcCCCcCCc-----cccCCC
Q 015671          225 NLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLTGTAIKELP--SSIESLLRLEYLDLSDCKRLKSLPS-----SLCKLK  296 (403)
Q Consensus       225 ~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~l~  296 (403)
                      .|+.|++|.++-|. ++.+..+. +..|++|+|..|.|.++.  ..+..+++|+.|.|..|+=.+.-+.     .+.-+|
T Consensus        39 kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             hcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            45555555555533 22222222 256666666666666544  3567888888888888775555443     245578


Q ss_pred             CCcEEe
Q 015671          297 SLGVLN  302 (403)
Q Consensus       297 ~L~~L~  302 (403)
                      +|++||
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            888876

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.15  E-value=0.012  Score=30.26  Aligned_cols=18  Identities=11%  Similarity=0.290  Sum_probs=9.6

Q ss_pred             ceEEEccCCCcccccccc
Q 015671          155 LVLFEVPENDIEQLWDCV  172 (403)
Q Consensus       155 L~~L~l~~~~~~~l~~~~  172 (403)
                      |++|++++|.++.+|..+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.89  E-value=0.17  Score=39.44  Aligned_cols=38  Identities=8%  Similarity=0.037  Sum_probs=13.3

Q ss_pred             CCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecC
Q 015671          198 LMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSG  236 (403)
Q Consensus       198 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  236 (403)
                      .+.++++|+.+.+.. .....-...+.++++|+.+.+..
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            344445555555543 21111123344455555555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.88  E-value=0.17  Score=39.36  Aligned_cols=104  Identities=12%  Similarity=0.196  Sum_probs=46.9

Q ss_pred             ChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC--CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCCccccc
Q 015671           94 NPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSFPSNL--SAEKLVLFEVPENDIEQLW  169 (403)
Q Consensus        94 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~l~~~~~~~l~  169 (403)
                      ...+|..+++|+.+.+... +       ..+......  .+|+.+.+.++ +..++...  .++.|+++.+.. .+..++
T Consensus         4 ~~~~F~~~~~l~~i~~~~~-~-------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~   73 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPNT-I-------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG   73 (129)
T ss_dssp             -TTTTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-
T ss_pred             CHHHHhCCCCCCEEEECCC-e-------eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccc
Confidence            3456777778888777542 2       233333332  57777777653 66665433  455677777754 444443


Q ss_pred             -cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671          170 -DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG  212 (403)
Q Consensus       170 -~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (403)
                       ..+..+++|+.+.+..+  +. .++. ..+.++ +|+.+.+..
T Consensus        74 ~~~F~~~~~l~~i~~~~~--~~-~i~~-~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   74 DNAFSNCTNLKNIDIPSN--IT-EIGS-SSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTTTT-TTECEEEETTT---B-EEHT-TTTTT--T--EEE-TT
T ss_pred             cccccccccccccccCcc--cc-EEch-hhhcCC-CceEEEECC
Confidence             34555677777776542  21 2222 245555 666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.57  E-value=0.014  Score=29.97  Aligned_cols=16  Identities=31%  Similarity=0.428  Sum_probs=6.8

Q ss_pred             CCEEEccCCCCcccCh
Q 015671          322 PITLGLTETNIERIPE  337 (403)
Q Consensus       322 L~~L~l~~~~l~~l~~  337 (403)
                      |++|++++|.++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            3444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.49  E-value=0.027  Score=26.86  Aligned_cols=10  Identities=50%  Similarity=0.431  Sum_probs=3.2

Q ss_pred             CCEEeccCCc
Q 015671          345 LRYLLLSYSE  354 (403)
Q Consensus       345 L~~L~l~~c~  354 (403)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3344444433

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.96  E-value=0.036  Score=26.40  Aligned_cols=13  Identities=23%  Similarity=0.271  Sum_probs=4.3

Q ss_pred             eeEEEecCCCCCC
Q 015671          133 VKYLHWHGYPLKS  145 (403)
Q Consensus       133 L~~L~l~~~~~~~  145 (403)
                      |+.|++++|.+++
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.67  E-value=0.02  Score=47.74  Aligned_cols=80  Identities=26%  Similarity=0.233  Sum_probs=44.3

Q ss_pred             CCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCccc-Cccc-CCCCCCCEEEccCC-CCc-ccChhhhcCCCCCEEe
Q 015671          274 LEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL-PECL-GQLSSPITLGLTET-NIE-RIPESIIQHFVLRYLL  349 (403)
Q Consensus       274 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l-~~l~~L~~L~l~~~-~l~-~l~~~~~~~~~L~~L~  349 (403)
                      ++.++.+++.+...--..+.+++.++.|.+.+|.-.+.- .+.+ .-.++|+.|++++| +|+ .=..++..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            455555555544433334556666666666666544321 1111 13567777777776 566 2233566777777777


Q ss_pred             ccCC
Q 015671          350 LSYS  353 (403)
Q Consensus       350 l~~c  353 (403)
                      +.+=
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            6653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.58  E-value=0.073  Score=44.45  Aligned_cols=76  Identities=9%  Similarity=0.079  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhhhc--CCCCCccccCChhHHH-HHHhhCcCCCceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccC
Q 015671           37 LLQELGREIVRQES--INPGNRSRLWHHEDIY-EVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSS  113 (403)
Q Consensus        37 ll~dla~~~~~~e~--~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~  113 (403)
                      -=+++|.++.+...  +..++...++...+.. +..  ....+++....++.+.........+.+..++.|+.|.+.+|.
T Consensus        59 ~drAaAe~Il~~GgaVkf~~d~~~~~~d~~g~~~lp--~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen   59 PDRAAAEWILHCGGAVKFVSDREWLQKDYNGYFSLP--GPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             hhhHHHHHHHhcCcceeecCChHhhcCcccceecCC--CCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            33567777777665  2222333332222111 111  111233333345555544444555677788888888887775


Q ss_pred             C
Q 015671          114 F  114 (403)
Q Consensus       114 ~  114 (403)
                      .
T Consensus       137 ~  137 (221)
T KOG3864|consen  137 Y  137 (221)
T ss_pred             c
Confidence            3

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.56  E-value=0.45  Score=25.30  Aligned_cols=19  Identities=16%  Similarity=0.375  Sum_probs=12.8

Q ss_pred             CCCCEEEccCCCCcccChh
Q 015671          320 SSPITLGLTETNIERIPES  338 (403)
Q Consensus       320 ~~L~~L~l~~~~l~~l~~~  338 (403)
                      ++|+.|++.+|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            5667777777777766654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.56  E-value=0.45  Score=25.30  Aligned_cols=19  Identities=16%  Similarity=0.375  Sum_probs=12.8

Q ss_pred             CCCCEEEccCCCCcccChh
Q 015671          320 SSPITLGLTETNIERIPES  338 (403)
Q Consensus       320 ~~L~~L~l~~~~l~~l~~~  338 (403)
                      ++|+.|++.+|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            5667777777777766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (285), Expect = 1e-28
 Identities = 61/294 (20%), Positives = 105/294 (35%), Gaps = 40/294 (13%)

Query: 95  PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNL-SAE 153
             +  +       +  + +     K     L+D        L     PL  FP       
Sbjct: 46  WHSAWRQANSNNPQIETRTGR-ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS 104

Query: 154 KLVLFEVPENDIEQLWDCVKHYSKL-------NQIIHAVCHRLIAKTPNPTLMPRLNKVV 206
            L    +    + +L D ++ ++ L       N +       L      P  +  LN++ 
Sbjct: 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-----RAL------PASIASLNRLR 153

Query: 207 ILNLRGSKSLKSLPSEIFNLEF---------LTKLDLSGCSKLKRLP-EISS-GNISWLF 255
            L++R    L  LP  + + +          L  L L   + ++ LP  I++  N+  L 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLK 212

Query: 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC 315
           +  + +  L  +I  L +LE LDL  C  L++ P        L  L L  CSNL  LP  
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 316 LGQLSSPITLGLTE-TNIERIPESIIQHFVLRYLLLSY-------SERLQSLPS 361
           + +L+    L L    N+ R+P  I Q      +L+           R  + P+
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (276), Expect = 2e-27
 Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 6/157 (3%)

Query: 207 ILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPS 266
            L  +GS +L+     +   +     D +      R    +  N      TG A+K    
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN--NPQIETRTGRALKATAD 73

Query: 267 SIESL--LRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPIT 324
            +E         L+L     L   P    +L  L  + +     L  LP+ + Q +   T
Sbjct: 74  LLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLET 131

Query: 325 LGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361
           L L    +  +P SI     LR L +     L  LP 
Sbjct: 132 LTLARNPLRALPASIASLNRLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 22/109 (20%)

Query: 274 LEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG-------------------CSNLQRLPE 314
            E L       L+     L + +     +                         L+   +
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD 73

Query: 315 CLGQLSSP--ITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361
            L   + P  + L L    + + P+   +   L+++ +  +  L  LP 
Sbjct: 74  LLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPD 121

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 20/161 (12%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTA 260
             N   +LN+     L +LP  +     +T L +   + L  LP      +  L ++G  
Sbjct: 38  LNNGNAVLNVGE-SGLTTLPDCLPAH--ITTLVIPDNN-LTSLPA-LPPELRTLEVSGNQ 92

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           +  LP     LL L          L +LPS LCK      L ++G   L  LP     L 
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLT-HLPALPSGLCK------LWIFGN-QLTSLPVLPPGLQ 144

Query: 321 SPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361
               L +++  +  +P    +   L  L    + +L SLP 
Sbjct: 145 E---LSVSDNQLASLPALPSE---LCKLWAYNN-QLTSLPM 178

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 200 PRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGT 259
               ++  L + G++ L SLP     L  L+       + L  LP      +  L++ G 
Sbjct: 78  ALPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPL-THLPALPS----GLCKLWIFGN 131

Query: 260 AIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL 319
            +  LP        L+ L +SD  +L SLP+   +L  L   N      L  LP     L
Sbjct: 132 QLTSLPVLPPG---LQELSVSDN-QLASLPALPSELCKLWAYNN----QLTSLPMLPSGL 183

Query: 320 SSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361
                L +++  +  +P    +   L  L    + RL SLP+
Sbjct: 184 QE---LSVSDNQLASLPTLPSE---LYKLWAYNN-RLTSLPA 218

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.5 bits (162), Expect = 5e-12
 Identities = 38/157 (24%), Positives = 57/157 (36%), Gaps = 15/157 (9%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255
           PTL   L K+   N R    L SLP+    L    +L +SG  +L  LP      +  L 
Sbjct: 197 PTLPSELYKLWAYNNR----LTSLPALPSGL---KELIVSGN-RLTSLPV-LPSELKELM 247

Query: 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC 315
           ++G  +  LP     L     L +    +L  LP SL  L S   +NL G   L      
Sbjct: 248 VSGNRLTSLPMLPSGL---LSLSVYRN-QLTRLPESLIHLSSETTVNLEGN-PLSERTLQ 302

Query: 316 LGQ-LSSPITLGLTETNIERIPESIIQHFVLRYLLLS 351
             + ++S           +    S  +     +L  +
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 4e-15
 Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 18/172 (10%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIFN-LEFLTKLDLSGCSK---LKRLPEISSGNI 251
             ++P  N   +       ++    ++ F+  +   K  L G ++   +  L E      
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 252 SWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR 311
           S L L    +  LP ++    ++  L+++    L SLP     L+ L   +      L  
Sbjct: 62  SELQLNRLNLSSLPDNLPP--QITVLEITQN-ALISLPELPASLEYLDACDN----RLST 114

Query: 312 LPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPL 363
           LPE    L     L +    +  +PE       L Y+    + +L  LP   
Sbjct: 115 LPELPASLKH---LDVDNNQLTMLPELPAL---LEYINADNN-QLTMLPELP 159

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 5e-14
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 16/171 (9%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255
           P L   L     L++  ++ L  LP     LE    ++     +L  LPE    ++  L 
Sbjct: 116 PELPASLKH---LDVDNNQ-LTMLPELPALLE---YINADNN-QLTMLPE-LPTSLEVLS 166

Query: 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLY-GCSN--LQRL 312
           +    +  LP   ESL   E LD+S    L+SLP+   +        ++  C    +  +
Sbjct: 167 VRNNQLTFLPELPESL---EALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITHI 222

Query: 313 PECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPL 363
           PE +  L    T+ L +  +       +     +                 
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.5 bits (188), Expect = 4e-15
 Identities = 49/291 (16%), Positives = 103/291 (35%), Gaps = 35/291 (12%)

Query: 95  PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSA-E 153
                ++ KL+ + F +S F  +N        +       Y   +     S+ SNL    
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN-----SDYAKQYENEELSW-SNLKDLT 494

Query: 154 KLVLFEVPENDIEQLWDCVKHYSKL-------NQIIHAVCHRLIAKTPNPTLMPRLNKVV 206
            + L+     ++ QL D +    +L       N+ I          T          K+ 
Sbjct: 495 DVELYN--CPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLADDEDTGPKIQ 551

Query: 207 ILNLRGSKSLKSLPSE--IFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKE 263
           I  +  +  L+  P+   +  +  L  LD     K++ L    +   ++ L L    I+E
Sbjct: 552 IFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDYNQIEE 609

Query: 264 LPSSIESLLR-LEYLDLSDCKRLKSLPS--SLCKLKSLGVLNLYGCSNLQRLPECLG--- 317
           +P    +    +E L  S  K LK +P+  +   +  +G ++      +      +    
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSM 667

Query: 318 ---QLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
              +  +  T+ L+   I++ P  +      +  ++LS +  + S+P    
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSL 717

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 32/211 (15%), Positives = 67/211 (31%), Gaps = 39/211 (18%)

Query: 194 PNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNIS 252
                   L   +    +    +      +   + L   DL     + R PE+      S
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL-QDAINRNPEMKPIKKDS 421

Query: 253 WLFLTGT-------AIKELPSSIESLLRLEYLDLSDCK-------------------RLK 286
            + L  T        I  +  +I+ L +L+ +  ++                     + +
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 287 SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE----------TNIERIP 336
           +   S   LK L  + LY C N+ +LP+ L  L    +L +             +  R+ 
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 337 ESIIQHFVLRYLLLSYSERLQSLPSPLFLAR 367
           +       ++   + Y+  L+  P+   L +
Sbjct: 542 DDEDTGPKIQIFYMGYN-NLEEFPASASLQK 571

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 8e-13
 Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 22/177 (12%)

Query: 196 PTLMPRLNKVVILNLRG-------SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP-EIS 247
             L    + +  + L           SLK       N   LT +DL    KL  L  +  
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR 748

Query: 248 SG---NISWLFLTGTAIKELPSSIESLLRLEYLDL------SDCKRLKSLPSSLCKLKSL 298
           +     +S + ++       P+   +  +L+   +         + L+  P+ +    SL
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 299 GVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSE 354
             L +    +++++ E L        L + +     I   S+  +      +L Y +
Sbjct: 809 IQLQIGSN-DIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 23/199 (11%), Positives = 46/199 (23%), Gaps = 38/199 (19%)

Query: 199 MPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTG 258
           +    +V  L+L G  +   +P  I  L  L  L             +         ++ 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSE 377

Query: 259 TAIKELPSSIESLL-----RLEYLDLSDCK----------------------------RL 285
                +    + +      RL   DL                                R+
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 286 KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVL 345
             +  ++ +L  L ++              +    +           E    S      L
Sbjct: 438 TFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDA---NSDYAKQYENEELSWSNLKDL 493

Query: 346 RYLLLSYSERLQSLPSPLF 364
             + L     +  LP  L+
Sbjct: 494 TDVELYNCPNMTQLPDFLY 512

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 21/182 (11%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIF--NLEFLTKLDLSG-------CSKLKRLPEI 246
                  ++V  L    +K LK +P+     ++  +  +D S         +    + + 
Sbjct: 612 EDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 247 SSGNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCK-------RLKSLPSSLCKLKSL 298
              N S + L+   I++ P+ +  +   +  + LS+          LK    +      L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 299 GVLNLYGCSNLQRLPE--CLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL 356
             ++L     L  L +      L     + ++       P   +    L+   + +    
Sbjct: 731 TTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDA 789

Query: 357 QS 358
           + 
Sbjct: 790 EG 791

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 23/194 (11%), Positives = 56/194 (28%), Gaps = 8/194 (4%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTA 260
           +L K   + ++  ++ + +            LD             +  +++W F     
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELD 309

Query: 261 I--KELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQ 318
           +   +    +++  R+  L L+       +P ++ +L  L VL+     +        G 
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGD 368

Query: 319 LSSPITLGLTETN-----IERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQ 373
                 +     +      +++     Q   L  LL     R   +      +R  L   
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 374 PFLGIVEHTHRIPH 387
               +      I  
Sbjct: 429 QIGNLTNRITFISK 442

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 9e-15
 Identities = 23/204 (11%), Positives = 57/204 (27%), Gaps = 37/204 (18%)

Query: 194 PNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISW 253
                     K   +    +  +  +   +  L  L +  +     +      +  N + 
Sbjct: 174 SIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232

Query: 254 LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG-------- 305
            +      K      ++L  L  +++ +C  L  LP+ L  L  + ++N+          
Sbjct: 233 EYAQQY--KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 306 -------------CSNLQRL------------PECLGQLSSPITLGLTETNIERIPESII 340
                           +Q +               L ++     L      +E    +  
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350

Query: 341 QHFVLRYLLLSYSERLQSLPSPLF 364
               L  L L+Y+ ++  +P+   
Sbjct: 351 SEIKLASLNLAYN-QITEIPANFC 373

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 35/274 (12%), Positives = 79/274 (28%), Gaps = 77/274 (28%)

Query: 95  PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEK 154
                ++ KLR     +S F  EN C                            N ++E 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENIC------------------------EAWENENSEY 234

Query: 155 LVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSK 214
              ++  +   + L         L                             + +    
Sbjct: 235 AQQYKTEDLKWDNL-------KDL---------------------------TDVEVYNCP 260

Query: 215 SLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRL 274
           +L  LP+ +  L  +  ++++   +     ++     +             +      ++
Sbjct: 261 NLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQA------------LADAPVGEKI 307

Query: 275 EYLDLSDCKRLKSL--PSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNI 332
           + + +     LK+    +SL K+K LG+L       L+      G      +L L    I
Sbjct: 308 QIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQI 365

Query: 333 ERIPESIIQHFV-LRYLLLSYSERLQSLPSPLFL 365
             IP +       +  L  +++ +L+ +P+    
Sbjct: 366 TEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDA 398

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 28/182 (15%), Positives = 63/182 (34%), Gaps = 23/182 (12%)

Query: 202 LNKVVILNLRG-------SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP-EISSGNIS- 252
            + +  +NL G         SLK       N   LT +DL    KL +L  +  +  +  
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPY 514

Query: 253 --WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRL------KSLPSSLCKLKSLGVLNLY 304
              + L+  +  + P+   +   L+   + + +        +  P  +    SL  L + 
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 305 GCSNLQRLPECLGQLSSPITLGLTETNIERIP-ESIIQHFVLRYLLLSYSERLQSLPSPL 363
              +++++ E +    +   L + +     I    +  +      +L Y  + Q +    
Sbjct: 575 SN-DIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD-KTQDIRGCD 630

Query: 364 FL 365
            L
Sbjct: 631 AL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 21/180 (11%), Positives = 42/180 (23%), Gaps = 20/180 (11%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTA 260
              +V  L+L G  +   +P  I  L  L  L L                          
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG-----------------EKVNE 121

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLK--SLGVLNLYGCSNLQRLPECLGQ 318
               P  I + +  E          K+      +     L    +      + + +    
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 319 LSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGI 378
                 +G    NI  + +++++   LR   +  S    +                    
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKT 240

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 21/181 (11%), Positives = 50/181 (27%), Gaps = 38/181 (20%)

Query: 194 PNPTLMPRLNKVVILNLRG-------SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI 246
           PN      ++ +  ++           K+   L    F    ++ ++LS   ++ + P  
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFP-- 449

Query: 247 SSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCK-------RLKSLPSSLCKLKSLG 299
                                  +   L  ++L            LK    +      L 
Sbjct: 450 ------------------KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 300 VLNLYGCSNLQRLPE--CLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ 357
            ++L     L +L +      L   + + L+  +  + P   +    L+   +      Q
Sbjct: 492 SIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 358 S 358
            
Sbjct: 551 G 551

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 267 SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG----CSNLQRLPECLGQLSSP 322
           S+ S  R+  L L        +P ++ +L  L VL L       +     P+ +    S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 323 ITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFL 365
                   +     ++ + +           + + S P    +
Sbjct: 136 EQKQKMRMH---YQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG------NISW 253
            L  + IL L  +  ++++    F  L  L  L+L       RL  I +G       +  
Sbjct: 86  HLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN----RLTTIPNGAFVYLSKLKE 140

Query: 254 LFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQR 311
           L+L    I+ +PS     +  L  LDL + KRL  +   +   L +L  LNL  C NL+ 
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE 199

Query: 312 LPECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
           +P  L  L     L L+  ++  I     Q  + L+ L +  S ++Q +    F
Sbjct: 200 IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAF 251

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 237 CSK--LKRLPEISSGNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPS-SL 292
           C +  L+ +P+  S N   L L    I+ +  +  + L  LE L LS    ++++   + 
Sbjct: 50  CVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAF 108

Query: 293 CKLKSLGVLNLYGCSNLQRLPE-CLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLL 350
             L +L  L L+    L  +P      LS    L L    IE IP         LR L L
Sbjct: 109 NGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167

Query: 351 SYSERLQSLPSPLF 364
              +RL  +    F
Sbjct: 168 GELKRLSYISEGAF 181

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 30/133 (22%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEIS----------SG 249
           R+  +  L+L   K L  +    F  L  L  L+L+ C  L+ +P ++          SG
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSG 216

Query: 250 N-ISW--------------LFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLC 293
           N +S               L++  + I+ +   + ++L  L  ++L+    L  LP  L 
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLF 275

Query: 294 K-LKSLGVLNLYG 305
             L  L  ++L+ 
Sbjct: 276 TPLHHLERIHLHH 288

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 18/166 (10%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255
             L P L     L +  ++ L+ LP E+ N  FL  +D+     LK+LP+    ++ ++ 
Sbjct: 127 SDLPPLLEY---LGVSNNQ-LEKLP-ELQNSSFLKIIDVDNN-SLKKLPD-LPPSLEFIA 179

Query: 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC 315
                ++ELP  +++L  L  +   +   LK LP     L+S+   N    + L+ LPE 
Sbjct: 180 AGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGN----NILEELPE- 232

Query: 316 LGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361
           L  L    T+      ++ +P+       L  L +  +  L  LP 
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDLPPS---LEALNVRDN-YLTDLPE 274

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 40/184 (21%)

Query: 209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCS---------------KLKRLPEISSGNISW 253
            LR S +L  +P E  N++  T+   +                   + RL +        
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 254 LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS------ 307
           L L    +  LP        LE L  S    L  LP     LKSL V N    +      
Sbjct: 76  LELNNLGLSSLPELPPH---LESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 308 ----------NLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ 357
                      L++LPE L   S    + +   +++++P+       L ++    + +L+
Sbjct: 132 LLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPS---LEFIAAGNN-QLE 186

Query: 358 SLPS 361
            LP 
Sbjct: 187 ELPE 190

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 27/181 (14%)

Query: 197 TLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL 256
            L      +  +    +  L+ LP E+ NL FLT +       LK LP+    ++  L +
Sbjct: 209 KLPDLPLSLESIVAGNNI-LEELP-ELQNLPFLTTIYADNN-LLKTLPD-LPPSLEALNV 264

Query: 257 TGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKL--------------KSLGVLN 302
               + +LP   +SL  L+  +      L  LP +L  L               SL  LN
Sbjct: 265 RDNYLTDLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRSLCDLPPSLEELN 323

Query: 303 LYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSP 362
           +     L  LP    +L     L  +  ++  +PE       L+ L + Y+  L+  P  
Sbjct: 324 VSNN-KLIELPALPPRLER---LIASFNHLAEVPELPQN---LKQLHVEYN-PLREFPDI 375

Query: 363 L 363
            
Sbjct: 376 P 376

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 21/146 (14%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255
             L P L     LN+  +K L  LP+    LE   +L  S    L  +PE    N+  L 
Sbjct: 313 CDLPPSL---EELNVSNNK-LIELPALPPRLE---RLIASFN-HLAEVPE-LPQNLKQLH 363

Query: 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC 315
           +    ++E P   ES+  L          L  +P     LK    L++     L+  P+ 
Sbjct: 364 VEYNPLREFPDIPESVEDLRMNS-----HLAEVPELPQNLK---QLHVETN-PLREFPDI 414

Query: 316 LGQLSSPITLGLTETNIERIPESIIQ 341
              +     L +    +    E   +
Sbjct: 415 PESVED---LRMNSERVVDPYEFAHE 437

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 18/133 (13%)

Query: 244 PEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSL----------- 292
             +S+  +       + + E+P   E++        +  +  ++ P              
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 293 --CKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLL 350
             C  +    L L     L  LPE    L S   L  +  ++  +PE       L     
Sbjct: 66  RDCLDRQAHELELNNL-GLSSLPELPPHLES---LVASCNSLTELPELPQSLKSLLVDNN 121

Query: 351 SYSERLQSLPSPL 363
           +    L  LP  L
Sbjct: 122 NLKA-LSDLPPLL 133

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 31/171 (18%)

Query: 201 RLNKVVILNLRGSK--SLKSLPSEIFNLEFLTKLDLSG--------------CSKLKRLP 244
           +  +V  L+L G        +PS + NL +L  L + G               ++L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL- 106

Query: 245 EISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLY 304
                 I+   ++G     +P  +  +  L  LD S      +LP S+  L +L  +   
Sbjct: 107 -----YITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 305 GCSNLQ-RLPECLGQLSSPIT-LGLTETNIE-RIPESIIQHFVLRYLLLSY 352
           G + +   +P+  G  S   T + ++   +  +IP +   +  L ++ LS 
Sbjct: 158 G-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNLAFVDLSR 206

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 45/171 (26%)

Query: 218 SLPSEIFNLEFLTKLDLSG-------------CSKLKRL------------PEISSGNIS 252
           ++P  +  ++ L  LD S                 L  +                 G+ S
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFS 173

Query: 253 WL---------FLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNL 303
            L          LTG    ++P +  + L L ++DLS               K+   ++L
Sbjct: 174 KLFTSMTISRNRLTG----KIPPTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 304 YGCSNLQ-RLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSY 352
               +L   L + +G   +   L L    I   +P+ + Q   L  L +S+
Sbjct: 229 AKN-SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 18/174 (10%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG------NISW 253
            L+ + +L L  +  ++ +    F  L  L  L+L        L  I SG       +  
Sbjct: 97  HLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN----WLTVIPSGAFEYLSKLRE 151

Query: 254 LFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQR 311
           L+L    I+ +PS     +  L  LDL + K+L+ +   +   L +L  LNL  C N++ 
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD 210

Query: 312 LPECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
           +P  L  L     L ++  +   I          L+ L +  S ++  +    F
Sbjct: 211 MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAF 262

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 237 CSK--LKRLPEISSGNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPS-SL 292
           C++  L  +P+    N  +L L    I+ + +     L  LE L L     ++ +   + 
Sbjct: 61  CTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAF 119

Query: 293 CKLKSLGVLNLYGCSNLQRLP-ECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLL 350
             L SL  L L+    L  +P      LS    L L    IE IP         L  L L
Sbjct: 120 NGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178

Query: 351 SYSERLQSLPSPLF 364
              ++L+ +    F
Sbjct: 179 GELKKLEYISEGAF 192

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 30/132 (22%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGT 259
           +  ++ L+L   K L+ +    F  L  L  L+L  C  +K +P ++    +  L ++G 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGN 228

Query: 260 AIKELP--------------------SSIES-----LLRLEYLDLSDCKRLKSLPSSLCK 294
              E+                     S IE      L  L  L+L+    L SLP  L  
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFT 287

Query: 295 -LKSLGVLNLYG 305
            L+ L  L+L+ 
Sbjct: 288 PLRYLVELHLHH 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 20/167 (11%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF--NLEFLTKLDLSGCSKLKRLP-EISSGNISWLFLTG 258
            ++V  L+L+ ++ + ++       + + L  L+L     +  +  ++    +  L L+ 
Sbjct: 143 RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSS 200

Query: 259 TAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQ 318
             +  +    +S   + ++ L + K L  +  +L   ++L   +L G             
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGN-GFHCGTLRDFF 258

Query: 319 LSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFL 365
             +     + +  ++++     +   +  L    +   + LP+P   
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS-- 252
             +    N+  I  +  S  LK   + +  +   + +LDLSG   L ++        +  
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 253 -WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR 311
             L L+   + E    +ESL  L  LDL++   ++ L        S+  L+     N+ R
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANN-NISR 113

Query: 312 LPECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLFLAR 367
           +     +      + L    I  + +        ++YL L  +  + ++      A 
Sbjct: 114 VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAAS 167

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 29/172 (16%)

Query: 221 SEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPS-SIESLLRLEYLDL 279
            E+     +  L  +    + R+          ++L    I  L         R++YLDL
Sbjct: 93  QELLVGPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 280 SDCK------------------------RLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC 315
              +                         +  +   +     L  L+L     L  +   
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPE 209

Query: 316 LGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLAR 367
               +    + L    +  I +++     L +  L  +          F ++
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN-GFHCGTLRDFFSK 260

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 11/171 (6%)

Query: 200 PRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGT 259
           P+  K   L++   + LK  P+   +L FL  L L+         +++  ++S+L L+  
Sbjct: 304 PKHFKWQSLSIIRCQ-LKQFPT--LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360

Query: 260 AIKELPS---SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC- 315
           A+        S      L +LDLS       + ++   L+ L  L+    S L+R+ E  
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQH-STLKRVTEFS 418

Query: 316 -LGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
               L   + L ++ TN +   + I      L  L ++ +    +  S +F
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 31/183 (16%), Positives = 71/183 (38%), Gaps = 16/183 (8%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEIS---SGNI 251
                  +++  L+L   + ++++  + +  L  L+ L L+G   ++     S     ++
Sbjct: 49  SYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSL 106

Query: 252 SWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKS--LPSSLCKLKSLGVLNLYGCSN 308
             L    T +  L S  I  L+ L+ L+++    + S  LP+    L +L  ++L     
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN-Y 164

Query: 309 LQRLPEC----LGQLSSP-ITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPL 363
           +Q +       L +     ++L ++   I+ I +   Q   L  L L  +    ++    
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 364 FLA 366
              
Sbjct: 225 LQN 227

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 12/172 (6%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF---NLEFLTKLDLSGCSKLKRLPEISSG--NISWLFL 256
           L  +  L+L  +  L       +       L  LDLS       +     G   +  L  
Sbjct: 349 LPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDF 406

Query: 257 TGTAIKELP--SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE 314
             + +K +   S+  SL +L YLD+S              L SL  L + G S       
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466

Query: 315 C-LGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
                 ++   L L++  +E+I   +      L+ L +S++  L  L S  +
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHY 517

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 5/151 (3%)

Query: 218 SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELP-SSIESLLRLEY 276
           SL   I  +  +T        KL ++P+    +   + L+   +K L   S  +   L++
Sbjct: 3   SLNPCIEVVPNIT-YQCMD-QKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQW 60

Query: 277 LDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP 336
           LDLS C+       +   L  L  L L G       P     L+S   L   ET +  + 
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 337 ESIIQHFV-LRYLLLSYSERLQSLPSPLFLA 366
              I   + L+ L ++++  + S   P + +
Sbjct: 121 SFPIGQLITLKKLNVAHN-FIHSCKLPAYFS 150

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 190 IAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISS 248
           + +    +    L K++ L++  +   K     IF  L  L  L ++G S          
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 249 GNIS---WLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNL 303
            N +   +L L+   ++++     ++L RL+ L++S    L  L  S   +L SL  L+ 
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDC 528

Query: 304 YGCSNLQRLPECLGQLSS 321
                ++     L     
Sbjct: 529 SFN-RIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS---WLFLT 257
           L  +  L + G+    +  S +F N   LT LDLS C +L+++       +     L ++
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMS 505

Query: 258 GTAIKELP-SSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYG 305
              +  L  S    L  L  LD S   R+++         KSL   NL  
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 43/310 (13%), Positives = 90/310 (29%), Gaps = 51/310 (16%)

Query: 93  LNPSTFTKMPKLRFLKFYS---------SSFNGENK--------CKMSYLQDPGFAEVKY 135
           L      ++  L+ L             + F+              +  +       ++ 
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 136 LHW-------HGYPLKSFP----SNLSAEKLVL------FEVPENDIEQLWDCVKHYSKL 178
                        P+          +   +L L        + +  ++ L          
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL----AGLHVH 234

Query: 179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSK--SLKSLPSEIFNLEFLTKLDLSG 236
             I+         +   P++M  L  V I   R +          +   L  ++ + L+G
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 237 CSKLKRLPEIS-SGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKL 295
              +K L ++        L +    +K+ P+    L  L+ L L+  K   S+      L
Sbjct: 295 V-SIKYLEDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNK--GSISFKKVAL 349

Query: 296 KSLGVLNLYGCSNLQRLPECLGQ---LSSPITLGLTETNIERIPESIIQHFVLRYLLLSY 352
            SL  L+L     L     C       +S   L L+      +  + +    L++L   +
Sbjct: 350 PSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408

Query: 353 SERLQSLPSP 362
           S  L+ +   
Sbjct: 409 S-TLKRVTEF 417

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 46/304 (15%), Positives = 89/304 (29%), Gaps = 73/304 (24%)

Query: 92  RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHW--------HGYPL 143
            L   +F+   +L++L            C++  ++D  +  + +L            +  
Sbjct: 46  ILKSYSFSNFSELQWLDLSR--------CEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97

Query: 144 KSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLN 203
            SF    S E LV     E  +  L                              + +L 
Sbjct: 98  GSFSGLTSLENLVAV---ETKLASL--------------------------ESFPIGQLI 128

Query: 204 KVVILNLRGSK-SLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF------- 255
            +  LN+  +      LP+   NL  L  +DLS       +  I+  ++ +L        
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN----YIQTITVNDLQFLRENPQVNL 184

Query: 256 ---LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCK-LKSLGVLNLY-----GC 306
              ++   I  +       ++L  L L       ++  +  + L  L V  L        
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 307 SNLQRLP----ECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPS 361
            NL+       E L  ++      LT TN              +  + L+    ++ L  
Sbjct: 245 RNLEIFEPSIMEGLCDVTI-DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLED 302

Query: 362 PLFL 365
               
Sbjct: 303 VPKH 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 17/173 (9%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG------NISWL 254
           L  +  L +  +  L  +    F  L  L +L L  C     L  I +        +  L
Sbjct: 127 LYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC----NLTSIPTEALSHLHGLIVL 181

Query: 255 FLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLP 313
            L    I  +     + L RL+ L++S    L ++  +     +L  L++  C NL  +P
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVP 240

Query: 314 EC-LGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
              +  L     L L+   I  I  S++   + L+ + L    +L  +    F
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAF 292

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLT 257
           RL ++ +L +     L ++         LT L ++ C  L  +P         + +L L+
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLS 256

Query: 258 GTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPE 314
              I  +  S+   LLRL+ + L   + L  +   +   L  L VLN+ G   L  L E
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 237 CS--KLKRLPEISSGNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPS-SL 292
           C   +   +PE        L L    IK L      S   LE L+L++   + ++   + 
Sbjct: 18  CHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAF 76

Query: 293 CKLKSLGVLNLYGCSNLQRLP-ECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLL 350
             L +L  L L     L+ +P      LS+   L ++E  I  + + + Q    L+ L +
Sbjct: 77  NNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 351 SYSERLQSLPSPLF 364
             +  L  +    F
Sbjct: 136 GDN-DLVYISHRAF 148

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 14/187 (7%)

Query: 195 NPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNIS-- 252
                    ++ +L+L   +          +L  L+ L L+G   ++ L   +   +S  
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSL 102

Query: 253 -WLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSL--PSSLCKLKSLGVLNLYGCSN 308
             L    T +  L    I  L  L+ L+++    ++S   P     L +L  L+L     
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-K 160

Query: 309 LQRL-PECLGQLSS----PITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPL 363
           +Q +    L  L       ++L L+   +  I     +   L  L L  +    ++    
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

Query: 364 FLARGCL 370
                 L
Sbjct: 221 IQGLAGL 227

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 4/139 (2%)

Query: 230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSL 288
                   +   ++P+    +   L L+   ++ L   S  S   L+ LDLS C+     
Sbjct: 10  ITYQCMELN-FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 289 PSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFV-LRY 347
             +   L  L  L L G             LSS   L   ETN+  +    I H   L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 348 LLLSYSERLQSLPSPLFLA 366
           L ++++  +QS   P + +
Sbjct: 129 LNVAHN-LIQSFKLPEYFS 146

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 14/167 (8%)

Query: 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG-----NISWLFLTGTAIK 262
             L  + +         +L  L  LDLS  + L      S       ++ +L L+   + 
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 263 ELPSSIESLLRLEYLDLSDCKRLKSL--PSSLCKLKSLGVLNLYGCSNLQRL-PECLGQL 319
            + S+   L +LE+LD      LK +   S    L++L  L++    + +         L
Sbjct: 387 TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGL 444

Query: 320 SSPITLGLTETNIER-IPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
           SS   L +   + +      I      L +L LS   +L+ L    F
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF 490

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 19/153 (12%)

Query: 218 SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNIS-------WLFLTGTAIKELPSSIES 270
            LP    NL  L  LDLS   K++ +       +         L L+   +  +      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 271 LLRLEYLDLSDCK-RLKSLPSSLCKLKSLGVLNLY-----GCSNLQRLPEC-LGQLSSPI 323
            +RL  L L +    L  + + +  L  L V  L         NL++  +  L  L +  
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 324 TLGLTETNIERIPESIIQHF----VLRYLLLSY 352
                   ++   + II  F     +    L  
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 195 NPTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS- 252
              +   L+ + +L + G+   ++   +IF  L  LT LDLS C +L++L   +  ++S 
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSS 495

Query: 253 --WLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSL-PSSLCKL-KSLGVLNLYG 305
              L ++      L     + L  L+ LD S    + +     L     SL  LNL  
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 552

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 20/185 (10%)

Query: 195 NPTLMPRLNKVVILNLRGSK-SLKSLPSEIF---NLEFLTKLDLSGCSKLKRLPEISSG- 249
              +   L  +  L+L  S  SL++L +E F       L  L+L+      ++ +I S  
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN----KISKIESDA 400

Query: 250 -----NISWLFLTGTAIKEL--PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLN 302
                ++  L L    I +         L  +  + LS  K L+   +S   + SL  L 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 303 LYGC--SNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSL 359
           L      N+   P     L +   L L+  NI  I + +++    L  L L ++  L  L
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARL 519

Query: 360 PSPLF 364
                
Sbjct: 520 WKHAN 524

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 19/175 (10%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG------NISWL 254
              + +LNL  ++ L+ LP+  F     LT LD+   +    + ++          +  L
Sbjct: 24  PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT----ISKLEPELCQKLPMLKVL 78

Query: 255 FLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL- 312
            L    + +L   +      L  L L      K   +   K K+L  L+L     L    
Sbjct: 79  NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTK 137

Query: 313 PECLGQLSSPITLGLTETNIERIPESIIQHFV---LRYLLLSYSERLQSLPSPLF 364
                QL +   L L+   I+ +    +  F    L+ L LS + +++      F
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCF 191

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 28/184 (15%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG------NISWL 254
           L  + +L+L  ++  + L  + +  LE + ++ LS      +  +++        ++  L
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN----KYLQLTRNSFALVPSLQRL 459

Query: 255 FLTGTAIKEL---PSSIESLLRLEYLDLSDCKRLKSLPSS-LCKLKSLGVLNLYGCSNLQ 310
            L   A+K +   PS  + L  L  LDLS+   + ++    L  L+ L +L+L    NL 
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLA 517

Query: 311 RL---------PECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLP 360
           RL            L  LS    L L     + IP  + +    L+ + L  +  L +LP
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLP 576

Query: 361 SPLF 364
           + +F
Sbjct: 577 ASVF 580

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 16/186 (8%)

Query: 192 KTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG- 249
              +         +  L+L  +  ++ + +  F   + L  LDLS    L      +   
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQ 143

Query: 250 --NISWLFLTGTAIKELPS---SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLY 304
             N+  L L+   I+ L S    I +   L+ L+LS  +  +  P     +  L  L L 
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 305 GCSNLQRLPECLG---QLSSPITLGLTETNIERIPESIIQHFV---LRYLLLSYSERLQS 358
                  L E L      +S   L L+ + +     +         L  L LSY+  L  
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNV 262

Query: 359 LPSPLF 364
           + +  F
Sbjct: 263 VGNDSF 268

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 35/203 (17%), Positives = 66/203 (32%), Gaps = 30/203 (14%)

Query: 182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKL 240
           I A+    +    N +L         L L  ++ +K      F  +  L  L L+     
Sbjct: 157 IQALKSEELDIFANSSL-------KKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 241 KRLPE-----ISSGNISWLFLTGTAIKELPSSIESLLR---LEYLDLSDCKRLKSLPSSL 292
             L E     +++ +I  L L+ + +    ++    L+   L  LDLS          S 
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 293 CKLKSLGVLNLYGC----------SNLQRLPECLGQLSSPITLGLTETNIERIPESIIQH 342
             L  L    L               L  +   L    S     ++  ++ +I +   Q 
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY-LNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 343 F-VLRYLLLSYSERLQSLPSPLF 364
              L +L +  +  +  + S +F
Sbjct: 328 LKCLEHLNMEDN-DIPGIKSNMF 349

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 50/301 (16%), Positives = 91/301 (30%), Gaps = 64/301 (21%)

Query: 92  RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHW--------HGYPL 143
           ++  + F K   L  L     S N      +S  +     +++ L               
Sbjct: 111 KIKNNPFVKQKNLITLDL---SHN-----GLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 144 KSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLN 203
           +      +   L   E+  N I++                           +P     + 
Sbjct: 163 EEL-DIFANSSLKKLELSSNQIKEF--------------------------SPGCFHAIG 195

Query: 204 KVVILNLRGSKSLKSLPSEIF---NLEFLTKLDLSGCSKLKRLPEISSG-----NISWLF 255
           ++  L L   +   SL  ++        +  L LS    L      +       N++ L 
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLD 254

Query: 256 LTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL-- 312
           L+   +  +   S   L +LEY  L           SL  L ++  LNL      Q +  
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 313 -------PECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSER-LQSLPSPL 363
                        L     L + + +I  I  ++    + L+YL LS S   L++L +  
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 364 F 364
           F
Sbjct: 375 F 375

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 24/140 (17%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIF---------NLEFLTKLDLSGCSKLKRLPEI 246
             ++  L K+ IL+L+ +  L  L               L  L  L+L        +P  
Sbjct: 497 DDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVE 554

Query: 247 SSGNIS---WLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCK--LKSLGV 300
              ++     + L    +  L  S   + + L+ L+L     + S+   +     ++L  
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL-ITSVEKKVFGPAFRNLTE 613

Query: 301 LNLYG------CSNLQRLPE 314
           L++        C ++     
Sbjct: 614 LDMRFNPFDCTCESIAWFVN 633

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 25/167 (14%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTA 260
              +  + +  +  L+ + +++F NL  L ++ +   + L  +                 
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN---------------- 96

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECL--G 317
               P + ++L  L+YL +S+   +K LP           +L++    N+  +      G
Sbjct: 97  ----PEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 318 QLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLF 364
                + L L +  I+ I  S      L  L LS +  L+ LP+ +F
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 5/139 (3%)

Query: 230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSL 288
                   SK+  +P     N   L    T ++ +          LE +++S    L+ +
Sbjct: 12  RVFLCQE-SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 289 PSS-LCKLKSLGVLNLYGCSNLQRLP-ECLGQLSSPITLGLTETNIERIPESIIQHFV-L 345
            +     L  L  + +   +NL  +  E    L +   L ++ T I+ +P+    H +  
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130

Query: 346 RYLLLSYSERLQSLPSPLF 364
             L +  +  + ++    F
Sbjct: 131 VLLDIQDNINIHTIERNSF 149

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 31/171 (18%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEIS----SGNISWLFL 256
           L  +  L +  +  +K LP     +      LD+     +  +   S    S     L+L
Sbjct: 103 LPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161

Query: 257 TGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECL 316
               I+E+ +S  +  +L+ L+LSD   L+ LP                        +  
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP-----------------------NDVF 198

Query: 317 GQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLAR 367
              S P+ L ++ T I  +P   +++  L+ L    +  L+ LP+   L  
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLEN--LKKLRARSTYNLKKLPTLEKLVA 247

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 45/215 (20%), Positives = 73/215 (33%), Gaps = 60/215 (27%)

Query: 93  LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSA 152
           +NP  F  +P L++L                 + + G   +        P      +L  
Sbjct: 95  INPEAFQNLPNLQYL----------------LISNTGIKHL--------PDVHKIHSLQK 130

Query: 153 EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG 212
             L + +                   N  IH +            L       VIL L  
Sbjct: 131 VLLDIQD-------------------NINIHTIERNSFVG-----LSFES---VILWLNK 163

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLTGTAIKELPSSI- 268
           +  ++ + +  FN   L +L+LS  + L+ LP      +     L ++ T I  LPS   
Sbjct: 164 NG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222

Query: 269 ESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNL 303
           E+L +L          LK LP +L KL +L   +L
Sbjct: 223 ENLKKLRARSTY---NLKKLP-TLEKLVALMEASL 253

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 8e-11
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 12/157 (7%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLTGTAIKELPSSIE 269
            ++L +LP ++      T L LS  + L        +    ++ L L    + +L     
Sbjct: 19  KRNLTALPPDLPKD--TTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-G 74

Query: 270 SLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE-CLGQLSSPITLGLT 328
           +L  L  LDLS   +L+SLP     L +L VL++     L  LP   L  L     L L 
Sbjct: 75  TLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132

Query: 329 ETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
              ++ +P  ++     L  L L+ +  L  LP+ L 
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLL 168

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 18/167 (10%)

Query: 207 ILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKEL 264
           IL+L  +  L +           LT+L+L    +L +L    +   +  L L+   ++ L
Sbjct: 35  ILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 265 PSSIESLLRLEYLDLSDCKRLKSLPSSL-CKLKSLGVLNLYGCSN-LQRLPE----CLGQ 318
           P   ++L  L  LD+S  + L SLP      L  L  L L G  N L+ LP        +
Sbjct: 93  PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPK 149

Query: 319 LSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
           L     L L   N+  +P  ++     L  LLL     L ++P   F
Sbjct: 150 LE---KLSLANNNLTELPAGLLNGLENLDTLLLQ-ENSLYTIPKGFF 192

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPE---ISSGNI 251
           P L   L  + +L++  ++ L SLP      L  L +L L G ++LK LP      +  +
Sbjct: 93  PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKL 150

Query: 252 SWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG 305
             L L    + ELP+ +   L  L+ L L +   L ++P        L    L+G
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 7/141 (4%)

Query: 218 SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIK-ELPSSIESLLR-LE 275
                I     L  L++S    +  +P +   ++ +L L       E+P  +      L 
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 276 YLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQ-RLP-ECLGQLSSPITLGLTETNIE 333
            LDLS      ++P        L  L L    N    LP + L ++     L L+     
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 334 -RIPESIIQ-HFVLRYLLLSY 352
             +PES+      L  L LS 
Sbjct: 357 GELPESLTNLSASLLTLDLSS 377

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 33/188 (17%)

Query: 194 PNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNIS 252
               L     ++  L + G+K    +   +     L  LD+S  +    +P +     + 
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226

Query: 253 WLFLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG------ 305
            L ++G  +  +   +I +   L+ L++S  + +  +P     LKSL  L+L        
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE 284

Query: 306 --------CSNLQRL-----------PECLGQLSSPITLGLTETNIE-RIPESIIQHFV- 344
                   C  L  L           P   G  S   +L L+  N    +P   +     
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 345 LRYLLLSY 352
           L+ L LS+
Sbjct: 345 LKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 14/162 (8%)

Query: 203 NKVVILNLRG---SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTG 258
           +KV  ++L     +    ++ S + +L  L  L LS       +       +++ L L+ 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 259 TAIK-ELPS--SIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYGCS---NLQR 311
            ++   + +  S+ S   L++L++S          S   KL SL VL+L   S       
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 312 LPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSY 352
                        L ++   I   +  S   +  L +L +S 
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVN--LEFLDVSS 209

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 19/148 (12%)

Query: 218 SLPSEIFNL-EFLTKLDLSGC----SKLKRLPEISSGNISWLFL-----TGTAIKELPSS 267
            LP  + NL   L  LDLS        L  L +     +  L+L     TG    ++P +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG----KIPPT 413

Query: 268 IESLLRLEYLDLSDCKRLK-SLPSSLCKLKSLGVLNLYGCSNLQ-RLPECLGQLSSPITL 325
           + +   L  L LS    L  ++PSSL  L  L  L L+    L+  +P+ L  + +  TL
Sbjct: 414 LSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETL 471

Query: 326 GLTETNIE-RIPESIIQHFVLRYLLLSY 352
            L   ++   IP  +     L ++ LS 
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSN 499

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 45/189 (23%), Positives = 68/189 (35%), Gaps = 32/189 (16%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNIS--- 252
             L    + +  L+L G+    ++P    +   L  L LS  +    LP  +   +    
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346

Query: 253 WLFLTGTAIK-ELPSSIESLL-RLEYLDLSDCKRLKSLPSSLCK--LKSLGVLNLYG--- 305
            L L+      ELP S+ +L   L  LDLS       +  +LC+    +L  L L     
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 306 ----------CSNLQRL-----------PECLGQLSSPITLGLTETNIE-RIPESIIQHF 343
                     CS L  L           P  LG LS    L L    +E  IP+ ++   
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466

Query: 344 VLRYLLLSY 352
            L  L+L +
Sbjct: 467 TLETLILDF 475

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 7e-09
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 50/173 (28%)

Query: 218 SLPSEIFNLEFLTKLDLSG-------------CSKLKRLPEISSGNISWLFLTGTAIKEL 264
           ++PS + +L  L  L L                  L+ L  I   N     LTG    E+
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL--ILDFN----DLTG----EI 482

Query: 265 PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG-------------CSNLQR 311
           PS + +   L ++ LS+ +    +P  + +L++L +L L               C +L  
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542

Query: 312 L-----------PECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYS 353
           L           P  + + S  I               I    + +    + +
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---RYVYIKNDGMKKECHGAGN 592

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 38/226 (16%)

Query: 95  PSTFTKMPKLRFLKFYSSSFNGE---NKCKMSYLQDPGFAEVKYLHWHGYPLK-SFPSNL 150
           P    ++  L  LK  ++SF+G           L         +L  +      + P+ +
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI--------WLDLNTNLFNGTIPAAM 558

Query: 151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL 210
             +   +     N I            + +  H   + L  +      + RL+     N+
Sbjct: 559 FKQSGKIAA---NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615

Query: 211 RGSKSLKSLPSEIFNLEFLTKLDLSG-------------CSKLKRLPEISSGNISWLFLT 257
                         N   +  LD+S                 L  L      N+    ++
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL------NLGHNDIS 669

Query: 258 GTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNL 303
           G     +P  +  L  L  LDLS  K    +P ++  L  L  ++L
Sbjct: 670 G----SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 20/133 (15%)

Query: 218 SLPSEIFNLEFLTKLDLSGC-------SKLKRLPEISSGNISWLFLTGTAIKELPSSIES 270
               ++  L      +++                 +   ++S+  L+G     +P  I S
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG----YIPKEIGS 654

Query: 271 LLRLEYLDLSDCKRLK-SLPSSLCKLKSLGVLNLYGCS--NLQ-RLPECLGQLSSPITLG 326
           +  L  L+L     +  S+P  +  L+ L +L+L   S   L  R+P+ +  L+    + 
Sbjct: 655 MPYLFILNLG-HNDISGSIPDEVGDLRGLNILDL---SSNKLDGRIPQAMSALTMLTEID 710

Query: 327 LTETNIE-RIPES 338
           L+  N+   IPE 
Sbjct: 711 LSNNNLSGPIPEM 723

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 31/179 (17%), Positives = 69/179 (38%), Gaps = 15/179 (8%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPE---ISSGNI 251
           P+L P       L L  +  L+++PS  F NL  ++++ +S    L++L      +   +
Sbjct: 27  PSLPPSTQT---LKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 252 SWLFLTGT-AIKELPSSI-ESLLRLEYLDLSDCKRLKSLP--SSLCKLKSLGVLNLYGCS 307
           + + +  T  +  +     + L  L++L + +   LK  P  + +       +L +    
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 308 NLQRLPECL--GQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLF 364
            +  +P     G  +  +TL L       +         L  + L+ ++ L  +    F
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 35/146 (23%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLP---------------- 244
           L+KV  + +R +++L  +  +    L  L  L +     LK  P                
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEI 137

Query: 245 -------EISSGNIS-------WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS 290
                   I              L L       +     +  +L+ + L+  K L  +  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 291 -SLCKLKS-LGVLNLYGCSNLQRLPE 314
            +   + S   +L++    ++  LP 
Sbjct: 198 DAFGGVYSGPSLLDVSQT-SVTALPS 222

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 12/159 (7%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLTGTAIKELPSSI- 268
            + L+++P  I       ++ L G +++  +P     +  N++ L+L    +  + ++  
Sbjct: 20  QQGLQAVPVGIP--AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 269 ESLLRLEYLDLSDCKRLKSLPSS-LCKLKSLGVLNLYGCSNLQRLPE-CLGQLSSPITLG 326
             L  LE LDLSD  +L+S+  +    L  L  L+L  C  LQ L       L++   L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLY 135

Query: 327 LTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
           L +  ++ +P+   +    L +L L  + R+ S+P   F
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAF 173

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 17/161 (10%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG------NISWL 254
           L  +  L+L  +  L+S+    F  L  L  L L  C     L E+  G       + +L
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC----GLQELGPGLFRGLAALQYL 134

Query: 255 FLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRL 312
           +L   A++ LP      L  L +L L    R+ S+P  +   L SL  L L+    +  +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHV 192

Query: 313 PE-CLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLS 351
                  L   +TL L   N+  +P   +     L+YL L+
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 57/322 (17%), Positives = 98/322 (30%), Gaps = 39/322 (12%)

Query: 69  LTYNTGTEKIEGICLDMSKVKEFRLN--------PSTFTKMPKLRFLKFYSSSFNGENKC 120
           LT N      E        +K                      L  L       N     
Sbjct: 88  LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL---GSN----- 139

Query: 121 KMSYLQDPGFAE---VKYLHWHGYPLKSFP----SNLSAEKLVLFEVPENDIEQLWDCVK 173
            +S ++ P       +K L +    +        S+L     +   +  NDI  +     
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 174 HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEF---LT 230
             +    +       L+           +  + +         + +   +F       + 
Sbjct: 200 DSAVFQSLNFGGTQNLL-VIFKGLKNSTIQSLWLGTFEDM-DDEDISPAVFEGLCEMSVE 257

Query: 231 KLDLSGCSKLKRLPEISSGNIS---WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKS 287
            ++L        +   +    S    L LT T + ELPS +  L  L+ L LS   + ++
Sbjct: 258 SINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFEN 315

Query: 288 LPS-SLCKLKSLGVLNLYGCSNLQRL-PECLGQLSSPITLGLTETNIERIPESIIQHFV- 344
           L   S     SL  L++ G +    L   CL  L +   L L+  +IE      +Q    
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 345 --LRYLLLSYSERLQSLPSPLF 364
             L+ L LSY+    SL +  F
Sbjct: 376 SHLQSLNLSYN-EPLSLKTEAF 396

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 4/135 (2%)

Query: 232 LDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPS 290
            +      L  +P     +   L  +   +  +  ++   L+ L +LDL+ C+       
Sbjct: 17  YNCENLG-LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLL 349
           +      L  L L     +      L    +   L   +T I  I    + +   L  L 
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 350 LSYSERLQSLPSPLF 364
           L  +  + S+  P  
Sbjct: 136 LGSN-HISSIKLPKG 149

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 54/328 (16%), Positives = 99/328 (30%), Gaps = 62/328 (18%)

Query: 83  LDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYP 142
              ++           + +  L    F        +      L +     V+ ++   + 
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM---SVESINLQKHY 265

Query: 143 LKSFPSNLSA--EKLVLFEVPENDIEQLWDCVKHYSKL-------NQIIHAVCHRLIAKT 193
             +  SN       L   ++    + +L   +   S L       N+           + 
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF----------EN 315

Query: 194 PNPTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISS---- 248
                      +  L+++G+     L +    NLE L +LDLS    ++     +     
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRN 374

Query: 249 -GNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSL--PSSLCKLKSLGVLNLY 304
             ++  L L+      L + + +   +LE LDL+   RLK     S    L  L VLNL 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLS 433

Query: 305 -------------GCSNLQRL--------------PECLGQLSSPITLGLTETNIERIPE 337
                        G   LQ L                 L  L     L L+  ++  I +
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 338 SIIQHFV-LRYLLLSYSERLQSLPSPLF 364
                   + ++ LS++ RL S      
Sbjct: 494 HAFTSLKMMNHVDLSHN-RLTSSSIEAL 520

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 24/198 (12%), Positives = 52/198 (26%), Gaps = 38/198 (19%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLT 257
            +++  L L  +  L  +        + L  L       +  +  I       +  L+L 
Sbjct: 80  QHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLG 137

Query: 258 GTAIKELP-SSIESLLRLEYLDLSDCK-------------------------RLKSLPSS 291
              I  +         +L+ LD  +                            +  +   
Sbjct: 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197

Query: 292 LCKLKSLGVLNLYGCSNLQRLPECLG--QLSSPITLGLTETNIERIPESIIQHFV---LR 346
                    LN  G  NL  + + L    + S       + + E I  ++ +      + 
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 347 YLLLSYSERLQSLPSPLF 364
            + L       ++ S  F
Sbjct: 258 SINLQKH-YFFNISSNTF 274

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 45/291 (15%), Positives = 84/291 (28%), Gaps = 59/291 (20%)

Query: 93  LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHW---HGYPLKSFP-- 147
           +  +TF+++  L FL            C++ ++ +  F     L        PL      
Sbjct: 48  IQNTTFSRLINLTFLDLTR--------CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99

Query: 148 --SNLSA-EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK 204
             S   A + L      +  I  +                          +   +     
Sbjct: 100 ALSGPKALKHLFFI---QTGISSI--------------------------DFIPLHNQKT 130

Query: 205 VVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS-----WLFLTG 258
           +  L L  +  + S+        E L  LD      +  L +    ++       L L G
Sbjct: 131 LESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 259 TAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSL--CKLKSLGVLNLYGCSNLQRLPECL 316
             I  +          + L+    + L  +   L    ++SL +       +    P   
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 317 GQLS--SPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
             L   S  ++ L +     I  +    F  L+ L L+ +  L  LPS L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLV 298

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 15/156 (9%)

Query: 207 ILNLRGSKSLKSLPSEIF--NLEFLTKLDLSGCSKLKRLPEISSGNIS---WLFLTGTAI 261
           +L+L  ++ LK   ++    NL  L  L+LS    L    E     +     L L G   
Sbjct: 404 LLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 262 KEL----PSSIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECL 316
            +      +S+++L RLE L LS C  L S+   +   LK +  ++L     L       
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEA 519

Query: 317 GQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLS 351
                 I L L   +I  I  S++      R + L 
Sbjct: 520 LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 195 NPTLMPRLNKVVILNLRG---SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNI 251
           +  L   L  +  LNL+G    K      + +  L  L  L LS C  L  + + +  ++
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSL 499

Query: 252 S---WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG 305
                + L+   +        S L+  YL+L+       LPS L  L     +NL  
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQ 556

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 49/287 (17%), Positives = 93/287 (32%), Gaps = 23/287 (8%)

Query: 91  FRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYL---HWHGYPLKSFP 147
             +  +    +  L   +     F  E    +          +  L    +    L  + 
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGN--LEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 148 SNLSAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVV 206
            ++      L  V    +  +  + VK +S      H               +  L ++ 
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 207 ILNLRGSKSLKSLPSEIFNLEFLTKLDLSGC--SKLKRLPEISSG--NISWLFLTGTAIK 262
             + +      +  SE+ +L  L  LDLS    S      +   G  ++ +L L+   + 
Sbjct: 332 FTSNK----GGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 263 ELPSSIESLLRLEYLDLSDCKRLKSLP--SSLCKLKSLGVLNLYGCSNLQRLP-ECLGQL 319
            + S+   L +LE+LD      LK +   S    L++L  L++    + +         L
Sbjct: 387 TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGL 444

Query: 320 SSPITLGLTETNI-ERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
           SS   L +   +  E     I      L +L LS   +L+ L    F
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF 490

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSL 288
                       ++P+    +   L L+   ++ L S S  S   L+ LDLS C+ ++++
Sbjct: 10  ITYQCME-LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTI 67

Query: 289 PSSLC-KLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFV-LR 346
                  L  L  L L G             LSS   L   ETN+  +    I H   L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 347 YLLLSYSERLQSLPSPLFLA 366
            L ++++  +QS   P + +
Sbjct: 128 ELNVAHN-LIQSFKLPEYFS 146

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 190 IAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCS-KLKRLPEIS 247
           + +    ++   L  ++ L++  +   +   + IF  L  L  L ++G S +   LP+I 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 248 SG--NISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSS-LCKLKSLGVLNL 303
           +   N+++L L+   +++L  +   SL  L+ L+++   +LKS+P     +L SL  + L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWL 525

Query: 304 YG 305
           + 
Sbjct: 526 HT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 21/183 (11%)

Query: 202 LNKVVILNLRGSKSLKSL--PSEIFNLEFLTKLDLSG-------CSKLKRLPEISSGNIS 252
           L  +  LN+  +  ++S   P    NL  L  LDLS        C+ L+ L ++   N+S
Sbjct: 123 LKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 253 WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLC-KLKSLGVLNLY-----GC 306
            L L+   +  +       +RL  L L +     ++  +    L  L V  L        
Sbjct: 182 -LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 307 SNLQRLPE-CLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYS---ERLQSLPSP 362
            NL++  +  L  L +          ++   + II  F     + S+S     ++ +   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 363 LFL 365
            + 
Sbjct: 301 SYN 303

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 18/169 (10%)

Query: 208 LNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG------NISWLFLTGTA 260
           L L  +K L+SLP  +F  L  LTKL LS    L       S       ++ +L L+   
Sbjct: 33  LELESNK-LQSLPHGVFDKLTQLTKLSLSSN-GLSFKG-CCSQSDFGTTSLKYLDLSFNG 89

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSS--LCKLKSLGVLNLYGCSNLQRLPE-CLG 317
           +  + S+   L +LE+LD      LK +        L++L  L++    + +        
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFN 147

Query: 318 QLSSPITLGLTE-TNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
            LSS   L +   +  E     I      L +L LS   +L+ L    F
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF 195

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCK-RLKS 287
           T++  +    L  +P     + + L L    ++ LP  + + L +L  L LS      K 
Sbjct: 10  TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 288 LPS-SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFV- 344
             S S     SL  L+L     +  +      L     L    +N++++ E S+      
Sbjct: 69  CCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 345 LRYLLLSYSERLQSLPSPLF 364
           L YL +S++   +   + +F
Sbjct: 128 LIYLDISHT-HTRVAFNGIF 146

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 42/200 (21%)

Query: 188 RLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS 247
            L  K            +  L+L  +  + ++ S    LE L  LD      LK++ E S
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFS 120

Query: 248 S----GNISWLFLTGTAIKELPSSI-ESLLRLEYLDLS--------------DCKRLKSL 288
                 N+ +L ++ T  +   + I   L  LE L ++              + + L  L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 289 -----------PSSLCKLKSLGVLNLYGCSNLQRLP----ECLGQLSSPITLGLTETNIE 333
                      P++   L SL VLN+    N   L     +CL  L     L  +  +I 
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQ---VLDYSLNHIM 236

Query: 334 RIPESIIQHFV--LRYLLLS 351
              +  +QHF   L +L L+
Sbjct: 237 TSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS---WLFLT 257
           L+ + +L + G+   ++   +IF  L  LT LDLS C +L++L   +  ++S    L ++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS 207

Query: 258 GTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCK--LKSLGVLNLYG 305
                 L +   + L  L+ LD S    + +      +    SL  LNL  
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 221 SEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLS 280
           S +     + +LD S    +  +    +  ++ L L    + +    + +   L  +DLS
Sbjct: 205 STLAIPIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLS 262

Query: 281 DCKRLKSLP-SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESI 339
               L+ +      K++ L  L +   + L  L      + +   L L+  ++  +  + 
Sbjct: 263 YN-ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ 320

Query: 340 IQHFVLRYLLLSYSERLQSLPSPLF 364
            Q   L  L L ++  + +L     
Sbjct: 321 PQFDRLENLYLDHN-SIVTLKLSTH 344

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 5e-09
 Identities = 38/245 (15%), Positives = 85/245 (34%), Gaps = 48/245 (19%)

Query: 92  RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLS 151
           R+   TF     L+ L+  S         +++++       + + +     L +    ++
Sbjct: 161 RIEDDTFQATTSLQNLQLSS--------NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 212

Query: 152 AEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRL---------IAKTPNPTLMPRL 202
            E+L                   ++ +N +   V   L         +  T      P L
Sbjct: 213 VEELDA----------------SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL 256

Query: 203 NKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLTGT 259
            +   ++L  ++ L+ +    F  ++ L +L +S  ++L  L         +  L L+  
Sbjct: 257 VE---VDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN 311

Query: 260 AIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG----CSNLQRLPEC 315
            +  +  +     RLE L L     + +L  S     +L  L L      C++L+ L   
Sbjct: 312 HLLHVERNQPQFDRLENLYLDHN-SIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRN 368

Query: 316 LGQLS 320
           + + +
Sbjct: 369 VARPA 373

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 11/193 (5%)

Query: 179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCS 238
            Q  + V  R        + +        +++           E   L     +      
Sbjct: 3   GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS- 61

Query: 239 KLKRLPE---ISSGNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSS-LC 293
            +++LP     S   +  L L    I+E+ +        ++ L +     ++ LP     
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQ 120

Query: 294 KLKSLGVLNLYGCSNLQRLP-ECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLS 351
            +  L VL L    +L  LP           TL ++  N+ERI +   Q    L+ L LS
Sbjct: 121 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 352 YSERLQSLPSPLF 364
            + RL  +   L 
Sbjct: 180 SN-RLTHVDLSLI 191

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 38/245 (15%), Positives = 85/245 (34%), Gaps = 48/245 (19%)

Query: 92  RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLS 151
           R+   TF     L+ L+  S         +++++       + + +     L +    ++
Sbjct: 155 RIEDDTFQATTSLQNLQLSS--------NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206

Query: 152 AEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRL---------IAKTPNPTLMPRL 202
            E+L                   ++ +N +   V   L         +  T      P L
Sbjct: 207 VEELDA----------------SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL 250

Query: 203 NKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLTGT 259
            +   ++L  ++ L+ +    F  ++ L +L +S  ++L  L         +  L L+  
Sbjct: 251 VE---VDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN 305

Query: 260 AIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG----CSNLQRLPEC 315
            +  +  +     RLE L L     + +L  S     +L  L L      C++L+ L   
Sbjct: 306 HLLHVERNQPQFDRLENLYLDHN-SIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRN 362

Query: 316 LGQLS 320
           + + +
Sbjct: 363 VARPA 367

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 24/187 (12%), Positives = 55/187 (29%), Gaps = 33/187 (17%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGT 259
              K+  L++  +  L+ +  + F     L  L LS   +L  +      ++    ++  
Sbjct: 139 NTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYN 196

Query: 260 AIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLY-----------GCSN 308
            +  L       + +E LD S    +  +   +     L +L L                
Sbjct: 197 LLSTLAI----PIAVEELDASHN-SINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPG 249

Query: 309 LQRL-----------PECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ 357
           L  +                ++     L ++   +  +         L+ L LS++  L 
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLL 308

Query: 358 SLPSPLF 364
            +     
Sbjct: 309 HVERNQP 315

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 11/164 (6%)

Query: 208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLTGTAIKEL 264
           +++           E   L     +       +++LP     S   +  L L    I+E+
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEI 84

Query: 265 PSSI-ESLLRLEYLDLSDCKRLKSLPSS-LCKLKSLGVLNLYGCSNLQRLP-ECLGQLSS 321
            +        ++ L +     ++ LP      +  L VL L    +L  LP         
Sbjct: 85  DTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPK 142

Query: 322 PITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
             TL ++  N+ERI +   Q    L+ L LS + RL  +   L 
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLI 185

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 45/286 (15%)

Query: 93  LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFA---EVKYLHWHGYPLKSFPSN 149
           ++   F     ++ L      FN      + YL    F     +  L      L S P  
Sbjct: 84  IDTYAFAYAHTIQKLYM---GFN-----AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 150 L--SAEKLVLFEVPENDIEQL-WDCVKHYSKL-------NQIIHAVCHRLIAKTPNPTLM 199
           +  +  KL    +  N++E++  D  +  + L       N++ H           + +L+
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLI 185

Query: 200 PRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGT 259
           P L      N+  +  L +L         + +LD S    +  +    +  ++ L L   
Sbjct: 186 PSLFH---ANVSYNL-LSTLA----IPIAVEELDASHN-SINVVRGPVNVELTILKLQHN 236

Query: 260 AIKELPSSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYGCSNLQRLPECLGQ 318
            + +    + +   L  +DLS    L+ +      K++ L  L +   + L  L      
Sbjct: 237 NLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQP 293

Query: 319 LSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLF 364
           + +   L L+  ++  +  +  Q   L  L L ++  + +L     
Sbjct: 294 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTH 338

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 24/157 (15%), Positives = 63/157 (40%), Gaps = 9/157 (5%)

Query: 214 KSLKSLPSEIFNLEFLT--KLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSI-ES 270
              K + S +          +D+          +I+  N   +    + +++LP+++ +S
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 271 LLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPE-CLGQLSSPITLGLT 328
             ++E L+L+D + ++ + + +     ++  L +     ++ LP      +     L L 
Sbjct: 68  FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLE 125

Query: 329 ETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
             ++  +P  I  +   L  L +S +  L+ +    F
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTF 161

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 42/269 (15%), Positives = 84/269 (31%), Gaps = 78/269 (28%)

Query: 144 KSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAV---CHRLIAKTPNPTLMP 200
           K + + L    LVL  V         +         +  +A    C +++  T    +  
Sbjct: 241 KPYENCL----LVLLNV--------QN--------AKAWNAFNLSC-KILLTTRFKQVTD 279

Query: 201 RLNKVVILNLRGSKSLKSL-PSEIFNLEFLTKLDLSGCSKLKRLP-EISSGNISWLFLTG 258
            L+     ++       +L P E+ +L  L  LD     + + LP E+ + N   L +  
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDC----RPQDLPREVLTTNPRRLSIIA 334

Query: 259 TAIKELPSSIESLLRLEYLDLSDCKRLKS-LPSSLCKLKSLGVLNLYGCSNLQRLPECLG 317
            +I++  +        +     +C +L + + SSL  L+      ++    L   P    
Sbjct: 335 ESIRDGLA------TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFPP--- 383

Query: 318 QLSSPITLGLTET----NIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQ 373
             S+ I   L        I+     ++       L+    +                   
Sbjct: 384 --SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK------------------- 422

Query: 374 PFLGIVEHTHRIPHIDHMLALDWQKKRKN 402
                 E T  I      + L+ + K +N
Sbjct: 423 ------ESTISI----PSIYLELKVKLEN 441

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 57/409 (13%), Positives = 119/409 (29%), Gaps = 100/409 (24%)

Query: 31  KIRMHDLLQELGREIVRQESINPGNRSRL-----WHHEDIYE--------VLTYNTGTEK 77
           K+R+H +  EL R +++ +   P     L      + +            + T       
Sbjct: 224 KLRIHSIQAEL-RRLLKSK---PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 78  IEGICLDMSKVKEFRLN--PSTFTKMPKLR-FLKFYSSSFNG--ENKCKMSYLQDPGFAE 132
                L  +      L+    T T        LK+               +  +    AE
Sbjct: 280 F----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 133 VK---YLHWHGYP----------LKSFPSNLSA-------EKLVLFE----VPENDIEQL 168
                   W  +           ++S  + L         ++L +F     +P   +  +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 169 WDCVKHYSKLNQIIHAVCHR--LIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFN- 225
           W  V        ++    H+  L+ K P  + +  +  + +      ++  +L   I + 
Sbjct: 396 WFDVIKSDV--MVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDH 452

Query: 226 LEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKR 284
                  D          P           + G  +K +      +L R+ +LD    ++
Sbjct: 453 YNIPKTFDSDDLI-----PPYLDQYFYS-HI-GHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL---SSPITLGLTETNIERIPESIIQ 341
                    K++          +    +   L QL      I     +   ER+  +I+ 
Sbjct: 506 ---------KIRHDS----TAWNASGSILNTLQQLKFYKPYIC--DNDPKYERLVNAIL- 549

Query: 342 HFVLRY---LLLS-YSERLQSLPSPLFLARGCLA-MQPFLGIVEHTHRI 385
            F+ +    L+ S Y++ L+            +A M     I E  H+ 
Sbjct: 550 DFLPKIEENLICSKYTDLLR------------IALMAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 69/465 (14%), Positives = 123/465 (26%), Gaps = 167/465 (35%)

Query: 28  SYNKIRMH-------DL----LQELGREIVRQESINPGNRSRLWHHEDIYEVLTYNTGTE 76
            Y  I          +     +Q++ + I+ +E I           + I       +GT 
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-----------DHIIMSKDAVSGTL 65

Query: 77  KIEGICLDMSK--VKEF---RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFA 131
           ++    L   +  V++F    L  +           KF  S    E +        P   
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRIN----------YKFLMSPIKTEQR-------QPSMM 108

Query: 132 EVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLN----QIIHAVCH 187
              Y+                             ++L++  + ++K N    Q    +  
Sbjct: 109 TRMYIEQR--------------------------DRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 188 RLIAKTPNPTL----MPRLNK--VVILNLRGSKSLKSLPSEIF---------------NL 226
            L+   P   +    +    K  V +      K    +  +IF                L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 227 E-FLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL---PSSIESLLRL-------- 274
           +  L ++D +  S+      I    I  +      ++ L         LL L        
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKL-RIHSI---QAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 275 -EYLDLSDCK----------------------RLKSLPSSLCKLKSLGVLNLY-GCSNLQ 310
               +LS CK                       L     +L   +   +L  Y  C   Q
Sbjct: 259 WNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQ 316

Query: 311 RLPE--CLGQLSSPITLGLTETNIERIPESIIQHFVL--RYLLLSYSER-------LQSL 359
            LP         +P  L +       I ESI         +  ++  +        L  L
Sbjct: 317 DLPREVLTT---NPRRLSI-------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 360 PSPLFLARGCLAMQPFLGI-VEHTHRIPHIDHMLALDWQKKRKNV 403
               +  R        L +     H IP    +L+L W    K+ 
Sbjct: 367 EPAEY--RKMFDR---LSVFPPSAH-IP--TILLSLIWFDVIKSD 403

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 64/274 (23%)

Query: 83  LDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYP 142
           L + +   F    + ++ + K++ +   +S        K+  +       +K L +    
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENS--------KVFLVPCSFSQHLKSLEF---- 338

Query: 143 LKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRL 202
           L     +LS                           N ++         K   P+L    
Sbjct: 339 L-----DLSE--------------------------NLMVEEYLKNSACKGAWPSLQ--- 364

Query: 203 NKVVILNLRGSK--SLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLTG 258
                L L  +   S++     +  L+ LT LD+S       +P+       + +L L+ 
Sbjct: 365 ----TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSS 419

Query: 259 TAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQ 318
           T I+ + + I     LE LD+S+   L S    L +L+    L +     L+ LP+    
Sbjct: 420 TGIRVVKTCI--PQTLEVLDVSNN-NLDSFSLFLPRLQ---ELYISRN-KLKTLPDA-SL 471

Query: 319 LSSPITLGLTETNIERIPESIIQHFV-LRYLLLS 351
               + + ++   ++ +P+ I      L+ + L 
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 32/172 (18%), Positives = 73/172 (42%), Gaps = 18/172 (10%)

Query: 201 RLNKVVILNLRG---SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-----GNIS 252
            L  +  L+L      +      +       L  L LS    L+ + +         N++
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLT 390

Query: 253 WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL 312
            L ++      +P S +   ++ +L+LS    ++ + +  C  ++L VL++    NL   
Sbjct: 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT--CIPQTLEVLDVSNN-NLDSF 446

Query: 313 PECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLF 364
              L +L     L ++   ++ +P++ +   VL  + +S + +L+S+P  +F
Sbjct: 447 SLFLPRLQ---ELYISRNKLKTLPDASLFP-VLLVMKISRN-QLKSVPDGIF 493

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 10/161 (6%)

Query: 202 LNKVVILNLRGSKSLKSLP--SEIFNLEFLTKLDLSGCSKLKRLPEISSGNIS---WLFL 256
           L+ +  LNL G+   ++L   S   NL  L  L +        +  I    ++    L +
Sbjct: 97  LSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 257 TGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS--NLQRLP 313
              +++   S S++S+  + +L L   +    L      L S+  L L   +    Q  P
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 314 ECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSE 354
             + ++SSP+   L         ES  +   L   +L  SE
Sbjct: 216 LPVDEVSSPMKK-LAFRGSVLTDESFNELLKLLRYILELSE 255

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 46/311 (14%), Positives = 84/311 (27%), Gaps = 64/311 (20%)

Query: 83  LDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHW---H 139
           LD+S  K   +          L+ L   S         +++ ++   F  +  L      
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKS--------SRINTIEGDAFYSLGSLEHLDLS 82

Query: 140 GYPLKSFPSNL--SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPT 197
              L S  S+       L    +  N  + L                            +
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL-------------------------GVTS 117

Query: 198 LMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG---NISW 253
           L P L  +  L +   ++   +    F  L  L +L++     L+     S     +I  
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHH 176

Query: 254 LFLTGTAIKELPSSIESLLR-LEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSN---- 308
           L L  +    L      +L  + YL+L D    +   S L   +    +           
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 309 ------LQRLPECLGQLSSPITLGLTETNIERIPESIIQHF---------VLRYLLLSYS 353
                 L +L   + +LS       T   +     S               +R L +   
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 354 ERLQSLPSPLF 364
             L    S ++
Sbjct: 297 -YLFYDLSTVY 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 6/156 (3%)

Query: 202 LNKVVILNLRGSK-SLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTA 260
           L  +  + + G+           F+   L  L +S   KL  +P+     ++ L L    
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLPETLNELHLDHNK 204

Query: 261 IKELPS-SIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECLGQ 318
           I+ +    +    +L  L L   + ++ + + SL  L +L  L+L     L R+P  L  
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPD 262

Query: 319 LSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSE 354
           L     + L   NI ++  +             Y+ 
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 228 FLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLK 286
            L  +  S    LK +P+  S + + L L    I EL     + L  L  L L + K + 
Sbjct: 34  HLRVVQCSD-LGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-IS 91

Query: 287 SLPS-SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFV- 344
            +   +   L+ L  L +   ++L  +P      SS + L + +  I ++P+ +      
Sbjct: 92  KIHEKAFSPLRKLQKLYISK-NHLVEIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 345 LRYLLLSY 352
           +  + +  
Sbjct: 149 MNCIEMGG 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 14/109 (12%)

Query: 208 LNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLTGTAIKE 263
           L+L  +K ++++  E       L +L L    +++ +          +  L L    +  
Sbjct: 198 LHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSR 255

Query: 264 LPSSIESLLRLEYLDLSDCKRLKSLPSS-------LCKLKSLGVLNLYG 305
           +P+ +  L  L+ + L     +  +  +         K      ++L+ 
Sbjct: 256 VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 30/175 (17%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 202 LNKVVILNLRGSK-SLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGT 259
           LN+++++ L  +      + +  F  ++ L+ + ++    +  +P+    +++ L L G 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGN 202

Query: 260 AIKELPS-SIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECLG 317
            I ++ + S++ L  L  L LS    + ++ + SL     L  L+L     L ++P  L 
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLA 260

Query: 318 QLSSPITLGLTETNIERIPESIIQHFV-------LRYLLLSYSE-RLQSLPSPLF 364
                  + L   NI  I  +                + L  +  +   +    F
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 12/168 (7%)

Query: 216 LKSLPSEIF-NLEFLTKLDLSG-CSKLKRLPE---ISSGNISWLFLTGTAIKELPSSIES 270
           +  +   +F  L  +  ++L     K   +          +S++ +  T I  +P  +  
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-- 190

Query: 271 LLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPE-CLGQLSSPITLGLT 328
              L  L L    ++  + + SL  L +L  L L    ++  +    L        L L 
Sbjct: 191 PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLN 248

Query: 329 ETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFL 376
              + ++P  +  H  ++ + L  +  + ++ S  F   G    +   
Sbjct: 249 NNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASY 295

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 35/189 (18%)

Query: 205 VVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGC-------------SKLK-------RL 243
             +L+L+ +K +  +    F NL+ L  L L                 KL+       +L
Sbjct: 54  TALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 244 PEISSG---NISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSL---PSSLCKLK 296
            E+       +  L +    I ++  S+   L ++  ++L     LKS      +   +K
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMK 171

Query: 297 SLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHF-VLRYLLLSYSER 355
            L  + +    N+  +P+  G   S   L L    I ++  + ++    L  L LS++  
Sbjct: 172 KLSYIRIADT-NITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-S 227

Query: 356 LQSLPSPLF 364
           + ++ +   
Sbjct: 228 ISAVDNGSL 236

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 228 FLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLK 286
            L  +  S    L+++P+    + + L L    I E+     ++L  L  L L + K + 
Sbjct: 32  HLRVVQCSD-LGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-IS 89

Query: 287 SL-PSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFV- 344
            + P +   L  L  L L   + L+ LPE      +   L + E  I ++ +S+      
Sbjct: 90  KISPGAFAPLVKLERLYLSK-NQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 345 LRYLLLSY 352
           +  + L  
Sbjct: 147 MIVVELGT 154

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 21/163 (12%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLTGTAIKELPSSI- 268
           SK L ++PS I       KLDL   +KL  LP         +  L+L    ++ LP+ I 
Sbjct: 25  SKKLTAIPSNIPA--DTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81

Query: 269 ESLLRLEYLDLSDCKRLKSLPSSL-CKLKSLGVLNLYGCSN-LQRLPE----CLGQLSSP 322
           + L  LE L ++D  +L++LP  +  +L +L  L L    N L+ LP      L +L+  
Sbjct: 82  KELKNLETLWVTD-NKLQALPIGVFDQLVNLAELRLD--RNQLKSLPPRVFDSLTKLT-- 136

Query: 323 ITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
             L L    ++ +P+ +      L+ L L  + +L+ +P   F
Sbjct: 137 -YLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAF 177

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 27/142 (19%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTA 260
            L  +  L +     L++LP  +F  + L  L                     L L    
Sbjct: 83  ELKNLETLWVT-DNKLQALPIGVF--DQLVNLA-------------------ELRLDRNQ 120

Query: 261 IKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLC-KLKSLGVLNLYGCSNLQRLPECL-G 317
           +K LP  + +SL +L YL L   + L+SLP  +  KL SL  L LY  + L+R+PE    
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLY-NNQLKRVPEGAFD 178

Query: 318 QLSSPITLGLTETNIERIPESI 339
           +L+   TL L    ++R+PE  
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGA 200

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 17/160 (10%)

Query: 212 GSKSLKSLPSEI------FNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKEL 264
           G+ +L +LP+ I       +L    +  L     +  +       +I+ L + G  +  +
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKA-SVTDVVTQEELESITKLVVAGEKVASI 59

Query: 265 PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPIT 324
              IE L  LEYL+L+   ++  +   L  L  L  L +   +N       L  L++   
Sbjct: 60  QG-IEYLTNLEYLNLNGN-QITDIS-PLSNLVKLTNLYIG--TNKITDISALQNLTNLRE 114

Query: 325 LGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPL 363
           L L E NI  I    + +   +  L L  +    S  SPL
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGAN-HNLSDLSPL 151

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 9/153 (5%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGT 259
            L K+  L +  +K +  + + + NL  L +L L+    +  +  +++   +  L L   
Sbjct: 86  NLVKLTNLYIGTNK-ITDISA-LQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGAN 142

Query: 260 AIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL 319
                 S + ++  L YL +++ K +K +   +  L  L  L+L     ++ +   L  L
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESK-VKDVT-PIANLTDLYSLSLNYN-QIEDISP-LASL 198

Query: 320 SSPITLGLTETNIERIPESIIQHFVLRYLLLSY 352
           +S          I  I   +     L  L +  
Sbjct: 199 TSLHYFTAYVNQITDIT-PVANMTRLNSLKIGN 230

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTA 260
           + ++  L +  +K +  L   + NL  LT L++    ++  +  +     +  L +    
Sbjct: 220 MTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ 276

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           I ++ S + +L +L  L L++ +        +  L +L  L L    ++  +   L  LS
Sbjct: 277 ISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP-LASLS 333

Query: 321 SPITLGLTETNIER 334
              +       I++
Sbjct: 334 KMDSADFANQVIKK 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS---WLFLT 257
            N+  I  +  S  LK   + +  +   + +LDLSG   L ++        +    L L+
Sbjct: 9   GNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLS 66

Query: 258 GTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLG 317
              + E    +ESL  L  LDL++   ++ L        S+  L+     N+ R+     
Sbjct: 67  SNVLYETL-DLESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANN-NISRVSC--S 117

Query: 318 QLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPSPLFLA 366
           +      + L    I  + +        ++YL L  +  + ++      A
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAA 166

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 15/151 (9%)

Query: 218 SLPSEIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLTGTAIKEL-PSSIESLLR 273
           ++     N        ++  S LK+       S+ N+  L L+G  + ++  + +    +
Sbjct: 1   AIHEIKQNGNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 274 LEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333
           LE L+LS    L      L  L +L  L+L     +Q L        S  TL     NI 
Sbjct: 60  LELLNLSSN-VLYETL-DLESLSTLRTLDLNNN-YVQELL----VGPSIETLHAANNNIS 112

Query: 334 RIPESIIQHFVLRYLLLSYSERLQSLPSPLF 364
           R+  S  Q    + + L+ + ++  L     
Sbjct: 113 RVSCSRGQG--KKNIYLANN-KITMLRDLDE 140

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 21/176 (11%), Positives = 49/176 (27%), Gaps = 10/176 (5%)

Query: 190 IAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK-----LKRLP 244
                      +  +V  +  +  K L     E   +  L       C         RL 
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 245 EISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCK-LKSLGVLNL 303
            +     + L   G+  + L    E+  R   +D     + +++   +    ++   L  
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQ 367

Query: 304 YG---CSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL 356
                   +        +L   +   + +  ++   E      +LR ++  Y E  
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY 423

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 21/150 (14%)

Query: 207 ILNLRGSKSLKSLPSEIF--NLEFLTKLDLSGCSKLKRLPEISSG------NISWLFLTG 258
           +L+L  +  L  L +E     L  L  L LS       L  ISS       N+ +L L+ 
Sbjct: 43  LLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAFVPVPNLRYLDLSS 97

Query: 259 TAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPE-- 314
             +  L   +   L  LE L L +   +  +   +   +  L  L L     + R P   
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVEL 155

Query: 315 --CLGQLSSPITLGLTETNIERIPESIIQH 342
                +L   + L L+   ++++P + +Q 
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 237 CSKLKRLPEISSG---NISWLFLTGTAIKELPSSI--ESLLRLEYLDLSDCKRLKSLPS- 290
           CSK ++LP +        + L L+   +  L +      L  L  L LS    L  + S 
Sbjct: 25  CSK-QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSE 82

Query: 291 SLCKLKSLGVLNLYGCSNLQRLPEC----LGQLSSPITLGLTETNIERIPESIIQHFV-L 345
           +   + +L  L+L    +L  L E     L  L     L L   +I  +  +  +    L
Sbjct: 83  AFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE---VLLLYNNHIVVVDRNAFEDMAQL 138

Query: 346 RYLLLSYSERLQSLPSPLFLARGCL 370
           + L LS + ++   P  L      L
Sbjct: 139 QKLYLSQN-QISRFPVELIKDGNKL 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 31/154 (20%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLL 272
             +   +P  +        LDLS  + L+ L                       S  S  
Sbjct: 16  ELNFYKIPDNLPF--STKNLDLSF-NPLRHLG--------------------SYSFFSFP 52

Query: 273 RLEYLDLSDCKRLKSLPSSLC-KLKSLGVLNLYGCSN-LQRLP-ECLGQLSSPITLGLTE 329
            L+ LDLS C+ ++++       L  L  L L G  N +Q L       LSS   L   E
Sbjct: 53  ELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG--NPIQSLALGAFSGLSSLQKLVAVE 109

Query: 330 TNIERIPESIIQHFV-LRYLLLSYSERLQSLPSP 362
           TN+  +    I H   L+ L ++++  +QS   P
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHN-LIQSFKLP 142

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 58/231 (25%)

Query: 93  LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFA---EVKYLHWHGYPLKSFPSN 149
           L   +F   P+L+ L            C++  ++D  +     +  L   G P++S    
Sbjct: 43  LGSYSFFSFPELQVLDLSR--------CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 150 LSA-----EKLVLFEVPENDIEQLWDCV-KHYSKL-------NQIIHAVCHRLIAKTPNP 196
             +     +KLV  E    ++  L +    H   L       N I              P
Sbjct: 95  AFSGLSSLQKLVAVE---TNLASLENFPIGHLKTLKELNVAHNLI---------QSFKLP 142

Query: 197 TLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255
                L  +  L+L  +K ++S+       L  +  L+LS                  L 
Sbjct: 143 EYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS------------------LD 183

Query: 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYG 305
           L+   +  +       +RL+ L L   + LKS+P     +L SL  + L+ 
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAI 261
           L+K+  L+   +  L  +   + +   L      GC K+K L    +  +  L      I
Sbjct: 253 LSKLTTLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309

Query: 262 KELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSS 321
            EL   +    +L YL L++ + L  L   +     L  L+     ++Q     +G++ +
Sbjct: 310 TELD--LSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNA-HIQDFSS-VGKIPA 362

Query: 322 PITLGLTETNIERIPESIIQHFVLRYLLLS 351
                  E     +P+  + +  L   +  
Sbjct: 363 LNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 30/179 (16%)

Query: 201 RLNKVVILNLRGSKSLKSLPS-------EIFNLEF--LTKLDLSGCSKLKRL-------- 243
           +L  +  L+     S+  +                  +T LDLS  + L  L        
Sbjct: 40  QLATLTSLDCHN-SSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLT 98

Query: 244 --PEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVL 301
                    +++L      + +L  S      L YL+ +    L  +   +     L  L
Sbjct: 99  NLDVTPLTKLTYLNCDTNKLTKLDVS--QNPLLTYLNCARNT-LTEID--VSHNTQLTEL 153

Query: 302 NLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLP 360
           + +    + +L   +   +   TL  +   I  +  S  Q+ +L  L    +  +  L 
Sbjct: 154 DCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVS--QNKLLNRLNCDTN-NITKLD 207

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 6/154 (3%)

Query: 200 PRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTG 258
                 +   L  S +     ++   +  LT + L+    +  L  I    NI  L +  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQ---MNSLTYITLANI-NVTDLTGIEYAHNIKDLTINN 75

Query: 259 TAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQ 318
                  + I  L  LE L +           +L  L SL +L++   ++   +   +  
Sbjct: 76  IHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 319 LSSPITLGLTETNIERIPESIIQHFVLRYLLLSY 352
           L    ++ L+          +     L+ L + +
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCS-KLKRLPEISS-GNISWLFLTGT 259
            + +  L +       +  + I  L  L +L + G      ++P +S   +++ L ++ +
Sbjct: 65  AHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 260 AIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQ 318
           A  +   + I +L ++  +DLS    +  +   L  L  L  LN+     +      +  
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD-GVHDY-RGIED 179

Query: 319 LSSPITLGLTETNI 332
                 L      I
Sbjct: 180 FPKLNQLYAFSQTI 193

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 21/137 (15%), Positives = 56/137 (40%), Gaps = 9/137 (6%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTA 260
           L + +   L  +  +    S   +L+ +T L       +K +  +    N++ +  +   
Sbjct: 23  LAEKMKTVLGKTN-VTDTVS-QTDLDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNNQ 79

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           + ++   +++L +L  + +++ + +  +   L  L +L  L L+    +  +   L  L+
Sbjct: 80  LTDIT-PLKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTLFNN-QITDIDP-LKNLT 134

Query: 321 SPITLGLTETNIERIPE 337
           +   L L+   I  I  
Sbjct: 135 NLNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 29/172 (16%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTA 260
           L++V  L       +KS+   +  L  LT+++ S   +L  +  + +   +  + +    
Sbjct: 45  LDQVTTLQADRLG-IKSI-DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ 101

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLY-----------GCSNL 309
           I ++   + +L  L  L L + + +  +   L  L +L  L L            G ++L
Sbjct: 102 IADIT-PLANLTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLELSSNTISDISALSGLTSL 158

Query: 310 QRL--------PECLGQLSSPITLGLTETNIERIPESIIQHFV-LRYLLLSY 352
           Q+L         + L  L++   L ++   +  I    +     L  L+ + 
Sbjct: 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATN 208

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 17/160 (10%)

Query: 203 NKVVILNLRGSKSLKSL---------PSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNIS 252
               +  L    +L+ L          S +  L  L  L  +   ++  +  +    N+ 
Sbjct: 166 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN-QISDITPLGILTNLD 224

Query: 253 WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL 312
            L L G  +K++ + + SL  L  LDL++ + + +L   L  L  L  L L     +  +
Sbjct: 225 ELSLNGNQLKDIGT-LASLTNLTDLDLANNQ-ISNLA-PLSGLTKLTELKLGAN-QISNI 280

Query: 313 PECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSY 352
              L  L++   L L E  +E I   I     L YL L +
Sbjct: 281 SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYF 318

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 225 NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR 284
            L    K  L   +    + +     ++ L      IK +   +E L  L  ++ S+ + 
Sbjct: 22  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ- 79

Query: 285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFV 344
           L  +   L  L  L  + +     +  +   L  L++   L L    I  I    +++  
Sbjct: 80  LTDIT-PLKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 345 -LRYLLLSYSERLQSLPS 361
            L  L LS +  +  + +
Sbjct: 135 NLNRLELSSN-TISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 30/163 (18%), Positives = 69/163 (42%), Gaps = 14/163 (8%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGT 259
            L K+V + +  ++ +  +   + NL  LT L L    ++  +  + +  N++ L L+  
Sbjct: 88  NLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSN 144

Query: 260 AIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL 319
            I ++ + +  L  L+ L   +     +    L  L +L  L++     +  +   L +L
Sbjct: 145 TISDISA-LSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSN-KVSDISV-LAKL 198

Query: 320 SSPITLGLTETNIERIPESIIQHFV-LRYLLLSYSERLQSLPS 361
           ++  +L  T   I  I    +     L  L L+ + +L+ + +
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIGT 238

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 10/152 (6%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTA 260
           L  +  L+L  ++ + +L   +  L  LT+L L    ++  +  ++    ++ L L    
Sbjct: 242 LTNLTDLDLANNQ-ISNLA-PLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ 298

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           ++++   I +L  L YL L     +  + S +  L  L  L  Y    +  +   L  L+
Sbjct: 299 LEDISP-ISNLKNLTYLTLYFNN-ISDI-SPVSSLTKLQRLFFYNN-KVSDVSS-LANLT 353

Query: 321 SPITLGLTETNIERIPESIIQHFVLRYLLLSY 352
           +   L      I  +   +     +  L L+ 
Sbjct: 354 NINWLSAGHNQISDLTP-LANLTRITQLGLND 384

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 7/139 (5%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTA 260
           L  +  L L  +  +  + S + +L  L +L      K+  +  +++  NI+WL      
Sbjct: 308 LKNLTYLTLYFNN-ISDI-SPVSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           I +L   + +L R+  L L+D     + P +     S+    +   +     P  +    
Sbjct: 365 ISDLTP-LANLTRITQLGLNDQA-WTNAPVNYKANVSIPNT-VKNVTGALIAPATISDGG 421

Query: 321 SPITLGLTETNIERIPESI 339
           S     +T        E  
Sbjct: 422 SYTEPDITWNLPSYTNEVS 440

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 17/204 (8%)

Query: 146 FPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKV 205
           F   LS EK  + +      ++L +           I  +   L         +   + +
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411

Query: 206 VILN--------LRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFL 256
             ++           SK L            +  L L+    L  L  +     ++ L L
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDL 470

Query: 257 TGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSN-LQRLPE- 314
           +   ++ LP ++ +L  LE L  SD   L+++   +  L  L  L L  C+N LQ+    
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLL--CNNRLQQSAAI 526

Query: 315 -CLGQLSSPITLGLTETNIERIPE 337
             L      + L L   ++ +   
Sbjct: 527 QPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 40/274 (14%), Positives = 78/274 (28%), Gaps = 18/274 (6%)

Query: 104 LRFLKFYSSSFNGENKCKMSYLQ---DPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEV 160
            R+L   +   +      +S  +      F+    +      L                 
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 161 PENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPT----LMPRLNKVVILNLRGSKSL 216
             N    +W C    + LN  +     R+I    +      L+    +    +    + L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 217 KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEY 276
                 +     L     S C +L+ L   +   +  + L   A+  L    E+L     
Sbjct: 352 FRCELSVEKSTVLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 410

Query: 277 LDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL---------PECLGQLSSPITLGL 327
           L   D  R   L     K      +     ++++ L            L QL     L L
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDL 470

Query: 328 TETNIERIPESIIQHFVLRYLLLSYSERLQSLPS 361
           +   +  +P ++     L  L  S +  L+++  
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDN-ALENVDG 503

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 32/268 (11%), Positives = 82/268 (30%), Gaps = 38/268 (14%)

Query: 93  LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSA 152
           +          + +    +    G+   +           +              S +  
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY- 296

Query: 153 EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG 212
           E      +    +              +++H +C              +++  + L+   
Sbjct: 297 EIFSNMNIKNFTVSG-----------TRMVHMLCPS------------KISPFLHLDF-S 332

Query: 213 SKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSG-----NISWLFLTGTAIKELPS 266
           +  L     E   +L  L  L L   ++LK L +I+       ++  L ++  ++     
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQM-NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 267 SI--ESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPIT 324
                    L  L++S    L       C    + VL+L+    ++ +P+ + +L +   
Sbjct: 392 KGDCSWTKSLLSLNMSSNI-LTDTIFR-CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQE 448

Query: 325 LGLTETNIERIPESIIQHFV-LRYLLLS 351
           L +    ++ +P+ I      L+ + L 
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 10/159 (6%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGT 259
            L+K+ IL +  ++ ++ L   +F   + L  LDLS   KL ++    + N+  L L+  
Sbjct: 43  SLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KLVKISCHPTVNLKHLDLSFN 100

Query: 260 AIKELPSS--IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNL-YGCSNLQRLPECL 316
           A   LP      ++ +L++L LS    L+     +  +  L +  +           E  
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTH-LEKSS--VLPIAHLNISKVLLVLGETYGEKEDP 157

Query: 317 GQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSE 354
             L    T  L       +    I+   V     L  S 
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 37/316 (11%), Positives = 84/316 (26%), Gaps = 48/316 (15%)

Query: 95  PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEK 154
              F  M +L+FL   ++     +   +++L       V    +          + + E 
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167

Query: 155 LVLFEVPENDIEQLWDCVKHYSKLNQIIH----AVCHRLIAKTPNPTLMPRLNKVVILNL 210
           L +      +   + D         ++ +       ++          +    K+  L L
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227

Query: 211 RGSKSLKSLPSEIFNL---EFLTKLDLSGCSKLKRLPEISSG------------------ 249
              ++  +    I  L     +    +S      +L                        
Sbjct: 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 250 -------------NISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLC-K 294
                        N++    T +  + +       +    +LD S+   L       C  
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVFENCGH 346

Query: 295 LKSLGVLNLYGCSNLQRLPECLG---QLSSPITLGLTETNIERI-PESIIQHFV-LRYLL 349
           L  L  L L   + L+ L +      Q+ S   L +++ ++     +        L  L 
Sbjct: 347 LTELETLILQM-NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 350 LSYSERLQSLPSPLFL 365
           +S +  L         
Sbjct: 406 MSSN-ILTDTIFRCLP 420

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 9/154 (5%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLL 272
           +   +  P + F      K +L   S    + +    +I  +    + IK +   I+ L 
Sbjct: 7   TPIKQIFPDDAFAE--TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLP 63

Query: 273 RLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE-CLGQLSSPITLGLTETN 331
            + YL L    +L  +  +L +L +L  L L G   LQ LP     +L++   L L E  
Sbjct: 64  NVRYLALGG-NKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQ 120

Query: 332 IERIPESIIQHFV-LRYLLLSYSERLQSLPSPLF 364
           ++ +P+ +      L YL L    +LQSLP  +F
Sbjct: 121 LQSLPDGVFDKLTNLTYLNL-AHNQLQSLPKGVF 153

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 12/121 (9%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIFN-LEFLTKLDLSGCSKLKRLPE---ISSGNISWLFL 256
            L  +  L L     L+SLP+ +F+ L  L +L L   ++L+ LP+       N+++L L
Sbjct: 83  ELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNL 140

Query: 257 TGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLC-KLKSLGVLNLYGCSN-LQRLP 313
               ++ LP  + + L  L  LDL    +L+SLP  +  KL  L  L LY   N L+ +P
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRLY--QNQLKSVP 197

Query: 314 E 314
           +
Sbjct: 198 D 198

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 9e-07
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 15/224 (6%)

Query: 127 DPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVC 186
           D  FAE    +     +    +      +       +DI+ +   +++   + ++   + 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLF--LN 73

Query: 187 HRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI 246
              +      T +  L     L L     +K L S + +L+ L  L L     +  +  +
Sbjct: 74  GNKLTDIKPLTNLKNLGW---LFL-DENKIKDL-SSLKDLKKLKSLSLEHN-GISDINGL 127

Query: 247 SS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG 305
                +  L+L    I ++ + +  L +L+ L L D + +  +   L  L  L  L L  
Sbjct: 128 VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDI-VPLAGLTKLQNLYLSK 184

Query: 306 CSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLL 349
             N       L  L +   L L        P +   + V+   +
Sbjct: 185 --NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 24/121 (19%)

Query: 186 CHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLP 244
           C R  A   +   +P    +  L +   + L+ L       L  L  L +     L+ + 
Sbjct: 15  CTRDGA-LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVA 72

Query: 245 EISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLY 304
                               P +     RL  L+LS    L+SL     +  SL  L L 
Sbjct: 73  --------------------PDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLS 111

Query: 305 G 305
           G
Sbjct: 112 G 112

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 225 NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR 284
           +L  L +L ++   +LK L  I S  +S LFL    +++   S+  L  LE L + + K 
Sbjct: 83  DLTKLEELSVNRN-RLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNK- 139

Query: 285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFV 344
           LKS+   L  L  L VL+L+G   +      L +L     + LT       P        
Sbjct: 140 LKSI-VMLGFLSKLEVLDLHGN-EITNTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELY 196

Query: 345 L 345
           +
Sbjct: 197 I 197

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 12/155 (7%)

Query: 200 PRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTG 258
           P L   + +    S           +L+ +T L   G   +  +  +    N+  L L  
Sbjct: 16  PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKD 72

Query: 259 TAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQ 318
             I +L + +++L ++  L+LS    LK++ S++  L+S+  L+L     +  +   L  
Sbjct: 73  NQITDL-APLKNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTST-QITDVTP-LAG 127

Query: 319 LSSPITLGLTETNIERIPESIIQHFV-LRYLLLSY 352
           LS+   L L    I  I    +     L+YL +  
Sbjct: 128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 10/152 (6%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTA 260
           L K+  L L G+  LK++ S I  L+ +  LDL+   ++  +  ++   N+  L+L    
Sbjct: 84  LTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQ 140

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           I  + S +  L  L+YL + + + +  L + L  L  L  L      N       L  L 
Sbjct: 141 ITNI-SPLAGLTNLQYLSIGNAQ-VSDL-TPLANLSKLTTLKADD--NKISDISPLASLP 195

Query: 321 SPITLGLTETNIERIPESIIQHFVLRYLLLSY 352
           + I + L    I  +   +     L  + L+ 
Sbjct: 196 NLIEVHLKNNQISDV-SPLANTSNLFIVTLTN 226

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 59/310 (19%), Positives = 113/310 (36%), Gaps = 38/310 (12%)

Query: 83  LDMSKVKEFRLNPS-TFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGY 141
           LD+SK +   L    +F K+  L+ + F S+      + ++  LQ      + +      
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK---TLSFFSLAAN 184

Query: 142 PLKSFPSNLSAEKLVLFEVP--------ENDIEQLW--DCVKHYSKLNQIIHAVCHRLIA 191
            L S  S    + +  F            N        +     SK       + H ++ 
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 192 --------KTPNPTLMPRLNKVVILNLRGSK-SLKSLPSEIF-NLEFLTKLDLSGCSKLK 241
                   K P+      L +  + +L  S   + SL S +F  L+ L  L+L+   K+ 
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KIN 303

Query: 242 RLPEISSGNISWL---FLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCKLKS 297
           ++ + +   +  L    L+   + EL SS    L ++ Y+DL           +   L+ 
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 298 LGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ 357
           L  L+L   +        +  + S   + L+   +  +P+    +     + LS + RL+
Sbjct: 364 LQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPK---INLTANLIHLSEN-RLE 414

Query: 358 SLPSPLFLAR 367
           +L    FL R
Sbjct: 415 NLDILYFLLR 424

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 34/189 (17%), Positives = 57/189 (30%), Gaps = 42/189 (22%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLTGTAIKEL--PSS 267
             +L  +P     L    +L LS    ++ +   S      +  L L            +
Sbjct: 13  FCNLTQVPQ---VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 268 IESLLRLEYLDLSDCKRLKSLPSS-LCKLKSLGVLNLYGC---------------SNLQR 311
             +L  L  LDL    ++  L       L  L  L LY C                 L R
Sbjct: 69  FRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 312 L------------PECLGQLSSPITLGLTETNIERIPESIIQHFV---LRYLLLSYSERL 356
           L                G+L+S  ++  +   I  + E  ++      L +  L+ +  L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN-SL 186

Query: 357 QSLPSPLFL 365
            S  S  + 
Sbjct: 187 YSRVSVDWG 195

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 44/290 (15%), Positives = 85/290 (29%), Gaps = 50/290 (17%)

Query: 82  CLDMSKVKEFRLNPSTFTKMPKLRFL--------KFYSSSFNGENK--------CKMSYL 125
            L+++  K  ++    F  +  L+ L        + YSS+F G  K          ++ +
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 126 QDPGFAEV---KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQII 182
           QD  F  +   + L      L +     S   + L       + ++             +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413

Query: 183 HAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF--NLEFLTKLDLSGCSKL 240
             +             + R+  + IL L  ++   S   +        L +L L      
Sbjct: 414 ENL--------DILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGEN--- 461

Query: 241 KRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLG 299
             L       + W    G            L  L+ L L+    L SLP      L +L 
Sbjct: 462 -MLQLAWETELCWDVFEG------------LSHLQVLYLNHN-YLNSLPPGVFSHLTALR 507

Query: 300 VLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLL 349
            L+L     L  L       ++   L ++   +      +     +  + 
Sbjct: 508 GLSLNSN-RLTVLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 14/117 (11%)

Query: 201 RLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSG----CSKLKRLPEISSGNISW-- 253
            +  V  L L   +    L          +  L+L            L    + ++    
Sbjct: 196 SIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 254 ----LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCK-LKSLGVLNLYG 305
               + +T  ++ ++   +  +  L  L+ S   +LKS+P  +   L SL  + L+ 
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 19/116 (16%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 255
           PT      K+  ++   S  +      +  L+++ K+ L  C                  
Sbjct: 54  PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY---------------- 97

Query: 256 LTGTAIKELPSSIESLLRLEYLDLSDCKRL--KSLPSSLCKLKSLGVLNLYGCSNL 309
           +    ++ L         +  +++  C  +  K +  +L   ++L  L L     +
Sbjct: 98  IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGV 152

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 31/185 (16%)

Query: 195 NPTLMPRLNKVVILNLRGSKSLKSLPSEIF-NLEFLTKLDLSGCSKLKRLPEISSGNISW 253
           N T   RL  +  L +        + +  F  L  L  L L   ++  +L          
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLE--------- 95

Query: 254 LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSL---PSSLCKLKSLGVLNLYGCSNLQ 310
                        +   L  LE L L+ C  L       +    L SL +L L   +N++
Sbjct: 96  -----------TGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRD-NNIK 142

Query: 311 RL-PECL-GQLSSPITLGLTETNIERIPESIIQHFVLRYL--LLSYSERLQSLPSPLFLA 366
           ++ P      +     L LT   ++ I E  + +F  ++   L   S  LQ +       
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 367 RGCLA 371
             C  
Sbjct: 203 EKCGN 207

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 28/137 (20%), Positives = 62/137 (45%), Gaps = 12/137 (8%)

Query: 237 CS--KLKRLPEISSGNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLC 293
           C    L ++PE+ + +++++ L+  +I EL   S   L  L++L +        + ++  
Sbjct: 17  CINRGLHQVPELPA-HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75

Query: 294 -KLKSLGVLNLYGCSNLQRLPE-CLGQLSSPITLGLTETNIE--RIPESIIQHFV-LRYL 348
             L SL +L L   +   +L       L++   L LT+ N++   +  +  +    L  L
Sbjct: 76  RGLSSLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134

Query: 349 LLSYSERLQSL-PSPLF 364
           +L  +  ++ + P+  F
Sbjct: 135 VLRDN-NIKKIQPASFF 150

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 12/121 (9%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIFN-LEFLTKLDLSGCSKLKRLPEI---SSGNI 251
           P +   L  +  L L  ++ L +LP  +F+ L  LT LDL   ++L  LP        ++
Sbjct: 57  PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHL 114

Query: 252 SWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYG----C 306
             LF+    + ELP  IE L  L +L L   + LKS+P  +  +L SL    L+G    C
Sbjct: 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173

Query: 307 S 307
            
Sbjct: 174 E 174

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 12/131 (9%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSI-ESL 271
           SK   S+P+ I     +  L  +  +KL+     S  N+  L+L    +  LP  + +SL
Sbjct: 28  SKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87

Query: 272 LRLEYLDLSDCKRLKSLPS----SLCKLKSLGVLNLYGCSN-LQRLPECLGQLSSPITLG 326
            +L  LDL    +L  LPS     L  LK L +     C N L  LP  + +L+    L 
Sbjct: 88  TQLTVLDLGT-NQLTVLPSAVFDRLVHLKELFM-----CCNKLTELPRGIERLTHLTHLA 141

Query: 327 LTETNIERIPE 337
           L +  ++ IP 
Sbjct: 142 LDQNQLKSIPH 152

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 20/125 (16%)

Query: 201 RLNKVVILNLRGSKSL--KSLPSEIFNLEFLTKLDLSGCSKL----------KRLPEISS 248
           + + +V LNL G       +L + + +   L +L+LS C                  I+ 
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199

Query: 249 GNIS--WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRL--KSLPSSLCKLKSLGVLNLY 304
            N+S     L  + +  L   +     L +LDLSD   L          +L  L  L+L 
Sbjct: 200 LNLSGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLS 255

Query: 305 GCSNL 309
            C ++
Sbjct: 256 RCYDI 260

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 21/125 (16%)

Query: 186 CHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLP 244
              L  K  +P +  RL    ++  R  +S    P +E F+   +  +DLS         
Sbjct: 51  TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV------ 104

Query: 245 EISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLY 304
            I    +  +             +    +L+ L L   +    + ++L K  +L  LNL 
Sbjct: 105 -IEVSTLHGI-------------LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150

Query: 305 GCSNL 309
           GCS  
Sbjct: 151 GCSGF 155

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 15/160 (9%)

Query: 213 SKSLKSLPSEI-FNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSI-ES 270
            KSL S+PS I  + E L  L  +G + L          ++WL L    ++ L + + + 
Sbjct: 23  GKSLDSVPSGIPADTEKL-DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 271 LLRLEYLDLSDCKRLKSLPSSL-CKLKSLGVLNLYGCSN-LQRLPE----CLGQLSSPIT 324
           L  L  L L++  +L SLP  +   L  L  L L    N L+ LP      L +L     
Sbjct: 82  LTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLG--GNQLKSLPSGVFDRLTKLK---E 135

Query: 325 LGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLF 364
           L L    ++ IP            L   + +LQS+P   F
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSI-ESL 271
           S+   S+P+ I        L+ +    L         +++ L+L G  ++ LP+ +   L
Sbjct: 16  SQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75

Query: 272 LRLEYLDLSDCKRLKSLPSSLC-KLKSLGVLNLYGCSN-LQRLPE----CLGQLSSPITL 325
             L YL+LS   +L+SLP+ +  KL  L  L L   +N LQ LP+     L QL     L
Sbjct: 76  TSLTYLNLS-TNQLQSLPNGVFDKLTQLKELALN--TNQLQSLPDGVFDKLTQLK---DL 129

Query: 326 GLTETNIERIPE 337
            L +  ++ +P+
Sbjct: 130 RLYQNQLKSVPD 141

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 202 LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTA 260
           L  V  L L G+K L  +   + NL+ L  L L    K+K L  +     +  L L    
Sbjct: 67  LPNVTKLFLNGNK-LTDI-KPLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNG 123

Query: 261 IKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLS 320
           I ++ + +  L +LE L L + K +  + + L +L  L  L+L     +  +   L  L+
Sbjct: 124 ISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDI-VPLAGLT 178

Query: 321 SPITLGLTETNIERIPE 337
               L L++ +I  +  
Sbjct: 179 KLQNLYLSKNHISDLRA 195

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 38/276 (13%), Positives = 80/276 (28%), Gaps = 27/276 (9%)

Query: 95  PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQ-DPGFAEVKYLHWHGYPLKSFPSNLSAE 153
              F  + KL FL   ++ F   +   +++L       ++   H  G   +S     +  
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ-IPNTT 197

Query: 154 KLVLFEVPENDIEQLWDCVKHYSKL-----NQIIHAVCHRLIAKTPNPTLMPRLNKVVIL 208
            L L   P +      +   +          ++    C RL+      T  P L  V + 
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSI 268
           ++  +        + F    +  L++   +                 +T    +E  +  
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLT-----------------ITERIDREEFTYS 300

Query: 269 ESLLR-LEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE-CLGQLSSPITLG 326
           E+ L+ L    + +   L S  +       + +  L   S+   +   C    SS   L 
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI-SDTPFIHMVCPPSPSSFTFLN 359

Query: 327 LTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSP 362
            T+                   L+     L++    
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 215 SLKSLPSEIFNLEF-----LTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIE 269
           SL SL S  ++        +  L+LS       +       +  L L    I  +P  + 
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT 470

Query: 270 SLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYG 305
            L  L+ L+++   +LKS+P     +L SL  + L+ 
Sbjct: 471 HLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 41/337 (12%), Positives = 89/337 (26%), Gaps = 48/337 (14%)

Query: 50  SINPGNRSRLWHHEDIYEVLTYNTGTEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKF 109
            I  G    L         L ++  +     + + ++ +   +L+          R + F
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241

Query: 110 YSSSFNGENKCKMSY----LQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDI 165
            S    G     ++            ++    W           L+   L + E  + + 
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP-----RPVEYLNIYNLTITERIDREE 296

Query: 166 EQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFN 225
               +       +  +        +       L     ++ I  L  S     +      
Sbjct: 297 FTYSETALKSLMIEHV-----KNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPP 350

Query: 226 -LEFLTKLDLSGCSKLKRLPEISSG---NISWLFLTGTAIKELPSSIESLLRLEYLDLSD 281
                T L+ +                  +  L L    +K           +  L+  D
Sbjct: 351 SPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 282 CKRLKSLPS----SLCKL-KSLGVLNLY---------------------GCSNLQRLPEC 315
              L SL S      C   +S+ VLNL                        + +  +P+ 
Sbjct: 410 V-SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKD 468

Query: 316 LGQLSSPITLGLTETNIERIPESIIQHF-VLRYLLLS 351
           +  L +   L +    ++ +P+ +      L+Y+ L 
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 6/129 (4%)

Query: 198 LMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKL--KRLPEISSG--NISW 253
                  +             +P +  NL F  KL   G S +    +P +      I  
Sbjct: 238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297

Query: 254 LFLTGTAI--KELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR 311
           L L    +  ++  + I+    LE L+  +    + L       K L  L +   ++ Q 
Sbjct: 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQG 357

Query: 312 LPECLGQLS 320
           + +  G +S
Sbjct: 358 MEDEEGLVS 366

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 197 TLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL 256
           TL+ +   + +L  R     + L       + L +L +   +  + + +          +
Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG------LV 365

Query: 257 TGTAIKELPSSIESLLRLEYLDLSDCK----RLKSLPSSLCKLKSLGVLNLYGCSNLQRL 312
           +   +  L    +    LEY+ +         L+S+ + L  L    ++ L     +  L
Sbjct: 366 SQRGLIAL---AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422

Query: 313 PECLG 317
           P   G
Sbjct: 423 PLDNG 427

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLTGTAIKELPSSI-E 269
           +K LK LP  I     +T+L L G ++   +P+  S   +++ + L+   I  L +    
Sbjct: 19  NKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 270 SLLRLEYLDLSDCKRLKSLPSSLC-KLKSLGVLNLYGCSNLQRLPE 314
           ++ +L  L LS   RL+ +P      LKSL +L+L+G +++  +PE
Sbjct: 76  NMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPE 119

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLFLTGTAIKELPSSI- 268
           SK L S+P+ I +    T+L+L   +KL+ LP         ++ L L+   I+ LP  + 
Sbjct: 16  SKGLTSVPTGIPSS--ATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72

Query: 269 ESLLRLEYLDLSDCKRLKSLPSSLC-KLKSLGVLNLYGCSNLQRLPE 314
           + L +L  L L + K L+SLP+ +  KL  L  L L   + L+ +P+
Sbjct: 73  DKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDT-NQLKSVPD 117

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 196 PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS----GNI 251
           P   P L  + + N           +       L  LDLS  S L+      S      +
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQL 255

Query: 252 SWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYG 305
           + L L+ T +K++P  + +  +L  LDLS   RL   PS   +L  +G L+L G
Sbjct: 256 NSLNLSFTGLKQVPKGLPA--KLSVLDLSYN-RLDRNPSPD-ELPQVGNLSLKG 305

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 19/112 (16%)

Query: 213 SKSLKSLPSEI--------FNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL 264
            + LK +P +I         N   L ++   G     RLP     ++  L L    +  +
Sbjct: 17  GRGLKEIPRDIPLHTTELLLNDNELGRISSDG--LFGRLP-----HLVKLELKRNQLTGI 69

Query: 265 PSSI-ESLLRLEYLDLSDCKRLKSLPSSLC-KLKSLGVLNLYGCSNLQRLPE 314
             +  E    ++ L L + K +K + + +   L  L  LNLY  + +  +  
Sbjct: 70  EPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYD-NQISCVMP 119

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 26/166 (15%)

Query: 218 SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYL 277
           S  + I     +  ++L G       P  +  N+      G     + +   S   LE +
Sbjct: 57  SPATVIRRFPKVRSVELKGK------PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI 110

Query: 278 DLSDCKR----LKSLPSSLCKLKSLGVLNLYGCSN-----LQRLPECLGQLSSPITLGLT 328
            L         L+ +  S    K    L L  C       L  +      L     L L 
Sbjct: 111 RLKRMVVTDDCLELIAKSFKNFKV---LVLSSCEGFSTDGLAAIAATCRNLKE---LDLR 164

Query: 329 ETNIERIPESIIQHFV-----LRYLLLSYSERLQSLPSPLFLARGC 369
           E++++ +    + HF      L  L +S      S  +   L   C
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.9
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.63
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.46
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.27
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.1
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.86
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.38
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.21
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.87
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.53
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.92
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.65
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.53
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	87.01
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	85.87

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=2.9e-29  Score=257.13  Aligned_cols=258  Identities=20%  Similarity=0.202  Sum_probs=160.3

Q ss_pred             CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          131 AEVKYLHWHGYPLK-SFPSNL-SAEKLVLFEVPENDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~-~lp~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      ++|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+..+++|+.|++++|.. .+.+|  ..+.++++|++
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p--~~l~~l~~L~~  494 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIP--SGLSNCTNLNW  494 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-CSCCC--GGGGGCTTCCE
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc-cCcCC--HHHhcCCCCCE
Confidence            44555555555443 333333 3455555555555544 2444455555555555555421 11222  13444555555


Q ss_pred             EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCc-ccC-------------------
Q 015671          208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIK-ELP-------------------  265 (403)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~-~l~-------------------  265 (403)
                      |++++|.+.+.+|..++.+++|+.|++++|...+.+|....  ++|+.|++++|.++ .+|                   
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~  574 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR  574 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence            55555555555555555555555555555554444444433  55555555555443 333                   


Q ss_pred             ---------------------------------------------------hhhhCCCCCCEEecccCcCCCcCCccccC
Q 015671          266 ---------------------------------------------------SSIESLLRLEYLDLSDCKRLKSLPSSLCK  294 (403)
Q Consensus       266 ---------------------------------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  294 (403)
                                                                         ..++.+++|+.|++++|.+.+.+|..+++
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  654 (768)
T 3rgz_A          575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS  654 (768)
T ss_dssp             EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence                                                               23445678999999999999999999999


Q ss_pred             CCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCCC-------eEec
Q 015671          295 LKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPSP-------LFLA  366 (403)
Q Consensus       295 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~~-------~l~i  366 (403)
                      ++.|+.|++++|.+.+.+|..++++++|+.|++++|.++ .+|..+..+++|+.|++++|+..+.+|..       ...+
T Consensus       655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~  734 (768)
T 3rgz_A          655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF  734 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGG
T ss_pred             cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHh
Confidence            999999999999999999999999999999999999999 89999999999999999999999999973       3345


Q ss_pred             cCCCCCCC-----ch-hhhccccccCCCcch
Q 015671          367 RGCLAMQP-----FL-GIVEHTHRIPHIDHM  391 (403)
Q Consensus       367 ~~c~~l~~-----~~-~~~~~~~~~~~~~~~  391 (403)
                      .++|.|-.     |. ...++|++++|+|+.
T Consensus       735 ~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          735 LNNPGLCGYPLPRCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             CSCTEEESTTSCCCCSCC-------------
T ss_pred             cCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence            55555443     33 345799999998875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=4.3e-27  Score=241.03  Aligned_cols=267  Identities=19%  Similarity=0.223  Sum_probs=195.1

Q ss_pred             cChhhhcCCCCCcEEEEeccCCCCCCccccc-------------------ccCCCCC---CCeeEEEecCCCCC-CCCCC
Q 015671           93 LNPSTFTKMPKLRFLKFYSSSFNGENKCKMS-------------------YLQDPGF---AEVKYLHWHGYPLK-SFPSN  149 (403)
Q Consensus        93 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-------------------~~~~l~~---~~L~~L~l~~~~~~-~lp~~  149 (403)
                      +....|..+++|++|++++|.+.|..|....                   .+..+..   ++|++|++++|.+. .+|..
T Consensus       334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  413 (768)
T 3rgz_A          334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT  413 (768)
T ss_dssp             CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred             CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH
Confidence            3345588888999999988877543332111                   1111111   34666666666554 44554


Q ss_pred             C-CCCCceEEEccCCCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCC
Q 015671          150 L-SAEKLVLFEVPENDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLE  227 (403)
Q Consensus       150 ~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  227 (403)
                      + .+++|++|++++|.+. .+|..+..+++|+.|++++|.. .+.+|.  .+..+++|++|++++|.+.+.+|..++.++
T Consensus       414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  490 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML-EGEIPQ--ELMYVKTLETLILDFNDLTGEIPSGLSNCT  490 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-CSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc-cCcCCH--HHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence            5 5667777777777666 3566677777777777777632 223332  566677888888888887777887788888


Q ss_pred             CCCEEeecCCCCCCCCccccc--CCCcEEEecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccc------------
Q 015671          228 FLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSL------------  292 (403)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------  292 (403)
                      +|+.|++++|...+.+|..+.  ++|+.|++++|.++ .+|..++.+++|+.|++++|.+.+.+|..+            
T Consensus       491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~  570 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI  570 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred             CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence            888888888877777777665  88888888888887 778888888888888888888776666432            


Q ss_pred             ----------------------------------------------------------cCCCCCcEEeecCCCCCcccCc
Q 015671          293 ----------------------------------------------------------CKLKSLGVLNLYGCSNLQRLPE  314 (403)
Q Consensus       293 ----------------------------------------------------------~~l~~L~~L~l~~~~~~~~~~~  314 (403)
                                                                                +.+++|+.|++++|.+.+.+|.
T Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~  650 (768)
T 3rgz_A          571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK  650 (768)
T ss_dssp             CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred             ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence                                                                      2346788899999888888998


Q ss_pred             ccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCCC
Q 015671          315 CLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPSP  362 (403)
Q Consensus       315 ~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~~  362 (403)
                      .++++++|+.|++++|.++ .+|..++.+++|+.|++++|+..+.+|..
T Consensus       651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence            8999999999999999998 88888999999999999999888888874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=3.4e-26  Score=220.67  Aligned_cols=294  Identities=17%  Similarity=0.142  Sum_probs=213.7

Q ss_pred             CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCC-CCCC-C
Q 015671           76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSF-PSNL-S  151 (403)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~  151 (403)
                      ..++.+.+  +......+.+..|.++++|++|++++|.+.+      .+ +..+.. ++|++|++++|.+..+ |..+ .
T Consensus        30 ~~l~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~------~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  101 (455)
T 3v47_A           30 AHVNYVDL--SLNSIAELNETSFSRLQDLQFLKVEQQTPGL------VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG  101 (455)
T ss_dssp             TTCCEEEC--CSSCCCEECTTTTSSCTTCCEEECCCCSTTC------EECTTTTTTCTTCCEEECTTCTTCEECTTTTTT
T ss_pred             CccCEEEe--cCCccCcCChhHhccCccccEEECcCCcccc------eECcccccccccCCEEeCCCCccCccChhhccC
Confidence            44555444  3333345567788999999999999987642      22 344555 8999999999998876 5556 6


Q ss_pred             CCCceEEEccCCCccc-ccc--ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCC---
Q 015671          152 AEKLVLFEVPENDIEQ-LWD--CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFN---  225 (403)
Q Consensus       152 l~~L~~L~l~~~~~~~-l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---  225 (403)
                      +++|++|++++|.+.. ++.  .+..+++|++|++++|. +. .+.....+.++++|++|++++|.+.+..+..+..   
T Consensus       102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  179 (455)
T 3v47_A          102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG  179 (455)
T ss_dssp             CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CC-SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred             cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cC-ccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence            8999999999999885 343  38889999999999983 33 2221122677888999999988876655544433   


Q ss_pred             -------------------------------CCCCCEEeecCCCCCCCCccc----------------------------
Q 015671          226 -------------------------------LEFLTKLDLSGCSKLKRLPEI----------------------------  246 (403)
Q Consensus       226 -------------------------------l~~L~~L~l~~~~~~~~~~~~----------------------------  246 (403)
                                                     +++|+.|++++|...+..|..                            
T Consensus       180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  259 (455)
T 3v47_A          180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT  259 (455)
T ss_dssp             CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred             ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence                                           356788888776543211110                            


Q ss_pred             -------------ccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCccc
Q 015671          247 -------------SSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL  312 (403)
Q Consensus       247 -------------~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  312 (403)
                                   ..++|+.|++++|.++.+ |..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..
T Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  339 (455)
T 3v47_A          260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID  339 (455)
T ss_dssp             SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence                         014788888888888854 566788999999999999988777878888999999999998887777


Q ss_pred             CcccCCCCCCCEEEccCCCCccc-ChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhccc
Q 015671          313 PECLGQLSSPITLGLTETNIERI-PESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHT  382 (403)
Q Consensus       313 ~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~~~  382 (403)
                      +..+..+++|+.|++++|.++.+ |..+..+++|++|++++|... .+|...  +..+++|+.+....+.+
T Consensus       340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGI--FDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTT--TTTCTTCCEEECCSSCB
T ss_pred             hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCHhH--hccCCcccEEEccCCCc
Confidence            88888999999999999999855 677888999999999998655 455431  35667777655444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.2e-26  Score=213.96  Aligned_cols=223  Identities=23%  Similarity=0.301  Sum_probs=166.0

Q ss_pred             CCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccccccccccCCC
Q 015671          100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYSK  177 (403)
Q Consensus       100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~  177 (403)
                      ..++++.|++++|.+.       .+|..+.. ++|++|++++|.+..+|..+ .+++|++|++++|.+..+|..+..+++
T Consensus        79 ~~~~l~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~  151 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-------QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR  151 (328)
T ss_dssp             TSTTCCEEEEESSCCS-------SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred             cccceeEEEccCCCch-------hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence            4578889999888773       56666666 88888888888888888776 688888888888888888888888888


Q ss_pred             CcEeecccccCccccCCCC-------CCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCC
Q 015671          178 LNQIIHAVCHRLIAKTPNP-------TLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGN  250 (403)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  250 (403)
                      |++|++++|.... .+|..       ..+.++++|++|++++|.+. .+|..++.+++|+.|++++              
T Consensus       152 L~~L~L~~n~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~--------------  215 (328)
T 4fcg_A          152 LRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN--------------  215 (328)
T ss_dssp             CCEEEEEEETTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEES--------------
T ss_pred             CCEEECCCCCCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccC--------------
Confidence            8888888875444 55431       01222555555555555433 4444455555555555544              


Q ss_pred             CcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCC
Q 015671          251 ISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET  330 (403)
Q Consensus       251 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  330 (403)
                              |.++.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|
T Consensus       216 --------N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          216 --------SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             --------SCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             --------CCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence                    555567777788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCc-ccChhhhcCCCCCEEeccCC
Q 015671          331 NIE-RIPESIIQHFVLRYLLLSYS  353 (403)
Q Consensus       331 ~l~-~l~~~~~~~~~L~~L~l~~c  353 (403)
                      .+. .+|..++.+++|+.+.+..+
T Consensus       288 ~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          288 VNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             TTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CchhhccHHHhhccCceEEeCCHH
Confidence            766 78888888888888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=9.8e-26  Score=221.21  Aligned_cols=283  Identities=18%  Similarity=0.146  Sum_probs=182.9

Q ss_pred             CCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCC
Q 015671           86 SKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPEND  164 (403)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~  164 (403)
                      +......+.+..|..+++|++|++++|.+.+      ..+..+.. ++|++|++++|.++.+|.. .+++|++|++++|.
T Consensus        29 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~  101 (520)
T 2z7x_B           29 SQNYISELWTSDILSLSKLRILIISHNRIQY------LDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNA  101 (520)
T ss_dssp             CSSCCCCCCHHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSC
T ss_pred             CCCcccccChhhccccccccEEecCCCccCC------cChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCc
Confidence            3333334556677778888888888777641      22445555 7777777777777777766 67777777777777


Q ss_pred             ccc--cccccccCCCCcEeecccccCcc------------------------ccCCCCCCCCC-----------------
Q 015671          165 IEQ--LWDCVKHYSKLNQIIHAVCHRLI------------------------AKTPNPTLMPR-----------------  201 (403)
Q Consensus       165 ~~~--l~~~~~~l~~L~~L~l~~~~~~~------------------------~~~~~~~~~~~-----------------  201 (403)
                      +..  +|..++.+++|++|++++|....                        +..|  ..+..                 
T Consensus       102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~--~~l~~l~~~~l~l~l~~n~~~~  179 (520)
T 2z7x_B          102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFH  179 (520)
T ss_dssp             CSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCT--TTTTTCCEEEEEEECCSSSCCC
T ss_pred             cccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeeccccccccccc--ccccccccceEEEEeccCcchh
Confidence            765  45677777777777776653110                        0001  11111                 


Q ss_pred             ---------C---------------------------------------------------------CCCcEEEecCCCC
Q 015671          202 ---------L---------------------------------------------------------NKVVILNLRGSKS  215 (403)
Q Consensus       202 ---------l---------------------------------------------------------~~L~~L~l~~~~~  215 (403)
                               +                                                         ++|++|++++|.+
T Consensus       180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  259 (520)
T 2z7x_B          180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL  259 (520)
T ss_dssp             CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred             hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccc
Confidence                     1                                                         1455555555544


Q ss_pred             CCccCccC-----------------------------------------------------CCCCCCCEEeecCCCCCCC
Q 015671          216 LKSLPSEI-----------------------------------------------------FNLEFLTKLDLSGCSKLKR  242 (403)
Q Consensus       216 ~~~~~~~~-----------------------------------------------------~~l~~L~~L~l~~~~~~~~  242 (403)
                      .+.+|..+                                                     ..+++|++|++++|...+.
T Consensus       260 ~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~  339 (520)
T 2z7x_B          260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT  339 (520)
T ss_dssp             ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred             cCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh
Confidence            44444433                                                     4566677777777665554


Q ss_pred             Cccccc--CCCcEEEecCccCcc---cChhhhCCCCCCEEecccCcCCCcCCcc-ccCCCCCcEEeecCCCCCcccCccc
Q 015671          243 LPEISS--GNISWLFLTGTAIKE---LPSSIESLLRLEYLDLSDCKRLKSLPSS-LCKLKSLGVLNLYGCSNLQRLPECL  316 (403)
Q Consensus       243 ~~~~~~--~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l  316 (403)
                      .|..+.  ++|++|++++|.++.   +|..+..+++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+.+|..+
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  419 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL  419 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence            554443  777777777777763   3455677777888888877766655553 5667788888888877776666554


Q ss_pred             CCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhccc
Q 015671          317 GQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHT  382 (403)
Q Consensus       317 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~~~  382 (403)
                      .  ++|+.|++++|.++.+|..+..+++|+.|++++|+.. .+|..  .+..+++|+.+....+.+
T Consensus       420 ~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~--~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          420 P--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDG--IFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             C--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSCB
T ss_pred             c--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHH--HhccCCcccEEECcCCCC
Confidence            3  6888888888888888888888889999999888654 67764  345667776654444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.7e-25  Score=215.86  Aligned_cols=254  Identities=17%  Similarity=0.157  Sum_probs=204.3

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC-CCC-CCC-CCCCceEEEccCCCcccc-ccccccCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK-SFP-SNL-SAEKLVLFEVPENDIEQL-WDCVKHYS  176 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~-~lp-~~~-~l~~L~~L~l~~~~~~~l-~~~~~~l~  176 (403)
                      ++|++|++++|.+.      ...+..+.. ++|++|++++|.+. .++ ..+ .+++|++|++++|.+..+ |..++.++
T Consensus        30 ~~l~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  103 (455)
T 3v47_A           30 AHVNYVDLSLNSIA------ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA  103 (455)
T ss_dssp             TTCCEEECCSSCCC------EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred             CccCEEEecCCccC------cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence            78999999999874      233566666 99999999999875 554 445 799999999999999876 67899999


Q ss_pred             CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCcc-CCCCCCCCEEeecCCCCCCCCccccc-------
Q 015671          177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSE-IFNLEFLTKLDLSGCSKLKRLPEISS-------  248 (403)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~-------  248 (403)
                      +|++|++++|. +.+.++....+.++++|++|++++|.+.+..|.. +..+++|++|++++|......+....       
T Consensus       104 ~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L  182 (455)
T 3v47_A          104 NLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF  182 (455)
T ss_dssp             TCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred             cCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence            99999999993 3313343345889999999999999977776765 78999999999999875554433211       


Q ss_pred             -----------------------------CCCcEEEecCccCcc-cChhhh-----------------------------
Q 015671          249 -----------------------------GNISWLFLTGTAIKE-LPSSIE-----------------------------  269 (403)
Q Consensus       249 -----------------------------~~L~~L~l~~~~~~~-l~~~~~-----------------------------  269 (403)
                                                   ++|++|++++|.++. .|..+.                             
T Consensus       183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  262 (455)
T 3v47_A          183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK  262 (455)
T ss_dssp             EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred             cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence                                         467888888877652 222211                             


Q ss_pred             ----------CCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc-Chh
Q 015671          270 ----------SLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI-PES  338 (403)
Q Consensus       270 ----------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~  338 (403)
                                ..++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+.++++|+.|++++|.++.+ |..
T Consensus       263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  342 (455)
T 3v47_A          263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM  342 (455)
T ss_dssp             CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred             cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence                      125899999999998888888899999999999999999888888999999999999999999965 567


Q ss_pred             hhcCCCCCEEeccCCcCCCcCCCC
Q 015671          339 IIQHFVLRYLLLSYSERLQSLPSP  362 (403)
Q Consensus       339 ~~~~~~L~~L~l~~c~~l~~lp~~  362 (403)
                      +..+++|+.|++++|...+..|..
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~~~~~  366 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRALGDQS  366 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTT
T ss_pred             hcCcccCCEEECCCCcccccChhh
Confidence            899999999999999876665653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=2.9e-26  Score=234.51  Aligned_cols=260  Identities=17%  Similarity=0.180  Sum_probs=174.1

Q ss_pred             hhhhcCCCCCcEEEEeccC-CCC-CCccccccc-CCCCC-CCeeEEEecCCCCCCCCC--CC-CCCCceEEEccCCCccc
Q 015671           95 PSTFTKMPKLRFLKFYSSS-FNG-ENKCKMSYL-QDPGF-AEVKYLHWHGYPLKSFPS--NL-SAEKLVLFEVPENDIEQ  167 (403)
Q Consensus        95 ~~~~~~~~~Lr~L~l~~~~-~~~-~~~~~~~~~-~~l~~-~~L~~L~l~~~~~~~lp~--~~-~l~~L~~L~l~~~~~~~  167 (403)
                      |..|.++++|++|++++|. +.| ..|...... ..+.. ++|++|++++|.+..+|.  .+ .+++|++|++++|.+..
T Consensus       508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~  587 (876)
T 4ecn_A          508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH  587 (876)
T ss_dssp             CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB
T ss_pred             hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc
Confidence            5667777777777777776 543 222211111 12223 578888888877777777  44 67778888888887777


Q ss_pred             cccccccCCCCcEeecccccCccccCCCCCCCCCCCC-CcEEEecCCCCCCccCccCCCCCC--CCEEeecCCCCCCCCc
Q 015671          168 LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK-VVILNLRGSKSLKSLPSEIFNLEF--LTKLDLSGCSKLKRLP  244 (403)
Q Consensus       168 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~  244 (403)
                      +| .++.+++|+.|++++|. +. .+|.  .+.++++ |+.|++++|.+. .+|..+..++.  |+.|++++|...+..|
T Consensus       588 lp-~~~~L~~L~~L~Ls~N~-l~-~lp~--~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip  661 (876)
T 4ecn_A          588 LE-AFGTNVKLTDLKLDYNQ-IE-EIPE--DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR  661 (876)
T ss_dssp             CC-CCCTTSEESEEECCSSC-CS-CCCT--TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred             ch-hhcCCCcceEEECcCCc-cc-cchH--HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence            77 77777788888887773 33 4442  4666777 788888877754 66666655543  7777777776655444


Q ss_pred             cccc-------CCCcEEEecCccCcccChhh-hCCCCCCEEecccCcCCCcCCccccC--------CCCCcEEeecCCCC
Q 015671          245 EISS-------GNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCK--------LKSLGVLNLYGCSN  308 (403)
Q Consensus       245 ~~~~-------~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~  308 (403)
                      ....       ++|+.|++++|.++.+|..+ ..+++|+.|++++|.+. .+|..+..        +++|+.|+|++|.+
T Consensus       662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L  740 (876)
T 4ecn_A          662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL  740 (876)
T ss_dssp             SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred             cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC
Confidence            3321       47778888888887777665 36778888888887755 55554332        23788888887766


Q ss_pred             CcccCcccC--CCCCCCEEEccCCCCcccChhhhcCCCCCEEeccC------CcCCCcCCCC
Q 015671          309 LQRLPECLG--QLSSPITLGLTETNIERIPESIIQHFVLRYLLLSY------SERLQSLPSP  362 (403)
Q Consensus       309 ~~~~~~~l~--~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~------c~~l~~lp~~  362 (403)
                      . .+|..+.  .+++|+.|++++|.++.+|..+..+++|+.|++++      |...+.+|..
T Consensus       741 ~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~  801 (876)
T 4ecn_A          741 T-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG  801 (876)
T ss_dssp             C-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred             c-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence            5 6666665  77788888888888777777777777888887765      5556666653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=3.2e-27  Score=216.42  Aligned_cols=251  Identities=15%  Similarity=0.167  Sum_probs=179.0

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecC-CCCC-CCCCCC-CCCCceEEEccCCCcc-ccccccccCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLK-SFPSNL-SAEKLVLFEVPENDIE-QLWDCVKHYS  176 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~-~~~~-~lp~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~  176 (403)
                      .+++.|+++++.+.|.    ..+|..+.. ++|++|++++ +.+. .+|..+ .+++|++|++++|.+. .+|..+..++
T Consensus        50 ~~l~~L~L~~~~l~~~----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCC----cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            5778888888877531    134455555 7888888874 6654 566666 6788888888888887 5677788888


Q ss_pred             CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCC-CCCEEeecCCCCCCCCccccc-CCCcEE
Q 015671          177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLE-FLTKLDLSGCSKLKRLPEISS-GNISWL  254 (403)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~-~~L~~L  254 (403)
                      +|++|++++|. +.+.+|  ..+.++++|++|++++|.+.+.+|..++.++ +|+.|++++|...+..|..+. ..|+.|
T Consensus       126 ~L~~L~Ls~N~-l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L  202 (313)
T 1ogq_A          126 TLVTLDFSYNA-LSGTLP--PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV  202 (313)
T ss_dssp             TCCEEECCSSE-EESCCC--GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE
T ss_pred             CCCEEeCCCCc-cCCcCC--hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEE
Confidence            88888888873 221333  3566778888888888877667777777777 788888888765555555544 447778


Q ss_pred             EecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          255 FLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       255 ~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      ++++|.++ ..|..+..+++|+.|++++|.+.+.+|. +..+++|+.|++++|.+.+.+|.++..+++|+.|++++|.++
T Consensus       203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            88777776 3445667778888888888776655554 666778888888887777777777778888888888888877


Q ss_pred             -ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          334 -RIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       334 -~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                       .+|.. ..+++|+.|++++|+.+...|.
T Consensus       282 ~~ip~~-~~l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          282 GEIPQG-GNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             EECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred             ccCCCC-ccccccChHHhcCCCCccCCCC
Confidence             56654 6777788888888876555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=1.3e-25  Score=224.41  Aligned_cols=268  Identities=17%  Similarity=0.120  Sum_probs=181.9

Q ss_pred             CCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEcc
Q 015671           85 MSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVP  161 (403)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~  161 (403)
                      +.......+.+..|..+++|++|++++|.+.       .+|..+.. ++|++|++++|.+..+ |..+ .+++|++|+++
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCccC-------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            3333334445566777777777877777662       45556665 7777777777777766 3334 57777777777


Q ss_pred             CCCcc-cccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCC
Q 015671          162 ENDIE-QLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK  239 (403)
Q Consensus       162 ~~~~~-~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  239 (403)
                      +|.+. .++. .+..+++|++|++++|.... .......+..+++|++|++++|.+.+..|..++.+++|+.|++++|..
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCcccc-ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            77765 4443 46777778888777773221 211123567777788888887776666666677778888888877765


Q ss_pred             CCCCccc-cc--CCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCc---CCccccCCCCCcEEeecCCCCCccc
Q 015671          240 LKRLPEI-SS--GNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKS---LPSSLCKLKSLGVLNLYGCSNLQRL  312 (403)
Q Consensus       240 ~~~~~~~-~~--~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~  312 (403)
                      ....+.. +.  ++|+.|++++|.++.. |..+..+++|+.|++++|.+.+.   .+..+..+++|+.|++++|.+.+..
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence            5444432 22  7788888888777744 45567778888888888876552   2245677788888888888777777


Q ss_pred             CcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          313 PECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       313 ~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      |..+..+++|+.|++++|.++ ..|..+..++.| .|++++|...+..|.
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~  541 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS  541 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred             hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence            777788888888888888877 455677777888 888888876654444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=5.8e-25  Score=217.72  Aligned_cols=290  Identities=17%  Similarity=0.115  Sum_probs=208.2

Q ss_pred             CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCC
Q 015671           76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEK  154 (403)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~  154 (403)
                      ..++.+.  ++......+.+..|..+++|++|++++|.+.      ...+..+.. ++|++|++++|.++.+|.. .+++
T Consensus        52 ~~L~~L~--Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~  122 (562)
T 3a79_B           52 PRTKALS--LSQNSISELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMAS  122 (562)
T ss_dssp             TTCCEEE--CCSSCCCCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTT
T ss_pred             CCcCEEE--CCCCCccccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCCCCEEECCCCcCCccCcc-cccc
Confidence            3455543  4444444566788999999999999999874      223455666 9999999999999999887 8999


Q ss_pred             ceEEEccCCCccccc--cccccCCCCcEeecccccCccccCCCCCCCCCC------------------------------
Q 015671          155 LVLFEVPENDIEQLW--DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRL------------------------------  202 (403)
Q Consensus       155 L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l------------------------------  202 (403)
                      |++|++++|.+..++  ..++++++|++|++++|....   ..+..+.++                              
T Consensus       123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l  199 (562)
T 3a79_B          123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL  199 (562)
T ss_dssp             CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred             CCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence            999999999998764  688999999999998874211   000111111                              


Q ss_pred             ----------------------------------------------------------------------------CCCc
Q 015671          203 ----------------------------------------------------------------------------NKVV  206 (403)
Q Consensus       203 ----------------------------------------------------------------------------~~L~  206 (403)
                                                                                                  ++|+
T Consensus       200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~  279 (562)
T 3a79_B          200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE  279 (562)
T ss_dssp             EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred             EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence                                                                                        1344


Q ss_pred             EEEecCCCCCCccCccC-----------------------------------------------------CCCCCCCEEe
Q 015671          207 ILNLRGSKSLKSLPSEI-----------------------------------------------------FNLEFLTKLD  233 (403)
Q Consensus       207 ~L~l~~~~~~~~~~~~~-----------------------------------------------------~~l~~L~~L~  233 (403)
                      +|++++|.+.+.+|..+                                                     +.+++|+.|+
T Consensus       280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  359 (562)
T 3a79_B          280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN  359 (562)
T ss_dssp             EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred             EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEE
Confidence            45555444444444433                                                     5667788888


Q ss_pred             ecCCCCCCCCccccc--CCCcEEEecCccCcccC---hhhhCCCCCCEEecccCcCCCcCCc-cccCCCCCcEEeecCCC
Q 015671          234 LSGCSKLKRLPEISS--GNISWLFLTGTAIKELP---SSIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCS  307 (403)
Q Consensus       234 l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~  307 (403)
                      +++|...+..|..+.  ++|+.|++++|.++.++   ..+..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.
T Consensus       360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~  439 (562)
T 3a79_B          360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM  439 (562)
T ss_dssp             CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence            888766665555444  78888888888887654   4567888888888888887775655 36678888888888888


Q ss_pred             CCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhccc
Q 015671          308 NLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHT  382 (403)
Q Consensus       308 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~~~  382 (403)
                      +.+.+|..+.  ++|+.|++++|.++.+|..+..+++|+.|++++|... .+|..  .+..+++|+.+....+.+
T Consensus       440 l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~--~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          440 LTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDG--VFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTT--STTTCTTCCCEECCSCCB
T ss_pred             CCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHH--HHhcCCCCCEEEecCCCc
Confidence            7776665443  6899999999999999988889999999999998755 67764  345677777755544443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.1e-25  Score=216.47  Aligned_cols=269  Identities=18%  Similarity=0.148  Sum_probs=169.3

Q ss_pred             ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC--CCC
Q 015671           77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL--SAE  153 (403)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~--~l~  153 (403)
                      .++.+.  ++......+.+..|..+++|++|++++|.+.      ...+..+.. ++|++|++++|.+..+|...  .++
T Consensus        33 ~l~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  104 (477)
T 2id5_A           33 ETRLLD--LGKNRIKTLNQDEFASFPHLEELELNENIVS------AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS  104 (477)
T ss_dssp             TCSEEE--CCSSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred             CCcEEE--CCCCccceECHhHccCCCCCCEEECCCCccC------EeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence            344433  3333334455677888888888888888764      223455666 88888888888888887543  688


Q ss_pred             CceEEEccCCCcccc-ccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEE
Q 015671          154 KLVLFEVPENDIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKL  232 (403)
Q Consensus       154 ~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (403)
                      +|++|++++|.+..+ +..+..+++|++|++++|. +. .++ ...+.++++|++|++++|.+....+..+..+++|+.|
T Consensus       105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  181 (477)
T 2id5_A          105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LV-YIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL  181 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CC-EEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred             CCCEEECCCCccccCChhHccccccCCEEECCCCc-cc-eeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence            888888888888765 4567788888888888773 22 121 2345666666777776665433322334444455555


Q ss_pred             eec------------------------CCCCCCCCccccc--CCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCC
Q 015671          233 DLS------------------------GCSKLKRLPEISS--GNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRL  285 (403)
Q Consensus       233 ~l~------------------------~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~  285 (403)
                      +++                        +|.....++....  .+|+.|++++|.++.+|. .+..+++|+.|++++|.+.
T Consensus       182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence            444                        4444444333322  466666666666666663 4566666777777766655


Q ss_pred             CcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671          286 KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       286 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l  356 (403)
                      +..+..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            5555556666677777777666666666666666777777777776665554 3455666777777666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=6.8e-26  Score=227.14  Aligned_cols=246  Identities=15%  Similarity=0.120  Sum_probs=138.5

Q ss_pred             CCCcEEEEeccCCCCCCcccccccC--CCCC-CCeeEEEecCCCCC-CCCCCC-CCCCceEEEccCCCccccccccccCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQ--DPGF-AEVKYLHWHGYPLK-SFPSNL-SAEKLVLFEVPENDIEQLWDCVKHYS  176 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~--~l~~-~~L~~L~l~~~~~~-~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~  176 (403)
                      ++|++|++++|.+.       .+|.  .+.. ++|++|++++|.+. .+| .+ .+++|++|++++|.+..+|..+..++
T Consensus       305 ~~L~~L~L~~n~l~-------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~  376 (636)
T 4eco_A          305 EKIQIIYIGYNNLK-------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFT  376 (636)
T ss_dssp             GTCCEEECCSSCCS-------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEEC
T ss_pred             CCCCEEECCCCcCC-------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhc
Confidence            66666666666652       3444  4444 66666666666666 666 34 56666666666666666666666666


Q ss_pred             C-CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCC-------CCCCCCEEeecCCCCCCCCccccc
Q 015671          177 K-LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF-------NLEFLTKLDLSGCSKLKRLPEISS  248 (403)
Q Consensus       177 ~-L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~  248 (403)
                      + |++|++++| .+. .+|.......+++|+.|++++|.+.+..|..+.       .+++|+.|++++|... .+|....
T Consensus       377 ~~L~~L~Ls~N-~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~  453 (636)
T 4eco_A          377 EQVENLSFAHN-KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELF  453 (636)
T ss_dssp             TTCCEEECCSS-CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHH
T ss_pred             ccCcEEEccCC-cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHH
Confidence            6 666666666 233 444311111233566666666666555555554       5556666666664433 4443322


Q ss_pred             ---CCCcEEEecCccCcccChhhhCC--------CCCCEEecccCcCCCcCCcccc--CCCCCcEEeecCCCCCcccCcc
Q 015671          249 ---GNISWLFLTGTAIKELPSSIESL--------LRLEYLDLSDCKRLKSLPSSLC--KLKSLGVLNLYGCSNLQRLPEC  315 (403)
Q Consensus       249 ---~~L~~L~l~~~~~~~l~~~~~~l--------~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~  315 (403)
                         ++|++|++++|.++.+|..+...        ++|+.|++++|.+. .+|..+.  .+++|+.|++++|.+.+ +|..
T Consensus       454 ~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~  531 (636)
T 4eco_A          454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ  531 (636)
T ss_dssp             HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred             ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence               55666666666666555433221        15666666666544 4555554  56666666666655555 5555


Q ss_pred             cCCCCCCCEEEcc------CCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          316 LGQLSSPITLGLT------ETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       316 l~~l~~L~~L~l~------~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      +..+++|+.|+++      +|.+. .+|..+..+++|+.|++++|.. +.+|.
T Consensus       532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~  583 (636)
T 4eco_A          532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE  583 (636)
T ss_dssp             GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence            5566666666663      33333 5555566666666666666655 55555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1.6e-26  Score=231.66  Aligned_cols=269  Identities=17%  Similarity=0.203  Sum_probs=187.1

Q ss_pred             hhhhcCCCCCcEEEEeccC-CCC-CCcccccccCCCCC-CCeeEEEecCCCCCCCCC--CC-CCCCceEEEccCCCcc-c
Q 015671           95 PSTFTKMPKLRFLKFYSSS-FNG-ENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPS--NL-SAEKLVLFEVPENDIE-Q  167 (403)
Q Consensus        95 ~~~~~~~~~Lr~L~l~~~~-~~~-~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~--~~-~l~~L~~L~l~~~~~~-~  167 (403)
                      |..|.++++|++|++++|. +.| ..|........+.. ++|++|++++|.++.+|.  .+ .+++|++|++++|.+. .
T Consensus       266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~  345 (636)
T 4eco_A          266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK  345 (636)
T ss_dssp             CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred             hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc
Confidence            4555666666666666665 432 22211111001111 567777777777666766  44 5677777777777776 5


Q ss_pred             cccccccCCCCcEeecccccCccccCCCCCCCCCCCC-CcEEEecCCCCCCccCccCCCCC--CCCEEeecCCCCCCCCc
Q 015671          168 LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK-VVILNLRGSKSLKSLPSEIFNLE--FLTKLDLSGCSKLKRLP  244 (403)
Q Consensus       168 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~  244 (403)
                      +| .+..+++|+.|++++| .+. .+|.  .+.++++ |++|++++|.+. .+|..++.++  +|+.|++++|...+..|
T Consensus       346 ip-~~~~l~~L~~L~L~~N-~l~-~lp~--~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          346 LP-AFGSEIKLASLNLAYN-QIT-EIPA--NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             CC-CCEEEEEESEEECCSS-EEE-ECCT--TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             hh-hhCCCCCCCEEECCCC-ccc-cccH--hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence            66 6667777777777776 333 4443  4667777 888888887755 6777665544  78888888877666555


Q ss_pred             cccc---------CCCcEEEecCccCcccChhh-hCCCCCCEEecccCcCCCcCCccccC--------CCCCcEEeecCC
Q 015671          245 EISS---------GNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCK--------LKSLGVLNLYGC  306 (403)
Q Consensus       245 ~~~~---------~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~  306 (403)
                      ..+.         .+|+.|++++|.++.+|..+ ..+++|+.|++++|.+. .+|.....        +++|+.|++++|
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred             hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence            4322         58889999999999888765 45899999999999876 66654332        238999999998


Q ss_pred             CCCcccCcccC--CCCCCCEEEccCCCCcccChhhhcCCCCCEEecc------CCcCCCcCCCCeEeccCCCCCCC
Q 015671          307 SNLQRLPECLG--QLSSPITLGLTETNIERIPESIIQHFVLRYLLLS------YSERLQSLPSPLFLARGCLAMQP  374 (403)
Q Consensus       307 ~~~~~~~~~l~--~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~------~c~~l~~lp~~~l~i~~c~~l~~  374 (403)
                      .+. .+|..+.  .+++|+.|++++|.++.+|..+..+++|+.|+++      +|...+.+|..   +..|++|+.
T Consensus       499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~---l~~l~~L~~  570 (636)
T 4eco_A          499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG---ITLCPSLTQ  570 (636)
T ss_dssp             CCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT---GGGCSSCCE
T ss_pred             cCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH---HhcCCCCCE
Confidence            877 6887776  8999999999999999999999999999999994      56667788875   234455554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=2.4e-25  Score=222.52  Aligned_cols=270  Identities=21%  Similarity=0.176  Sum_probs=174.4

Q ss_pred             ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCC
Q 015671           77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSF-PSNL-SAE  153 (403)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~  153 (403)
                      .++.+.  ++......+.+..|.++++||+|++++|.+.      ...+..+.. ++|++|++++|.+..+ |..+ .++
T Consensus        34 ~l~~L~--Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  105 (606)
T 3t6q_A           34 STECLE--FSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK  105 (606)
T ss_dssp             TCCEEE--CTTCCCSEECTTTSTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred             cCcEEE--ccCCccCcCChhHhccCccceEEECCCCccc------eeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence            445544  3444444556778899999999999998764      233556666 8899999999888766 4455 688


Q ss_pred             CceEEEccCCCcccc-ccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC--
Q 015671          154 KLVLFEVPENDIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT--  230 (403)
Q Consensus       154 ~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--  230 (403)
                      +|++|++++|.+..+ +..++.+++|++|++++|. +. .++. ..+..+++|++|++++|.+.+..+..++.+++|+  
T Consensus       106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~-~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l  182 (606)
T 3t6q_A          106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-IS-SIKL-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL  182 (606)
T ss_dssp             TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CC-CCCC-CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred             cccEeeccccCcccCCcchhccCCcccEEECCCCc-cc-ccCc-ccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence            999999999988887 5678888999999998883 33 2221 2333477888888888776554455556666666  


Q ss_pred             EEeecCCCCCCCC-------------------------------------------------------------------
Q 015671          231 KLDLSGCSKLKRL-------------------------------------------------------------------  243 (403)
Q Consensus       231 ~L~l~~~~~~~~~-------------------------------------------------------------------  243 (403)
                      .|++++|...+..                                                                   
T Consensus       183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~  262 (606)
T 3t6q_A          183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ  262 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred             EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence            5666554322111                                                                   


Q ss_pred             -------ccc-cc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccC
Q 015671          244 -------PEI-SS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLP  313 (403)
Q Consensus       244 -------~~~-~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  313 (403)
                             +.. +.  ++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++
T Consensus       263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  342 (606)
T 3t6q_A          263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG  342 (606)
T ss_dssp             TCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred             cCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence                   111 11  56666777766666666666666777777777766555555556666666666666665554444


Q ss_pred             c-ccCCCCCCCEEEccCCCCccc---ChhhhcCCCCCEEeccCCcCCC
Q 015671          314 E-CLGQLSSPITLGLTETNIERI---PESIIQHFVLRYLLLSYSERLQ  357 (403)
Q Consensus       314 ~-~l~~l~~L~~L~l~~~~l~~l---~~~~~~~~~L~~L~l~~c~~l~  357 (403)
                      . .+..+++|+.|++++|.++.+   +..+..+++|++|++++|...+
T Consensus       343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  390 (606)
T 3t6q_A          343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS  390 (606)
T ss_dssp             SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred             hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence            3 255666666666666666533   4445566666666666665443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=3.3e-25  Score=215.09  Aligned_cols=231  Identities=16%  Similarity=0.169  Sum_probs=161.2

Q ss_pred             cChhhhcCCCCCcEEEEeccCCCCCCcccccccCC-CCC-CCeeEEEecCCCCCCCC-C---------------------
Q 015671           93 LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQD-PGF-AEVKYLHWHGYPLKSFP-S---------------------  148 (403)
Q Consensus        93 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~-~~L~~L~l~~~~~~~lp-~---------------------  148 (403)
                      +.+..|.++++|++|++++|.+.       .++.. +.. ++|++|++++|.+..++ .                     
T Consensus        71 ~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  143 (477)
T 2id5_A           71 VEPGAFNNLFNLRTLGLRSNRLK-------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI  143 (477)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCC-------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred             eChhhhhCCccCCEEECCCCcCC-------ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence            44556666666777777666553       22222 222 45555555555444332 2                     


Q ss_pred             ---CC-CCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccC
Q 015671          149 ---NL-SAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEI  223 (403)
Q Consensus       149 ---~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  223 (403)
                         .+ .+++|++|++++|.+..++. .+..+++|+.|++++|. +. .++ ...+.++++|+.|++++|...+.++...
T Consensus       144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~-~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~  220 (477)
T 2id5_A          144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-IN-AIR-DYSFKRLYRLKVLEISHWPYLDTMTPNC  220 (477)
T ss_dssp             CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CC-EEC-TTCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred             ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-Cc-EeC-hhhcccCcccceeeCCCCccccccCccc
Confidence               22 34455555555555544432 34555555555555552 22 121 2356778888999998888888888777


Q ss_pred             CCCCCCCEEeecCCCCCCCCccc-cc--CCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCCCcCCccccCCCCCc
Q 015671          224 FNLEFLTKLDLSGCSKLKRLPEI-SS--GNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLG  299 (403)
Q Consensus       224 ~~l~~L~~L~l~~~~~~~~~~~~-~~--~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  299 (403)
                      ....+|+.|++++|.. +.+|.. +.  ++|+.|++++|.++.++. .+..+++|+.|++++|.+.+..|..+..+++|+
T Consensus       221 ~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (477)
T 2id5_A          221 LYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR  299 (477)
T ss_dssp             TTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred             ccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence            6777999999999754 455532 22  899999999999997764 578899999999999998888888899999999


Q ss_pred             EEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671          300 VLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER  334 (403)
Q Consensus       300 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~  334 (403)
                      .|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             EEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            99999998887777778999999999999999883

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1e-24  Score=206.16  Aligned_cols=262  Identities=13%  Similarity=0.106  Sum_probs=186.9

Q ss_pred             ecChhhhcCCCCCcEEEEeccCCCCCCccccccc-CCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCccc
Q 015671           92 RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYL-QDPGF-AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQ  167 (403)
Q Consensus        92 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~  167 (403)
                      .+....|..+++|++|++++|.+.       .++ ..+.. ++|++|++++|.+..++.. + .+++|++|++++|.+..
T Consensus        59 ~l~~~~~~~l~~L~~L~L~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  131 (390)
T 3o6n_A           59 KLPAALLDSFRQVELLNLNDLQIE-------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS  131 (390)
T ss_dssp             EECTHHHHHCCCCSEEECTTSCCC-------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             hCChhHhcccccCcEEECCCCccc-------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc
Confidence            345566788899999999988763       333 35555 8899999999888887544 4 68889999999998888


Q ss_pred             cccc-cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCC-------
Q 015671          168 LWDC-VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK-------  239 (403)
Q Consensus       168 l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------  239 (403)
                      +|.. +..+++|++|++++|. +. .++ ...+.++++|++|++++|.+... +  ++.+++|+.|++++|..       
T Consensus       132 l~~~~~~~l~~L~~L~L~~n~-l~-~~~-~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~  205 (390)
T 3o6n_A          132 LPRGIFHNTPKLTTLSMSNNN-LE-RIE-DDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPI  205 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CC-BCC-TTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCS
T ss_pred             CCHHHhcCCCCCcEEECCCCc-cC-ccC-hhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccccCCCC
Confidence            8765 5788999999998883 33 222 23577888889999988875433 2  33455555555554321       


Q ss_pred             -----------CCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCC
Q 015671          240 -----------LKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSN  308 (403)
Q Consensus       240 -----------~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  308 (403)
                                 +..+|....++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       206 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          206 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  284 (390)
T ss_dssp             SCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred             cceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence                       2222332236778888888777765 4677888888888888887777777788888888888888766


Q ss_pred             CcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCC
Q 015671          309 LQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQP  374 (403)
Q Consensus       309 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~  374 (403)
                      .+ ++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.. .+|     +..+++|+.
T Consensus       285 ~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~-----~~~~~~L~~  343 (390)
T 3o6n_A          285 VA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLK-----LSTHHTLKN  343 (390)
T ss_dssp             CE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC-CCC-----CCTTCCCSE
T ss_pred             cc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc-eeC-----chhhccCCE
Confidence            54 455567788888888888888888877888888888888888653 333     334555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.6e-25  Score=206.42  Aligned_cols=225  Identities=22%  Similarity=0.326  Sum_probs=182.9

Q ss_pred             CCceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-CC
Q 015671           75 TEKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SA  152 (403)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l  152 (403)
                      ...++.+.+....+.   ..+..+.++++|++|++++|.+.       .+|..+.. ++|++|++++|.+..+|..+ .+
T Consensus        80 ~~~l~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~n~l~-------~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLM-------ELPDTMQQFAGLETLTLARNPLRALPASIASL  149 (328)
T ss_dssp             STTCCEEEEESSCCS---SCCSCGGGGTTCSEEEEESSCCC-------CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred             ccceeEEEccCCCch---hcChhhhhCCCCCEEECCCCCcc-------chhHHHhccCCCCEEECCCCccccCcHHHhcC
Confidence            456667666555544   22455777999999999999873       56677777 99999999999999999877 79


Q ss_pred             CCceEEEccCCCc-cccccccc---------cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCcc
Q 015671          153 EKLVLFEVPENDI-EQLWDCVK---------HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSE  222 (403)
Q Consensus       153 ~~L~~L~l~~~~~-~~l~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  222 (403)
                      ++|++|++++|.+ ..+|..+.         .+++|++|++++| .+. .+|.  .+.++++|++|++++|.+. .+|+.
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~-~lp~--~l~~l~~L~~L~L~~N~l~-~l~~~  224 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR-SLPA--SIANLQNLKSLKIRNSPLS-ALGPA  224 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC-CCCG--GGGGCTTCCEEEEESSCCC-CCCGG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC-cchH--hhcCCCCCCEEEccCCCCC-cCchh
Confidence            9999999999654 45676654         4999999999998 444 5553  5788999999999999865 57777


Q ss_pred             CCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEe
Q 015671          223 IFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLN  302 (403)
Q Consensus       223 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  302 (403)
                      ++.+++|+.|++++|...+.                     +|..++.+++|+.|++++|...+.+|..+.++++|+.|+
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~---------------------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRN---------------------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCB---------------------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             hccCCCCCEEECcCCcchhh---------------------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence            88999999999999765543                     455677888999999999988899998888999999999


Q ss_pred             ecCCCCCcccCcccCCCCCCCEEEccCCCCccc
Q 015671          303 LYGCSNLQRLPECLGQLSSPITLGLTETNIERI  335 (403)
Q Consensus       303 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l  335 (403)
                      +++|+..+.+|+++..+++|+.+.+..+.+..+
T Consensus       284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             CTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred             CCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence            999999999999999999999998887655433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=3.6e-25  Score=226.48  Aligned_cols=247  Identities=14%  Similarity=0.098  Sum_probs=137.1

Q ss_pred             CCCCCcEEEEeccCCCCCCcccccccC--CCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCC
Q 015671          100 KMPKLRFLKFYSSSFNGENKCKMSYLQ--DPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYS  176 (403)
Q Consensus       100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~--~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  176 (403)
                      .+++|++|++++|.+.       .+|.  .+.. ++|+.|++++|.+..+|....+++|++|++++|.+..+|..+..++
T Consensus       546 ~l~~L~~L~Ls~N~L~-------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~  618 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLE-------EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFT  618 (876)
T ss_dssp             TTTTCCEEECCSSCCC-------BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEEC
T ss_pred             ccCCccEEEeeCCcCC-------ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhcc
Confidence            3446666666666652       4444  4444 6666666666666666622256666666666666666666666666


Q ss_pred             C-CcEeecccccCccccCCCCCCCCCC--CCCcEEEecCCCCCCccCc---cCC--CCCCCCEEeecCCCCCCCCccccc
Q 015671          177 K-LNQIIHAVCHRLIAKTPNPTLMPRL--NKVVILNLRGSKSLKSLPS---EIF--NLEFLTKLDLSGCSKLKRLPEISS  248 (403)
Q Consensus       177 ~-L~~L~l~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~---~~~--~l~~L~~L~l~~~~~~~~~~~~~~  248 (403)
                      + |+.|++++|. +. .+|.  .+..+  ++|+.|++++|.+.+.+|.   .++  .+++|+.|++++|... .+|....
T Consensus       619 ~~L~~L~Ls~N~-L~-~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~  693 (876)
T 4ecn_A          619 DQVEGLGFSHNK-LK-YIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELF  693 (876)
T ss_dssp             TTCCEEECCSSC-CC-SCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHH
T ss_pred             ccCCEEECcCCC-CC-cCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHH
Confidence            6 6666666662 33 4443  22322  3366666666655443332   111  2335666666664433 4444322


Q ss_pred             ---CCCcEEEecCccCcccChhhhCC--------CCCCEEecccCcCCCcCCcccc--CCCCCcEEeecCCCCCcccCcc
Q 015671          249 ---GNISWLFLTGTAIKELPSSIESL--------LRLEYLDLSDCKRLKSLPSSLC--KLKSLGVLNLYGCSNLQRLPEC  315 (403)
Q Consensus       249 ---~~L~~L~l~~~~~~~l~~~~~~l--------~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~  315 (403)
                         ++|+.|++++|.++.+|..+...        ++|+.|++++|.+. .+|..+.  .+++|+.|+|++|.+.+ +|..
T Consensus       694 ~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~  771 (876)
T 4ecn_A          694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ  771 (876)
T ss_dssp             HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred             ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh
Confidence               56666666666666555443222        15666666666544 4555554  56666666666655554 5555


Q ss_pred             cCCCCCCCEEEccC------CCCc-ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          316 LGQLSSPITLGLTE------TNIE-RIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       316 l~~l~~L~~L~l~~------~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      +..+++|+.|++++      |.+. .+|..+..+++|+.|++++|.. +.+|.
T Consensus       772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~  823 (876)
T 4ecn_A          772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE  823 (876)
T ss_dssp             GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred             hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence            55666666666654      3333 5555566666666666666655 55555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=3.8e-25  Score=205.74  Aligned_cols=258  Identities=15%  Similarity=0.167  Sum_probs=186.9

Q ss_pred             ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCc
Q 015671           77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKL  155 (403)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L  155 (403)
                      .++.+.+....+..+    ..+..+++|++|++++|.+.       .++. +.. ++|++|++++|.+..+|....+++|
T Consensus        45 ~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~-------~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L  112 (347)
T 4fmz_A           45 SITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQIT-------DISP-LSNLVKLTNLYIGTNKITDISALQNLTNL  112 (347)
T ss_dssp             TCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCC-------CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred             cccEEEEeCCccccc----hhhhhcCCccEEEccCCccc-------cchh-hhcCCcCCEEEccCCcccCchHHcCCCcC
Confidence            445544444333222    24778899999999998874       2222 445 8899999999998888765578999


Q ss_pred             eEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeec
Q 015671          156 VLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLS  235 (403)
Q Consensus       156 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  235 (403)
                      ++|++++|.+..++. +..+++|++|++++|.... .++   .+..+++|++|++++|.+.. ++. +..+++|+.|+++
T Consensus       113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~-~~~---~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~  185 (347)
T 4fmz_A          113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLS-DLS---PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLN  185 (347)
T ss_dssp             SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCC-CCG---GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECT
T ss_pred             CEEECcCCcccCchh-hccCCceeEEECCCCCCcc-ccc---chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEcc
Confidence            999999999888866 7889999999999885443 333   46778888999998877543 333 6788888899888


Q ss_pred             CCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCc
Q 015671          236 GCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE  314 (403)
Q Consensus       236 ~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  314 (403)
                      +|.. ..++.... ++|+.+++++|.++.++. +..+++|+.|++++|.+... +. +..+++|+.|++++|.+.+.  +
T Consensus       186 ~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~  259 (347)
T 4fmz_A          186 YNQI-EDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--N  259 (347)
T ss_dssp             TSCC-CCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--G
T ss_pred             CCcc-cccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--h
Confidence            8654 34444333 888888888888776655 67788888888888875543 33 67788888888888766543  3


Q ss_pred             ccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCC
Q 015671          315 CLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLP  360 (403)
Q Consensus       315 ~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp  360 (403)
                      .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+..+..|
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~  304 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDM  304 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred             hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcCh
Confidence            5777888888888888888764 46777888888888887654443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.1e-24  Score=217.18  Aligned_cols=251  Identities=13%  Similarity=0.103  Sum_probs=188.5

Q ss_pred             ecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCcccc
Q 015671           92 RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQL  168 (403)
Q Consensus        92 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~l  168 (403)
                      .+.+..|..+++|++|++++|.+.+      ..+..+.. ++|++|++++|.+..+|.. + .+++|++|++++|.+..+
T Consensus        65 ~lp~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l  138 (597)
T 3oja_B           65 KLPAALLDSFRQVELLNLNDLQIEE------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL  138 (597)
T ss_dssp             EECTHHHHHCCCCSEEECTTSCCCE------ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CcCHHHHccCCCCcEEECCCCCCCC------CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence            4556678888999999999888741      22335555 8899999999988888654 3 688999999999998888


Q ss_pred             ccc-cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCC--------
Q 015671          169 WDC-VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSK--------  239 (403)
Q Consensus       169 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--------  239 (403)
                      |.. ++.+++|++|++++|. +. .++ +..+.++++|++|++++|.+.+. +  ++.+++|+.|++++|..        
T Consensus       139 ~~~~~~~l~~L~~L~Ls~N~-l~-~~~-~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~~  212 (597)
T 3oja_B          139 PRGIFHNTPKLTTLSMSNNN-LE-RIE-DDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIA  212 (597)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CC-BCC-TTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCTT
T ss_pred             CHHHhccCCCCCEEEeeCCc-CC-CCC-hhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCch
Confidence            765 5888999999999883 33 222 23577888899999988875443 2  33455555555554322        


Q ss_pred             ----------CCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671          240 ----------LKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL  309 (403)
Q Consensus       240 ----------~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  309 (403)
                                +..++....++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  291 (597)
T 3oja_B          213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  291 (597)
T ss_dssp             CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred             hheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence                      2222333336788888888888764 56788899999999999888888888888999999999997765


Q ss_pred             cccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671          310 QRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       310 ~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                      + +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|...
T Consensus       292 ~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          292 A-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             E-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred             C-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCC
Confidence            5 566667789999999999999988888888899999999988754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=7e-25  Score=219.15  Aligned_cols=90  Identities=12%  Similarity=0.025  Sum_probs=65.6

Q ss_pred             ecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccc-
Q 015671           92 RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQ-  167 (403)
Q Consensus        92 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~-  167 (403)
                      .+.+..|.++++||+|++++|.+.+      ..|..+.. ++|++|++++|.+..++ ..+ .+++|++|++++|.+.. 
T Consensus        70 ~i~~~~~~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  143 (606)
T 3vq2_A           70 TIEDKAWHGLHHLSNLILTGNPIQS------FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC  143 (606)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCC------CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC
T ss_pred             ccCHHHhhchhhcCEeECCCCcccc------cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccce
Confidence            3445667777777777777776642      22455656 78888888888887776 344 68888888888888874 


Q ss_pred             -cccccccCCCCcEeeccccc
Q 015671          168 -LWDCVKHYSKLNQIIHAVCH  187 (403)
Q Consensus       168 -l~~~~~~l~~L~~L~l~~~~  187 (403)
                       +|..++++++|++|++++|.
T Consensus       144 ~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          144 KLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             CCCGGGGTCTTCCEEECCSSC
T ss_pred             echHhHhhcCCCCEEEccCCc
Confidence             67788888888888888773

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1.8e-24  Score=201.11  Aligned_cols=272  Identities=15%  Similarity=0.128  Sum_probs=212.1

Q ss_pred             CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCC
Q 015671           76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEK  154 (403)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~  154 (403)
                      .+++.+.+....+..  +.+  |..+++|++|++++|.+.       .++ .+.. ++|++|++++|.+..++....+++
T Consensus        66 ~~L~~L~l~~n~i~~--~~~--~~~l~~L~~L~L~~n~i~-------~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~  133 (347)
T 4fmz_A           66 TNLEYLNLNGNQITD--ISP--LSNLVKLTNLYIGTNKIT-------DIS-ALQNLTNLRELYLNEDNISDISPLANLTK  133 (347)
T ss_dssp             TTCCEEECCSSCCCC--CGG--GTTCTTCCEEECCSSCCC-------CCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTT
T ss_pred             CCccEEEccCCcccc--chh--hhcCCcCCEEEccCCccc-------Cch-HHcCCCcCCEEECcCCcccCchhhccCCc
Confidence            445555444333322  222  889999999999999874       222 3555 999999999999999987558999


Q ss_pred             ceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEee
Q 015671          155 LVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDL  234 (403)
Q Consensus       155 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  234 (403)
                      |++|++++|.....+..+..+++|++|++++|.     +.....+..+++|++|++++|.+. .++. +..+++|+.|++
T Consensus       134 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l  206 (347)
T 4fmz_A          134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-----VKDVTPIANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTA  206 (347)
T ss_dssp             CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-----CCCCGGGGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEEC
T ss_pred             eeEEECCCCCCcccccchhhCCCCcEEEecCCC-----cCCchhhccCCCCCEEEccCCccc-cccc-ccCCCccceeec
Confidence            999999999665555568999999999999983     333334778899999999998754 4444 778999999999


Q ss_pred             cCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccC
Q 015671          235 SGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLP  313 (403)
Q Consensus       235 ~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  313 (403)
                      ++|..... +.... ++|+.|++++|.++.++. +..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+.+.  
T Consensus       207 ~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--  280 (347)
T 4fmz_A          207 YVNQITDI-TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--  280 (347)
T ss_dssp             CSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--
T ss_pred             ccCCCCCC-chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--
Confidence            99765443 33333 999999999999998876 8899999999999998655 3 4578899999999999877664  


Q ss_pred             cccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchh
Q 015671          314 ECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLG  377 (403)
Q Consensus       314 ~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~  377 (403)
                      +.+..+++|+.|++++|.++ ..+..+..+++|+.|++++|+..+..|     +..+++|+.+..
T Consensus       281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l  340 (347)
T 4fmz_A          281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADF  340 (347)
T ss_dssp             GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESS
T ss_pred             hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-----hhhhhccceeeh
Confidence            45788999999999999998 455678899999999999998665544     456666666433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=1.5e-25  Score=205.19  Aligned_cols=236  Identities=17%  Similarity=0.230  Sum_probs=206.1

Q ss_pred             CCeeEEEecCCCCC---CCCCCC-CCCCceEEEccC-CCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCC
Q 015671          131 AEVKYLHWHGYPLK---SFPSNL-SAEKLVLFEVPE-NDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK  204 (403)
Q Consensus       131 ~~L~~L~l~~~~~~---~lp~~~-~l~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  204 (403)
                      .+++.|+++++.+.   .+|..+ .+++|++|++++ |.+. .+|..+..+++|++|++++|. +.+.+|.  .+.++++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~--~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPD--FLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCG--GGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCH--HHhCCCC
Confidence            57999999999987   478777 799999999995 8887 578899999999999999994 3324553  6788999


Q ss_pred             CcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--C-CCcEEEecCccCc-ccChhhhCCCCCCEEecc
Q 015671          205 VVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--G-NISWLFLTGTAIK-ELPSSIESLLRLEYLDLS  280 (403)
Q Consensus       205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~-~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~  280 (403)
                      |++|++++|.+.+.+|..++.+++|++|++++|...+.+|..+.  . +|++|++++|.++ .+|..+..++ |+.|+++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            99999999998888999999999999999999887667777665  4 9999999999998 7888888887 9999999


Q ss_pred             cCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcC
Q 015671          281 DCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSL  359 (403)
Q Consensus       281 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l  359 (403)
                      +|.+.+..|..+..+++|+.|++++|.+.+.++. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|+..+.+
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            9999888898999999999999999998877765 788999999999999999 89999999999999999999999889


Q ss_pred             CCCeEeccCCCCCCCc
Q 015671          360 PSPLFLARGCLAMQPF  375 (403)
Q Consensus       360 p~~~l~i~~c~~l~~~  375 (403)
                      |..    ..+++|+.+
T Consensus       285 p~~----~~l~~L~~l  296 (313)
T 1ogq_A          285 PQG----GNLQRFDVS  296 (313)
T ss_dssp             CCS----TTGGGSCGG
T ss_pred             CCC----ccccccChH
Confidence            874    445555553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=1.3e-24  Score=217.11  Aligned_cols=252  Identities=17%  Similarity=0.107  Sum_probs=172.2

Q ss_pred             hhcCCCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcccc---ccccc
Q 015671           97 TFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQL---WDCVK  173 (403)
Q Consensus        97 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l---~~~~~  173 (403)
                      .+..+++|+.|++++|.+       ..+| .+..++|++|++++|....-.....+++|++|++++|.+...   +..+.
T Consensus       302 ~l~~~~~L~~L~l~~n~l-------~~lp-~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  373 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQL-------KQFP-TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL  373 (606)
T ss_dssp             CCCTTCCCSEEEEESCCC-------SSCC-CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred             hccccccCCEEEcccccC-------cccc-cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence            344555566666665554       1222 222256666666665322111222566777777777777654   56677


Q ss_pred             cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc--CC
Q 015671          174 HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS--GN  250 (403)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~  250 (403)
                      .+++|++|++++|. +. .++  ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|......|..+.  ++
T Consensus       374 ~~~~L~~L~L~~n~-l~-~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  449 (606)
T 3vq2_A          374 GTNSLRHLDLSFNG-AI-IMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS  449 (606)
T ss_dssp             CCSCCCEEECCSCS-EE-EEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             cCCcccEeECCCCc-cc-cch--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence            77788888887773 33 344  466777888888888877666555 4667788888888888776655555444  78


Q ss_pred             CcEEEecCccCcc--cChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEcc
Q 015671          251 ISWLFLTGTAIKE--LPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLT  328 (403)
Q Consensus       251 L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  328 (403)
                      |+.|++++|.++.  +|..++.+++|+.|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus       450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  529 (606)
T 3vq2_A          450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS  529 (606)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence            8888888887774  56677778888888888887777777777778888888888887777777778888888888888


Q ss_pred             CCCCcccChhhhcCC-CCCEEeccCCcCCCcCC
Q 015671          329 ETNIERIPESIIQHF-VLRYLLLSYSERLQSLP  360 (403)
Q Consensus       329 ~~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~lp  360 (403)
                      +|.++.+|..+..++ +|+.|++++|+....-+
T Consensus       530 ~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          530 FNRIETSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            888887777777776 58888888887654433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=1e-24  Score=225.58  Aligned_cols=153  Identities=12%  Similarity=0.133  Sum_probs=98.5

Q ss_pred             CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCC-CCCC-C
Q 015671           76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSF-PSNL-S  151 (403)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~  151 (403)
                      ..++.+.+....+  ..+.+..|.++++|++|++++|...      ..+ +..+.. ++|++|+|++|.+..+ |..+ .
T Consensus        24 ~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~   95 (844)
T 3j0a_A           24 NTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTP------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG   95 (844)
T ss_dssp             TTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCC------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred             CCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCc------cccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence            4555554443333  3445667888888888888887543      233 455666 8888888888887766 5555 6


Q ss_pred             CCCceEEEccCCCccc-cccc--cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCC--
Q 015671          152 AEKLVLFEVPENDIEQ-LWDC--VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNL--  226 (403)
Q Consensus       152 l~~L~~L~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--  226 (403)
                      +++|++|++++|.+.. ++..  ++.+++|++|++++|. +. .++....++++++|++|++++|.+.+..+..++.+  
T Consensus        96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~-~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~  173 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG  173 (844)
T ss_dssp             CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CC-CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred             CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-cc-ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence            8888888888888775 3433  7788888888888873 22 22222356777888888888877655555444433  


Q ss_pred             CCCCEEeecCCC
Q 015671          227 EFLTKLDLSGCS  238 (403)
Q Consensus       227 ~~L~~L~l~~~~  238 (403)
                      ++|+.|++++|.
T Consensus       174 ~~L~~L~L~~n~  185 (844)
T 3j0a_A          174 KTLSFFSLAANS  185 (844)
T ss_dssp             CSSCCCEECCSB
T ss_pred             CccceEECCCCc
Confidence            445544444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=3.7e-25  Score=218.50  Aligned_cols=270  Identities=16%  Similarity=0.129  Sum_probs=184.8

Q ss_pred             CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-C-CC
Q 015671           76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-L-SA  152 (403)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l  152 (403)
                      ..++.+.+  +......+.+..|..+++||+|++++|.+.      ...+..+.. ++|++|++++|.+..++.. + .+
T Consensus        26 ~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   97 (549)
T 2z81_A           26 AAMKSLDL--SFNKITYIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL   97 (549)
T ss_dssp             TTCCEEEC--CSSCCCEECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred             CCccEEEC--cCCccCccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence            34555444  333333455678899999999999999874      222345666 8999999999999888764 4 78


Q ss_pred             CCceEEEccCCCccc--cccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCC-----
Q 015671          153 EKLVLFEVPENDIEQ--LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFN-----  225 (403)
Q Consensus       153 ~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----  225 (403)
                      ++|++|++++|.+..  .|..++.+++|++|++++|.... .++. ..+.++++|++|++++|.+.+..|..++.     
T Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  175 (549)
T 2z81_A           98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS-EIRR-IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH  175 (549)
T ss_dssp             TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             CCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc-ccCH-hhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence            999999999999885  45778899999999999985444 4442 36778888999999888877666665544     


Q ss_pred             -------------------CCCCCEEeecCCCCCCCC----ccc------------------------------------
Q 015671          226 -------------------LEFLTKLDLSGCSKLKRL----PEI------------------------------------  246 (403)
Q Consensus       226 -------------------l~~L~~L~l~~~~~~~~~----~~~------------------------------------  246 (403)
                                         +++|+.|++++|...+..    +..                                    
T Consensus       176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~  255 (549)
T 2z81_A          176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE  255 (549)
T ss_dssp             EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred             eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence                               456666666665433210    000                                    


Q ss_pred             --------------------------------------------------c--cCCCcEEEecCccCcccChhh-hCCCC
Q 015671          247 --------------------------------------------------S--SGNISWLFLTGTAIKELPSSI-ESLLR  273 (403)
Q Consensus       247 --------------------------------------------------~--~~~L~~L~l~~~~~~~l~~~~-~~l~~  273 (403)
                                                                        .  ..+++.|++++|.++.+|..+ ..+++
T Consensus       256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~  335 (549)
T 2z81_A          256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS  335 (549)
T ss_dssp             EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred             cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence                                                              0  024555666666666666555 46788


Q ss_pred             CCEEecccCcCCCcCCc---cccCCCCCcEEeecCCCCCcccC--cccCCCCCCCEEEccCCCCcccChhhhcCCCCCEE
Q 015671          274 LEYLDLSDCKRLKSLPS---SLCKLKSLGVLNLYGCSNLQRLP--ECLGQLSSPITLGLTETNIERIPESIIQHFVLRYL  348 (403)
Q Consensus       274 L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L  348 (403)
                      |+.|++++|.+.+.+|.   .++.+++|+.|++++|.+.+..+  ..+..+++|+.|++++|.++.+|..+..+++|++|
T Consensus       336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L  415 (549)
T 2z81_A          336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL  415 (549)
T ss_dssp             CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEE
T ss_pred             ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEE
Confidence            88888888877665532   35667777888887776654322  34667777777777777777777766677777777


Q ss_pred             eccCCcC
Q 015671          349 LLSYSER  355 (403)
Q Consensus       349 ~l~~c~~  355 (403)
                      ++++|..
T Consensus       416 ~Ls~N~l  422 (549)
T 2z81_A          416 NLSSTGI  422 (549)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCCc
Confidence            7777653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=6.5e-24  Score=196.00  Aligned_cols=237  Identities=17%  Similarity=0.182  Sum_probs=136.9

Q ss_pred             CCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCcccc-ccccccCCCCc
Q 015671          103 KLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQL-WDCVKHYSKLN  179 (403)
Q Consensus       103 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~  179 (403)
                      ++++++++++.+.       .+|..+. +.|++|++++|.++.++. .+ .+++|++|++++|.+..+ |..+..+++|+
T Consensus        32 ~l~~l~~~~~~l~-------~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (330)
T 1xku_A           32 HLRVVQCSDLGLE-------KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE  103 (330)
T ss_dssp             ETTEEECTTSCCC-------SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCeEEEecCCCcc-------ccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence            5566666655442       2332221 556666666666666654 23 566666666666666655 45666666666


Q ss_pred             EeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCC--CCccccc--CCCcEEE
Q 015671          180 QIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLK--RLPEISS--GNISWLF  255 (403)
Q Consensus       180 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~--~~L~~L~  255 (403)
                      +|++++| .+. .+|.  .+.  ++|++|++++|.+....+..+..+++|+.|++++|....  ..+..+.  ++|++|+
T Consensus       104 ~L~Ls~n-~l~-~l~~--~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          104 RLYLSKN-QLK-ELPE--KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             EEECCSS-CCS-BCCS--SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             EEECCCC-cCC-ccCh--hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence            6666666 233 3332  111  556666666665444444445566666666666654321  2222222  6666666


Q ss_pred             ecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc
Q 015671          256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI  335 (403)
Q Consensus       256 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l  335 (403)
                      +++|.++.+|..+.  ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+
T Consensus       178 l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  255 (330)
T 1xku_A          178 IADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV  255 (330)
T ss_dssp             CCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred             CCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC
Confidence            66666666654432  5666666666665555555666666666666666665555555566666666666666666666


Q ss_pred             ChhhhcCCCCCEEeccCCcC
Q 015671          336 PESIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       336 ~~~~~~~~~L~~L~l~~c~~  355 (403)
                      |..+..+++|++|++++|+.
T Consensus       256 p~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCC
T ss_pred             ChhhccCCCcCEEECCCCcC
Confidence            66666666666666666643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=2.3e-24  Score=213.82  Aligned_cols=87  Identities=15%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             cChhhhcCCCCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCccc-
Q 015671           93 LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQ-  167 (403)
Q Consensus        93 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~-  167 (403)
                      +.+..|.++++||+|++++|.+.       .. +..+.. ++|++|++++|.++.++. .+ .+++|++|++++|.+.. 
T Consensus        67 i~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~  139 (570)
T 2z63_A           67 IEDGAYQSLSHLSTLILTGNPIQ-------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF  139 (570)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCC-------EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC
T ss_pred             cCcccccCchhCCEEeCcCCcCC-------ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee
Confidence            44556667777777777776653       22 234444 777777777777776664 23 67777777777777764 


Q ss_pred             -cccccccCCCCcEeecccc
Q 015671          168 -LWDCVKHYSKLNQIIHAVC  186 (403)
Q Consensus       168 -l~~~~~~l~~L~~L~l~~~  186 (403)
                       +|..++++++|++|++++|
T Consensus       140 ~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A          140 KLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             CCCGGGGGCTTCCEEECTTS
T ss_pred             cChhhhcccCCCCEEeCcCC
Confidence             5667777777777777766

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=1e-24  Score=213.98  Aligned_cols=245  Identities=14%  Similarity=0.087  Sum_probs=163.1

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCCccccccccccCCCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKL  178 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L  178 (403)
                      ++|++|++++|.+.+..      +..+.. ++|++|++++|.++.+ |..+ .+++|++|++++|.++.+|..  .+++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQNYISELW------TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL   92 (520)
T ss_dssp             TTCSEEECCSSCCCCCC------HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred             ccccEEECCCCcccccC------hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence            89999999999885321      234455 8999999999999888 5555 799999999999999999877  89999


Q ss_pred             cEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCC--CEEeecCCCC--CCCCcccc-------
Q 015671          179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFL--TKLDLSGCSK--LKRLPEIS-------  247 (403)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~-------  247 (403)
                      ++|++++|. +. .++.+..++++++|++|++++|.+.+   ..+..+++|  +.|++++|..  ....|...       
T Consensus        93 ~~L~L~~N~-l~-~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~  167 (520)
T 2z7x_B           93 KHLDLSFNA-FD-ALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES  167 (520)
T ss_dssp             SEEECCSSC-CS-SCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred             cEEeccCCc-cc-cccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccce
Confidence            999999993 33 33333467888888888888877543   123344444  5555554433  11111000       


Q ss_pred             ------------------------------------------------------------------------------cC
Q 015671          248 ------------------------------------------------------------------------------SG  249 (403)
Q Consensus       248 ------------------------------------------------------------------------------~~  249 (403)
                                                                                                    .+
T Consensus       168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  247 (520)
T 2z7x_B          168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT  247 (520)
T ss_dssp             EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred             EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence                                                                                          01


Q ss_pred             CCcEEEecCccCc-ccChhh-----------------------------------------------------hCCCCCC
Q 015671          250 NISWLFLTGTAIK-ELPSSI-----------------------------------------------------ESLLRLE  275 (403)
Q Consensus       250 ~L~~L~l~~~~~~-~l~~~~-----------------------------------------------------~~l~~L~  275 (403)
                      +|++|++++|.++ .+|..+                                                     ..+++|+
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~  327 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL  327 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred             cccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCccc
Confidence            4445555544444 333222                                                     4566777


Q ss_pred             EEecccCcCCCcCCccccCCCCCcEEeecCCCCCc--ccCcccCCCCCCCEEEccCCCCcc-cChh-hhcCCCCCEEecc
Q 015671          276 YLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQ--RLPECLGQLSSPITLGLTETNIER-IPES-IIQHFVLRYLLLS  351 (403)
Q Consensus       276 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~-l~~~-~~~~~~L~~L~l~  351 (403)
                      +|++++|.+.+.+|..++.+++|+.|++++|.+.+  .+|..+..+++|+.|++++|.++. +|.. +..+++|+.|+++
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            77777777766667777777777777777777665  455666777777777777777774 6653 4555666666666


Q ss_pred             CCcCCCcC
Q 015671          352 YSERLQSL  359 (403)
Q Consensus       352 ~c~~l~~l  359 (403)
                      +|...+.+
T Consensus       408 ~N~l~~~~  415 (520)
T 2z7x_B          408 SNILTDTI  415 (520)
T ss_dssp             SSCCCGGG
T ss_pred             CCCCCcch
Confidence            66554433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=1.1e-23  Score=202.68  Aligned_cols=248  Identities=17%  Similarity=0.104  Sum_probs=181.5

Q ss_pred             hhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccC
Q 015671           97 TFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHY  175 (403)
Q Consensus        97 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l  175 (403)
                      .|..+++|++|++++|.+.+       ++  +.. ++|++|++++|.++.+| ...+++|++|++++|.++.++  ++.+
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~-------~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l  126 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITT-------LD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQN  126 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSC-------CC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTC
T ss_pred             hhcccCCCCEEEccCCcCCe-------Ec--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCC
Confidence            57888999999999988753       22  455 88999999999988876 337889999999999888875  7888


Q ss_pred             CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEE
Q 015671          176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF  255 (403)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  255 (403)
                      ++|++|++++| .+.    .+ .++++++|++|++++|...+.+  .++.+++|+.|++++|.. +.+|....++|+.|+
T Consensus       127 ~~L~~L~l~~N-~l~----~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~l~~l~~L~~L~  197 (457)
T 3bz5_A          127 PLLTYLNCARN-TLT----EI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TELDVSQNKLLNRLN  197 (457)
T ss_dssp             TTCCEEECTTS-CCS----CC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCCCTTCTTCCEEE
T ss_pred             CcCCEEECCCC-ccc----ee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-ceeccccCCCCCEEE
Confidence            99999999988 233    22 3677888899999888666666  367888899999988654 345522228888888


Q ss_pred             ecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc--
Q 015671          256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE--  333 (403)
Q Consensus       256 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~--  333 (403)
                      +++|.++.++  ++.+++|+.|++++|.+.+ +|  ++.+++|+.|++++|.+.+..   +..+++|+.|+++++.++  
T Consensus       198 l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L  269 (457)
T 3bz5_A          198 CDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEI  269 (457)
T ss_dssp             CCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCC
T ss_pred             CcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEE
Confidence            8888888763  7778888888888888666 55  677888888888888776643   334555555555544443  


Q ss_pred             ---------ccChhhhcCCCCCEEeccCCcCCCcCCCC-----eEeccCCCCCCCc
Q 015671          334 ---------RIPESIIQHFVLRYLLLSYSERLQSLPSP-----LFLARGCLAMQPF  375 (403)
Q Consensus       334 ---------~l~~~~~~~~~L~~L~l~~c~~l~~lp~~-----~l~i~~c~~l~~~  375 (403)
                               .+|  .+.+++|+.|++++|+.++.+|..     .+++.+|++|+.+
T Consensus       270 ~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L  323 (457)
T 3bz5_A          270 DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL  323 (457)
T ss_dssp             CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred             ECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence                     233  356688888888888877777752     4556666666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=1.4e-23  Score=193.98  Aligned_cols=239  Identities=15%  Similarity=0.185  Sum_probs=184.0

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCcccc-ccccccCCCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQL-WDCVKHYSKL  178 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l-~~~~~~l~~L  178 (403)
                      .+++.++++++.+.       .+|..+. ++|++|++++|.+..++. .+ .+++|++|++++|.+..+ |..+..+++|
T Consensus        33 c~l~~l~~~~~~l~-------~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-------AVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             EETTEEECCSSCCS-------SCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             ccCCEEECCCCCcc-------ccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            36888888887652       4444332 688899999988887754 44 788899999999988876 6678889999


Q ss_pred             cEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCC--CCccccc-CCCcEEE
Q 015671          179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLK--RLPEISS-GNISWLF  255 (403)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~-~~L~~L~  255 (403)
                      ++|++++| .+. .+|.  .+.  ++|++|++++|.+....+..+..+++|+.|++++|....  ..+..+. .+|+.|+
T Consensus       105 ~~L~L~~n-~l~-~l~~--~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~  178 (332)
T 2ft3_A          105 QKLYISKN-HLV-EIPP--NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR  178 (332)
T ss_dssp             CEEECCSS-CCC-SCCS--SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred             CEEECCCC-cCC-ccCc--ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence            99999888 344 4443  222  788999999887665444557888999999998876532  2233322 5888888


Q ss_pred             ecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc
Q 015671          256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI  335 (403)
Q Consensus       256 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l  335 (403)
                      +++|.++.+|..+.  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.++..+++|+.|++++|.++.+
T Consensus       179 l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  256 (332)
T 2ft3_A          179 ISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV  256 (332)
T ss_dssp             CCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC
T ss_pred             CcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec
Confidence            98888888886554  7888999998887777767788888999999998888777777788888999999999998888


Q ss_pred             ChhhhcCCCCCEEeccCCcCC
Q 015671          336 PESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       336 ~~~~~~~~~L~~L~l~~c~~l  356 (403)
                      |..+..+++|+.|++++|+..
T Consensus       257 p~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          257 PAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CTTGGGCTTCCEEECCSSCCC
T ss_pred             ChhhhcCccCCEEECCCCCCC
Confidence            888888899999999988654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=2e-23  Score=192.66  Aligned_cols=241  Identities=16%  Similarity=0.168  Sum_probs=194.3

Q ss_pred             CCCcEEEEeccCCCCCCcccccccC-CCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCCccccccccccCCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQ-DPGF-AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVPENDIEQLWDCVKHYSK  177 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~  177 (403)
                      ++|++|++++|.+.       .++. .+.. ++|++|++++|.+..+ |..+ .+++|++|++++|.+..+|..+.  ++
T Consensus        52 ~~l~~L~L~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~  122 (330)
T 1xku_A           52 PDTALLDLQNNKIT-------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT  122 (330)
T ss_dssp             TTCCEEECCSSCCC-------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred             CCCeEEECCCCcCC-------EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence            68999999999874       3333 4555 8999999999999887 6666 78999999999999998887654  79


Q ss_pred             CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCC--ccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEE
Q 015671          178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLK--SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF  255 (403)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  255 (403)
                      |++|++++|. +. .++ ...+.++++|+.|++++|.+..  ..+..+..+++|+.|++++|. +..+|....++|++|+
T Consensus       123 L~~L~l~~n~-l~-~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~  198 (330)
T 1xku_A          123 LQELRVHENE-IT-KVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELH  198 (330)
T ss_dssp             CCEEECCSSC-CC-BBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEE
T ss_pred             ccEEECCCCc-cc-ccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEE
Confidence            9999999983 33 222 1246788999999999987643  456678889999999999865 4456665568999999


Q ss_pred             ecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671          256 LTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER  334 (403)
Q Consensus       256 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~  334 (403)
                      +++|.++.+ |..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|.++..+++|+.|++++|.++.
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence            999999876 467889999999999999987777767888999999999998765 778888999999999999999997


Q ss_pred             cChhh-------hcCCCCCEEeccCCcCC
Q 015671          335 IPESI-------IQHFVLRYLLLSYSERL  356 (403)
Q Consensus       335 l~~~~-------~~~~~L~~L~l~~c~~l  356 (403)
                      ++...       ...+.|+.|++++|+..
T Consensus       278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cChhhcCCcccccccccccceEeecCccc
Confidence            76432       13478999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=8.4e-24  Score=204.50  Aligned_cols=241  Identities=19%  Similarity=0.199  Sum_probs=139.2

Q ss_pred             hcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCC
Q 015671           98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYS  176 (403)
Q Consensus        98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  176 (403)
                      +..+++|++|++++|.+.+       ++. +.. ++|++|++++|.+..++....+++|++|++++|.+..++. +..++
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~  134 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTD-------ITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT  134 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             hhhhcCCCEEECCCCccCC-------chh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence            5566777777777766532       222 333 6667777766666666552256666677776666666544 56666


Q ss_pred             CCcEeecccccCccccCCC------------------CCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCC
Q 015671          177 KLNQIIHAVCHRLIAKTPN------------------PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCS  238 (403)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  238 (403)
                      +|++|++++|. +. .++.                  ...+.++++|++|++++|.+.. ++ .+..+++|+.|++++|.
T Consensus       135 ~L~~L~l~~n~-l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~  210 (466)
T 1o6v_A          135 NLNRLELSSNT-IS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQ  210 (466)
T ss_dssp             TCSEEEEEEEE-EC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSC
T ss_pred             CCCEEECCCCc-cC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCc
Confidence            66666666652 22 1211                  1124455666666666665332 22 25566667777776655


Q ss_pred             CCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCC
Q 015671          239 KLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQ  318 (403)
Q Consensus       239 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  318 (403)
                      .....+....++|+.|++++|.++.++ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..
T Consensus       211 l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~  285 (466)
T 1o6v_A          211 ISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG  285 (466)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             ccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence            443333111266677777666666553 45566667777777666544332  5566666666666665554332  556


Q ss_pred             CCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCC
Q 015671          319 LSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ  357 (403)
Q Consensus       319 l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  357 (403)
                      +++|+.|++++|.++.++. +..+++|+.|++++|...+
T Consensus       286 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          286 LTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC
T ss_pred             CCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC
Confidence            6666666666666665543 5566666666666665443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=3.4e-24  Score=212.51  Aligned_cols=129  Identities=16%  Similarity=0.191  Sum_probs=97.6

Q ss_pred             CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCCC-CCC-C
Q 015671           76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSFP-SNL-S  151 (403)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~lp-~~~-~  151 (403)
                      ..++.+.  ++......+.+..|.++++|++|++++|.+.       .+ +..+.. ++|++|++++|.+..+| ..+ .
T Consensus        28 ~~l~~L~--Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (570)
T 2z63_A           28 FSTKNLD--LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (570)
T ss_dssp             SSCCEEE--CCSCCCCEECTTTTTTCSSCCEEECTTCCCC-------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             ccccEEE--ccCCccCccChhHhhCCCCceEEECCCCcCC-------ccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence            3455544  4444444556778999999999999999874       33 345566 99999999999998886 445 7


Q ss_pred             CCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCC
Q 015671          152 AEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKS  215 (403)
Q Consensus       152 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  215 (403)
                      +++|++|++++|.+..++. .++.+++|++|++++|. +. .++.+..++++++|++|++++|.+
T Consensus        99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~-~~~lp~~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQ-SFKLPEYFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CC-CCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             ccccccccccccccccCCCccccccccccEEecCCCc-cc-eecChhhhcccCCCCEEeCcCCcc
Confidence            9999999999999998875 68999999999999983 32 222234567777778887777653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=6.3e-24  Score=210.25  Aligned_cols=125  Identities=18%  Similarity=0.244  Sum_probs=96.7

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCCccccccccccCCCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKL  178 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L  178 (403)
                      ++|++|++++|.+.+.      .+..+.. ++|++|++++|.++.+ |..+ .+++|++|++++|.++.+|..  .+++|
T Consensus        52 ~~L~~L~Ls~N~i~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L  123 (562)
T 3a79_B           52 PRTKALSLSQNSISEL------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL  123 (562)
T ss_dssp             TTCCEEECCSSCCCCC------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred             CCcCEEECCCCCcccc------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence            8999999999988521      2245566 9999999999999988 4555 799999999999999999877  89999


Q ss_pred             cEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCC--CEEeecCCCC
Q 015671          179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFL--TKLDLSGCSK  239 (403)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~  239 (403)
                      ++|++++|. +. .++.+..++++++|++|++++|.+...   .+..+++|  +.|++++|..
T Consensus       124 ~~L~Ls~N~-l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          124 RHLDLSFND-FD-VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             SEEECCSSC-CS-BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             CEEECCCCC-cc-ccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            999999993 44 444345788899999999999876542   23344444  6666666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=6e-24  Score=194.06  Aligned_cols=202  Identities=18%  Similarity=0.209  Sum_probs=108.8

Q ss_pred             CCeeEEEecCCCCCCC---CCCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCc
Q 015671          131 AEVKYLHWHGYPLKSF---PSNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVV  206 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~l---p~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~  206 (403)
                      ++|++|++++|.+..+   |..+ .+++|++|++++|.+..+|..+..+++|++|++++| .+. .++....+.++++|+
T Consensus        52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~-~~~~~~~~~~l~~L~  129 (306)
T 2z66_A           52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLK-QMSEFSVFLSLRNLI  129 (306)
T ss_dssp             TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEE-SSTTTTTTTTCTTCC
T ss_pred             ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC-ccc-ccccchhhhhccCCC
Confidence            5555555555554433   1111 345555555555555555555555555555555554 222 222223444555555


Q ss_pred             EEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcc--cChhhhCCCCCCEEecccCcC
Q 015671          207 ILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKE--LPSSIESLLRLEYLDLSDCKR  284 (403)
Q Consensus       207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~  284 (403)
                      +|++++|.+....+..+..+++|++|++++                      |.++.  +|..+..+++|+.|++++|.+
T Consensus       130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAG----------------------NSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             EEECTTSCCEECSTTTTTTCTTCCEEECTT----------------------CEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCccchhhcccCcCCCEEECCC----------------------CccccccchhHHhhCcCCCEEECCCCCc
Confidence            555555544434444444455555555554                      44442  455556666666666666665


Q ss_pred             CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCC-CCCEEeccCCcCC
Q 015671          285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHF-VLRYLLLSYSERL  356 (403)
Q Consensus       285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~-~L~~L~l~~c~~l  356 (403)
                      .+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ ..|..+..++ +|+.|++++|+..
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            5555555666666666666666655554445666666666666666666 3344455553 6666666666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=2e-23  Score=192.94  Aligned_cols=240  Identities=17%  Similarity=0.144  Sum_probs=183.0

Q ss_pred             CCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCceEEEccCCCccccccccccCCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSF-PSNL-SAEKLVLFEVPENDIEQLWDCVKHYSK  177 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~l-p~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~  177 (403)
                      ++|++|++++|.+.       .+ +..+.. ++|++|++++|.++.+ |..+ .+++|++|++++|.+..+|..+.  ++
T Consensus        54 ~~l~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~  124 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS-------ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SS  124 (332)
T ss_dssp             TTCCEEECCSSCCC-------EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TT
T ss_pred             CCCeEEECCCCcCC-------ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--cc
Confidence            68889999888764       33 345555 8899999998888877 4445 68889999999998888876654  78


Q ss_pred             CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCC--ccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEE
Q 015671          178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLK--SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF  255 (403)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  255 (403)
                      |++|++++|. +. .++ ...+.++++|++|++++|.+..  ..+..+..+ +|+.|++++|. +..+|....++|++|+
T Consensus       125 L~~L~l~~n~-i~-~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~  199 (332)
T 2ft3_A          125 LVELRIHDNR-IR-KVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELH  199 (332)
T ss_dssp             CCEEECCSSC-CC-CCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCB
T ss_pred             CCEEECCCCc-cC-ccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEE
Confidence            9999998883 33 333 1246778888999998887642  455666666 88899998865 4446665558889999


Q ss_pred             ecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671          256 LTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER  334 (403)
Q Consensus       256 l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~  334 (403)
                      +++|.++.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|.++..+++|+.|++++|.++.
T Consensus       200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence            9998888766 56788889999999998877766667888899999999987765 677778888999999999999886


Q ss_pred             cChh-hhc------CCCCCEEeccCCcCC
Q 015671          335 IPES-IIQ------HFVLRYLLLSYSERL  356 (403)
Q Consensus       335 l~~~-~~~------~~~L~~L~l~~c~~l  356 (403)
                      ++.. +..      .+.|+.|++++|+..
T Consensus       279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          279 VGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cChhHccccccccccccccceEeecCccc
Confidence            6542 221      467889999998765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=2.9e-24  Score=202.97  Aligned_cols=246  Identities=13%  Similarity=0.068  Sum_probs=195.8

Q ss_pred             CCCCCcEEEEeccCCCCCCcccccccCCC-CC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCccccc-ccccc
Q 015671          100 KMPKLRFLKFYSSSFNGENKCKMSYLQDP-GF-AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLW-DCVKH  174 (403)
Q Consensus       100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l-~~-~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~-~~~~~  174 (403)
                      .++++|+|+++++.+       ..+|..+ .. ++|++|+++++.+..++. .+ .+++|++|++++|.+..++ ..++.
T Consensus        43 ~l~~l~~l~l~~~~l-------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  115 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTM-------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  115 (390)
T ss_dssp             GGCCCSEEEEESCEE-------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCCceEEEecCCch-------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence            468999999999876       3555543 33 899999999999998865 44 7999999999999999875 56899


Q ss_pred             CCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCC----
Q 015671          175 YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGN----  250 (403)
Q Consensus       175 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----  250 (403)
                      +++|++|++++| .+. .+|. ..+.++++|++|++++|.+....+..++.+++|+.|++++|.... .+....++    
T Consensus       116 l~~L~~L~L~~n-~l~-~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L  191 (390)
T 3o6n_A          116 VPLLTVLVLERN-DLS-SLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHA  191 (390)
T ss_dssp             CTTCCEEECCSS-CCC-CCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEE
T ss_pred             CCCCCEEECCCC-ccC-cCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-ccccccccccee
Confidence            999999999998 344 4442 346889999999999998777667778999999999999976433 22222244    


Q ss_pred             ---------------CcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcc
Q 015671          251 ---------------ISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC  315 (403)
Q Consensus       251 ---------------L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  315 (403)
                                     ++.|++++|.++.+|.  ...++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|..
T Consensus       192 ~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          192 NVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             ECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence                           5555555555554443  2346889999998886653  46788999999999999988888889


Q ss_pred             cCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          316 LGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       316 l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      +..+++|+.|++++|.++.+|.....+++|+.|++++|+.. .+|.
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~  312 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVER  312 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred             ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCc
Confidence            99999999999999999998888888999999999999654 5654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=2.5e-23  Score=200.07  Aligned_cols=248  Identities=14%  Similarity=0.071  Sum_probs=200.2

Q ss_pred             hhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccC
Q 015671           97 TFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHY  175 (403)
Q Consensus        97 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l  175 (403)
                      .+.++++|++|++++|.+.+       ++ .+.. ++|++|++++|.++.+| ...+++|++|++++|.++.++  ++.+
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~-------~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l  105 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD-------MT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPL  105 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC-------CT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred             ChhHcCCCCEEEccCCCccc-------Ch-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCC
Confidence            46778999999999998853       23 4555 99999999999999987 337999999999999999885  8899


Q ss_pred             CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEE
Q 015671          176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF  255 (403)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  255 (403)
                      ++|++|++++| .+. .+    .++++++|++|++++|.+.+ ++  ++.+++|+.|++++|..++.++....++|+.|+
T Consensus       106 ~~L~~L~L~~N-~l~-~l----~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  176 (457)
T 3bz5_A          106 TKLTYLNCDTN-KLT-KL----DVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD  176 (457)
T ss_dssp             TTCCEEECCSS-CCS-CC----CCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred             CcCCEEECCCC-cCC-ee----cCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence            99999999999 333 23    27889999999999998665 43  789999999999999777777433339999999


Q ss_pred             ecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc
Q 015671          256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI  335 (403)
Q Consensus       256 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l  335 (403)
                      +++|.++.+|  +..+++|+.|++++|.+.+.   .++.+++|+.|++++|.+.+ +|  +..+++|+.|++++|.++.+
T Consensus       177 ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          177 CSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             CCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             CCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence            9999999987  78899999999999987664   37889999999999998877 55  78999999999999999977


Q ss_pred             ChhhhcCCC----------CCEEeccCCcCCCcCCCC------eEeccCCCCCCC
Q 015671          336 PESIIQHFV----------LRYLLLSYSERLQSLPSP------LFLARGCLAMQP  374 (403)
Q Consensus       336 ~~~~~~~~~----------L~~L~l~~c~~l~~lp~~------~l~i~~c~~l~~  374 (403)
                      |  ++.+++          |+.|++++|..++.+|..      .+++.+|+.+..
T Consensus       249 ~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~  301 (457)
T 3bz5_A          249 D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYL  301 (457)
T ss_dssp             C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCE
T ss_pred             C--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccce
Confidence            6  344554          456666667666666531      455555554444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=3.6e-23  Score=198.64  Aligned_cols=221  Identities=20%  Similarity=0.255  Sum_probs=157.5

Q ss_pred             CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          131 AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      .+++.|++++|.+..++ ..+ .+++|++|++++|.+..++ ..+..+++|++|++++| .+. .++. ..+..+++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~-~~~~-~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLT-TIPN-GAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCS-SCCT-TTSCSCSSCCE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCC-eeCH-hHhhccccCce
Confidence            66777777777777664 333 6777778888777777664 56777777888888777 333 3331 34667777788


Q ss_pred             EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecCccCcccChhhhCCCCCCEEecccCcC
Q 015671          208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR  284 (403)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~  284 (403)
                      |++++|.+....+..+..+++|+.|++++|..++.++....   ++|++|++++|.++.+|. +..+++|+.|++++|.+
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCcc
Confidence            88877775544444667777788888877766666655322   777788888777777763 66777888888888877


Q ss_pred             CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcC
Q 015671          285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~  355 (403)
                      .+..|..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.++.++. .+..+++|+.|++++|+.
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            76667777778888888888877777777777778888888888888876654 346677888888887763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=4.2e-23  Score=198.85  Aligned_cols=220  Identities=22%  Similarity=0.229  Sum_probs=147.5

Q ss_pred             CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          131 AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      +++++|++++|.+..++ ..+ .+++|++|++++|.+..++ ..+..+++|++|++++| .+. .++ ...+.++++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~-~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLT-VIP-SGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCS-BCC-TTTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCC-ccC-hhhhcccCCCCE
Confidence            56777777777766653 333 5677777777777776654 46666777777777776 233 333 134566677777


Q ss_pred             EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecCccCcccChhhhCCCCCCEEecccCcC
Q 015671          208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR  284 (403)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~  284 (403)
                      |++++|.+....+..+..+++|+.|++++|..++.++....   ++|++|++++|.++.+| .+..+++|+.|++++|.+
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence            77777665433334566677777777777666666554322   67777777777777665 366677777777777777


Q ss_pred             CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCc
Q 015671          285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSE  354 (403)
Q Consensus       285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~  354 (403)
                      .+..|..+.++++|+.|++++|.+.+..+..+.++++|+.|++++|.++.+|. .+..+++|+.|++++|+
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            66666677777777777777777776666777777777777777777776554 34667777777777775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=4.5e-23  Score=213.36  Aligned_cols=283  Identities=14%  Similarity=0.067  Sum_probs=199.3

Q ss_pred             CCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCC-CCCC-CCCC-CCCCceEEEccCCCcccc-cccccc
Q 015671          100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYP-LKSF-PSNL-SAEKLVLFEVPENDIEQL-WDCVKH  174 (403)
Q Consensus       100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~-~~~l-p~~~-~l~~L~~L~l~~~~~~~l-~~~~~~  174 (403)
                      -.++|++|++++|.+.      ...+..+.. ++|++|++++|. ...+ |..+ ++++|++|++++|.+..+ |..++.
T Consensus        22 lp~~l~~LdLs~N~i~------~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~   95 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIR------TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG   95 (844)
T ss_dssp             SCTTCCEEEEESCCCC------EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred             CCCCcCEEECCCCcCC------ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence            3578999999999875      233556666 999999999995 5566 5556 799999999999999986 789999


Q ss_pred             CCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc----C
Q 015671          175 YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS----G  249 (403)
Q Consensus       175 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~  249 (403)
                      +++|++|++++|. +.+.++....+.++++|++|++++|.+.+..+ ..++.+++|++|++++|......+....    +
T Consensus        96 l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~  174 (844)
T 3j0a_A           96 LFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK  174 (844)
T ss_dssp             CSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred             CcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence            9999999999993 43244544458899999999999998776544 5689999999999999876554433221    3


Q ss_pred             C------------------------------CcEEEecCccCc-ccChhhh-----------------------------
Q 015671          250 N------------------------------ISWLFLTGTAIK-ELPSSIE-----------------------------  269 (403)
Q Consensus       250 ~------------------------------L~~L~l~~~~~~-~l~~~~~-----------------------------  269 (403)
                      +                              |+.|++++|.++ ..+..+.                             
T Consensus       175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~  254 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD  254 (844)
T ss_dssp             SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred             ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence            3                              555666555433 1111110                             


Q ss_pred             -------C--CCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc-Chhh
Q 015671          270 -------S--LLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI-PESI  339 (403)
Q Consensus       270 -------~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~  339 (403)
                             .  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.++.+ |..+
T Consensus       255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  334 (844)
T 3j0a_A          255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF  334 (844)
T ss_dssp             GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred             CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence                   0  25677777777776666666677778888888888777777777777788888888888887744 5567


Q ss_pred             hcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhccccccCCCcchh
Q 015671          340 IQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHTHRIPHIDHML  392 (403)
Q Consensus       340 ~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~~~~~~~~~~~~~  392 (403)
                      ..+++|+.|++++|.. +.+|..  .+.++++|+.+....+.+..+..++.+.
T Consensus       335 ~~l~~L~~L~L~~N~i-~~~~~~--~~~~l~~L~~L~Ls~N~l~~i~~~~~L~  384 (844)
T 3j0a_A          335 YGLPKVAYIDLQKNHI-AIIQDQ--TFKFLEKLQTLDLRDNALTTIHFIPSIP  384 (844)
T ss_dssp             SSCTTCCEEECCSCCC-CCCCSS--CSCSCCCCCEEEEETCCSCCCSSCCSCS
T ss_pred             cCCCCCCEEECCCCCC-CccChh--hhcCCCCCCEEECCCCCCCcccCCCCcc
Confidence            7778888888887754 344432  1355666666554444444443333333

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=2.4e-24  Score=196.76  Aligned_cols=227  Identities=22%  Similarity=0.237  Sum_probs=175.1

Q ss_pred             CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-CCC
Q 015671           76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SAE  153 (403)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l~  153 (403)
                      ..++.+.+....+  ..+....|.++++|++|++++|.+...    ...+..+.. ++|++|++++|.+..+|..+ .++
T Consensus        28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~  101 (306)
T 2z66_A           28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFK----GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE  101 (306)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEE----EEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCT
T ss_pred             CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcc----cCcccccccccccCEEECCCCccccChhhcCCCC
Confidence            3555555444333  355566789999999999999987411    111222333 89999999999998888766 799


Q ss_pred             CceEEEccCCCcccccc--ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCC-ccCccCCCCCCCC
Q 015671          154 KLVLFEVPENDIEQLWD--CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLK-SLPSEIFNLEFLT  230 (403)
Q Consensus       154 ~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~  230 (403)
                      +|++|++++|.+..++.  .+..+++|++|++++|. +.+..  ...+.++++|++|++++|.+.+ ..|..+..+++|+
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECS--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccc--hhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence            99999999999998864  78999999999999984 33123  2467889999999999998765 5778888899999


Q ss_pred             EEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671          231 KLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL  309 (403)
Q Consensus       231 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  309 (403)
                      .|++++|.                      ++.+ |..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       179 ~L~Ls~n~----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          179 FLDLSQCQ----------------------LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             EEECTTSC----------------------CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             EEECCCCC----------------------cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence            99998854                      3333 445677888888888888876666656778888999999988888


Q ss_pred             cccCcccCCCC-CCCEEEccCCCCc
Q 015671          310 QRLPECLGQLS-SPITLGLTETNIE  333 (403)
Q Consensus       310 ~~~~~~l~~l~-~L~~L~l~~~~l~  333 (403)
                      +..+..+..++ +|+.|++++|.++
T Consensus       237 ~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          237 TSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             BCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             ccCHHHHHhhhccCCEEEccCCCee
Confidence            88887888774 8999999998886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=8.8e-24  Score=210.51  Aligned_cols=246  Identities=13%  Similarity=0.066  Sum_probs=197.0

Q ss_pred             CCCCCcEEEEeccCCCCCCcccccccCCCCC--CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCcccccc-cccc
Q 015671          100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLWD-CVKH  174 (403)
Q Consensus       100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~~-~~~~  174 (403)
                      .+.+++.|+++++.+.       .+|..+..  ++|++|++++|.+..++. .+ .+++|++|++++|.+..++. .++.
T Consensus        49 ~l~~l~~l~l~~~~l~-------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  121 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  121 (597)
T ss_dssp             GGCCCSEEEESSCEES-------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cCCCceEEEeeCCCCC-------CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence            4689999999998763       45554332  899999999999998864 45 79999999999999998865 5799


Q ss_pred             CCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcE-
Q 015671          175 YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISW-  253 (403)
Q Consensus       175 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~-  253 (403)
                      +++|++|++++| .+. .+|. ..++++++|++|++++|.+.+..|..++.+++|+.|++++|.... .+....++|+. 
T Consensus       122 l~~L~~L~L~~n-~l~-~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L  197 (597)
T 3oja_B          122 VPLLTVLVLERN-DLS-SLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHA  197 (597)
T ss_dssp             CTTCCEEECCSS-CCC-CCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEE
T ss_pred             CCCCCEEEeeCC-CCC-CCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhh
Confidence            999999999999 444 4442 346889999999999999877777789999999999999976433 33222244444 


Q ss_pred             ------------------EEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcc
Q 015671          254 ------------------LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPEC  315 (403)
Q Consensus       254 ------------------L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  315 (403)
                                        |++++|.++.++..+  .++|+.|++++|.+.+  +..+..+++|+.|++++|.+.+..|..
T Consensus       198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             ECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             hcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence                              555555544444322  3678899999888665  356888999999999999999998999


Q ss_pred             cCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          316 LGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       316 l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      +..+++|+.|++++|.++.+|.....+++|+.|++++|... .+|.
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~  318 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVER  318 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred             hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCc
Confidence            99999999999999999999988888999999999999765 5665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=2.2e-23  Score=201.55  Aligned_cols=236  Identities=17%  Similarity=0.218  Sum_probs=173.1

Q ss_pred             CCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCC
Q 015671          100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKL  178 (403)
Q Consensus       100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L  178 (403)
                      .+++|+.|++.++.+.       .++ .+.. ++|++|++++|.++.+|....+++|++|++++|.+..++. +..+++|
T Consensus        44 ~l~~l~~L~l~~~~i~-------~l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L  114 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-------SID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNL  114 (466)
T ss_dssp             HHHTCCEEECCSSCCC-------CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             HhccccEEecCCCCCc-------cCc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCC
Confidence            3568999999988763       333 3445 9999999999999999874489999999999999998877 8999999


Q ss_pred             cEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCc--------------------cCCCCCCCCEEeecCCC
Q 015671          179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPS--------------------EIFNLEFLTKLDLSGCS  238 (403)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------------------~~~~l~~L~~L~l~~~~  238 (403)
                      ++|++++| .+. .+   ..+.++++|++|++++|.+.. ++.                    .+..+++|+.|++++|.
T Consensus       115 ~~L~L~~n-~l~-~~---~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          115 TGLTLFNN-QIT-DI---DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK  188 (466)
T ss_dssp             CEEECCSS-CCC-CC---GGGTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CEEECCCC-CCC-CC---hHHcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence            99999998 333 33   347788899999998876443 221                    14455666666666654


Q ss_pred             CCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccC
Q 015671          239 KLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLG  317 (403)
Q Consensus       239 ~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  317 (403)
                       +..++.... ++|++|++++|.++.++. ++.+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+..+  +.
T Consensus       189 -l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          189 -VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             -CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             -CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hh
Confidence             333333333 677777777777665544 5667777777777776443 3 246677888888888877666544  77


Q ss_pred             CCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCC
Q 015671          318 QLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ  357 (403)
Q Consensus       318 ~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  357 (403)
                      .+++|+.|++++|.++.++. +..+++|+.|++++|...+
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~  301 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED  301 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC
T ss_pred             cCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC
Confidence            88888888888888887765 7788888888888886544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=5.6e-24  Score=198.30  Aligned_cols=250  Identities=16%  Similarity=0.169  Sum_probs=199.7

Q ss_pred             CCCcEEEEeccCCCCCCcccccccC-CCCC-CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccccccc-cccCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQ-DPGF-AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLWDC-VKHYS  176 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~-~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~~~-~~~l~  176 (403)
                      ++|++|++++|.+.       .++. .+.. ++|++|++++|.++.++ ..+ .+++|++|++++|.++.++.. ++.++
T Consensus        52 ~~L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  124 (353)
T 2z80_A           52 EAVKSLDLSNNRIT-------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS  124 (353)
T ss_dssp             TTCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred             ccCcEEECCCCcCc-------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence            58999999999874       3443 4555 99999999999998875 445 789999999999999988765 88999


Q ss_pred             CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCcc-CccCCCCCCCCEEeecCCCCCCCCccccc--CCCcE
Q 015671          177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSL-PSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISW  253 (403)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~  253 (403)
                      +|++|++++| .+. .++....+.++++|++|++++|.....+ +..++.+++|+.|++++|...+..|..+.  ++|++
T Consensus       125 ~L~~L~L~~n-~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  202 (353)
T 2z80_A          125 SLTFLNLLGN-PYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH  202 (353)
T ss_dssp             TCSEEECTTC-CCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred             cCCEEECCCC-CCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence            9999999998 344 4554346888999999999998544444 56788899999999999876655555554  88999


Q ss_pred             EEecCccCcccChhh-hCCCCCCEEecccCcCCCcCCccc---cCCCCCcEEeecCCCCCc----ccCcccCCCCCCCEE
Q 015671          254 LFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSL---CKLKSLGVLNLYGCSNLQ----RLPECLGQLSSPITL  325 (403)
Q Consensus       254 L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L  325 (403)
                      |++++|.++.+|..+ ..+++|+.|++++|.+.+..+..+   ...+.++.++++++.+.+    .+|.++..+++|+.|
T Consensus       203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L  282 (353)
T 2z80_A          203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL  282 (353)
T ss_dssp             EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred             ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence            999999998877654 568999999999998776544332   346678899999887765    467788899999999


Q ss_pred             EccCCCCcccChhh-hcCCCCCEEeccCCcCCCcCC
Q 015671          326 GLTETNIERIPESI-IQHFVLRYLLLSYSERLQSLP  360 (403)
Q Consensus       326 ~l~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~lp  360 (403)
                      ++++|.++.+|..+ ..+++|++|++++|+..+..|
T Consensus       283 ~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            99999999998875 889999999999998765443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=4.6e-23  Score=208.77  Aligned_cols=243  Identities=18%  Similarity=0.089  Sum_probs=146.1

Q ss_pred             CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-C-CC
Q 015671           76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-L-SA  152 (403)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l  152 (403)
                      ..++.+.+.  ......+.+..|.++++|++|++++|.+.+..      +..+.. ++|++|++++|.+..+|.. + .+
T Consensus        25 ~~l~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l   96 (680)
T 1ziw_A           25 TNITVLNLT--HNQLRRLPAANFTRYSQLTSLDVGFNTISKLE------PELCQKLPMLKVLNLQHNELSQLSDKTFAFC   96 (680)
T ss_dssp             TTCSEEECC--SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC------TTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCcEEECC--CCCCCCcCHHHHhCCCcCcEEECCCCccCccC------HHHHhcccCcCEEECCCCccCccChhhhccC
Confidence            345554443  33333455667888899999999888775321      233333 7888899988888888763 4 68


Q ss_pred             CCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCC--CCCCC
Q 015671          153 EKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF--NLEFL  229 (403)
Q Consensus       153 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L  229 (403)
                      ++|++|++++|.+..++ ..++.+++|++|++++|. +.+..  +..+.++++|++|++++|.+.+..+..++  .+++|
T Consensus        97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A           97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             CCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccC--chhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence            88899999888888776 568888888999888883 33122  23567788888888888775554443332  45677


Q ss_pred             CEEeecCCCCCCCCccccc-----------------------------CCCcEEEecCccCccc-ChhhhCCC--CCCEE
Q 015671          230 TKLDLSGCSKLKRLPEISS-----------------------------GNISWLFLTGTAIKEL-PSSIESLL--RLEYL  277 (403)
Q Consensus       230 ~~L~l~~~~~~~~~~~~~~-----------------------------~~L~~L~l~~~~~~~l-~~~~~~l~--~L~~L  277 (403)
                      +.|++++|...+..|..+.                             ++|+.|++++|.++.. |..+..++  +|+.|
T Consensus       174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L  253 (680)
T 1ziw_A          174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML  253 (680)
T ss_dssp             SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred             cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence            7777777654333222111                             2344555555544432 22333332  25555


Q ss_pred             ecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccC
Q 015671          278 DLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE  329 (403)
Q Consensus       278 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  329 (403)
                      ++++|.+.+..|..++.+++|+.|++++|.+.+..|..+.++++|+.|++++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (680)
T 1ziw_A          254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR  305 (680)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred             ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence            5555554444444455555555555555555444444444444444444444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=1.7e-23  Score=206.64  Aligned_cols=250  Identities=16%  Similarity=0.200  Sum_probs=182.4

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCcccccc-ccccCCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLWD-CVKHYSK  177 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~  177 (403)
                      ++|++|++++|.+.+      ..+..+.. ++|++|++++|.+..++ ..+ .+++|++|++++|.+..++. .++.+++
T Consensus        26 ~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLSFNKITY------IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             TTCCEEECCSSCCCE------ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred             CCccEEECcCCccCc------cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence            789999999998742      23455666 99999999999998876 445 79999999999999998865 5999999


Q ss_pred             CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc--------
Q 015671          178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS--------  248 (403)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------  248 (403)
                      |++|++++|. +. .++.+..++++++|++|++++|...+.+| ..++.+++|+.|++++|...+..|....        
T Consensus       100 L~~L~Ls~n~-l~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A          100 LKYLNLMGNP-YQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             CCEEECTTCC-CS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             CcEEECCCCc-cc-ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            9999999993 33 33334578899999999999998677776 5788999999999999876554443322        


Q ss_pred             ------------------CCCcEEEecCccCcccC---hh-----------------------------hhCC-------
Q 015671          249 ------------------GNISWLFLTGTAIKELP---SS-----------------------------IESL-------  271 (403)
Q Consensus       249 ------------------~~L~~L~l~~~~~~~l~---~~-----------------------------~~~l-------  271 (403)
                                        ++|++|++++|.++.++   ..                             +..+       
T Consensus       178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~  257 (549)
T 2z81_A          178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE  257 (549)
T ss_dssp             EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred             ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence                              45666666666555321   00                             0011       


Q ss_pred             ----------------------------------------------------CCCCEEecccCcCCCcCCccc-cCCCCC
Q 015671          272 ----------------------------------------------------LRLEYLDLSDCKRLKSLPSSL-CKLKSL  298 (403)
Q Consensus       272 ----------------------------------------------------~~L~~L~l~~~~~~~~~~~~~-~~l~~L  298 (403)
                                                                          ++|+.|++++|.+ +.+|..+ +.+++|
T Consensus       258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L  336 (549)
T 2z81_A          258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSL  336 (549)
T ss_dssp             EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTC
T ss_pred             cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccc
Confidence                                                                1233333333331 2344433 357888


Q ss_pred             cEEeecCCCCCcccC---cccCCCCCCCEEEccCCCCcccC---hhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          299 GVLNLYGCSNLQRLP---ECLGQLSSPITLGLTETNIERIP---ESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       299 ~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      +.|++++|.+.+.+|   ..+..+++|+.|++++|.++.++   ..+..+++|++|++++|... .+|.
T Consensus       337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~  404 (549)
T 2z81_A          337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD  404 (549)
T ss_dssp             CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS
T ss_pred             cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh
Confidence            999999988877654   33678899999999999998765   34788999999999998654 6776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=3.4e-23  Score=187.10  Aligned_cols=202  Identities=20%  Similarity=0.227  Sum_probs=103.8

Q ss_pred             CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCcccc-ccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          131 AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      ++|++|+++++.++.++.. + .+++|++|++++|.+..+ +..+..+++|++|++++|..+. .++ ...+..+++|++
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~-~~~~~~l~~L~~  109 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVD-PATFHGLGRLHT  109 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCC-TTTTTTCTTCCE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccC-HHHhcCCcCCCE
Confidence            3444555555444444321 2 344555555555544443 3344444555555554442222 221 123444444455


Q ss_pred             EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCC
Q 015671          208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLK  286 (403)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~  286 (403)
                      |++++|.+....+..+..+++|+.|+                      +++|.++.++.. +..+++|+.|++++|.+.+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~----------------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLY----------------------LQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEE----------------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEE----------------------CCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            55554444333334444444444444                      444555544432 4556666666666665444


Q ss_pred             cCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671          287 SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       287 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l  356 (403)
                      ..+..+..+++|+.|++++|.+.+..|.++..+++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            333345566666666666666655556666666666666666666665543 3566666666666666544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=2.6e-22  Score=181.28  Aligned_cols=218  Identities=20%  Similarity=0.172  Sum_probs=159.1

Q ss_pred             eEEEecCCCCCCCCCCCCCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671          134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG  212 (403)
Q Consensus       134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (403)
                      +.++.++..++.+|..+ .++|++|++++|.+..++ ..+..+++|++|++++| .+. .+. ...+.++++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~-~~~-~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLA-RID-AAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-EEC-TTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccc-eeC-HhhcCCccCCCEEeCCC
Confidence            56777777777777644 457888888888888765 45777888888888777 233 221 23566777777777777


Q ss_pred             CCCCCcc-CccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCc
Q 015671          213 SKSLKSL-PSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       213 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~  290 (403)
                      |.....+ +..+..+++|++|++++|.                      ++.+ |..+..+++|++|++++|.+.+..+.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCG----------------------LQELGPGLFRGLAALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCc----------------------CCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence            7533333 5556667777777776643                      4434 45578899999999999997766666


Q ss_pred             cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc-ChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCC
Q 015671          291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI-PESIIQHFVLRYLLLSYSERLQSLPSPLFLARGC  369 (403)
Q Consensus       291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c  369 (403)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|...+ +|..  .+..+
T Consensus       148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~--~~~~l  224 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTE--ALAPL  224 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHH--HHTTC
T ss_pred             HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHH--HcccC
Confidence            688999999999999988776666789999999999999999955 7788999999999999997654 4321  13456


Q ss_pred             CCCCCchhhhc
Q 015671          370 LAMQPFLGIVE  380 (403)
Q Consensus       370 ~~l~~~~~~~~  380 (403)
                      ++|+.+....+
T Consensus       225 ~~L~~L~l~~N  235 (285)
T 1ozn_A          225 RALQYLRLNDN  235 (285)
T ss_dssp             TTCCEEECCSS
T ss_pred             cccCEEeccCC
Confidence            66665444333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.90  E-value=8.1e-22  Score=199.61  Aligned_cols=262  Identities=21%  Similarity=0.223  Sum_probs=149.1

Q ss_pred             cChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC------CCCC----CC-CCCCceEEEc
Q 015671           93 LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK------SFPS----NL-SAEKLVLFEV  160 (403)
Q Consensus        93 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~------~lp~----~~-~l~~L~~L~l  160 (403)
                      +.+..|..+++|++|++++|.+.+      ..+..+.. ++|++|+++++...      .+|.    .+ .+++|++|++
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l  336 (680)
T 1ziw_A          263 VGNDSFAWLPQLEYFFLEYNNIQH------LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM  336 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBSE------ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred             cCcccccCcccccEeeCCCCccCc------cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence            345567777777777777776642      22333444 56666666544321      2331    22 4666666666


Q ss_pred             cCCCccccc-cccccCCCCcEeecccccCccccCCC-------------------------CCCCCCCCCCcEEEecCCC
Q 015671          161 PENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPN-------------------------PTLMPRLNKVVILNLRGSK  214 (403)
Q Consensus       161 ~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~-------------------------~~~~~~l~~L~~L~l~~~~  214 (403)
                      ++|.+..++ ..+..+++|++|++++|..-...++.                         ...+..+++|+.|++++|.
T Consensus       337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  416 (680)
T 1ziw_A          337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE  416 (680)
T ss_dssp             CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence            666666543 34566666666666655210001110                         1234455555555555555


Q ss_pred             CCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCc---ccChhhhCCCCCCEEecccCcCCCcC
Q 015671          215 SLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIK---ELPSSIESLLRLEYLDLSDCKRLKSL  288 (403)
Q Consensus       215 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~  288 (403)
                      +.+.+| ..+..+++|+.|++++|......+..+.  ++|+.|++++|.++   .+|..+..+++|+.|++++|.+.+..
T Consensus       417 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~  496 (680)
T 1ziw_A          417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN  496 (680)
T ss_dssp             CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC
Confidence            444333 3445555555555555543222222222  56666666665553   44556667777777777777766555


Q ss_pred             CccccCCCCCcEEeecCCCCCccc--------CcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCcC
Q 015671          289 PSSLCKLKSLGVLNLYGCSNLQRL--------PECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQSL  359 (403)
Q Consensus       289 ~~~~~~l~~L~~L~l~~~~~~~~~--------~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l  359 (403)
                      +..+..+++|+.|++++|.+.+..        +..+.++++|+.|++++|.++.+|. .+..+++|+.|++++|... .+
T Consensus       497 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l  575 (680)
T 1ziw_A          497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TL  575 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cC
Confidence            555677777777777777665431        1235677777777777777777765 3677778888888777544 44


Q ss_pred             CC
Q 015671          360 PS  361 (403)
Q Consensus       360 p~  361 (403)
                      |.
T Consensus       576 ~~  577 (680)
T 1ziw_A          576 PA  577 (680)
T ss_dssp             CT
T ss_pred             CH
Confidence            44

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=1.1e-21  Score=196.75  Aligned_cols=114  Identities=22%  Similarity=0.212  Sum_probs=91.4

Q ss_pred             CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCC-cCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEE
Q 015671          249 GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLK-SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLG  326 (403)
Q Consensus       249 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  326 (403)
                      .+++.++++.|.+...+ ..+..++.++.|++++|.... ..|..+..+++|+.|++++|.+.+..|..+.++++|+.|+
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence            56666777777666443 455778899999999887554 4566788899999999999998888888899999999999


Q ss_pred             ccCCCCcccC-hhhhcCCCCCEEeccCCcCCCcCCCC
Q 015671          327 LTETNIERIP-ESIIQHFVLRYLLLSYSERLQSLPSP  362 (403)
Q Consensus       327 l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp~~  362 (403)
                      |++|.++.++ ..+..+++|+.|++++|+..+..|..
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  561 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  561 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence            9999999765 45788999999999999877666653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=3.8e-21  Score=184.70  Aligned_cols=209  Identities=23%  Similarity=0.300  Sum_probs=125.8

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL  210 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  210 (403)
                      ++|++|++++|.++.+|...  .+|++|++++|.+..+| .++.+++|++|++++| .+. .+|.   .  .++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~-~l~~---~--~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLK-KLPD---L--PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCS-SCCC---C--CTTCCEEEC
T ss_pred             CCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCC-cCCC---C--cCcccEEEC
Confidence            55666666666555555432  35666666666655554 4566666666666665 222 2221   1  135666666


Q ss_pred             cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCC--cC
Q 015671          211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLK--SL  288 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~  288 (403)
                      ++|.+. .+|. ++.+++|+.|++++|.. ..+|... ++|+.|++++|.++.+|..   +++|+.|++++|.+.+  .+
T Consensus       223 ~~n~l~-~lp~-~~~l~~L~~L~l~~N~l-~~l~~~~-~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~  295 (454)
T 1jl5_A          223 GNNILE-ELPE-LQNLPFLTTIYADNNLL-KTLPDLP-PSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL  295 (454)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCC-SSCCSCC-TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC
T ss_pred             cCCcCC-cccc-cCCCCCCCEEECCCCcC-Ccccccc-cccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc
Confidence            666543 5553 66777777777777543 3344322 5666666666666665542   3556666666665444  22


Q ss_pred             Cccc-------------cCC-CCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCc
Q 015671          289 PSSL-------------CKL-KSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSE  354 (403)
Q Consensus       289 ~~~~-------------~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~  354 (403)
                      |..+             ..+ ++|+.|++++|.+.+ +|..   +++|+.|++++|.++.+|.   .+++|++|++++|+
T Consensus       296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred             CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCC
Confidence            2111             122 477788887776654 5543   5788888888888888876   46889999999888


Q ss_pred             CCC--cCCCCe
Q 015671          355 RLQ--SLPSPL  363 (403)
Q Consensus       355 ~l~--~lp~~~  363 (403)
                      ..+  .+|...
T Consensus       369 l~~l~~ip~~l  379 (454)
T 1jl5_A          369 LREFPDIPESV  379 (454)
T ss_dssp             CSSCCCCCTTC
T ss_pred             CCcCCCChHHH
Confidence            777  677653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=6.7e-24  Score=194.72  Aligned_cols=244  Identities=12%  Similarity=0.020  Sum_probs=191.6

Q ss_pred             hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccc
Q 015671           95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVK  173 (403)
Q Consensus        95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~  173 (403)
                      ...+..+++|++|++++|.+.+.      .+..+.. ++|++|++++|.+..++....+++|++|++++|.+..++    
T Consensus        27 ~~~~~~~~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----   96 (317)
T 3o53_A           27 ASLRQSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----   96 (317)
T ss_dssp             HHHHTTGGGCSEEECTTSCCCCC------CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----
T ss_pred             HHHhccCCCCCEEECcCCccCcC------CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----
Confidence            34566778999999999987532      2234445 889999999999877665447899999999999988776    


Q ss_pred             cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CC
Q 015671          174 HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GN  250 (403)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~  250 (403)
                      ..++|++|++++|. +. .++    ...+++|++|++++|.+....+..++.+++|+.|++++|......+....   ++
T Consensus        97 ~~~~L~~L~l~~n~-l~-~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  170 (317)
T 3o53_A           97 VGPSIETLHAANNN-IS-RVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (317)
T ss_dssp             ECTTCCEEECCSSC-CS-EEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             CCCCcCEEECCCCc-cC-CcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence            34899999999983 33 222    12367889999999987776666788899999999999766554444332   89


Q ss_pred             CcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCC
Q 015671          251 ISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET  330 (403)
Q Consensus       251 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  330 (403)
                      |++|++++|.++.++.. ..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus       171 L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          171 LEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             CCEEECCCCcCcccccc-cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence            99999999999887643 358999999999998654 5556888999999999998766 57778889999999999999


Q ss_pred             CCc--ccChhhhcCCCCCEEeccCCcCCC
Q 015671          331 NIE--RIPESIIQHFVLRYLLLSYSERLQ  357 (403)
Q Consensus       331 ~l~--~l~~~~~~~~~L~~L~l~~c~~l~  357 (403)
                      .+.  .++..+..++.|+.|++++|+.++
T Consensus       248 ~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CccCcCHHHHHhccccceEEECCCchhcc
Confidence            998  778888899999999998765443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=1.3e-21  Score=188.32  Aligned_cols=222  Identities=18%  Similarity=0.202  Sum_probs=187.0

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCcccccc-ccccCCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLWD-CVKHYSK  177 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~  177 (403)
                      +++++|++++|.+.      ...+..+.. ++|++|++++|.+..++ ..+ .+++|++|++++|.+..++. .+..+++
T Consensus        75 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  148 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK  148 (452)
T ss_dssp             TTCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred             CCccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence            68999999999874      223455666 99999999999998876 445 79999999999999998875 5888999


Q ss_pred             CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCc-cCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEE
Q 015671          178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPS-EIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLF  255 (403)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~  255 (403)
                      |++|++++|. +. .++ ...+.++++|+.|++++|...+.++. .+..+++|+.|++++|. +..+|.... ++|+.|+
T Consensus       149 L~~L~L~~N~-l~-~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~  224 (452)
T 3zyi_A          149 LRELWLRNNP-IE-SIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELE  224 (452)
T ss_dssp             CCEEECCSCC-CC-EEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEE
T ss_pred             CCEEECCCCC-cc-eeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEE
Confidence            9999999983 33 343 24678899999999999777777764 57889999999999975 445666555 9999999


Q ss_pred             ecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          256 LTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       256 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      +++|.++.+ |..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            999999977 567899999999999999988888888999999999999999888777777889999999999998865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=1.4e-21  Score=187.61  Aligned_cols=222  Identities=17%  Similarity=0.210  Sum_probs=185.4

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCcccccc-ccccCCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLWD-CVKHYSK  177 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~  177 (403)
                      ++++.|++++|.+.      ...+..+.. ++|++|++++|.+..++. .+ .+++|++|++++|.++.++. .+..+++
T Consensus        64 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  137 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK  137 (440)
T ss_dssp             TTCSEEECCSCCCC------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred             CCCcEEEccCCcCC------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence            68999999999874      122345556 999999999999988763 34 68999999999999998875 6889999


Q ss_pred             CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCc-cCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEE
Q 015671          178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPS-EIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLF  255 (403)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~  255 (403)
                      |++|++++|. +. .++ ...+.++++|++|++++|.....++. .+.++++|+.|++++|. ++.+|.... ++|+.|+
T Consensus       138 L~~L~L~~N~-i~-~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~  213 (440)
T 3zyj_A          138 LKELWLRNNP-IE-SIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELD  213 (440)
T ss_dssp             CCEEECCSCC-CC-EEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEE
T ss_pred             CceeeCCCCc-cc-ccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEE
Confidence            9999999983 33 333 24678899999999999777777664 57889999999999964 556676555 8999999


Q ss_pred             ecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          256 LTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       256 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      +++|.++.+ |..+..+++|+.|++++|.+.+..+..+.++++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            999999977 567899999999999999988888888999999999999999888777778889999999999998865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=1.1e-20  Score=187.28  Aligned_cols=227  Identities=20%  Similarity=0.167  Sum_probs=139.5

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI  181 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  181 (403)
                      ++|++|++++|.+.       .+|.  ..++|++|++++|.++.+|.  .+++|++|++++|.++.+|.   .+++|+.|
T Consensus        61 ~~L~~L~L~~N~l~-------~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNLT-------SLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCCS-------CCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCCC-------CCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence            45555555555542       2222  11455555555555555554  44555555555555555443   33444455


Q ss_pred             ecccccCccccCCCCC--------------CC-CCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccc
Q 015671          182 IHAVCHRLIAKTPNPT--------------LM-PRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEI  246 (403)
Q Consensus       182 ~l~~~~~~~~~~~~~~--------------~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  246 (403)
                      ++++| .+. .+|...              .+ ..+++|+.|++++|.+. .+|   ..+++|+.|++++|.. +.+|..
T Consensus       127 ~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l-~~l~~~  199 (622)
T 3g06_A          127 WIFGN-QLT-SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQL-ASLPTL  199 (622)
T ss_dssp             ECCSS-CCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCC-SCCCCC
T ss_pred             ECCCC-CCC-cCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCC-CCCCCc
Confidence            54444 122 222100              00 01234455555554422 233   2347777888877543 334432


Q ss_pred             ccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEE
Q 015671          247 SSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLG  326 (403)
Q Consensus       247 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  326 (403)
                      . ++|+.|++++|.++.+|.   .+++|+.|++++|.+.+ +|   ..+++|+.|++++|.+. .+|.   .+++|+.|+
T Consensus       200 ~-~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~  267 (622)
T 3g06_A          200 P-SELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLS  267 (622)
T ss_dssp             C-TTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred             c-chhhEEECcCCcccccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence            2 678888888888877774   34789999999887554 55   35688999999998765 4655   578899999


Q ss_pred             ccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          327 LTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       327 l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      +++|.++.+|..+..+++|+.|++++|+..+..|.
T Consensus       268 Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          268 VYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            99999999999999999999999999987765544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=1.8e-22  Score=195.76  Aligned_cols=232  Identities=12%  Similarity=0.012  Sum_probs=173.3

Q ss_pred             CCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCc
Q 015671          101 MPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLN  179 (403)
Q Consensus       101 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~  179 (403)
                      +++|++|++++|.+.+.      .+..+.. ++|++|++++|.+..++....+++|++|++++|.+..++.    .++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~  102 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIE  102 (487)
T ss_dssp             GGGCCEEECCSSCCCCC------CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred             CCCccEEEeeCCcCCCC------CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence            34899999998887532      2234555 8899999998888766553378889999999998887763    38889


Q ss_pred             EeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEe
Q 015671          180 QIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFL  256 (403)
Q Consensus       180 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l  256 (403)
                      +|++++|. +. .++.    ..+++|+.|++++|.+.+..|..++.+++|+.|++++|...+..|..+.   ++|+.|++
T Consensus       103 ~L~L~~N~-l~-~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          103 TLHAANNN-IS-RVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             EEECCSSC-CC-CEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             EEECcCCc-CC-CCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            99998883 33 2221    2457788999998887777777778888899999988776655554432   78888888


Q ss_pred             cCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc--c
Q 015671          257 TGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE--R  334 (403)
Q Consensus       257 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~--~  334 (403)
                      ++|.++.+|. ...+++|+.|++++|.+.+ +|+.+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.  .
T Consensus       177 s~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          177 QYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCCccccccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            8888887754 3358888888888888655 44557788888888888877664 6777788888888888888887  6


Q ss_pred             cChhhhcCCCCCEEecc
Q 015671          335 IPESIIQHFVLRYLLLS  351 (403)
Q Consensus       335 l~~~~~~~~~L~~L~l~  351 (403)
                      +|.++..++.|+.++++
T Consensus       254 ~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          254 LRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHhCCCCcEEecc
Confidence            77777777888877775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=8.7e-21  Score=170.44  Aligned_cols=215  Identities=17%  Similarity=0.121  Sum_probs=139.7

Q ss_pred             ecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCC
Q 015671          138 WHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSL  216 (403)
Q Consensus       138 l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  216 (403)
                      ..+..+..+|..+. ++|++|++++|.+..++. .+..+++|++|++++| .+. .++ ...+.++++|++|++++|.+.
T Consensus        14 c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~-~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           14 CMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQ-TIE-DGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             CTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCC-EEC-TTTTTTCTTCCEEECTTCCCC
T ss_pred             ecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCC-ccC-HHHccCCcCCCEEECCCCccC
Confidence            33444555554332 356666666666665543 5566666666666666 222 222 124555666666666666654


Q ss_pred             CccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcc--cChhhhCCCCCCEEecccCcCCCcCCccc
Q 015671          217 KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKE--LPSSIESLLRLEYLDLSDCKRLKSLPSSL  292 (403)
Q Consensus       217 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~  292 (403)
                      +..+..+..+++|+.|++++|......+..+.  ++|++|++++|.++.  +|..+..+++|+.|++++|.+.+..+..+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence            44445566666666666666544333222222  667777777777764  67788889999999999998776666666


Q ss_pred             cCCCCCc----EEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChh-hhcCCCCCEEeccCCcCCC
Q 015671          293 CKLKSLG----VLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPES-IIQHFVLRYLLLSYSERLQ  357 (403)
Q Consensus       293 ~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~  357 (403)
                      ..++.|+    .|++++|.+.+..+..+ ...+|+.|++++|.++.+|.. +..+++|+.|++++|+...
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             hhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            6555565    89999988765544443 445899999999999977764 5789999999999997653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=6.5e-22  Score=184.28  Aligned_cols=246  Identities=15%  Similarity=0.121  Sum_probs=196.5

Q ss_pred             ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCC
Q 015671           77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-L-SAE  153 (403)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l~  153 (403)
                      .++.+.+....  ...+.+..|.++++|++|++++|.+.      ...+..+.. ++|++|++++|.++.+|.. + .++
T Consensus        53 ~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  124 (353)
T 2z80_A           53 AVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGIN------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS  124 (353)
T ss_dssp             TCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred             cCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccC------ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence            45555444333  33455668999999999999999874      122345666 9999999999999999875 4 799


Q ss_pred             CceEEEccCCCcccccc--ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCE
Q 015671          154 KLVLFEVPENDIEQLWD--CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTK  231 (403)
Q Consensus       154 ~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  231 (403)
                      +|++|++++|.+..+|.  .+..+++|++|++++|..+. .++ ...+.++++|++|++++|.+.+..|..++.+++|++
T Consensus       125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  202 (353)
T 2z80_A          125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH  202 (353)
T ss_dssp             TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred             cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence            99999999999999886  78899999999999985444 443 246788999999999999987777888999999999


Q ss_pred             EeecCCCCCCCCccccc---CCCcEEEecCccCcccCh----hhhCCCCCCEEecccCcCCC----cCCccccCCCCCcE
Q 015671          232 LDLSGCSKLKRLPEISS---GNISWLFLTGTAIKELPS----SIESLLRLEYLDLSDCKRLK----SLPSSLCKLKSLGV  300 (403)
Q Consensus       232 L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~  300 (403)
                      |++++|.. +.+|....   ++|+.|++++|.++.++.    .....+.++.++++++.+.+    .+|..+..+++|+.
T Consensus       203 L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~  281 (353)
T 2z80_A          203 LILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE  281 (353)
T ss_dssp             EEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred             ecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence            99999764 55555432   899999999999986542    12456788899998887654    46777889999999


Q ss_pred             EeecCCCCCcccCcc-cCCCCCCCEEEccCCCCcc
Q 015671          301 LNLYGCSNLQRLPEC-LGQLSSPITLGLTETNIER  334 (403)
Q Consensus       301 L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~  334 (403)
                      |++++|.+. .+|.. +..+++|+.|++++|.+..
T Consensus       282 L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          282 LEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            999998877 55655 5899999999999999883

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=3.6e-20  Score=183.55  Aligned_cols=222  Identities=21%  Similarity=0.155  Sum_probs=153.8

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEe
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQI  181 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  181 (403)
                      .++++|++++|.+.       .+|..+. ++|++|++++|.++.+|.  .+++|++|++++|.++.+|.   .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~-------~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-------TLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-------CCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-------ccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence            46899999999873       5555444 899999999999999998  67899999999999999987   78999999


Q ss_pred             ecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccC
Q 015671          182 IHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAI  261 (403)
Q Consensus       182 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  261 (403)
                      ++++| .+. .+|.     .+++|+.|++++|.+ ..+|.   .+++|++|++++|.. ..+|.. ..+|+.|++++|.+
T Consensus       107 ~Ls~N-~l~-~l~~-----~l~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~l-~~l~~~-~~~L~~L~L~~N~l  173 (622)
T 3g06_A          107 SIFSN-PLT-HLPA-----LPSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDNQL-ASLPAL-PSELCKLWAYNNQL  173 (622)
T ss_dssp             EECSC-CCC-CCCC-----CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCC-SCCCCC-CTTCCEEECCSSCC
T ss_pred             ECcCC-cCC-CCCC-----CCCCcCEEECCCCCC-CcCCC---CCCCCCEEECcCCcC-CCcCCc-cCCCCEEECCCCCC
Confidence            99998 333 3432     567788888888774 34565   347888888888643 334432 25666666666666


Q ss_pred             cccChhhhCCCCCCEEecccCcCCCcCCccc-----------------cCCCCCcEEeecCCCCCcccCcccCCCCCCCE
Q 015671          262 KELPSSIESLLRLEYLDLSDCKRLKSLPSSL-----------------CKLKSLGVLNLYGCSNLQRLPECLGQLSSPIT  324 (403)
Q Consensus       262 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  324 (403)
                      +.+|   ..+++|+.|++++|.+.+ +|..+                 ..+++|+.|++++|.+.+ +|   ..+++|+.
T Consensus       174 ~~l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~  245 (622)
T 3g06_A          174 TSLP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKE  245 (622)
T ss_dssp             SCCC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred             CCCc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence            6665   344566666666655432 22211                 013567777777765544 44   34567777


Q ss_pred             EEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          325 LGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       325 L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                      |++++|.++.+|.   .+++|+.|++++|... .+|.
T Consensus       246 L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~  278 (622)
T 3g06_A          246 LMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPE  278 (622)
T ss_dssp             EECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred             EECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCH
Confidence            7777777777775   5577778888777544 6665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=9.5e-20  Score=174.97  Aligned_cols=207  Identities=21%  Similarity=0.252  Sum_probs=107.0

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL  210 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  210 (403)
                      ++|++|++++|.++.+|....+++|++|++++|.++.+|...   .+|++|++++| .+. .+|   .++++++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~-~l~---~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLE-ELP---ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCS-SCC---CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCC-cCc---cccCCCCCCEEEC
Confidence            355555555555555553224555555555555555554322   35555555555 222 222   3555555666666


Q ss_pred             cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCC
Q 015671          211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLP  289 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~  289 (403)
                      ++|.+.+ +|..   .++|+.|++++|.. ..+|.+.. ++|++|++++|.++.+|.   .+++|+.|++++|.+.+ +|
T Consensus       203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~  273 (454)
T 1jl5_A          203 DNNSLKK-LPDL---PLSLESIVAGNNIL-EELPELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LP  273 (454)
T ss_dssp             CSSCCSS-CCCC---CTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CC
T ss_pred             CCCcCCc-CCCC---cCcccEEECcCCcC-CcccccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cC
Confidence            6555332 3331   23566666665533 24454322 666666666666665553   23566666666665443 33


Q ss_pred             ccccCCCCCcEEeecCCCCCc--ccCccc-------------CCC-CCCCEEEccCCCCcccChhhhcCCCCCEEeccCC
Q 015671          290 SSLCKLKSLGVLNLYGCSNLQ--RLPECL-------------GQL-SSPITLGLTETNIERIPESIIQHFVLRYLLLSYS  353 (403)
Q Consensus       290 ~~~~~l~~L~~L~l~~~~~~~--~~~~~l-------------~~l-~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c  353 (403)
                      ..   +++|+.|++++|.+.+  .+|..+             ..+ ++|+.|++++|.++.+|..   +++|+.|++++|
T Consensus       274 ~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N  347 (454)
T 1jl5_A          274 EL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN  347 (454)
T ss_dssp             CC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS
T ss_pred             cc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCC
Confidence            32   3566666666665544  222111             112 3566666666666655543   466777777766


Q ss_pred             cCCCcCCC
Q 015671          354 ERLQSLPS  361 (403)
Q Consensus       354 ~~l~~lp~  361 (403)
                      ... .+|.
T Consensus       348 ~l~-~lp~  354 (454)
T 1jl5_A          348 HLA-EVPE  354 (454)
T ss_dssp             CCS-CCCC
T ss_pred             ccc-cccc
Confidence            433 4554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=2.8e-21  Score=187.37  Aligned_cols=211  Identities=15%  Similarity=0.043  Sum_probs=176.4

Q ss_pred             CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE
Q 015671          131 AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL  208 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  208 (403)
                      ++|++|++++|.+..++ ..+ .+++|++|++++|.+...++ +..+++|++|++++| .+. .++      ..++|++|
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~-~l~------~~~~L~~L  104 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQ-ELL------VGPSIETL  104 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEE-EEE------ECTTCCEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCC-CCC------CCCCcCEE
Confidence            68999999999999886 345 79999999999999987765 899999999999999 343 333      23789999


Q ss_pred             EecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcc-cChhhh-CCCCCCEEecccCcC
Q 015671          209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKE-LPSSIE-SLLRLEYLDLSDCKR  284 (403)
Q Consensus       209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~-l~~~~~-~l~~L~~L~l~~~~~  284 (403)
                      ++++|.+.+..+.   .+++|+.|++++|...+..|..+.  ++|+.|++++|.++. .|..+. .+++|+.|++++|.+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            9999987665443   468999999999877665565544  999999999999986 455554 799999999999997


Q ss_pred             CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671          285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                      .+. |. ...+++|+.|++++|.+.+ +|+.+..+++|+.|++++|.++.+|..+..+++|+.|++++|+..
T Consensus       182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          182 YDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            655 33 3468999999999988776 445588999999999999999999999999999999999999876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=2.6e-21  Score=173.41  Aligned_cols=200  Identities=18%  Similarity=0.156  Sum_probs=124.9

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL  210 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  210 (403)
                      .+|+.|+++++.+..++....+++|++|++++|.+..++ .+..+++|++|++++| .+. .++ ...+.++++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~-~~~-~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQ-SLP-NGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCC-CCC-TTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccC-ccC-hhHhcCCcCCCEEEC
Confidence            555566665555555544334555555555555555442 4445555555555555 222 111 112444455555555


Q ss_pred             cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCCcCC
Q 015671          211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLKSLP  289 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~  289 (403)
                      ++|.+.+..+..++.+++|+.|+++                      +|.++.++.. +..+++|+.|++++|.+.+..+
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~----------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLA----------------------HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECC----------------------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcCCccCHHHhccCCCCCEEECC----------------------CCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            5554433333334444445555444                      4555555543 4778888888888888776656


Q ss_pred             ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCC
Q 015671          290 SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSP  362 (403)
Q Consensus       290 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~  362 (403)
                      ..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.      +.++.|+.|+++.|...+.+|..
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCc
Confidence            56778888999999888888777777788889999999888765      34567888888888888888875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=4.1e-20  Score=167.06  Aligned_cols=195  Identities=22%  Similarity=0.179  Sum_probs=113.8

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN  209 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  209 (403)
                      ++++.++++++.++.+|..+. +++++|++++|.+..++ ..+..+++|++|++++| .+. .++   ....+++|++|+
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~---~~~~l~~L~~L~   83 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELT-KLQ---VDGTLPVLGTLD   83 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCC-EEE---CCSCCTTCCEEE
T ss_pred             CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccC-ccc---CCCCCCcCCEEE
Confidence            556677777777777776553 57778888888777653 56777888888888877 232 222   235677778888


Q ss_pred             ecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCC
Q 015671          210 LRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLK  286 (403)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~  286 (403)
                      +++|.+ ..+|..+..+++|+.|++++|......+..+.  ++|++|++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus        84 Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            877764 45666666777777777777543322222221  4455555555555544432 3455556666666555443


Q ss_pred             cCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          287 SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       287 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      ..+..+..+++|+.|++++|.+. .+|..+...++|+.+++.+|.+.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            32233445555666666554443 44445555555555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=9.2e-20  Score=163.16  Aligned_cols=199  Identities=21%  Similarity=0.213  Sum_probs=110.1

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN  209 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  209 (403)
                      ...++++++++.++.+|..+. .++++|++++|.+..++. .+..+++|++|++++| .+. .++. ..+.++++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~i~~-~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQ-TLPA-GIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCS-CCCT-TTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccC-eeCh-hhhcCCCCCCEEE
Confidence            346677777777777776543 567777777777777653 6677777777777776 233 3332 2356677777777


Q ss_pred             ecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCC
Q 015671          210 LRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLP  289 (403)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~  289 (403)
                      +++|.+....+..+..+++|+.|++++|......+                     ..+..+++|++|++++|.+.+..+
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~Ls~n~l~~~~~  150 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---------------------RVFDSLTKLTYLSLGYNELQSLPK  150 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---------------------TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH---------------------HHhCcCcCCCEEECCCCcCCccCH
Confidence            77776544444445667777777777654322211                     123444455555555544333322


Q ss_pred             ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChh-hhcCCCCCEEeccCCc
Q 015671          290 SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPES-IIQHFVLRYLLLSYSE  354 (403)
Q Consensus       290 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~c~  354 (403)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus       151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            3344455555555555444443333444555555555555555544432 3445555555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=7.7e-21  Score=174.29  Aligned_cols=216  Identities=15%  Similarity=0.060  Sum_probs=175.5

Q ss_pred             CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE
Q 015671          131 AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL  208 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  208 (403)
                      ++|++|++++|.++.++. .+ .+++|++|++++|.+...+. +..+++|++|++++|. +. .++      ..++|++|
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~-~l~------~~~~L~~L  104 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQ-ELL------VGPSIETL  104 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EE-EEE------ECTTCCEE
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cc-ccc------CCCCcCEE
Confidence            689999999999998863 34 79999999999999988765 8999999999999983 33 232      34889999


Q ss_pred             EecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhh-hCCCCCCEEecccCcC
Q 015671          209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSI-ESLLRLEYLDLSDCKR  284 (403)
Q Consensus       209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~-~~l~~L~~L~l~~~~~  284 (403)
                      ++++|.+.+..+.   .+++|+.|++++|......+..+.  ++|++|++++|.++.++ ..+ ..+++|++|++++|.+
T Consensus       105 ~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             ECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            9999886554433   478999999999776554443443  89999999999999664 344 5789999999999986


Q ss_pred             CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC-CcCCC
Q 015671          285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL-QSLPS  361 (403)
Q Consensus       285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~lp~  361 (403)
                      .+. +. ...+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.. ..+|.
T Consensus       182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          182 YDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             CEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             ccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            554 33 3358999999999988765 455688999999999999999999999999999999999999877 33433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=7.4e-22  Score=180.67  Aligned_cols=198  Identities=18%  Similarity=0.100  Sum_probs=129.8

Q ss_pred             CCCceEEEccCCCcc-cccccc--ccCCCCcEeecccccCccccCCCCCCCCCC-----CCCcEEEecCCCCCCccCccC
Q 015671          152 AEKLVLFEVPENDIE-QLWDCV--KHYSKLNQIIHAVCHRLIAKTPNPTLMPRL-----NKVVILNLRGSKSLKSLPSEI  223 (403)
Q Consensus       152 l~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~  223 (403)
                      +++|++|++++|.+. .+|..+  ..+++|++|++++|. +. .+|  ..+..+     ++|++|++++|.+.+..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~~~--~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~  169 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WA-TRD--AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV  169 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CS-SSS--SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Cc-chh--HHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence            556666666666665 244443  556666666666652 22 112  122222     566666666666555444556


Q ss_pred             CCCCCCCEEeecCCCCCCCC--cccc--c--CCCcEEEecCccCccc---Chh-hhCCCCCCEEecccCcCCCcCC-ccc
Q 015671          224 FNLEFLTKLDLSGCSKLKRL--PEIS--S--GNISWLFLTGTAIKEL---PSS-IESLLRLEYLDLSDCKRLKSLP-SSL  292 (403)
Q Consensus       224 ~~l~~L~~L~l~~~~~~~~~--~~~~--~--~~L~~L~l~~~~~~~l---~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~  292 (403)
                      +.+++|++|++++|...+..  +...  .  ++|++|++++|.++.+   +.. +..+++|+.|++++|.+.+..| ..+
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  249 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC  249 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence            66666666666665543321  1111  1  6666777777777633   322 3577899999999998877664 345


Q ss_pred             cCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCC
Q 015671          293 CKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ  357 (403)
Q Consensus       293 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  357 (403)
                      ..+++|+.|++++|.+. .+|..+.  ++|+.|++++|.++.+|. +..+++|++|++++|+..+
T Consensus       250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            66889999999998876 6776665  889999999999998876 8889999999999997653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=2.8e-19  Score=160.01  Aligned_cols=198  Identities=17%  Similarity=0.149  Sum_probs=139.9

Q ss_pred             CCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEE
Q 015671          153 EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKL  232 (403)
Q Consensus       153 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (403)
                      .+.++++++++.++.+|..+.  ++|++|++++|. +. .++ ...+.++++|++|++++|.+....+..+..+++|++|
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~-~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LS-SLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CS-CCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CC-eeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            356777888777777776443  567777777762 32 222 1246666777777777766443323334556666666


Q ss_pred             eecCCCCCCCCcccccCCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcc
Q 015671          233 DLSGCSKLKRLPEISSGNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR  311 (403)
Q Consensus       233 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  311 (403)
                      ++++                      |.++.+|. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus        91 ~l~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  148 (270)
T 2o6q_A           91 WVTD----------------------NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL  148 (270)
T ss_dssp             ECCS----------------------SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ECCC----------------------CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence            6665                      44444553 457889999999999998777777788999999999999988776


Q ss_pred             cCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhc
Q 015671          312 LPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVE  380 (403)
Q Consensus       312 ~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~  380 (403)
                      .+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|... .+|...  +..+++|+.+....+
T Consensus       149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA--FDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTT--TTTCTTCCEEECCSS
T ss_pred             CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHH--hccccCCCEEEecCC
Confidence            66678999999999999999997775 4788999999999999654 455421  244566665443333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=8e-20  Score=160.49  Aligned_cols=196  Identities=15%  Similarity=0.175  Sum_probs=114.8

Q ss_pred             CceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC-CCCCCccCccCCCCCCCCE
Q 015671          154 KLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG-SKSLKSLPSEIFNLEFLTK  231 (403)
Q Consensus       154 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~  231 (403)
                      +|++|++++|.++.++. .+..+++|++|++++|..+. .++. ..+.++++|++|++++ |.+....+..+..+++|+.
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECT-TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCH-hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            44444444444444432 34444444444444442122 2221 1334444445555544 3322222233444455555


Q ss_pred             EeecCCCCCCCCccccc-CCCc---EEEecCc-cCcccCh-hhhCCCCCC-EEecccCcCCCcCCccccCCCCCcEEeec
Q 015671          232 LDLSGCSKLKRLPEISS-GNIS---WLFLTGT-AIKELPS-SIESLLRLE-YLDLSDCKRLKSLPSSLCKLKSLGVLNLY  304 (403)
Q Consensus       232 L~l~~~~~~~~~~~~~~-~~L~---~L~l~~~-~~~~l~~-~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  304 (403)
                      |++++|.. ..+|.+.. .+|+   .|++++| .++.+|. .+..+++|+ .|++++|.+. .+|......++|+.|+++
T Consensus       110 L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          110 LGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEEECC-CSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             EeCCCCCC-ccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            55554332 22333211 3444   5555556 6666664 367888999 9999988865 566554444889999999


Q ss_pred             CCC-CCcccCcccCCC-CCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcC
Q 015671          305 GCS-NLQRLPECLGQL-SSPITLGLTETNIERIPESIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       305 ~~~-~~~~~~~~l~~l-~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~  355 (403)
                      +|. +.+..+..+.++ ++|+.|++++|.++.+|..  .+++|+.|++++|..
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence            985 655556678888 9999999999999988865  788999999988753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.8e-21  Score=178.01  Aligned_cols=239  Identities=17%  Similarity=0.087  Sum_probs=180.9

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccc--cccccc-------cCCCCcEeecccccCccccCCCCCCCCC
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQ--LWDCVK-------HYSKLNQIIHAVCHRLIAKTPNPTLMPR  201 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~--l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~  201 (403)
                      .+|++|+++++.+ .+|..+. ..|++|++++|.+..  ++..+.       .+++|++|++++|. +.+.+|....+..
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~  119 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPPPLLEAT  119 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCCCSSSCC
T ss_pred             CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHHHHHHhc
Confidence            5577788888888 7776442 128888999988864  455544       79999999999994 3324554212388


Q ss_pred             CCCCcEEEecCCCCCCccCccCCCC-----CCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcc---cChhh--h
Q 015671          202 LNKVVILNLRGSKSLKSLPSEIFNL-----EFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKE---LPSSI--E  269 (403)
Q Consensus       202 l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~---l~~~~--~  269 (403)
                      +++|++|++++|.+.+. |..++.+     ++|++|++++|...+..+..+.  ++|++|++++|.+..   ++..+  .
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            99999999999987665 7666666     9999999999876655545544  999999999998753   34445  8


Q ss_pred             CCCCCCEEecccCcCCC--cCC-ccccCCCCCcEEeecCCCCCcccC-cccCCCCCCCEEEccCCCCcccChhhhcCCCC
Q 015671          270 SLLRLEYLDLSDCKRLK--SLP-SSLCKLKSLGVLNLYGCSNLQRLP-ECLGQLSSPITLGLTETNIERIPESIIQHFVL  345 (403)
Q Consensus       270 ~l~~L~~L~l~~~~~~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L  345 (403)
                      .+++|+.|++++|.+.+  .++ ..+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.++.+|..+.  ++|
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L  276 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKL  276 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEE
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCc
Confidence            89999999999998763  223 234578999999999999888764 456678999999999999999998776  899


Q ss_pred             CEEeccCCcCCCcCCCCeEeccCCCCCCCchhhhc
Q 015671          346 RYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVE  380 (403)
Q Consensus       346 ~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~~~~~  380 (403)
                      ++|++++|+..+ +|.    +..+++|+.+....+
T Consensus       277 ~~L~Ls~N~l~~-~p~----~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          277 SVLDLSYNRLDR-NPS----PDELPQVGNLSLKGN  306 (312)
T ss_dssp             EEEECCSSCCCS-CCC----TTTSCEEEEEECTTC
T ss_pred             eEEECCCCCCCC-Chh----HhhCCCCCEEeccCC
Confidence            999999997654 454    456666666444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=1.4e-19  Score=165.18  Aligned_cols=190  Identities=19%  Similarity=0.250  Sum_probs=87.1

Q ss_pred             eeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671          133 VKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG  212 (403)
Q Consensus       133 L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (403)
                      |++|+++++.++.+|....+++|++|++++|.+..++. +..+++|++|++++|     .+..+..+..+++|++|++++
T Consensus        43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-----~l~~~~~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-----PLKNVSAIAGLQSIKTLDLTS  116 (308)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-----CCSCCGGGTTCTTCCEEECTT
T ss_pred             cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-----cCCCchhhcCCCCCCEEECCC
Confidence            33444444444444322234445555555554444443 444555555555554     111122344445555555555


Q ss_pred             CCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCcc
Q 015671          213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSS  291 (403)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~  291 (403)
                      |.+.. ++. +..+++|+.|++++|.. ..++.+.. ++|+.|++++|.++.++. +..+++|+.|++++|.+.+ ++. 
T Consensus       117 n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-  190 (308)
T 1h6u_A          117 TQITD-VTP-LAGLSNLQVLYLDLNQI-TNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-ISP-  190 (308)
T ss_dssp             SCCCC-CGG-GTTCTTCCEEECCSSCC-CCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-
T ss_pred             CCCCC-chh-hcCCCCCCEEECCCCcc-CcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc-Chh-
Confidence            44322 222 44555555555555332 12222111 344444444444444443 4555566666666555433 222 


Q ss_pred             ccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC
Q 015671          292 LCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP  336 (403)
Q Consensus       292 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~  336 (403)
                      +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.++..|
T Consensus       191 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred             hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence            4455566666666555444332  455566666666665555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=1.5e-19  Score=162.02  Aligned_cols=205  Identities=18%  Similarity=0.159  Sum_probs=141.3

Q ss_pred             hcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccC
Q 015671           98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHY  175 (403)
Q Consensus        98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l  175 (403)
                      +..+++|+.|+++++.+.        ....+.. ++|++|++++|.+..++....+++|++|++++|.+..++. .+..+
T Consensus        37 ~~~l~~L~~L~l~~~~i~--------~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  108 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK--------SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKL  108 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC--------CCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             cccccceeeeeeCCCCcc--------cccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCC
Confidence            456899999999998763        2234555 9999999999999988755589999999999999998865 57899


Q ss_pred             CCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEE
Q 015671          176 SKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF  255 (403)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  255 (403)
                      ++|++|++++|. +. .++ ...+.++++|++|++++|.+.+..+..++.+++|+.|++++|.... ++.          
T Consensus       109 ~~L~~L~L~~n~-l~-~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~----------  174 (272)
T 3rfs_A          109 TNLKELVLVENQ-LQ-SLP-DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPE----------  174 (272)
T ss_dssp             TTCCEEECTTSC-CC-CCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT----------
T ss_pred             cCCCEEECCCCc-CC-ccC-HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCH----------
Confidence            999999999993 33 333 2357889999999999998765555667889999999999865432 221          


Q ss_pred             ecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-c
Q 015671          256 LTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-R  334 (403)
Q Consensus       256 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~  334 (403)
                                ..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+       .+++|+.|++..|.++ .
T Consensus       175 ----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~  237 (272)
T 3rfs_A          175 ----------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV  237 (272)
T ss_dssp             ----------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGG
T ss_pred             ----------HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCc
Confidence                      123445555555555555544444444555555555555554332       2334555555555554 4


Q ss_pred             cChhhhc
Q 015671          335 IPESIIQ  341 (403)
Q Consensus       335 l~~~~~~  341 (403)
                      +|.+++.
T Consensus       238 ip~~~~~  244 (272)
T 3rfs_A          238 VRNSAGS  244 (272)
T ss_dssp             BBCTTSC
T ss_pred             ccCcccc
Confidence            4544443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=3.2e-19  Score=162.71  Aligned_cols=191  Identities=17%  Similarity=0.244  Sum_probs=161.7

Q ss_pred             CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671          151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT  230 (403)
Q Consensus       151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  230 (403)
                      .+++|++|+++++.+..++ .+..+++|++|++++| .+. .++   .+..+++|++|++++|.+. .++ .+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~-~~~---~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QIT-DLA---PLKNLTKITELELSGNPLK-NVS-AIAGLQSIK  110 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCC-CCG---GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCC
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCC-CCh---hHccCCCCCEEEccCCcCC-Cch-hhcCCCCCC
Confidence            5789999999999999886 6889999999999999 333 333   3888999999999999854 444 588999999


Q ss_pred             EEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671          231 KLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL  309 (403)
Q Consensus       231 ~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  309 (403)
                      .|++++|.. ..++.... ++|++|++++|.++.++. +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+.
T Consensus       111 ~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          111 TLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             EEECTTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCCC-CCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence            999999764 44555444 999999999999998876 8899999999999998654 444 889999999999998876


Q ss_pred             cccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671          310 QRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       310 ~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                      +..+  +..+++|+.|++++|.++.++. +..+++|+.|++++|+..
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred             cChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence            6443  7889999999999999998874 889999999999999764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=3.2e-20  Score=169.59  Aligned_cols=200  Identities=18%  Similarity=0.074  Sum_probs=140.9

Q ss_pred             CCCceEEEccCCCccc-ccccc--ccCCCCcEeecccccCccccCCCC--CCCCCCCCCcEEEecCCCCCCccCccCCCC
Q 015671          152 AEKLVLFEVPENDIEQ-LWDCV--KHYSKLNQIIHAVCHRLIAKTPNP--TLMPRLNKVVILNLRGSKSLKSLPSEIFNL  226 (403)
Q Consensus       152 l~~L~~L~l~~~~~~~-l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  226 (403)
                      +++|++|++++|.+.. .|..+  ..+++|++|++++|.... ..+..  ..+..+++|++|++++|.+....+..++.+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            4456777777776664 34444  667777777777763211 22211  122356777777777777655555667777


Q ss_pred             CCCCEEeecCCCCCCC--Ccc-c---ccCCCcEEEecCccCcccChh----hhCCCCCCEEecccCcCCCcCCccccCC-
Q 015671          227 EFLTKLDLSGCSKLKR--LPE-I---SSGNISWLFLTGTAIKELPSS----IESLLRLEYLDLSDCKRLKSLPSSLCKL-  295 (403)
Q Consensus       227 ~~L~~L~l~~~~~~~~--~~~-~---~~~~L~~L~l~~~~~~~l~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~l-  295 (403)
                      ++|++|++++|...+.  ++. .   ..++|++|++++|.++.++..    +..+++|++|++++|.+.+..|..+..+ 
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            7777777777654331  111 1   116777888888888755542    4788999999999999888777776666 


Q ss_pred             --CCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671          296 --KSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       296 --~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                        ++|+.|++++|.+. .+|..+.  ++|+.|++++|.++.+|. +..+++|+.|++++|+..
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence              69999999998877 6676663  899999999999998875 688899999999999765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=9.1e-19  Score=157.21  Aligned_cols=199  Identities=19%  Similarity=0.133  Sum_probs=120.7

Q ss_pred             CCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          131 AEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      ++|++|++++|.++.++. .+ .+++|++|++++|.+..++. .+..+++|++|++++|. +. .++ ...+.++++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~-~~~-~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ-SLA-LGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CC-EEC-TTTTTTCTTCCE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cC-ccC-hhhhcCCccccE
Confidence            455666666666555543 23 45666666666666655543 45566666666666652 22 111 124555666666


Q ss_pred             EEecCCCCCCccCccCCCCCCCCEEeecCCCCCC-CCccccc--CCCcEEEecCccCcccC-hhhhCCCCCC----EEec
Q 015671          208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLK-RLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLE----YLDL  279 (403)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~----~L~l  279 (403)
                      |++++|.+....+..++.+++|++|++++|.... .+|..+.  ++|++|++++|.++.++ ..+..+++|+    .|++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            6666665444434345566666666666654433 1344333  66666666667776555 3444444554    7888


Q ss_pred             ccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          280 SDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       280 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      ++|.+.+.. .......+|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       185 s~n~l~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          185 SLNPMNFIQ-PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CSSCCCEEC-TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCCcccccC-ccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            888865443 33344558999999988877665666788899999999988877

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=3.7e-18  Score=154.20  Aligned_cols=198  Identities=19%  Similarity=0.163  Sum_probs=165.6

Q ss_pred             CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671          151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT  230 (403)
Q Consensus       151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  230 (403)
                      +++++++++++++.++.+|..+.  ++++.|++++|. +. .++ ...+.++++|++|++++|.+. .++. .+.+++|+
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~-~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~   80 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LY-TFS-LATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLG   80 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CS-EEE-GGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCC
T ss_pred             ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CC-ccC-HHHhhcCCCCCEEECCCCccC-cccC-CCCCCcCC
Confidence            57789999999999999987664  799999999983 33 222 236788999999999998854 4444 37899999


Q ss_pred             EEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCC
Q 015671          231 KLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS  307 (403)
Q Consensus       231 ~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  307 (403)
                      .|++++|. ++.+|....  ++|++|++++|.++.+| ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus        81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            99999965 456666544  89999999999999887 457899999999999999776666667889999999999998


Q ss_pred             CCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671          308 NLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       308 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                      +....+..+..+++|+.|++++|.++.+|..+...++|+.|++++|+..
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            8766666678899999999999999999999999999999999999743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=2.3e-21  Score=182.85  Aligned_cols=240  Identities=14%  Similarity=0.103  Sum_probs=147.6

Q ss_pred             hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC------------CCCCCceEEEcc
Q 015671           95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN------------LSAEKLVLFEVP  161 (403)
Q Consensus        95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~------------~~l~~L~~L~l~  161 (403)
                      ...+..+++|++|++++|.+.+..+  ..+...+.. ++|++|++++|.+..+...            ..+++|++|+++
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHH--HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            4567778899999999887742211  123344555 8888888888766544321            145677777777


Q ss_pred             CCCccc-----cccccccCCCCcEeecccccCccccCCC--CCCCCCC---------CCCcEEEecCCCCC-CccC---c
Q 015671          162 ENDIEQ-----LWDCVKHYSKLNQIIHAVCHRLIAKTPN--PTLMPRL---------NKVVILNLRGSKSL-KSLP---S  221 (403)
Q Consensus       162 ~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~  221 (403)
                      +|.+..     ++..+..+++|++|++++|.. ....+.  ...+..+         ++|++|++++|.+. ..++   .
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            776664     455666677777777777632 100000  0011122         55666666665543 2222   2


Q ss_pred             cCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCc-----cc-ChhhhCCCCCCEEecccCcCC----CcCCcc
Q 015671          222 EIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIK-----EL-PSSIESLLRLEYLDLSDCKRL----KSLPSS  291 (403)
Q Consensus       222 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l-~~~~~~l~~L~~L~l~~~~~~----~~~~~~  291 (403)
                      .+..+++|++|++++|                      .++     .+ +..+..+++|+.|++++|.+.    ..+|..
T Consensus       182 ~l~~~~~L~~L~L~~n----------------------~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~  239 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQN----------------------GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  239 (386)
T ss_dssp             HHHHCTTCCEEECCSS----------------------CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             HHHhCCCcCEEECcCC----------------------CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence            3344555566655554                      443     12 225667778888888887764    556666


Q ss_pred             ccCCCCCcEEeecCCCCCcc----cCccc--CCCCCCCEEEccCCCCcc-----cChhh-hcCCCCCEEeccCCcCCCcC
Q 015671          292 LCKLKSLGVLNLYGCSNLQR----LPECL--GQLSSPITLGLTETNIER-----IPESI-IQHFVLRYLLLSYSERLQSL  359 (403)
Q Consensus       292 ~~~l~~L~~L~l~~~~~~~~----~~~~l--~~l~~L~~L~l~~~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l~~l  359 (403)
                      +..+++|+.|++++|.+.+.    ++..+  ..+++|+.|++++|.++.     +|..+ ..+++|++|++++|+..+..
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            77778888888888776654    45555  337788888888888875     77666 55788888888888765444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=2e-18  Score=160.42  Aligned_cols=234  Identities=19%  Similarity=0.193  Sum_probs=145.4

Q ss_pred             cEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCccc-cc-cccccCCCCcE
Q 015671          105 RFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQ-LW-DCVKHYSKLNQ  180 (403)
Q Consensus       105 r~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~  180 (403)
                      ++++.+++.+       ..+|..+ ..++++|+|++|.++.+|.. + ++++|++|+|++|.+.. ++ ..+.++++|+.
T Consensus        12 ~~v~C~~~~L-------t~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X           12 RVFLCQESKV-------TEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             TEEEEESTTC-------CSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred             CEEEecCCCC-------CccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence            4555655554       2344433 25677777777777777653 3 57777777777777643 44 35667777666


Q ss_pred             eecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc----CCCcEEEe
Q 015671          181 IIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS----GNISWLFL  256 (403)
Q Consensus       181 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~L~~L~l  256 (403)
                      +...++..+. .++ ...+..+++|++|++++|.+....+..+....++..|++.++..+..++....    ..++.|++
T Consensus        84 ~l~~~~N~l~-~l~-~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           84 IRIEKANNLL-YIN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             EEEEEETTCC-EEC-TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             hhcccCCccc-ccC-chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            5444433444 333 23566777777777777765443333344555667777776666666554432    45677777


Q ss_pred             cCccCcccChhhhCCCCCCEEecccCcCCCcCCc-cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCC-CCcc
Q 015671          257 TGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET-NIER  334 (403)
Q Consensus       257 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~  334 (403)
                      ++|.++.++..+....+|+.+.+.++...+.+|. .+..+++|+.|++++|.+.. +|.  ..+.+|+.|.+.++ .++.
T Consensus       162 ~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKK  238 (350)
T ss_dssp             CSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCC
T ss_pred             ccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCc
Confidence            7777777776666666777777776555666665 35677777777777765443 332  23556666665444 4566


Q ss_pred             cChhhhcCCCCCEEeccC
Q 015671          335 IPESIIQHFVLRYLLLSY  352 (403)
Q Consensus       335 l~~~~~~~~~L~~L~l~~  352 (403)
                      +| .+..+++|+.+++.+
T Consensus       239 lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          239 LP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             CC-CTTTCCSCCEEECSC
T ss_pred             CC-CchhCcChhhCcCCC
Confidence            76 366777777777754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.78  E-value=1.7e-17  Score=166.30  Aligned_cols=247  Identities=18%  Similarity=0.174  Sum_probs=192.7

Q ss_pred             hcCCCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccc---ccccccc
Q 015671           98 FTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQ---LWDCVKH  174 (403)
Q Consensus        98 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~---l~~~~~~  174 (403)
                      +.....|+.|++.++.+.+       + .......|+.+.+.++.....+....+++|+.++++.|.+..   .+.....
T Consensus       324 ~~~~~~L~~L~l~~~~~~~-------~-~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~  395 (635)
T 4g8a_A          324 FSYNFGWQHLELVNCKFGQ-------F-PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG  395 (635)
T ss_dssp             GGSCCCCSEEEEESCEESS-------C-CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred             cccchhhhhhhcccccccC-------c-CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhh
Confidence            4556677777777765431       1 111126788888888887776666678999999999998764   3456677


Q ss_pred             CCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc--CCC
Q 015671          175 YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS--GNI  251 (403)
Q Consensus       175 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L  251 (403)
                      +.+|+++++..+...  ..  ...+..+++|+.+++..+......+ ..+..+++++.++++.|......+....  +.+
T Consensus       396 ~~~L~~L~~~~~~~~--~~--~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L  471 (635)
T 4g8a_A          396 TISLKYLDLSFNGVI--TM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  471 (635)
T ss_dssp             CSCCCEEECCSCSEE--EE--CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             hhhhhhhhccccccc--cc--cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence            889999999887422  22  2356778999999998876555444 4467889999999999776555555444  899


Q ss_pred             cEEEecCccCc--ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccC
Q 015671          252 SWLFLTGTAIK--ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE  329 (403)
Q Consensus       252 ~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  329 (403)
                      +.|++++|.+.  ..|..+..+++|+.|++++|.+.+..|..+.++++|++|+|++|.+.+..+..+.++++|+.|++++
T Consensus       472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  551 (635)
T 4g8a_A          472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  551 (635)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred             hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence            99999988754  3667788999999999999998888888899999999999999998888888899999999999999


Q ss_pred             CCCccc-ChhhhcC-CCCCEEeccCCcCC
Q 015671          330 TNIERI-PESIIQH-FVLRYLLLSYSERL  356 (403)
Q Consensus       330 ~~l~~l-~~~~~~~-~~L~~L~l~~c~~l  356 (403)
                      |.++.+ |..+..+ ++|+.|++++|+..
T Consensus       552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          552 NHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             SCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            999955 5567777 68999999999754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=8.1e-18  Score=156.29  Aligned_cols=221  Identities=19%  Similarity=0.226  Sum_probs=173.7

Q ss_pred             eEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE-Eec
Q 015671          134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL-NLR  211 (403)
Q Consensus       134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L-~l~  211 (403)
                      +.++.+++.++++|..+ .+++++|++++|+++.+|. .+.++++|++|++++|.... .++ ...+.++++++++ .+.
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~-~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIE-ADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-EEC-TTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-ccC-hhHhhcchhhhhhhccc
Confidence            46778889999999876 4689999999999999985 68999999999999995433 444 3467788888765 455


Q ss_pred             CCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecC-ccCcccChh-hhCC-CCCCEEecccCcCC
Q 015671          212 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTG-TAIKELPSS-IESL-LRLEYLDLSDCKRL  285 (403)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~-~~~~~l~~~-~~~l-~~L~~L~l~~~~~~  285 (403)
                      .|.+....|..+..+++|+.|++++|.. ...+....   .++..+.+.+ +.++.++.. +..+ ..++.|++++|.+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            5665544567788999999999999654 44444433   6677788764 677777743 3444 57899999999865


Q ss_pred             CcCCccccCCCCCcEEeecCCCCCcccCc-ccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          286 KSLPSSLCKLKSLGVLNLYGCSNLQRLPE-CLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       286 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                       .++.......+|+.+++.+++..+.+|. .|.++++|+.|++++|+++.+|.  ..+.+|+.|.+.+|..++.+|.
T Consensus       168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCC
T ss_pred             -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCC
Confidence             5666666678999999998777777774 57899999999999999999986  3478999999999999999996

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=2.9e-18  Score=150.51  Aligned_cols=192  Identities=16%  Similarity=0.119  Sum_probs=104.4

Q ss_pred             CeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCC-cccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          132 EVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPEND-IEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       132 ~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      +|++|+++++.++.+|. .+ .+++|++|++++|. ++.++. .+..+++|++|++++|..+. .++ ...+.++++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~-~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YID-PDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EEC-TTSEECCTTCCE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcC-HHHhCCCCCCCE
Confidence            45555555555554443 22 45555555555554 444432 44555555555555421222 222 123444555555


Q ss_pred             EEecCCCCCCccCccCCCCCCCC---EEeecCCCCCCCCccccc---CCCc-EEEecCccCcccChhhhCCCCCCEEecc
Q 015671          208 LNLRGSKSLKSLPSEIFNLEFLT---KLDLSGCSKLKRLPEISS---GNIS-WLFLTGTAIKELPSSIESLLRLEYLDLS  280 (403)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~---~~L~-~L~l~~~~~~~l~~~~~~l~~L~~L~l~  280 (403)
                      |++++|.+.+ +|. ++.+++|+   .|++++|..++.++....   ++|+ .|++++|.++.+|......++|+.|+++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence            5555554322 443 44555555   555555433333333211   5555 6666666666666554444778888888


Q ss_pred             cCc-CCCcCCccccCC-CCCcEEeecCCCCCcccCcccCCCCCCCEEEccCC
Q 015671          281 DCK-RLKSLPSSLCKL-KSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET  330 (403)
Q Consensus       281 ~~~-~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  330 (403)
                      +|+ +.+..+..+..+ ++|+.|++++|.+.+ +|..  .+++|+.|.++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            885 444444556777 888888888876653 4433  5778888887765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=2.9e-19  Score=165.13  Aligned_cols=226  Identities=19%  Similarity=0.181  Sum_probs=157.8

Q ss_pred             CCeeEEEecCCCCCCCCC-CCCCCCceEEEccCCCccc--cccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          131 AEVKYLHWHGYPLKSFPS-NLSAEKLVLFEVPENDIEQ--LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~-~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      ..++.|+++++.+...+. .+.+++|++|++++|.+..  ++..+..+++|++|++++|. +.+..+  ..+..+++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~--~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIV--NTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHH--HHHTTCTTCSE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHH--HHHhcCCCCCE
Confidence            567777777776655533 3378888999998888764  67778888999999998883 221222  24566888899


Q ss_pred             EEecCCC-CCC-ccCccCCCCCCCCEEeecCCCCCCC--Cccccc--C-CCcEEEecCcc--C--cccChhhhCCCCCCE
Q 015671          208 LNLRGSK-SLK-SLPSEIFNLEFLTKLDLSGCSKLKR--LPEISS--G-NISWLFLTGTA--I--KELPSSIESLLRLEY  276 (403)
Q Consensus       208 L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~--~-~L~~L~l~~~~--~--~~l~~~~~~l~~L~~  276 (403)
                      |++++|. +.. .++..+..+++|++|++++|..++.  ++....  + +|++|++++|.  +  ..++..+..+++|+.
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~  226 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH  226 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence            9999884 333 3566567788999999998844442  333333  6 88888888884  4  366777788999999


Q ss_pred             EecccCc-CCCcCCccccCCCCCcEEeecCCCC-CcccCcccCCCCCCCEEEccCCCCcccChhhhcC-CCCCEEeccCC
Q 015671          277 LDLSDCK-RLKSLPSSLCKLKSLGVLNLYGCSN-LQRLPECLGQLSSPITLGLTETNIERIPESIIQH-FVLRYLLLSYS  353 (403)
Q Consensus       277 L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~-~~L~~L~l~~c  353 (403)
                      |++++|. +....+..+.++++|+.|++++|.. .......+..+++|+.|++++| ++.-  .+..+ ..|+.|++++|
T Consensus       227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n  303 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCS  303 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCC
T ss_pred             EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecc
Confidence            9999998 5556677788889999999999852 2222235778899999999998 4411  11222 23555667888


Q ss_pred             cCCCcCCCC
Q 015671          354 ERLQSLPSP  362 (403)
Q Consensus       354 ~~l~~lp~~  362 (403)
                      ...+..|..
T Consensus       304 ~l~~~~~~~  312 (336)
T 2ast_B          304 HFTTIARPT  312 (336)
T ss_dssp             CSCCTTCSS
T ss_pred             cCccccCCc
Confidence            777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=9.2e-21  Score=182.92  Aligned_cols=251  Identities=16%  Similarity=0.112  Sum_probs=138.0

Q ss_pred             CCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCC-----CCC-C-CCCCceEEEccCCCccc-----cc
Q 015671          103 KLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSF-----PSN-L-SAEKLVLFEVPENDIEQ-----LW  169 (403)
Q Consensus       103 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l-----p~~-~-~l~~L~~L~l~~~~~~~-----l~  169 (403)
                      +|++|++++|.+....  ...++..+.. ++|++|++++|.+...     ... . ..++|++|++++|.+..     ++
T Consensus        86 ~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAG--CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             CCCEEECTTSCCBGGG--HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             ceeEEEccCCCCCHHH--HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence            4666666665542100  0122334444 5666666666554321     100 0 23456666666665553     23


Q ss_pred             cccccCCCCcEeecccccCccccCCC-C-CCC-CCCCCCcEEEecCCCCCCc----cCccCCCCCCCCEEeecCCCCCCC
Q 015671          170 DCVKHYSKLNQIIHAVCHRLIAKTPN-P-TLM-PRLNKVVILNLRGSKSLKS----LPSEIFNLEFLTKLDLSGCSKLKR  242 (403)
Q Consensus       170 ~~~~~l~~L~~L~l~~~~~~~~~~~~-~-~~~-~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~  242 (403)
                      ..+..+++|++|++++|. +....+. + ..+ ...++|++|++++|.+...    ++..+..+++|++|++++|.....
T Consensus       164 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            445556666666666663 1100000 0 000 0234667777777665442    455555667777777777642221


Q ss_pred             C-----cccc--cCCCcEEEecCccCcc-----cChhhhCCCCCCEEecccCcCCCcCCcccc-----CCCCCcEEeecC
Q 015671          243 L-----PEIS--SGNISWLFLTGTAIKE-----LPSSIESLLRLEYLDLSDCKRLKSLPSSLC-----KLKSLGVLNLYG  305 (403)
Q Consensus       243 ~-----~~~~--~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~  305 (403)
                      .     +...  .++|++|++++|.++.     ++..+..+++|+.|++++|.+....+..+.     ..++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            0     1111  1677777777777764     566666777788888877765433222221     235788888888


Q ss_pred             CCCCcc----cCcccCCCCCCCEEEccCCCCccc-Chhhh----c-CCCCCEEeccCCcCC
Q 015671          306 CSNLQR----LPECLGQLSSPITLGLTETNIERI-PESII----Q-HFVLRYLLLSYSERL  356 (403)
Q Consensus       306 ~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~----~-~~~L~~L~l~~c~~l  356 (403)
                      |.+.+.    ++..+..+++|+.|++++|.++.. +..+.    . .++|++|++++|...
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            776654    455566678888888888877732 22222    1 568888888888655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=1.2e-19  Score=167.74  Aligned_cols=216  Identities=17%  Similarity=0.156  Sum_probs=170.4

Q ss_pred             eeEEEecCCCCCCCCCCC-CC--CCceEEEccCCCccccccccccCCCCcEeecccccCcccc-CCCCCCCCCCCCCcEE
Q 015671          133 VKYLHWHGYPLKSFPSNL-SA--EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAK-TPNPTLMPRLNKVVIL  208 (403)
Q Consensus       133 L~~L~l~~~~~~~lp~~~-~l--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~L~~L  208 (403)
                      ++.++++++.+.  |..+ .+  .+++.|+++++.+...+..+..+++|++|++++|. +.+. ++  ..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~--~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLH--GILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHH--HHHTTBCCCSEE
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHH--HHHhhCCCCCEE
Confidence            555666655443  2222 34  78999999999999877777889999999999984 3211 33  246778999999


Q ss_pred             EecCCCCCCccCccCCCCCCCCEEeecCCCCCCC--Cccccc--CCCcEEEecCc-cCcc--cChhhhCCC-CCCEEecc
Q 015671          209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKR--LPEISS--GNISWLFLTGT-AIKE--LPSSIESLL-RLEYLDLS  280 (403)
Q Consensus       209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~--~~L~~L~l~~~-~~~~--l~~~~~~l~-~L~~L~l~  280 (403)
                      ++++|.+....+..++.+++|++|++++|..++.  ++....  ++|++|++++| .++.  ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            9999987777777788899999999999855553  444333  99999999999 8884  677788999 99999999


Q ss_pred             cCc--CC-CcCCccccCCCCCcEEeecCCC-CCcccCcccCCCCCCCEEEccCCC-Cc-ccChhhhcCCCCCEEeccCC
Q 015671          281 DCK--RL-KSLPSSLCKLKSLGVLNLYGCS-NLQRLPECLGQLSSPITLGLTETN-IE-RIPESIIQHFVLRYLLLSYS  353 (403)
Q Consensus       281 ~~~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-l~-~l~~~~~~~~~L~~L~l~~c  353 (403)
                      +|.  +. +.++..+.++++|+.|++++|. +.+..+..+..+++|+.|++++|. +. .....+..+++|+.|++++|
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            994  33 4566677789999999999998 556677788999999999999995 43 22235788999999999999

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=3.6e-17  Score=144.60  Aligned_cols=176  Identities=20%  Similarity=0.209  Sum_probs=113.0

Q ss_pred             CeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671          132 EVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL  210 (403)
Q Consensus       132 ~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  210 (403)
                      ..+.++++++.++.+|..+. .++++|++++|.+..++ ..+..+++|++|++++| .+. .++ ...+.++++|++|++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~-~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQ-TLS-AGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCC-CCC-TTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCC-ccC-HhHhccCCcCCEEEC
Confidence            45677777777777776554 56777778777777654 35667777777777776 222 222 224566667777777


Q ss_pred             cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCCcCC
Q 015671          211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLKSLP  289 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~  289 (403)
                      ++|.+....+..+..+++|++|++++|                      .++.++.. +..+++|+.|++++|.+.+..+
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N----------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGN----------------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSS----------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCC----------------------cCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            776655444444556666666666654                      34444433 4566777777777776554444


Q ss_pred             ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          290 SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       290 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            45667777777777777766655556677777777777777765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=1.8e-17  Score=162.40  Aligned_cols=186  Identities=23%  Similarity=0.274  Sum_probs=132.2

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL  210 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  210 (403)
                      .+|+.|+++++.++.+|..+ .++|++|++++|.++.+|   ..+++|++|++++| .++ .+|.   +.+  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~-~ip~---l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLS-TLPE---LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCS-CCCC---CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCC-Ccch---hhc--CCCEEEC
Confidence            48999999999999998766 378999999999999888   56789999999998 444 3543   433  8899999


Q ss_pred             cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc
Q 015671          211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~  290 (403)
                      ++|.+.+ +|.   .+++|+.|++++|... .+|. ..++|+.|++++|.++.+|. +.  ++|+.|++++|.+. .+|.
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~  197 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLT-MLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA  197 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccC-cCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh
Confidence            9987554 666   5788888888886543 3555 33677777777777777776 44  77777777777654 5555


Q ss_pred             cccCCCCC-------cEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhc
Q 015671          291 SLCKLKSL-------GVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQ  341 (403)
Q Consensus       291 ~~~~l~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~  341 (403)
                       +..  +|       +.|++++|.+. .+|..+..+++|+.|++++|.++ ..|..+..
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             -CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             -HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence             433  55       77777776554 45666666777777777777776 45554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=1.7e-20  Score=181.05  Aligned_cols=276  Identities=18%  Similarity=0.138  Sum_probs=192.9

Q ss_pred             ceeEEEecCCCcceee--cChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCC-C-CCeeEEEecCCCCCCC-----C
Q 015671           77 KIEGICLDMSKVKEFR--LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLKSF-----P  147 (403)
Q Consensus        77 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~-~~L~~L~l~~~~~~~l-----p  147 (403)
                      +++.+.+....+....  ..+..|..+++|++|++++|.+.+..+  ..+...+. . .+|++|++++|.++..     +
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL--QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH--HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH--HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence            4666655444333221  236788999999999999998742111  11222222 2 6899999999987652     3


Q ss_pred             CCC-CCCCceEEEccCCCccccc-ccc----c-cCCCCcEeecccccCccccCC---CCCCCCCCCCCcEEEecCCCCCC
Q 015671          148 SNL-SAEKLVLFEVPENDIEQLW-DCV----K-HYSKLNQIIHAVCHRLIAKTP---NPTLMPRLNKVVILNLRGSKSLK  217 (403)
Q Consensus       148 ~~~-~l~~L~~L~l~~~~~~~l~-~~~----~-~l~~L~~L~l~~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~  217 (403)
                      ..+ .+++|++|++++|.+.... ..+    . ..++|++|++++|. +. ...   -...+..+++|++|++++|.+..
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VT-SDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CB-TTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-Cc-HHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            333 4689999999999987431 222    2 36799999999993 22 110   01235567899999999987543


Q ss_pred             cc-----CccCCCCCCCCEEeecCCCCCCC----Cccccc--CCCcEEEecCccCccc-----Chhhh-CCCCCCEEecc
Q 015671          218 SL-----PSEIFNLEFLTKLDLSGCSKLKR----LPEISS--GNISWLFLTGTAIKEL-----PSSIE-SLLRLEYLDLS  280 (403)
Q Consensus       218 ~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~--~~L~~L~l~~~~~~~l-----~~~~~-~l~~L~~L~l~  280 (403)
                      ..     +.....+++|+.|++++|.....    ++....  ++|++|++++|.++..     ...+. ..++|+.|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            21     22234689999999999854332    333332  8999999999998732     22222 33699999999


Q ss_pred             cCcCCCc----CCccccCCCCCcEEeecCCCCCcccCccc----CC-CCCCCEEEccCCCCc-----ccChhhhcCCCCC
Q 015671          281 DCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQRLPECL----GQ-LSSPITLGLTETNIE-----RIPESIIQHFVLR  346 (403)
Q Consensus       281 ~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~l~-----~l~~~~~~~~~L~  346 (403)
                      +|.+...    ++..+..+++|+.|++++|.+.+..+..+    .. .++|+.|++++|.++     .++..+..+++|+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            9997654    45667778999999999998765544333    22 779999999999998     6788888999999


Q ss_pred             EEeccCCcCC
Q 015671          347 YLLLSYSERL  356 (403)
Q Consensus       347 ~L~l~~c~~l  356 (403)
                      +|++++|+..
T Consensus       402 ~L~l~~N~i~  411 (461)
T 1z7x_W          402 ELDLSNNCLG  411 (461)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCCCC
Confidence            9999999754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=9.9e-17  Score=141.77  Aligned_cols=179  Identities=16%  Similarity=0.124  Sum_probs=135.7

Q ss_pred             CCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEE
Q 015671          153 EKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKL  232 (403)
Q Consensus       153 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (403)
                      ...++++++++.+..+|..+.  ++++.|++++|. +. .++ ...+.++++|++|++++|.+.+..+..+..+++|++|
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~-~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LA-TLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CC-CCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC-cC-ccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence            356678888888887776554  577788887772 22 222 1346677777777777777665555556667777777


Q ss_pred             eecCCCCCCCCcccccCCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcc
Q 015671          233 DLSGCSKLKRLPEISSGNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR  311 (403)
Q Consensus       233 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  311 (403)
                      ++++|                      .++.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus        89 ~L~~n----------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  146 (251)
T 3m19_A           89 GLANN----------------------QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI  146 (251)
T ss_dssp             ECTTS----------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ECCCC----------------------cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence            77664                      444444 3457899999999999997766555678899999999999988777


Q ss_pred             cCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCCCc
Q 015671          312 LPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERLQS  358 (403)
Q Consensus       312 ~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~  358 (403)
                      .+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|+....
T Consensus       147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            66688999999999999999997765 678899999999999987654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.74  E-value=5.7e-20  Score=173.29  Aligned_cols=227  Identities=15%  Similarity=0.086  Sum_probs=164.4

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCccc-----cccccccCCCCcEeeccccc--CccccCCC-C----C
Q 015671          131 AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQ-----LWDCVKHYSKLNQIIHAVCH--RLIAKTPN-P----T  197 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~--~~~~~~~~-~----~  197 (403)
                      ..|++..+....+..++..+ .+++|++|++++|.+..     ++..+..+++|++|++++|.  .+.+.+|. +    .
T Consensus         9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~   88 (386)
T 2ca6_A            9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ   88 (386)
T ss_dssp             CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence            33444444444444555544 57788888888888764     33457788899999998872  22212221 0    1


Q ss_pred             CCCCCCCCcEEEecCCCCCC----ccCccCCCCCCCCEEeecCCCCCCCCccccc---------------CCCcEEEecC
Q 015671          198 LMPRLNKVVILNLRGSKSLK----SLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---------------GNISWLFLTG  258 (403)
Q Consensus       198 ~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------------~~L~~L~l~~  258 (403)
                      .+.++++|++|++++|.+..    .++..+..+++|++|++++|......+....               ++|++|++++
T Consensus        89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence            23677889999999988766    4666777889999999998765322111111               5899999999


Q ss_pred             ccCc--ccC---hhhhCCCCCCEEecccCcCCC-----cCCccccCCCCCcEEeecCCCCC----cccCcccCCCCCCCE
Q 015671          259 TAIK--ELP---SSIESLLRLEYLDLSDCKRLK-----SLPSSLCKLKSLGVLNLYGCSNL----QRLPECLGQLSSPIT  324 (403)
Q Consensus       259 ~~~~--~l~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~  324 (403)
                      |.++  .++   ..+..+++|+.|++++|.+..     ..+..+..+++|+.|++++|.+.    ..+|..+..+++|+.
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            9886  444   456789999999999998662     23336788999999999999875    667888899999999


Q ss_pred             EEccCCCCcc-----cChhhhc--CCCCCEEeccCCcCCC
Q 015671          325 LGLTETNIER-----IPESIIQ--HFVLRYLLLSYSERLQ  357 (403)
Q Consensus       325 L~l~~~~l~~-----l~~~~~~--~~~L~~L~l~~c~~l~  357 (403)
                      |++++|.++.     ++..+..  +++|++|++++|....
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            9999999983     4666643  8999999999998766

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=6.5e-17  Score=158.39  Aligned_cols=187  Identities=17%  Similarity=0.192  Sum_probs=152.3

Q ss_pred             CCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEee
Q 015671          103 KLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQII  182 (403)
Q Consensus       103 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~  182 (403)
                      +|+.|++++|.+.       .+|..+. ++|++|++++|.++.+|  -.+++|++|++++|.++.+|. +..  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~-------~lp~~l~-~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLS-------SLPDNLP-PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCS-------CCCSCCC-TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCC-------ccCHhHc-CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence            8999999999875       2444332 78999999999999999  357899999999999999887 554  999999


Q ss_pred             cccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCc
Q 015671          183 HAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIK  262 (403)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  262 (403)
                      +++| .++ .+|.     .+++|+.|++++|.+.+ +|.   .+++|+.|++++|.. +.+|. +.++|+.|++++|.++
T Consensus       127 Ls~N-~l~-~lp~-----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L-~~lp~-l~~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          127 VDNN-QLT-MLPE-----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL-TFLPE-LPESLEALDVSTNLLE  193 (571)
T ss_dssp             CCSS-CCS-CCCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCSSCCS
T ss_pred             CCCC-cCC-CCCC-----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC-CCcch-hhCCCCEEECcCCCCC
Confidence            9998 444 3443     67899999999988654 666   578999999999764 44777 4499999999999999


Q ss_pred             ccChhhhCCCCC-------CEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCC
Q 015671          263 ELPSSIESLLRL-------EYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL  319 (403)
Q Consensus       263 ~l~~~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  319 (403)
                      .+|. +..  +|       +.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            9887 543  77       99999999865 688888889999999999999999888776554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=6.7e-17  Score=146.02  Aligned_cols=169  Identities=21%  Similarity=0.210  Sum_probs=99.0

Q ss_pred             CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671          151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT  230 (403)
Q Consensus       151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  230 (403)
                      .+++|++|++++|.+..++ .+..+++|++|++++|     .+..+..+.++++|++|++++|.+.. ++. +..+++|+
T Consensus        44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-----~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~  115 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-----KLTDIKPLANLKNLGWLFLDENKVKD-LSS-LKDLKKLK  115 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-----CCCCCGGGTTCTTCCEEECCSSCCCC-GGG-GTTCTTCC
T ss_pred             hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-----ccCCCcccccCCCCCEEECCCCcCCC-Chh-hccCCCCC
Confidence            4667777777777777664 3666777777777777     22222226666777777777766433 333 66667777


Q ss_pred             EEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCc
Q 015671          231 KLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQ  310 (403)
Q Consensus       231 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  310 (403)
                      .|++++|.                      ++.+ ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+
T Consensus       116 ~L~L~~n~----------------------i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          116 SLSLEHNG----------------------ISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             EEECTTSC----------------------CCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             EEECCCCc----------------------CCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            77776653                      3333 2344555566666655554332  334555666666666655444


Q ss_pred             ccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcC
Q 015671          311 RLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       311 ~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~  355 (403)
                      ..+  +..+++|+.|++++|.++.++. +..+++|+.|++++|+.
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred             chh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence            332  5556666666666666665543 55566666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.8e-17  Score=151.30  Aligned_cols=222  Identities=15%  Similarity=0.083  Sum_probs=156.0

Q ss_pred             CCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCC-CCCC---CCCCCceEEEccCCCcccc-c----cc
Q 015671          101 MPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKS-FPSN---LSAEKLVLFEVPENDIEQL-W----DC  171 (403)
Q Consensus       101 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~-lp~~---~~l~~L~~L~l~~~~~~~l-~----~~  171 (403)
                      ...++.+.+.++.+...  ....+...+..++|++|++++|.+.. .|..   ..+++|++|++++|.+... +    ..
T Consensus        63 ~~~l~~l~l~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQ--LLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             SCCCCEEEECSCCCBHH--HHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             hcceeEEEEeCCcCCHH--HHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence            34567777777655210  00011111112668899998888764 3444   3578899999999888752 1    23


Q ss_pred             cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCc--cC--ccCCCCCCCCEEeecCCCCCCCCccc-
Q 015671          172 VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKS--LP--SEIFNLEFLTKLDLSGCSKLKRLPEI-  246 (403)
Q Consensus       172 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-  246 (403)
                      +..+++|++|++++|. +. .++ ...++++++|++|++++|.+.+.  ++  ..++.+++|++|++++|.. +.++.. 
T Consensus       141 ~~~~~~L~~L~Ls~n~-l~-~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~  216 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAH-SP-AFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVC  216 (310)
T ss_dssp             TTBCSCCCEEEEECCS-SC-CCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHH
T ss_pred             hhhccCCCEEEeeCCC-cc-hhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHH
Confidence            4578899999999883 33 222 24677888999999999876542  22  2236788999999998754 444432 


Q ss_pred             ---cc--CCCcEEEecCccCccc-ChhhhCC---CCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccC
Q 015671          247 ---SS--GNISWLFLTGTAIKEL-PSSIESL---LRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLG  317 (403)
Q Consensus       247 ---~~--~~L~~L~l~~~~~~~l-~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  317 (403)
                         ..  ++|++|++++|.++.. |..+..+   ++|++|++++|.+. .+|..+.  ++|+.|++++|.+.+. |. +.
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~  291 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PD  291 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TT
T ss_pred             HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hh
Confidence               12  8999999999999866 6666665   69999999999876 6777664  7999999999887764 32 67


Q ss_pred             CCCCCCEEEccCCCCc
Q 015671          318 QLSSPITLGLTETNIE  333 (403)
Q Consensus       318 ~l~~L~~L~l~~~~l~  333 (403)
                      .+++|+.|++++|.++
T Consensus       292 ~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          292 ELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             SCCCCSCEECSSTTTS
T ss_pred             hCCCccEEECcCCCCC
Confidence            8899999999999876

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=1e-16  Score=144.86  Aligned_cols=169  Identities=17%  Similarity=0.168  Sum_probs=92.2

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL  210 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  210 (403)
                      ++|++|+++++.+..++....+++|++|++++|.+..++. +..+++|++|++++|     .+..+..+..+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-----~l~~~~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-----KVKDLSSLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-----CCCCGGGGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-----cCCCChhhccCCCCCEEEC
Confidence            4455555555555555543356666666666666666654 666777777777766     2222334666677777777


Q ss_pred             cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc
Q 015671          211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~  290 (403)
                      ++|.+.. + +.+..+++|+.|++++|...                      .+ ..+..+++|+.|++++|.+.+..+ 
T Consensus       120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~----------------------~~-~~l~~l~~L~~L~L~~N~l~~~~~-  173 (291)
T 1h6t_A          120 EHNGISD-I-NGLVHLPQLESLYLGNNKIT----------------------DI-TVLSRLTKLDTLSLEDNQISDIVP-  173 (291)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCC----------------------CC-GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCcCCC-C-hhhcCCCCCCEEEccCCcCC----------------------cc-hhhccCCCCCEEEccCCccccchh-
Confidence            7766433 3 33556677777777765322                      12 233444555555555554333222 


Q ss_pred             cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671          291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER  334 (403)
Q Consensus       291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~  334 (403)
                       +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.++.
T Consensus       174 -l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence             4455555555555544333 22 24555555555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.70  E-value=1.7e-18  Score=161.75  Aligned_cols=140  Identities=13%  Similarity=0.088  Sum_probs=64.1

Q ss_pred             hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-C-CeeEEEecCCCCCCCC-CCC-CC-----CCceEEEccCCCc
Q 015671           95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-A-EVKYLHWHGYPLKSFP-SNL-SA-----EKLVLFEVPENDI  165 (403)
Q Consensus        95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~-~L~~L~l~~~~~~~lp-~~~-~l-----~~L~~L~l~~~~~  165 (403)
                      +..+...++|++|++++|.+.+..+  ..+...+.. + +|++|++++|.+.... ..+ .+     ++|++|++++|.+
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            3344444557777777766532111  011122222 3 5666666666655432 111 11     5666666666666


Q ss_pred             cccc-c----ccccC-CCCcEeecccccCccccCCC---CCCCCC-CCCCcEEEecCCCCCC----ccCccCCCCC-CCC
Q 015671          166 EQLW-D----CVKHY-SKLNQIIHAVCHRLIAKTPN---PTLMPR-LNKVVILNLRGSKSLK----SLPSEIFNLE-FLT  230 (403)
Q Consensus       166 ~~l~-~----~~~~l-~~L~~L~l~~~~~~~~~~~~---~~~~~~-l~~L~~L~l~~~~~~~----~~~~~~~~l~-~L~  230 (403)
                      ...+ .    .+..+ ++|++|++++|. +. ..+.   ...+.. .++|++|++++|.+..    .++..+..++ +|+
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  170 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWND-FS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN  170 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSSC-GG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCCc-CC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence            5432 1    23333 566666666662 22 1110   001222 2356666666655432    1222223333 566


Q ss_pred             EEeecCCC
Q 015671          231 KLDLSGCS  238 (403)
Q Consensus       231 ~L~l~~~~  238 (403)
                      +|++++|.
T Consensus       171 ~L~Ls~n~  178 (362)
T 3goz_A          171 SLNLRGNN  178 (362)
T ss_dssp             EEECTTSC
T ss_pred             EeeecCCC
Confidence            66666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.3e-16  Score=135.65  Aligned_cols=106  Identities=16%  Similarity=0.153  Sum_probs=83.9

Q ss_pred             CCCcEEEecCccCcc-cChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671          249 GNISWLFLTGTAIKE-LPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL  327 (403)
Q Consensus       249 ~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  327 (403)
                      ++|++|++++|.++. .+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|...+.++ .+..+++|+.|++
T Consensus        88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l  166 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI  166 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred             CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence            444444454555553 56667888999999999999887778888899999999999988566666 6888999999999


Q ss_pred             cCCCCcccChhhhcCCCCCEEeccCCcCC
Q 015671          328 TETNIERIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       328 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                      ++|.++.++ .+..+++|+.|++++|+.-
T Consensus       167 ~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          167 QFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             CCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            999999887 6888999999999998743

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=1.6e-16  Score=157.18  Aligned_cols=188  Identities=16%  Similarity=0.157  Sum_probs=112.1

Q ss_pred             eeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671          133 VKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG  212 (403)
Q Consensus       133 L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (403)
                      +..+.+....+..+...-.+.+|+.|++++|.+..++ .+..+++|+.|++++| .+. .+   ..+..+++|+.|++++
T Consensus        23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~-~~---~~l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLT-DI---KPLTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCC-CC---GGGGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCC-CC---hhhccCCCCCEEECcC
Confidence            4444555555554443335777888888888877775 4677888888888877 222 22   2366777788888887


Q ss_pred             CCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCcc
Q 015671          213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSS  291 (403)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~  291 (403)
                      |.+.. ++ .+..+++|+.|++++|... .++.+.. ++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..|  
T Consensus        97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--  170 (605)
T 1m9s_A           97 NKIKD-LS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--  170 (605)
T ss_dssp             SCCCC-CT-TSTTCTTCCEEECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCCC-Ch-hhccCCCCCEEEecCCCCC-CCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--
Confidence            76433 33 4677777777777775533 3333332 5666666666666555 345556666666666665444333  


Q ss_pred             ccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671          292 LCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER  334 (403)
Q Consensus       292 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~  334 (403)
                      +..+++|+.|+|++|.+.+.  +.+..+++|+.|+|++|.+..
T Consensus       171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            55556666666666554432  235555666666666655553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=2.5e-16  Score=155.89  Aligned_cols=168  Identities=18%  Similarity=0.215  Sum_probs=79.7

Q ss_pred             cCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCC
Q 015671           99 TKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSK  177 (403)
Q Consensus        99 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~  177 (403)
                      ..+++|+.|++++|.+.       .++ .+.. ++|+.|+|++|.+..++....+++|+.|+|++|.+..++ .+..+++
T Consensus        40 ~~L~~L~~L~l~~n~i~-------~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~  110 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIK-------SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKK  110 (605)
T ss_dssp             HHHTTCCCCBCTTCCCC-------CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTT
T ss_pred             hcCCCCCEEECcCCCCC-------CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCC
Confidence            34555666666655542       111 2333 555555555555555544224555555555555555543 4455555


Q ss_pred             CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEe
Q 015671          178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFL  256 (403)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l  256 (403)
                      |+.|++++|     .+..+..+..+++|+.|++++|.+...  +.++.+++|+.|++++|......| +.. ++|+.|++
T Consensus       111 L~~L~Ls~N-----~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L  182 (605)
T 1m9s_A          111 LKSLSLEHN-----GISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYL  182 (605)
T ss_dssp             CCEEECTTS-----CCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             CCEEEecCC-----CCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEEC
Confidence            555555555     222222344455555555555543332  234455555555555543332222 111 44444444


Q ss_pred             cCccCcccChhhhCCCCCCEEecccCcC
Q 015671          257 TGTAIKELPSSIESLLRLEYLDLSDCKR  284 (403)
Q Consensus       257 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~  284 (403)
                      ++|.++.++ .+..+++|+.|++++|.+
T Consensus       183 s~N~i~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          183 SKNHISDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred             cCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence            444444432 244444444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=6.5e-16  Score=132.41  Aligned_cols=98  Identities=17%  Similarity=0.229  Sum_probs=46.5

Q ss_pred             EEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCC
Q 015671          135 YLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGS  213 (403)
Q Consensus       135 ~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  213 (403)
                      .++.+++.+..+|..+ .++|++|++++|.+..++. .+..+++|++|++++| .+. .++. ..+..+++|++|++++|
T Consensus        11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~-~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQ-SLPN-GVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCT-TTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccC-ccCh-hhcCCCCCcCEEECCCC
Confidence            4555555566665443 3356666666666655543 3455555555555555 222 2221 12344455555555554


Q ss_pred             CCCCccCccCCCCCCCCEEeecC
Q 015671          214 KSLKSLPSEIFNLEFLTKLDLSG  236 (403)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~  236 (403)
                      .+....+..+..+++|+.|++++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~  109 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNT  109 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCccCHhHhcCccCCCEEEcCC
Confidence            43322222234444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=1.5e-15  Score=130.08  Aligned_cols=157  Identities=19%  Similarity=0.227  Sum_probs=95.6

Q ss_pred             CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          131 AEVKYLHWHGYPLKSFPSNL--SAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      ++|++|+++++.++.++...  .+++|++|++++|.+..++. .+..+++|++|++++| .+. .++. ..+.++++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~-~~~~~l~~L~~  104 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQ-SLPN-GVFDKLTQLKE  104 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCT-TTTTTCTTCCE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCC-ccCH-hHhcCccCCCE
Confidence            57777888777777776543  57778888888777777654 4567777888888777 333 3321 24567777788


Q ss_pred             EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCCC
Q 015671          208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLK  286 (403)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~  286 (403)
                      |++++|.+....+..+..+++|+.|++++|..                      +.++. .+..+++|+.|++++|.+.+
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l----------------------~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL----------------------KSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----------------------SCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCcc----------------------ceeCHHHhccCCCccEEEecCCCeec
Confidence            88877765544444456677777777766432                      22222 23455566666666654322


Q ss_pred             cCCccccCCCCCcEEeecCCCCCcccCcccCCC
Q 015671          287 SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL  319 (403)
Q Consensus       287 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  319 (403)
                             .++.|+.|+++.|.+.+.+|++++.+
T Consensus       163 -------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          163 -------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             -------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             -------CCCCHHHHHHHHHhCCceeeccCccc
Confidence                   24455555666555555555554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=5.3e-16  Score=131.80  Aligned_cols=150  Identities=12%  Similarity=0.128  Sum_probs=81.9

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL  210 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  210 (403)
                      ++|++|+++++.+..+|....+++|++|++++|.+..++ .+..+++|++|++++|. +.+..  +..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~--~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSDK--IPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGGG--SCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCccc--ChhhcCCCCCCEEEe
Confidence            344444454555555552224556666666666554443 45566677777776662 21011  235666677777777


Q ss_pred             cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc
Q 015671          211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~  290 (403)
                      ++|.+....+..++.+++|+.|++++|..++.++                      .+..+++|+.|++++|.+.. ++ 
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----------------------~l~~l~~L~~L~l~~n~i~~-~~-  175 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----------------------PLKTLPELKSLNIQFDGVHD-YR-  175 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----------------------GGGGCSSCCEEECTTBCCCC-CT-
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----------------------hhcCCCCCCEEECCCCCCcC-hH-
Confidence            7776655556666677777777777755343333                      34445555555555555332 22 


Q ss_pred             cccCCCCCcEEeecCCCC
Q 015671          291 SLCKLKSLGVLNLYGCSN  308 (403)
Q Consensus       291 ~~~~l~~L~~L~l~~~~~  308 (403)
                      .+..+++|+.|++++|.+
T Consensus       176 ~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             TGGGCSSCCEEEECBC--
T ss_pred             HhccCCCCCEEEeeCccc
Confidence            344555566666655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.65  E-value=6.5e-18  Score=157.70  Aligned_cols=245  Identities=15%  Similarity=0.043  Sum_probs=173.1

Q ss_pred             EEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCC-----CC-CCC-CceEEEccCCCcccc-ccccccC--
Q 015671          107 LKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPS-----NL-SAE-KLVLFEVPENDIEQL-WDCVKHY--  175 (403)
Q Consensus       107 L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~-----~~-~l~-~L~~L~l~~~~~~~l-~~~~~~l--  175 (403)
                      +.++.|.+.|      ..+..+.. .+|++|++++|.+...+.     .+ .++ +|++|++++|.+... +..+..+  
T Consensus         3 ~~ls~n~~~~------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~   76 (362)
T 3goz_A            3 YKLTLHPGSN------PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA   76 (362)
T ss_dssp             EECCCCTTCC------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred             cccccccchH------HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence            5667777653      23333444 669999999999988763     33 566 899999999999865 3444443  


Q ss_pred             ---CCCcEeecccccCccccCCC--CCCCCCC-CCCcEEEecCCCCCCccCcc----CCC-CCCCCEEeecCCCCCCCCc
Q 015671          176 ---SKLNQIIHAVCHRLIAKTPN--PTLMPRL-NKVVILNLRGSKSLKSLPSE----IFN-LEFLTKLDLSGCSKLKRLP  244 (403)
Q Consensus       176 ---~~L~~L~l~~~~~~~~~~~~--~~~~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~~  244 (403)
                         ++|++|++++|. +.+..+.  ...+..+ ++|++|++++|.+....+..    +.. .++|++|++++|.......
T Consensus        77 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  155 (362)
T 3goz_A           77 AIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS  155 (362)
T ss_dssp             TSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred             ccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence               999999999994 3311111  0113444 78999999999865443332    334 3699999999986553322


Q ss_pred             ccc----c---CCCcEEEecCccCcccCh-----hhhCC-CCCCEEecccCcCCCc----CCccccC-CCCCcEEeecCC
Q 015671          245 EIS----S---GNISWLFLTGTAIKELPS-----SIESL-LRLEYLDLSDCKRLKS----LPSSLCK-LKSLGVLNLYGC  306 (403)
Q Consensus       245 ~~~----~---~~L~~L~l~~~~~~~l~~-----~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~-l~~L~~L~l~~~  306 (403)
                      ...    .   .+|++|++++|.++....     .+... ++|+.|++++|.+...    ++..+.. .++|+.|++++|
T Consensus       156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence            221    1   499999999999985553     34555 5999999999986652    4445554 459999999999


Q ss_pred             CCCcccC----cccCCCCCCCEEEccCCCCc--------ccChhhhcCCCCCEEeccCCcCCCc
Q 015671          307 SNLQRLP----ECLGQLSSPITLGLTETNIE--------RIPESIIQHFVLRYLLLSYSERLQS  358 (403)
Q Consensus       307 ~~~~~~~----~~l~~l~~L~~L~l~~~~l~--------~l~~~~~~~~~L~~L~l~~c~~l~~  358 (403)
                      .+.+..+    ..+..+++|+.|++++|.+.        .++..+..+++|+.|++++|+....
T Consensus       236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            8766433    44578899999999999843        3344567788899999999986655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=3.3e-16  Score=139.32  Aligned_cols=167  Identities=22%  Similarity=0.199  Sum_probs=77.8

Q ss_pred             ceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEee
Q 015671          155 LVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDL  234 (403)
Q Consensus       155 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  234 (403)
                      +..++++++.++.++ .+..+++|+.|++++|     .+..+..+..+++|++|++++|.+.+ +++ +..+++|+.|++
T Consensus        21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-----~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-----NIQSLAGMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-----CCCCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred             HHHHHhcCCCccccc-chhhcCcCcEEECcCC-----CcccchHHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence            333444444444443 3344444555554444     11112233444444555555444222 222 444555555555


Q ss_pred             cCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCc
Q 015671          235 SGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE  314 (403)
Q Consensus       235 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  314 (403)
                      ++|.. +.++....++|+.|++++|.++.++ .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.+.  .
T Consensus        93 ~~N~l-~~l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A           93 NRNRL-KNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             CSSCC-SCCTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred             CCCcc-CCcCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--H
Confidence            54322 2222222244444444445554443 35556666666666655433 22 345556666666666555443  3


Q ss_pred             ccCCCCCCCEEEccCCCCccc
Q 015671          315 CLGQLSSPITLGLTETNIERI  335 (403)
Q Consensus       315 ~l~~l~~L~~L~l~~~~l~~l  335 (403)
                      .+..+++|+.|++++|.++..
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEECC
T ss_pred             HhccCCCCCEEeCCCCcccCC
Confidence            455566666666666655533

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.64  E-value=2.5e-17  Score=163.87  Aligned_cols=88  Identities=13%  Similarity=-0.016  Sum_probs=46.8

Q ss_pred             hhCCCCCCEEecccCc--CCCcCCccc-cCCCCCcEEeecCCCCCc-ccCcccCCCCCCCEEEccCCCCc--ccChhhhc
Q 015671          268 IESLLRLEYLDLSDCK--RLKSLPSSL-CKLKSLGVLNLYGCSNLQ-RLPECLGQLSSPITLGLTETNIE--RIPESIIQ  341 (403)
Q Consensus       268 ~~~l~~L~~L~l~~~~--~~~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~--~l~~~~~~  341 (403)
                      +..+++|+.|++++|.  +....+..+ ..+++|+.|++++|.+.+ .++..+.++++|+.|++++|.++  .++.....
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            3445555555554432  122111112 235566666666665544 23344456666777777776665  24444456


Q ss_pred             CCCCCEEeccCCcC
Q 015671          342 HFVLRYLLLSYSER  355 (403)
Q Consensus       342 ~~~L~~L~l~~c~~  355 (403)
                      +++|+.|++++|+.
T Consensus       512 l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          512 LPSLRYLWVQGYRA  525 (592)
T ss_dssp             CSSCCEEEEESCBC
T ss_pred             cCccCeeECcCCcC
Confidence            66677777776663

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.63  E-value=4.1e-15  Score=128.54  Aligned_cols=66  Identities=24%  Similarity=0.214  Sum_probs=37.6

Q ss_pred             hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          268 IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       268 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            344555555555555555444555555566666666665555555555556666666666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=1.2e-14  Score=125.69  Aligned_cols=110  Identities=16%  Similarity=0.073  Sum_probs=93.8

Q ss_pred             CCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671          249 GNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL  327 (403)
Q Consensus       249 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  327 (403)
                      ++|+.|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence            455555555566666664 6789999999999999988777777899999999999999999888899999999999999


Q ss_pred             cCCCCccc-ChhhhcCCCCCEEeccCCcCCCc
Q 015671          328 TETNIERI-PESIIQHFVLRYLLLSYSERLQS  358 (403)
Q Consensus       328 ~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~  358 (403)
                      ++|.++.+ |..+..+++|+.|++++|+....
T Consensus       137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99999976 77889999999999999986543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.61  E-value=9.5e-17  Score=159.71  Aligned_cols=269  Identities=14%  Similarity=0.002  Sum_probs=185.0

Q ss_pred             hhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCC----CCCCCC-CCCCceEEEccCCCccccc
Q 015671           96 STFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK----SFPSNL-SAEKLVLFEVPENDIEQLW  169 (403)
Q Consensus        96 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~----~lp~~~-~l~~L~~L~l~~~~~~~l~  169 (403)
                      ..+.++++|++|++++|.+.       .++..+.. ++|+.|+++++...    ..+..+ .+++|+.|++.++....+|
T Consensus       214 ~~~~~~~~L~~L~L~~~~~~-------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~  286 (592)
T 3ogk_B          214 TIARNCRSLVSVKVGDFEIL-------ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP  286 (592)
T ss_dssp             HHHHHCTTCCEEECSSCBGG-------GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG
T ss_pred             HHHhhCCCCcEEeccCccHH-------HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH
Confidence            34567899999999998763       34444444 89999999864321    222333 6889999999988777788


Q ss_pred             cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecC----------CCC
Q 015671          170 DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSG----------CSK  239 (403)
Q Consensus       170 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~----------~~~  239 (403)
                      ..+..+++|++|++++|. +.+... ...+..+++|++|++.++.....++.....+++|++|++++          |..
T Consensus       287 ~~~~~~~~L~~L~Ls~~~-l~~~~~-~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~  364 (592)
T 3ogk_B          287 ILFPFAAQIRKLDLLYAL-LETEDH-CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL  364 (592)
T ss_dssp             GGGGGGGGCCEEEETTCC-CCHHHH-HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred             HHHhhcCCCcEEecCCCc-CCHHHH-HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence            888899999999999985 321111 12356789999999984322223344345688999999994          555


Q ss_pred             CCCC--ccccc--CCCcEEEecCccCc-ccChhhh-CCCCCCEEeccc---CcCCCcC------CccccCCCCCcEEeec
Q 015671          240 LKRL--PEISS--GNISWLFLTGTAIK-ELPSSIE-SLLRLEYLDLSD---CKRLKSL------PSSLCKLKSLGVLNLY  304 (403)
Q Consensus       240 ~~~~--~~~~~--~~L~~L~l~~~~~~-~l~~~~~-~l~~L~~L~l~~---~~~~~~~------~~~~~~l~~L~~L~l~  304 (403)
                      ++..  +....  ++|++|.++++.++ ..+..+. .+++|+.|++++   |...+..      +..+..+++|+.|+++
T Consensus       365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~  444 (592)
T 3ogk_B          365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY  444 (592)
T ss_dssp             CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence            5432  22121  89999999888877 3334444 489999999973   2233332      2335668999999998


Q ss_pred             CCC--CCcccCccc-CCCCCCCEEEccCCCCc--ccChhhhcCCCCCEEeccCCcCCC--------cCCC-CeEeccCCC
Q 015671          305 GCS--NLQRLPECL-GQLSSPITLGLTETNIE--RIPESIIQHFVLRYLLLSYSERLQ--------SLPS-PLFLARGCL  370 (403)
Q Consensus       305 ~~~--~~~~~~~~l-~~l~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~--------~lp~-~~l~i~~c~  370 (403)
                      +|.  +.+..+..+ ..+++|+.|++++|.++  .++..+..+++|++|++++|+...        .+|. ..+++.+|+
T Consensus       445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            765  344333333 35889999999999998  567677889999999999998432        2333 367777776


Q ss_pred             CCCC
Q 015671          371 AMQP  374 (403)
Q Consensus       371 ~l~~  374 (403)
                       ++.
T Consensus       525 -it~  527 (592)
T 3ogk_B          525 -ASM  527 (592)
T ss_dssp             -CCT
T ss_pred             -CCH
Confidence             443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.61  E-value=1.2e-14  Score=125.63  Aligned_cols=113  Identities=24%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             CCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEE
Q 015671          199 MPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYL  277 (403)
Q Consensus       199 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L  277 (403)
                      +..+++|+.|++++|.+....|..+.++++|+.|++++|.                      ++.+|.. +..+++|+.|
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~----------------------l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK----------------------ITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEE
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc----------------------CCccCHhHccCCCCCCEE
Confidence            3444445555555544443334445555555555555432                      2223322 3455556666


Q ss_pred             ecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          278 DLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       278 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      ++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66666555554555556666666666666655555555666666666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=1.2e-18  Score=171.41  Aligned_cols=191  Identities=19%  Similarity=0.179  Sum_probs=117.6

Q ss_pred             CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671          151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT  230 (403)
Q Consensus       151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  230 (403)
                      ..++|+.|++++|.++.+|..++++++|+.|+++++..+. ..+..             +..+...+..|..++.+++|+
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~-~l~~l-------------l~~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL-TIILL-------------MRALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHHHH-------------HHHHCTGGGHHHHHHHHHHHH
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhh-hHHHH-------------HHhcccccCCHHHHHHHHhcc
Confidence            4678888899999998899889999999999887663211 11100             000011223333344444444


Q ss_pred             EEe-ecCCCCCCCCcc----------cccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCc
Q 015671          231 KLD-LSGCSKLKRLPE----------ISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLG  299 (403)
Q Consensus       231 ~L~-l~~~~~~~~~~~----------~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  299 (403)
                      .|+ ++.+ ....++.          .....|+.|++++|.++.+|. ++.+++|+.|++++|.+. .+|..++++++|+
T Consensus       413 ~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  489 (567)
T 1dce_A          413 AVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE  489 (567)
T ss_dssp             HHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred             cCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence            444 2221 0111110          001456667777777777765 777777777777777655 6677777777777


Q ss_pred             EEeecCCCCCcccCcccCCCCCCCEEEccCCCCccc--ChhhhcCCCCCEEeccCCcCCCcCC
Q 015671          300 VLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERI--PESIIQHFVLRYLLLSYSERLQSLP  360 (403)
Q Consensus       300 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~lp  360 (403)
                      .|++++|.+.+ +| .+..+++|+.|++++|.++.+  |..++.+++|+.|++++|+..+..|
T Consensus       490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            77777766655 55 677777777777777777765  6677777777777777776554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=2.7e-14  Score=123.41  Aligned_cols=132  Identities=20%  Similarity=0.175  Sum_probs=103.3

Q ss_pred             CCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEeccc
Q 015671          203 NKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSD  281 (403)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~  281 (403)
                      ++|+.|++++|.+....+..+..+++|+.|++++                      |.++.+ |..+..+++|++|++++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~----------------------N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN----------------------NQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS----------------------SCCCEECTTTTTTCSSCCEEECCS
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC----------------------CcCCCcCHHHhhCCcCCCEEECCC
Confidence            4566666666654433334455566666666655                      455544 56788999999999999


Q ss_pred             CcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671          282 CKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       282 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l  356 (403)
                      |.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99775555557889999999999999988888899999999999999999997765 4788999999999999753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=3.4e-14  Score=123.52  Aligned_cols=131  Identities=22%  Similarity=0.199  Sum_probs=75.2

Q ss_pred             CCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccCh-hhhCCCCCCEEeccc
Q 015671          203 NKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPS-SIESLLRLEYLDLSD  281 (403)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~  281 (403)
                      ++|++|++++|.+.+..|..+..+++|+.|++++|.                      ++.+|. .+..+++|+.|++++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~----------------------l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ----------------------LGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC----------------------CCCcChhhcccCCCcCEEECCC
Confidence            667777777777666556666677777777777654                      333332 234555566666655


Q ss_pred             CcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671          282 CKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       282 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l  356 (403)
                      |.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|+..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            5544433334455556666666655443 445555556666666666666665442 3455566666666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=1.4e-14  Score=135.05  Aligned_cols=173  Identities=18%  Similarity=0.183  Sum_probs=110.8

Q ss_pred             eEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccc-cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEec
Q 015671          134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVK-HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLR  211 (403)
Q Consensus       134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  211 (403)
                      +.++++++.++.+|..+ ...++.|++++|.++.++. .+. .+++|+.|++++| .+. .++ ...+.++++|++|+++
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~-~i~-~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLN-FIS-SEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCC-EEC-TTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCC-ccC-hhhccCCCCCCEEECC
Confidence            46777787788887654 2357778888888777654 344 6777777777776 232 222 1246666777777777


Q ss_pred             CCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCc
Q 015671          212 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~  290 (403)
                      +|.+....+..+..+++|+.|++++|                      .++.+ |..+..+++|+.|++++|.+.. +|.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N----------------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~  153 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNN----------------------HIVVVDRNAFEDMAQLQKLYLSQNQISR-FPV  153 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSS----------------------CCCEECTTTTTTCTTCCEEECCSSCCCS-CCG
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCC----------------------cccEECHHHhCCcccCCEEECCCCcCCe-eCH
Confidence            76644433444556666666666653                      34433 3456778888888888887554 444


Q ss_pred             c-c---cCCCCCcEEeecCCCCCcccCcccCCCCC--CCEEEccCCCCc
Q 015671          291 S-L---CKLKSLGVLNLYGCSNLQRLPECLGQLSS--PITLGLTETNIE  333 (403)
Q Consensus       291 ~-~---~~l~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~l~  333 (403)
                      . +   ..+++|+.|+|++|.+....+..+..++.  ++.|++.+|.+.
T Consensus       154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            3 3   46788888888887766554455566665  377888888776

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.58  E-value=2.9e-15  Score=133.18  Aligned_cols=146  Identities=20%  Similarity=0.235  Sum_probs=87.8

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL  210 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  210 (403)
                      ++|++|++++|.++.+|....+++|++|++++|.+..++. +..+++|++|++++| .+. .++   .+.. ++|+.|++
T Consensus        41 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~-~l~---~~~~-~~L~~L~L  113 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLK-NLN---GIPS-ACLSRLFL  113 (263)
T ss_dssp             TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCS-CCT---TCCC-SSCCEEEC
T ss_pred             CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccC-CcC---cccc-CcccEEEc
Confidence            6777777777777777633356777777777777776665 667777777777776 222 232   2333 66677777


Q ss_pred             cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc
Q 015671          211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~  290 (403)
                      ++|.+.+ ++ .++.+++|+.|++++|                      .++.++ .+..+++|+.|++++|.+.+.  .
T Consensus       114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N----------------------~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A          114 DNNELRD-TD-SLIHLKNLEILSIRNN----------------------KLKSIV-MLGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             CSSCCSB-SG-GGTTCTTCCEEECTTS----------------------CCCBCG-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred             cCCccCC-Ch-hhcCcccccEEECCCC----------------------cCCCCh-HHccCCCCCEEECCCCcCcch--H
Confidence            7665433 33 3556666666666664                      344443 355566666666666654443  3


Q ss_pred             cccCCCCCcEEeecCCCCCc
Q 015671          291 SLCKLKSLGVLNLYGCSNLQ  310 (403)
Q Consensus       291 ~~~~l~~L~~L~l~~~~~~~  310 (403)
                      .+..+++|+.|++++|.+..
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEEC
T ss_pred             HhccCCCCCEEeCCCCcccC
Confidence            45556666666666655443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=4.9e-14  Score=122.51  Aligned_cols=150  Identities=19%  Similarity=0.207  Sum_probs=74.1

Q ss_pred             eEEEecCCCCCCCCCCCCCCCceEEEccCCCcccc-ccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671          134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG  212 (403)
Q Consensus       134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (403)
                      +.++.+++.+..+|..+. ++|++|++++|.+..+ +..+..+++|++|++++|. +. .++. ..+..+++|++|++++
T Consensus        22 ~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~-~i~~-~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LG-ALPV-GVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCT-TTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CC-CcCh-hhcccCCCcCEEECCC
Confidence            445666666666665443 5566666666666654 3445555556666655552 22 2221 2334455555555555


Q ss_pred             CCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccc
Q 015671          213 SKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSL  292 (403)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~  292 (403)
                      |.+....+..+..+++|+.|++++                      |.++.+|..+..+++|+.|++++|.+.+..+..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~----------------------N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~  155 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCC----------------------NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF  155 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCS----------------------SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CcCCccChhHhCcchhhCeEeccC----------------------CcccccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence            443332223333444444444443                      3344445455555555555555555443333334


Q ss_pred             cCCCCCcEEeecCCCCC
Q 015671          293 CKLKSLGVLNLYGCSNL  309 (403)
Q Consensus       293 ~~l~~L~~L~l~~~~~~  309 (403)
                      ..+++|+.|++++|++.
T Consensus       156 ~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          156 DRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCTTCCEEECTTSCBC
T ss_pred             hCCCCCCEEEeeCCCcc
Confidence            45555555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.57  E-value=1.4e-14  Score=134.95  Aligned_cols=168  Identities=17%  Similarity=0.131  Sum_probs=122.2

Q ss_pred             cEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCC---CCCCceEEEccCCCccccc-cccccCCCCcE
Q 015671          105 RFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNL---SAEKLVLFEVPENDIEQLW-DCVKHYSKLNQ  180 (403)
Q Consensus       105 r~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~---~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~  180 (403)
                      ++++++++.+.       .+|..+. ..++.|+|++|.++.++...   .+++|++|++++|.+..++ ..+..+++|++
T Consensus        21 ~~l~c~~~~l~-------~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           21 NILSCSKQQLP-------NVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY   92 (361)
T ss_dssp             TEEECCSSCCS-------SCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CEEEeCCCCcC-------ccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence            67888887763       4554332 67899999999999887543   6899999999999999886 57899999999


Q ss_pred             eecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccc------cCCCcEE
Q 015671          181 IIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEIS------SGNISWL  254 (403)
Q Consensus       181 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------~~~L~~L  254 (403)
                      |++++|. +. .++ ...+.++++|+.|++++|.+....+..+..+++|+.|++++|.. ..+|...      .++|+.|
T Consensus        93 L~Ls~N~-l~-~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           93 LDLSSNH-LH-TLD-EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             EECCSSC-CC-EEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEE
T ss_pred             EECCCCc-CC-cCC-HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEE
Confidence            9999993 44 333 23678899999999999997776677889999999999998653 3344322      1556666


Q ss_pred             EecCccCcccCh-hhhCCCC--CCEEecccCcC
Q 015671          255 FLTGTAIKELPS-SIESLLR--LEYLDLSDCKR  284 (403)
Q Consensus       255 ~l~~~~~~~l~~-~~~~l~~--L~~L~l~~~~~  284 (403)
                      ++++|.++.+|. .+..++.  ++.|++++|++
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             ECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            666666555552 3344443  25555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=3.5e-17  Score=160.94  Aligned_cols=191  Identities=17%  Similarity=0.080  Sum_probs=135.7

Q ss_pred             CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCC-------------cc-ccccccccCCCCcEee-cccccCccccCC
Q 015671          131 AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPEND-------------IE-QLWDCVKHYSKLNQII-HAVCHRLIAKTP  194 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~-------------~~-~l~~~~~~l~~L~~L~-l~~~~~~~~~~~  194 (403)
                      ++|+.|++++|.++.+|..+ .+++|+.|+++++.             .. ..|..++.+++|+.|+ ++.+. +. .++
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~-~L~  426 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD-DLR  426 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH-HHH
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc-hhh
Confidence            88999999999999999888 78999999986653             12 3456677788888887 44431 11 110


Q ss_pred             C-------CCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh
Q 015671          195 N-------PTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS  267 (403)
Q Consensus       195 ~-------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~  267 (403)
                      .       +..+. ...|+.|++++|.+. .+|. ++.++                      +|+.|++++|.++.+|..
T Consensus       427 ~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~-~lp~-~~~l~----------------------~L~~L~Ls~N~l~~lp~~  481 (567)
T 1dce_A          427 SKFLLENSVLKME-YADVRVLHLAHKDLT-VLCH-LEQLL----------------------LVTHLDLSHNRLRALPPA  481 (567)
T ss_dssp             HHHHHHHHHHHHH-HTTCSEEECTTSCCS-SCCC-GGGGT----------------------TCCEEECCSSCCCCCCGG
T ss_pred             hhhhhcccccccC-ccCceEEEecCCCCC-CCcC-ccccc----------------------cCcEeecCcccccccchh
Confidence            0       00000 012455555554432 2343 44444                      455555555667778888


Q ss_pred             hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCccc-CcccCCCCCCCEEEccCCCCcccChh----hhcC
Q 015671          268 IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL-PECLGQLSSPITLGLTETNIERIPES----IIQH  342 (403)
Q Consensus       268 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~l~~~----~~~~  342 (403)
                      ++.+++|+.|++++|.+.+ +| .++.+++|+.|++++|.+.+.. |..+..+++|+.|++++|.++.+|..    ...+
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l  559 (567)
T 1dce_A          482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML  559 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred             hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence            9999999999999998765 67 7889999999999999888776 88999999999999999999976653    3458


Q ss_pred             CCCCEEec
Q 015671          343 FVLRYLLL  350 (403)
Q Consensus       343 ~~L~~L~l  350 (403)
                      |+|+.|++
T Consensus       560 p~L~~L~l  567 (567)
T 1dce_A          560 PSVSSILT  567 (567)
T ss_dssp             TTCSEEEC
T ss_pred             cccCccCC
Confidence            89998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.53  E-value=1.2e-13  Score=116.62  Aligned_cols=130  Identities=20%  Similarity=0.141  Sum_probs=86.4

Q ss_pred             CEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh--hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCC
Q 015671          230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS--IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS  307 (403)
Q Consensus       230 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  307 (403)
                      ++++++++ .++.+|.....++++|++++|.++.++..  +..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus        11 ~~l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            34444442 23444443334556666666666666542  6777777777777777776667777777777777777777


Q ss_pred             CCcccCcccCCCCCCCEEEccCCCCccc-ChhhhcCCCCCEEeccCCcCCCcCC
Q 015671          308 NLQRLPECLGQLSSPITLGLTETNIERI-PESIIQHFVLRYLLLSYSERLQSLP  360 (403)
Q Consensus       308 ~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~lp  360 (403)
                      +.+..+..+.++++|+.|++++|.++.+ |..+..+++|++|++++|+.....+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            7776666677777778888877777743 5566777777788877776654433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.52  E-value=5.5e-16  Score=154.24  Aligned_cols=106  Identities=14%  Similarity=0.070  Sum_probs=54.4

Q ss_pred             CCCcEEEecCccCccc-Chhh-hCCCCCCEEecc-----cCcCCCcCC------ccccCCCCCcEEeecCCCCCcccCcc
Q 015671          249 GNISWLFLTGTAIKEL-PSSI-ESLLRLEYLDLS-----DCKRLKSLP------SSLCKLKSLGVLNLYGCSNLQRLPEC  315 (403)
Q Consensus       249 ~~L~~L~l~~~~~~~l-~~~~-~~l~~L~~L~l~-----~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~  315 (403)
                      ++|+.|.+.++.++.. +..+ ..+++|+.|+++     +|...+..|      ..+..+++|+.|++++ .+.+..+..
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~  450 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY  450 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence            4555555544444411 1122 246677777776     233233222      1134456666666655 333332233


Q ss_pred             cCC-CCCCCEEEccCCCCc--ccChhhhcCCCCCEEeccCCcC
Q 015671          316 LGQ-LSSPITLGLTETNIE--RIPESIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       316 l~~-l~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c~~  355 (403)
                      +.. +++|+.|++++|.++  .++.....+++|+.|++++|+.
T Consensus       451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            332 666777777777765  2332235567777777777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=2.2e-13  Score=115.04  Aligned_cols=126  Identities=22%  Similarity=0.227  Sum_probs=100.7

Q ss_pred             CEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671          230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL  309 (403)
Q Consensus       230 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  309 (403)
                      +.+++++ ..++.+|.....++++|++++|.++.+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        13 ~~l~~~~-~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSN-KGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTT-SCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCC-CCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            4555555 334455554446777777777888888888888999999999999887766677888999999999998888


Q ss_pred             cccCcccCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671          310 QRLPECLGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       310 ~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l  356 (403)
                      +..+..+.++++|+.|++++|.++.+|. .+..+++|+.|++++|+..
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            8777788899999999999999997776 4678899999999998753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=7.7e-14  Score=115.14  Aligned_cols=136  Identities=24%  Similarity=0.178  Sum_probs=94.5

Q ss_pred             CCCCcEEEecCCCCC-CccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecc
Q 015671          202 LNKVVILNLRGSKSL-KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLS  280 (403)
Q Consensus       202 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  280 (403)
                      .++|++|++++|.+. +.+|..+..+++|+.|++++|.                      ++.+ ..+..+++|+.|+++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls   79 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----------------------LISV-SNLPKLPKLKKLELS   79 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC----------------------CCCC-SSCCCCSSCCEEEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC----------------------CCCh-hhhccCCCCCEEECc
Confidence            367788888888765 4677766777888888887754                      2223 345567777777777


Q ss_pred             cCcCCCcCCccccCCCCCcEEeecCCCCCcc-cCcccCCCCCCCEEEccCCCCcccCh----hhhcCCCCCEEeccCCcC
Q 015671          281 DCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR-LPECLGQLSSPITLGLTETNIERIPE----SIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       281 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~l~~----~~~~~~~L~~L~l~~c~~  355 (403)
                      +|.+.+.+|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.+|.    .+..+++|+.|++++|..
T Consensus        80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            7776665666666677777777777766553 22567778888888888888877665    667788888888887753


Q ss_pred             CCcCCC
Q 015671          356 LQSLPS  361 (403)
Q Consensus       356 l~~lp~  361 (403)
                       ..+|.
T Consensus       160 -~~~~~  164 (168)
T 2ell_A          160 -QEAPD  164 (168)
T ss_dssp             -CBCCS
T ss_pred             -hhccc
Confidence             34443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.49  E-value=1.4e-13  Score=113.61  Aligned_cols=141  Identities=22%  Similarity=0.225  Sum_probs=100.7

Q ss_pred             ccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCc
Q 015671          173 KHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNIS  252 (403)
Q Consensus       173 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~  252 (403)
                      ...++|+.|++++|....+.+|.  .+..+++|++|++++|.+...  ..++.+++|+.|++++|.....          
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~----------   86 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEG--LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG----------   86 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC----------
T ss_pred             CCcccCCEEECCCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH----------
Confidence            44689999999999533124543  468889999999999986554  6688889999999988653322          


Q ss_pred             EEEecCccCcccChhhhCCCCCCEEecccCcCCCc-CCccccCCCCCcEEeecCCCCCcccC---cccCCCCCCCEEEcc
Q 015671          253 WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKS-LPSSLCKLKSLGVLNLYGCSNLQRLP---ECLGQLSSPITLGLT  328 (403)
Q Consensus       253 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~  328 (403)
                                 +|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..+   ..+..+++|+.|+++
T Consensus        87 -----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A           87 -----------LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             -----------CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred             -----------HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence                       445555677788888877765442 12566777888888888877655444   367778888888888


Q ss_pred             CCCCcccChh
Q 015671          329 ETNIERIPES  338 (403)
Q Consensus       329 ~~~l~~l~~~  338 (403)
                      +|.+..+|..
T Consensus       156 ~n~~~~~~~~  165 (168)
T 2ell_A          156 DREDQEAPDS  165 (168)
T ss_dssp             ETTSCBCCSS
T ss_pred             CCChhhcccc
Confidence            8887777653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=6.2e-15  Score=149.34  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=81.8

Q ss_pred             CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671          151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT  230 (403)
Q Consensus       151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  230 (403)
                      .+..|+.|+|++|.+..+|..+..+++|++|++++| .+. .+|.  .+.++++|++|++++|.+. .+|..++.+++|+
T Consensus       222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~-~lp~--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  296 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLT-ELPA--EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK  296 (727)
T ss_dssp             CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCS-CCCG--GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred             cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCc-ccCh--hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence            466666666666666666655556666666666666 233 3332  3455566666666665543 4555555555555


Q ss_pred             EEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCC-CcEEeecCCCCC
Q 015671          231 KLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKS-LGVLNLYGCSNL  309 (403)
Q Consensus       231 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~  309 (403)
                      .|++++                      |.++.+|..++.+++|+.|++++|.+.+.+|..+..+.. +..+++++|.+.
T Consensus       297 ~L~L~~----------------------N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          297 YFYFFD----------------------NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             EEECCS----------------------SCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             EEECCC----------------------CCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence            555555                      445566666777777777777777777666665443221 223566776666


Q ss_pred             cccCcccCCCCCCCEEEccCC
Q 015671          310 QRLPECLGQLSSPITLGLTET  330 (403)
Q Consensus       310 ~~~~~~l~~l~~L~~L~l~~~  330 (403)
                      +.+|..      |+.|+++.|
T Consensus       355 ~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          355 IPLPHE------RRFIEINTD  369 (727)
T ss_dssp             CCCCCC---------------
T ss_pred             CcCccc------cceeEeecc
Confidence            666543      344455544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=6.6e-14  Score=113.10  Aligned_cols=128  Identities=23%  Similarity=0.150  Sum_probs=96.8

Q ss_pred             CCCCcEEEecCCCCC-CccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecc
Q 015671          202 LNKVVILNLRGSKSL-KSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLS  280 (403)
Q Consensus       202 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  280 (403)
                      .++|+.|++++|.+. +.+|..++.+++|+.|++++|.                      ++.+ ..+..+++|++|+++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls   72 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----------------------LTSI-ANLPKLNKLKKLELS   72 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----------------------CCCC-TTCCCCTTCCEEECC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----------------------CCCc-hhhhcCCCCCEEECC
Confidence            366788888888765 4677767777888888877754                      3333 456677888888888


Q ss_pred             cCcCCCcCCccccCCCCCcEEeecCCCCCcc-cCcccCCCCCCCEEEccCCCCcccCh----hhhcCCCCCEEeccC
Q 015671          281 DCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR-LPECLGQLSSPITLGLTETNIERIPE----SIIQHFVLRYLLLSY  352 (403)
Q Consensus       281 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~l~~----~~~~~~~L~~L~l~~  352 (403)
                      +|.+.+.+|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.++.    .+..+++|+.|++++
T Consensus        73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8887776777777788888888888877663 34677888899999999998887765    678889999988763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.46  E-value=1e-15  Score=152.22  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=15.4

Q ss_pred             CCCcEEEecCccCcc--cChhhhCCCCCCEEecccC
Q 015671          249 GNISWLFLTGTAIKE--LPSSIESLLRLEYLDLSDC  282 (403)
Q Consensus       249 ~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~  282 (403)
                      ++|+.|++++|.++.  ++..+..+++|+.|++.+|
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            455555555544431  1222334455555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.44  E-value=1.5e-12  Score=108.39  Aligned_cols=128  Identities=19%  Similarity=0.193  Sum_probs=84.8

Q ss_pred             CEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCC
Q 015671          230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSN  308 (403)
Q Consensus       230 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  308 (403)
                      +.++++++ .+..+|....++++.|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus        10 ~~l~~~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           10 TEIRCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TEEECCSS-CCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCC-CCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            34444432 23333333335556666666666655543 46778888888888776654445567788888888888777


Q ss_pred             CcccCcccCCCCCCCEEEccCCCCcccChh-hhcCCCCCEEeccCCcCCCc
Q 015671          309 LQRLPECLGQLSSPITLGLTETNIERIPES-IIQHFVLRYLLLSYSERLQS  358 (403)
Q Consensus       309 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~  358 (403)
                      .+..+..+..+++|+.|++++|.++.+|.. +..+++|++|++++|+..+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            766666677788888888888888877664 36678888888888875543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=4.3e-13  Score=111.54  Aligned_cols=103  Identities=18%  Similarity=0.100  Sum_probs=72.6

Q ss_pred             CCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCc--ccCCCCCCCEEEc
Q 015671          250 NISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE--CLGQLSSPITLGL  327 (403)
Q Consensus       250 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l  327 (403)
                      +|++|++++|.++.+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+ +.+|.  .+..+++|+.|++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEe
Confidence            455555555555555 4566777888888888776543333346778888888888766 44554  6777888888888


Q ss_pred             cCCCCcccChh----hhcCCCCCEEeccCCc
Q 015671          328 TETNIERIPES----IIQHFVLRYLLLSYSE  354 (403)
Q Consensus       328 ~~~~l~~l~~~----~~~~~~L~~L~l~~c~  354 (403)
                      ++|.++.+|..    +..+++|+.|++++|.
T Consensus       121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            88888877764    7788888888888775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=2.9e-13  Score=109.22  Aligned_cols=130  Identities=20%  Similarity=0.144  Sum_probs=85.6

Q ss_pred             cCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcE
Q 015671          174 HYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISW  253 (403)
Q Consensus       174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~  253 (403)
                      ..++|+.|++++|....+.+|.  .+..+++|++|++++|.+...  ..++.+++|+.|++++|...+.           
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-----------   79 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-----------   79 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-----------
T ss_pred             CCccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-----------
Confidence            4588999999999433124543  678899999999999986554  5678889999999988654332           


Q ss_pred             EEecCccCcccChhhhCCCCCCEEecccCcCCCc-CCccccCCCCCcEEeecCCCCCcccC---cccCCCCCCCEEEcc
Q 015671          254 LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKS-LPSSLCKLKSLGVLNLYGCSNLQRLP---ECLGQLSSPITLGLT  328 (403)
Q Consensus       254 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~  328 (403)
                                +|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..+   ..+..+++|+.|+++
T Consensus        80 ----------~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           80 ----------LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ----------THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ----------HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                      333444566666666666664442 22455666666666666665544433   345666666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=1.4e-12  Score=110.01  Aligned_cols=99  Identities=15%  Similarity=0.185  Sum_probs=46.7

Q ss_pred             eEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc--ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEec
Q 015671          134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD--CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLR  211 (403)
Q Consensus       134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  211 (403)
                      ++++++++.++.+|..+. .+|++|++++|.+..++.  .+..+++|++|++++|. +. .++ +..+.++++|++|+++
T Consensus        11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~~~-~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LT-GIE-PNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CC-CBC-TTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CC-CcC-HhHcCCcccCCEEECC
Confidence            456666666666665442 256666666666655543  24555555555555551 21 110 1234444444444444


Q ss_pred             CCCCCCccCccCCCCCCCCEEeecC
Q 015671          212 GSKSLKSLPSEIFNLEFLTKLDLSG  236 (403)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~  236 (403)
                      +|.+.+..+..+..+++|++|++++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCC
Confidence            4443333333333444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=4.9e-13  Score=135.50  Aligned_cols=142  Identities=23%  Similarity=0.296  Sum_probs=114.3

Q ss_pred             ccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCC
Q 015671          218 SLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKL  295 (403)
Q Consensus       218 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  295 (403)
                      ..+..+..+++|+.|++++|... .+|...+  ++|++|+|++|.++.+|..++.+++|++|+|++|.+. .+|..++++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            34566788999999999997754 6665544  9999999999999999999999999999999999976 789999999


Q ss_pred             CCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCC-CCCEEeccCCcCCCcCCCC
Q 015671          296 KSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHF-VLRYLLLSYSERLQSLPSP  362 (403)
Q Consensus       296 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~-~L~~L~l~~c~~l~~lp~~  362 (403)
                      ++|+.|+|++|.+ +.+|..+..+++|+.|+|++|.++ .+|..+..+. .+..+++++|...+.+|..
T Consensus       293 ~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          293 FQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             TTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            9999999999876 478888999999999999999999 5555554332 2234789999999888884

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=1.3e-11  Score=104.09  Aligned_cols=100  Identities=16%  Similarity=0.171  Sum_probs=69.4

Q ss_pred             eEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCC
Q 015671          134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGS  213 (403)
Q Consensus       134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  213 (403)
                      ++++++++.++.+|..+ .++|++|++++|.++.+|..+..+++|+.|++++| .+. .++ ...+.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~-~i~-~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RIS-TLS-NQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCC-CCC-TTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCC-EeC-HhHccCCCCCCEEECCCC
Confidence            46777777888887654 35788888888888888877888888888888887 233 222 234667777777777777


Q ss_pred             CCCCccCccCCCCCCCCEEeecCC
Q 015671          214 KSLKSLPSEIFNLEFLTKLDLSGC  237 (403)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~  237 (403)
                      .+....+..+..+++|+.|++++|
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCC
Confidence            755555555666667777766664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.34  E-value=1.2e-11  Score=113.53  Aligned_cols=256  Identities=14%  Similarity=0.124  Sum_probs=146.6

Q ss_pred             CCCCcEEEEeccCCCCCCcccccccCCCC--CCCeeEEEecCCCCCCCCCCC-CCCCceEEEccCCCcccccccccc---
Q 015671          101 MPKLRFLKFYSSSFNGENKCKMSYLQDPG--FAEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPENDIEQLWDCVKH---  174 (403)
Q Consensus       101 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~--~~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~l~~~~~~---  174 (403)
                      +++|+.|.++++--      ...+ ..+.  .++|+.|+|++|.+..+.... ..+.+..+.+..+.+.  ...+..   
T Consensus        24 ~~~l~~L~l~g~i~------~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~   94 (329)
T 3sb4_A           24 ANSITHLTLTGKLN------AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVN   94 (329)
T ss_dssp             HHHCSEEEEEEEEC------HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEET
T ss_pred             hCceeEEEEecccc------HHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccC--HHHhccccc
Confidence            45788888876421      0011 1111  267999999998877221111 1122344444444221  124445   


Q ss_pred             -----CCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCC---CCCCCccc
Q 015671          175 -----YSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCS---KLKRLPEI  246 (403)
Q Consensus       175 -----l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~  246 (403)
                           +++|+.|++.+  .++ .++. ..+.+|++|+.+++.+|.....-+..+.++.++..+......   ....+...
T Consensus        95 ~~~~g~~~L~~l~L~~--~i~-~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~  170 (329)
T 3sb4_A           95 GVTKGKQTLEKVILSE--KIK-NIED-AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF  170 (329)
T ss_dssp             TEEEECTTCCC-CBCT--TCC-EECT-TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred             ccccccCCCcEEECCc--ccc-chhH-HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence                 88888888876  343 4443 467788888888888876544444555555555555443310   01111111


Q ss_pred             cc-----------------------------CCCcEEEecCccCcccChhh-hCCCCCCEEecccCcCCCcCCccccCCC
Q 015671          247 SS-----------------------------GNISWLFLTGTAIKELPSSI-ESLLRLEYLDLSDCKRLKSLPSSLCKLK  296 (403)
Q Consensus       247 ~~-----------------------------~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~  296 (403)
                      ..                             .++..+.+.+.-...-...+ ..+++|+.+++++|.+....+..|.+++
T Consensus       171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~  250 (329)
T 3sb4_A          171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK  250 (329)
T ss_dssp             CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred             ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence            00                             22333333322111101111 2378899999988775554445678888


Q ss_pred             CCcEEeecCCCCCcccCcccCCCCCCC-EEEccCCCCcccC-hhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCC
Q 015671          297 SLGVLNLYGCSNLQRLPECLGQLSSPI-TLGLTETNIERIP-ESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQP  374 (403)
Q Consensus       297 ~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~  374 (403)
                      +|+.+++.++ +....+.+|.++++|+ .+.+.+ .++.++ ..+..|++|+.+++++|. ++.++...  ..+|++|+.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~a--F~~~~~L~~  325 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDEL--FGNGVPSKL  325 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTT--TCTTCCCCE
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc-cCccchhh--hcCCcchhh
Confidence            9999999885 4444456688888898 898888 777664 567888899999987664 45555521  467888776

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.33  E-value=3.7e-12  Score=105.84  Aligned_cols=82  Identities=15%  Similarity=0.102  Sum_probs=43.0

Q ss_pred             CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccC-CCCCCC
Q 015671          151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEI-FNLEFL  229 (403)
Q Consensus       151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L  229 (403)
                      .+.+|++|++++|.+..++......++|++|++++| .+.    .+..+..+++|++|++++|.+. .+|+.+ +.+++|
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~----~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L   90 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIR----KLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   90 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCC----EECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCC----cccccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence            445555555655555555432222336666666665 222    2234555666666666666543 333322 556666


Q ss_pred             CEEeecCCC
Q 015671          230 TKLDLSGCS  238 (403)
Q Consensus       230 ~~L~l~~~~  238 (403)
                      +.|++++|.
T Consensus        91 ~~L~L~~N~   99 (176)
T 1a9n_A           91 TELILTNNS   99 (176)
T ss_dssp             CEEECCSCC
T ss_pred             CEEECCCCc
Confidence            666666643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.28  E-value=2.4e-11  Score=100.28  Aligned_cols=101  Identities=19%  Similarity=0.191  Sum_probs=54.5

Q ss_pred             EEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCC
Q 015671          253 WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNI  332 (403)
Q Consensus       253 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l  332 (403)
                      .++++++.++.+|..+  .++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus        13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            4444445555555433  25555555555555544455555555666666665555544444455556666666666665


Q ss_pred             cccCh-hhhcCCCCCEEeccCCcC
Q 015671          333 ERIPE-SIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       333 ~~l~~-~~~~~~~L~~L~l~~c~~  355 (403)
                      +.++. .+..+++|+.|++++|+.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCC
Confidence            55544 245555666666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.27  E-value=2.5e-11  Score=100.47  Aligned_cols=102  Identities=16%  Similarity=0.149  Sum_probs=59.8

Q ss_pred             cEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCC
Q 015671          252 SWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETN  331 (403)
Q Consensus       252 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  331 (403)
                      +.++++++.++.+|..+.  ++|+.|++++|.+.+..|..+.++++|+.|+|++|.+.+..+..+..+++|+.|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            344555555555555442  566666666666555555556666666666666665554444445566666666666666


Q ss_pred             CcccChh-hhcCCCCCEEeccCCcC
Q 015671          332 IERIPES-IIQHFVLRYLLLSYSER  355 (403)
Q Consensus       332 l~~l~~~-~~~~~~L~~L~l~~c~~  355 (403)
                      ++.+|.. +..+++|+.|++++|+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCc
Confidence            6655543 55666666666666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.27  E-value=1e-10  Score=97.07  Aligned_cols=110  Identities=24%  Similarity=0.171  Sum_probs=75.7

Q ss_pred             CCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChh-hhCCCCCCEEeccc
Q 015671          203 NKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSS-IESLLRLEYLDLSD  281 (403)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~  281 (403)
                      ++|++|++++|.+.+..+..++.+++|++|++++                      |.++.++.. +..+++|+.|++++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ----------------------NQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS----------------------SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCC----------------------CcceEeChhHccCCCccCEEECCC
Confidence            4566666666654433333345555666666555                      445555543 47788888888888


Q ss_pred             CcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcc
Q 015671          282 CKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIER  334 (403)
Q Consensus       282 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~  334 (403)
                      |.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            88776555567788889999998887766555556788899999999988773

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.22  E-value=1.2e-13  Score=117.26  Aligned_cols=125  Identities=22%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             cCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcE
Q 015671          222 EIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGV  300 (403)
Q Consensus       222 ~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  300 (403)
                      .++.+++|+.|++++|.. ..+|.... ++|+.|++++|.++.+|..+..+++|+.|++++|.+.+ +| .+..+++|+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l-~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEE-SCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCC-ccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence            445555666666655432 22442111 55666666666666666666666777777777776544 34 4566677777


Q ss_pred             EeecCCCCCcccC-cccCCCCCCCEEEccCCCCccc-Ch----------hhhcCCCCCEEe
Q 015671          301 LNLYGCSNLQRLP-ECLGQLSSPITLGLTETNIERI-PE----------SIIQHFVLRYLL  349 (403)
Q Consensus       301 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l-~~----------~~~~~~~L~~L~  349 (403)
                      |++++|.+.+..+ ..+..+++|+.|++++|.+... |.          .+..+++|+.|+
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            7777766554222 3566777777777777776533 21          256677777776

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.17  E-value=2.7e-09  Score=100.29  Aligned_cols=212  Identities=11%  Similarity=0.058  Sum_probs=139.5

Q ss_pred             CCeeEEEecCCCCCCCCCC-CCCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE
Q 015671          131 AEVKYLHWHGYPLKSFPSN-LSAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL  208 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  208 (403)
                      .+|+.+.+..+ ++.++.. |.-.+|+.+.+.. .+..++ ..+..+.+|+.+++.++ .+. .++. ..+. ..+|+.+
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~-~I~~-~aF~-~~~L~~l  208 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KIT-KLPA-STFV-YAGIEEV  208 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCS-EECT-TTTT-TCCCSEE
T ss_pred             CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cce-Eech-hhEe-ecccCEE
Confidence            56777777553 6666433 3334677887775 556554 46777888888888765 333 4443 2333 4678888


Q ss_pred             EecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCC
Q 015671          209 NLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRL  285 (403)
Q Consensus       209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~  285 (403)
                      .+..+ +...-...+.++++|+.+++..+  +..++...+  .+|+.+.+. +.++.++ ..+..+++|+.+.+.++...
T Consensus       209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          209 LLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred             EeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence            88753 22223355667788888888753  344443333  778888884 4456564 45678899999999876543


Q ss_pred             -----CcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC-hhhhcCCCCCEEeccCCcC
Q 015671          286 -----KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP-ESIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       286 -----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~  355 (403)
                           ..-+..|.++++|+.+.+.. .+...-..+|.++++|+.+.+..+ ++.++ ..+..+ +|+.+.+.+|..
T Consensus       285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence                 23334677899999999985 444444567888999999999654 66554 356777 999999998843

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.14  E-value=3.3e-10  Score=93.36  Aligned_cols=105  Identities=23%  Similarity=0.208  Sum_probs=79.5

Q ss_pred             CCEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCC
Q 015671          229 LTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCS  307 (403)
Q Consensus       229 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  307 (403)
                      .+.++++++ .++.+|.....+++.|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus        11 ~~~l~~s~n-~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           11 GTTVDCSGK-SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTEEECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCC-CcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            345555553 33445544446677777777777776 4567889999999999998776555567889999999999988


Q ss_pred             CCcccCcccCCCCCCCEEEccCCCCcc
Q 015671          308 NLQRLPECLGQLSSPITLGLTETNIER  334 (403)
Q Consensus       308 ~~~~~~~~l~~l~~L~~L~l~~~~l~~  334 (403)
                      +.+..+..+..+++|+.|++++|.++.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            877666678899999999999998873

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.14  E-value=1.4e-10  Score=106.35  Aligned_cols=231  Identities=11%  Similarity=0.043  Sum_probs=138.4

Q ss_pred             CCeeEEEecCCC----CCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCC-----
Q 015671          131 AEVKYLHWHGYP----LKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPR-----  201 (403)
Q Consensus       131 ~~L~~L~l~~~~----~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-----  201 (403)
                      .+++.|.++|.-    +..++.  .+++|++|||++|.+..+....+.++.++.+....+     .++. ..+.+     
T Consensus        25 ~~l~~L~l~g~i~~~~~~~l~~--~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~-----~I~~-~aF~~~~~~~   96 (329)
T 3sb4_A           25 NSITHLTLTGKLNAEDFRHLRD--EFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN-----FVPA-YAFSNVVNGV   96 (329)
T ss_dssp             HHCSEEEEEEEECHHHHHHHHH--SCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT-----EECT-TTTEEEETTE
T ss_pred             CceeEEEEeccccHHHHHHHHH--hhccCeEEecCcceeEEecCcccccccccccccccc-----ccCH-HHhccccccc
Confidence            668888887642    111111  167899999999888733222222333455555544     4443 45677     


Q ss_pred             ---CCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecCcc----CcccC-hhhhC
Q 015671          202 ---LNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTA----IKELP-SSIES  270 (403)
Q Consensus       202 ---l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~----~~~l~-~~~~~  270 (403)
                         +++|+.+++.. .+...-+..|.++++|+.+++..|... .++...+   .++..+......    ...+. ..+..
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               89999999988 544333456889999999999986544 3333333   333333333211    01111 11122


Q ss_pred             CCCCC--------------------------EEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCE
Q 015671          271 LLRLE--------------------------YLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPIT  324 (403)
Q Consensus       271 l~~L~--------------------------~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  324 (403)
                      +..|+                          .+.+.++-...........+++|+.+++++|.+....+.+|.++++|+.
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            23333                          3322221100000000113789999999998776666678999999999


Q ss_pred             EEccCCCCcccCh-hhhcCCCCC-EEeccCCcCCCcCCCCeEeccCCCCCCCch
Q 015671          325 LGLTETNIERIPE-SIIQHFVLR-YLLLSYSERLQSLPSPLFLARGCLAMQPFL  376 (403)
Q Consensus       325 L~l~~~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~lp~~~l~i~~c~~l~~~~  376 (403)
                      +++.++ ++.++. .+..+++|+ .+++.+  .++.++...  ..+|++|+.+.
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a--F~~c~~L~~l~  303 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA--FMGCDNLRYVL  303 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT--TTTCTTEEEEE
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhh--hhCCccCCEEE
Confidence            999998 776654 578999999 999987  567777631  46788888744

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=4.2e-10  Score=93.03  Aligned_cols=107  Identities=19%  Similarity=0.171  Sum_probs=77.0

Q ss_pred             CEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCC
Q 015671          230 TKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSN  308 (403)
Q Consensus       230 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  308 (403)
                      +.++++++ .++.+|.....+|+.|++++|.++.+ |..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus        15 ~~l~~~~n-~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNI-RLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCC-CCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            34555442 23444444445666666666777766 45678889999999999986664444567899999999999887


Q ss_pred             CcccCcccCCCCCCCEEEccCCCCcccCh
Q 015671          309 LQRLPECLGQLSSPITLGLTETNIERIPE  337 (403)
Q Consensus       309 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~  337 (403)
                      .+..+..+..+++|+.|++++|.+...+.
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            76655568889999999999998885543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.10  E-value=1.2e-12  Score=111.00  Aligned_cols=133  Identities=20%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             ccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCc
Q 015671          165 IEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP  244 (403)
Q Consensus       165 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  244 (403)
                      ++.+|..+..+++|++|++++| .+. .+|   .+.++++|+.|++++|.+. .+|..+..+++|+.|++++        
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n-~l~-~l~---~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~--------  102 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTN-NIE-KIS---SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISY--------  102 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEE-EES-CCC---CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEE--------
T ss_pred             HhhhhHHHhcCCCCCEEECCCC-CCc-ccc---ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcC--------
Confidence            3344445555555555555555 222 222   3444455555555554432 3343333344555555554        


Q ss_pred             ccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCC-ccccCCCCCcEEeecCCCCCcccCc---------
Q 015671          245 EISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYGCSNLQRLPE---------  314 (403)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~---------  314 (403)
                                    |.++.+| .+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+.+|.         
T Consensus       103 --------------N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  167 (198)
T 1ds9_A          103 --------------NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI  167 (198)
T ss_dssp             --------------EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred             --------------CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence                          3333333 34444555555555554332111 2344555555555555544443332         


Q ss_pred             -ccCCCCCCCEEE
Q 015671          315 -CLGQLSSPITLG  326 (403)
Q Consensus       315 -~l~~l~~L~~L~  326 (403)
                       .+..+++|+.|+
T Consensus       168 ~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          168 EVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHCSSCSEEC
T ss_pred             HHHHhCCCcEEEC
Confidence             144555666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.10  E-value=8.3e-09  Score=96.93  Aligned_cols=236  Identities=9%  Similarity=0.087  Sum_probs=149.5

Q ss_pred             hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCccccccc
Q 015671           95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQLWDC  171 (403)
Q Consensus        95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~l~~~  171 (403)
                      ..+|..+ +|+.+.+..+ +       ..+...... .+|+.+.+.. .++.++.. | .+.+|+.+++..+.++.++..
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i-------~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~  198 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-L-------KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS  198 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-C-------CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred             HhhcccC-CccEEEeCCC-c-------cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence            4567664 6888877654 2       233333333 6688888865 66666533 3 678888888888888887754


Q ss_pred             cccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCccccc--
Q 015671          172 VKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISS--  248 (403)
Q Consensus       172 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~--  248 (403)
                      .-.+.+|+.+.+..+  +. .++. ..+.++++|+.+.+..+  ...++ ..+.+ .+|+.+.+..  .+..++...+  
T Consensus       199 aF~~~~L~~l~lp~~--l~-~I~~-~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~  269 (401)
T 4fdw_A          199 TFVYAGIEEVLLPVT--LK-EIGS-QAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYY  269 (401)
T ss_dssp             TTTTCCCSEEECCTT--CC-EECT-TTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTT
T ss_pred             hEeecccCEEEeCCc--hh-eehh-hHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhC
Confidence            444688888888753  33 4442 46778888888888763  33443 33444 6788888853  2344443333  


Q ss_pred             -CCCcEEEecCccCc-----ccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCC
Q 015671          249 -GNISWLFLTGTAIK-----ELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSS  321 (403)
Q Consensus       249 -~~L~~L~l~~~~~~-----~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  321 (403)
                       .+|+.+.+.++.+.     .++ ..+..+++|+.+.+.. .+...-...|.++++|+.+.+..+ ....-..+|.++ +
T Consensus       270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G  346 (401)
T ss_dssp             CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred             CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence             78888888776554     344 4567788888888874 333333345677888888888653 333344567777 8


Q ss_pred             CCEEEccCCCCcccCh-hhhcCC-CCCEEeccC
Q 015671          322 PITLGLTETNIERIPE-SIIQHF-VLRYLLLSY  352 (403)
Q Consensus       322 L~~L~l~~~~l~~l~~-~~~~~~-~L~~L~l~~  352 (403)
                      |+.+.+.++.+..++. .+..++ .++.|.+..
T Consensus       347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             CCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            8888888887765543 334442 455565544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=1e-09  Score=101.29  Aligned_cols=101  Identities=18%  Similarity=0.120  Sum_probs=68.9

Q ss_pred             EEeecCCCCCCCCccccc--CCCcEEEecC-ccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCC
Q 015671          231 KLDLSGCSKLKRLPEISS--GNISWLFLTG-TAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGC  306 (403)
Q Consensus       231 ~L~l~~~~~~~~~~~~~~--~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  306 (403)
                      .++.++++.+..+|. +.  .+|+.|+|++ |.++.++ ..+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            356666435666776 43  6677777775 7777776 35677777777777777766666666777777777777777


Q ss_pred             CCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          307 SNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       307 ~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      .+.+..+..+..++ |+.|++.+|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            76654444444444 777777777766

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.98  E-value=4.4e-11  Score=111.35  Aligned_cols=85  Identities=19%  Similarity=0.128  Sum_probs=46.5

Q ss_pred             CCCCCEEecccCcCCC----cCCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc-----ccCh
Q 015671          271 LLRLEYLDLSDCKRLK----SLPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE-----RIPE  337 (403)
Q Consensus       271 l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~-----~l~~  337 (403)
                      .++|+.|++++|.+..    .++..+..+++|+.|+|++|.+...    ++..+...++|+.|++++|.++     .+..
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            4566666666665432    1223334556666666666654432    2344455566666666666665     2333


Q ss_pred             hhhcCCCCCEEeccCCcC
Q 015671          338 SIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       338 ~~~~~~~L~~L~l~~c~~  355 (403)
                      .+...++|++|++++|+.
T Consensus       234 ~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          234 AAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHCSSCCEEECTTSSC
T ss_pred             HHHhCCCCCEEeccCCCC
Confidence            444556666666666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.86  E-value=6.2e-11  Score=110.38  Aligned_cols=70  Identities=17%  Similarity=0.060  Sum_probs=42.5

Q ss_pred             cChhhhCCCCCCEEecccCcCCCc----CCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc
Q 015671          264 LPSSIESLLRLEYLDLSDCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       264 l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      ++..+...++|++|++++|.+...    ++..+...++|+.|+|++|.+...    +...+...++|+.|++++|.++
T Consensus       175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            334445666677777777664431    233445566777777777766542    3334445677777777777776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.75  E-value=4e-08  Score=90.62  Aligned_cols=103  Identities=21%  Similarity=0.114  Sum_probs=72.1

Q ss_pred             EEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcc-ccc--CCCcEEEecCccCcccCh-hhhCCCCCCEEecccC
Q 015671          207 ILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPE-ISS--GNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDC  282 (403)
Q Consensus       207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~--~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~  282 (403)
                      .++++++.....+|. +..+++|+.|++++++.++.++. .+.  ++|+.|+|++|.++.+++ .+..+++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            456666523556787 88888888888886344455543 333  888888888888887764 5688888888888888


Q ss_pred             cCCCcCCccccCCCCCcEEeecCCCCCcc
Q 015671          283 KRLKSLPSSLCKLKSLGVLNLYGCSNLQR  311 (403)
Q Consensus       283 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  311 (403)
                      .+.+..+..+..++ |+.|++.+|.+...
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            86654444444444 88888888876543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=9.8e-09  Score=94.82  Aligned_cols=61  Identities=11%  Similarity=0.211  Sum_probs=36.2

Q ss_pred             CCCCCcEEeecCCCCCcccCccc---CCCCCCCEEEccCCCCcc-----cChhhhcCCCCCEEeccCCc
Q 015671          294 KLKSLGVLNLYGCSNLQRLPECL---GQLSSPITLGLTETNIER-----IPESIIQHFVLRYLLLSYSE  354 (403)
Q Consensus       294 ~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~c~  354 (403)
                      .+++|+.|++.+|.+....+..+   ..+++|+.|+|+.|.+..     ++..+..+++|+.|++++|.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            35677777777666543322122   245677777777777662     33344556777777777764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.59  E-value=4.5e-06  Score=78.24  Aligned_cols=261  Identities=13%  Similarity=0.109  Sum_probs=132.8

Q ss_pred             eecChhhhcCCCCCcEEEEeccCCCCCCcccccccC-CCCC-CCeeEEEecCCCCCCCCCCC--CCCCceEEEccCC---
Q 015671           91 FRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQ-DPGF-AEVKYLHWHGYPLKSFPSNL--SAEKLVLFEVPEN---  163 (403)
Q Consensus        91 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~-~~L~~L~l~~~~~~~lp~~~--~l~~L~~L~l~~~---  163 (403)
                      ..+...+|.++.+|+.+.+..+ +       ..+.. .+.. .+|+.+++..+ ++.++...  .+..|+.+.+..+   
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~~-i-------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~  130 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPST-V-------REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKS  130 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCTT-C-------CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCE
T ss_pred             eEhHHHHhhCCCCceEEEeCCC-c-------cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceee
Confidence            3456677888888888887542 2       23332 2333 77888877542 44443322  3455554444322   


Q ss_pred             ------------------Ccccc-ccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCC
Q 015671          164 ------------------DIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF  224 (403)
Q Consensus       164 ------------------~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  224 (403)
                                        .+..+ ...+..+.+|+.+.+.++.  . .++ ...+.++.+|+.+.+..+ ....-...+.
T Consensus       131 i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~--~-~I~-~~~F~~c~~L~~i~l~~~-~~~I~~~~F~  205 (394)
T 4fs7_A          131 IGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM--E-TLH-NGLFSGCGKLKSIKLPRN-LKIIRDYCFA  205 (394)
T ss_dssp             ECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC--C-EEC-TTTTTTCTTCCBCCCCTT-CCEECTTTTT
T ss_pred             ecceeeecccccccccCccccccchhhhcccCCCcEEecCCcc--c-eec-cccccCCCCceEEEcCCC-ceEeCchhhc
Confidence                              01111 1345566777777775531  1 222 235566666676666543 1111123344


Q ss_pred             CCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCC----------------
Q 015671          225 NLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRL----------------  285 (403)
Q Consensus       225 ~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~----------------  285 (403)
                      ++..|+.+.+..+..  .+.....  .+|+.+.+... ++.+. ..+..+..++.+.+..+...                
T Consensus       206 ~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~  282 (394)
T 4fs7_A          206 ECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVI  282 (394)
T ss_dssp             TCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEE
T ss_pred             cccccceeecCCCce--EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceec
Confidence            555555554433211  0111111  44444444321 11111 12233344444443322100                


Q ss_pred             ---CcCC-ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC-hhhhcCCCCCEEeccCCcCCCcCC
Q 015671          286 ---KSLP-SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP-ESIIQHFVLRYLLLSYSERLQSLP  360 (403)
Q Consensus       286 ---~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp  360 (403)
                         ..++ ..+..+.+|+.+.+..+ ....-..+|.++++|+.+.+..+ ++.+. ..+..|++|+.+.+..+  ++.++
T Consensus       283 ~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~  358 (394)
T 4fs7_A          283 YGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIG  358 (394)
T ss_dssp             ECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEEC
T ss_pred             cCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEeh
Confidence               0011 23456777888877653 32223456778888888888643 66554 35678888998888755  56666


Q ss_pred             CCeEeccCCCCCCC
Q 015671          361 SPLFLARGCLAMQP  374 (403)
Q Consensus       361 ~~~l~i~~c~~l~~  374 (403)
                      ...  ..+|.+|+.
T Consensus       359 ~~a--F~~C~~L~~  370 (394)
T 4fs7_A          359 ANA--FQGCINLKK  370 (394)
T ss_dssp             TTT--BTTCTTCCE
T ss_pred             HHH--hhCCCCCCE
Confidence            632  478888887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.59  E-value=2.2e-08  Score=92.49  Aligned_cols=164  Identities=12%  Similarity=0.102  Sum_probs=95.4

Q ss_pred             cccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCC--CCCCCCEEeecCCCC-CCCCc
Q 015671          168 LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIF--NLEFLTKLDLSGCSK-LKRLP  244 (403)
Q Consensus       168 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~-~~~~~  244 (403)
                      +...+..+++|+.|.++++..+  .++   .+ .+++|++|++..|.+.......++  .+++|+.|+++.+.. ...  
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l--~l~---~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~--  235 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL--SIG---KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF--  235 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC--BCC---SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC--
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc--eec---cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc--
Confidence            4455667788888888876322  222   22 267888888887664433222232  678888888753211 000  


Q ss_pred             ccccCCCcEEEecCccCcccChhh--hCCCCCCEEecccCcCCCcCCccc---cCCCCCcEEeecCCCCCcc----cCcc
Q 015671          245 EISSGNISWLFLTGTAIKELPSSI--ESLLRLEYLDLSDCKRLKSLPSSL---CKLKSLGVLNLYGCSNLQR----LPEC  315 (403)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~----~~~~  315 (403)
                                   +..+..+...+  ..+++|+.|++.+|.+....+..+   ..+++|+.|+|+.|.+.+.    ++..
T Consensus       236 -------------~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~  302 (362)
T 2ra8_A          236 -------------DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH  302 (362)
T ss_dssp             -------------CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred             -------------chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh
Confidence                         00111111112  356788888888877553222211   2478899999988776553    3334


Q ss_pred             cCCCCCCCEEEccCCCCc-ccChhhhc-CCCCCEEeccCCc
Q 015671          316 LGQLSSPITLGLTETNIE-RIPESIIQ-HFVLRYLLLSYSE  354 (403)
Q Consensus       316 l~~l~~L~~L~l~~~~l~-~l~~~~~~-~~~L~~L~l~~c~  354 (403)
                      +..+++|+.|++++|.++ .....+.. +  ...+++++++
T Consensus       303 L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          303 VDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            456788999999988877 22222322 2  4567887765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.38  E-value=1e-05  Score=75.72  Aligned_cols=223  Identities=11%  Similarity=0.078  Sum_probs=136.7

Q ss_pred             CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          131 AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      .+|+.+.+..+ +..++.. + .+.+|+.+++..+ ++.++ ..+.++..|+.+.+..+..   .+..  ......+|+.
T Consensus       162 ~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~---~i~~--~~~~~~~l~~  234 (394)
T 4fs7_A          162 ESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY---YLGD--FALSKTGVKN  234 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC---EECT--TTTTTCCCCE
T ss_pred             CCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce---Eeeh--hhcccCCCce
Confidence            77888888643 4445433 3 5778888888665 44443 4667788888887766422   2221  2334467788


Q ss_pred             EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecCccCcccChhhhCCCCCCEEecccCcC
Q 015671          208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKR  284 (403)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~  284 (403)
                      +.+... ....-...+.++.+|+.+.+..+.  ..+.....   ..++.+.+....+.  ...+..+.+|+.+.+..+  
T Consensus       235 i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--  307 (394)
T 4fs7_A          235 IIIPDS-FTELGKSVFYGCTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--  307 (394)
T ss_dssp             EEECTT-CCEECSSTTTTCSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--
T ss_pred             EEECCC-ceecccccccccccceeEEcCCCc--ceeeccccccccccceeccCceeec--cccccccccccccccccc--
Confidence            877652 222223445677888888886532  12222221   56666665543322  124567788888888754  


Q ss_pred             CCcC-CccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC-hhhhcCCCCCEEeccCCcCCCcCCCC
Q 015671          285 LKSL-PSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP-ESIIQHFVLRYLLLSYSERLQSLPSP  362 (403)
Q Consensus       285 ~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp~~  362 (403)
                      ...+ ...|.++.+|+.+.+.. .....-..+|.++++|+.+.+..+ ++.+. ..+..|++|+.+++..+  ++.+.. 
T Consensus       308 i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~-  382 (394)
T 4fs7_A          308 VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYRY-  382 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGGG-
T ss_pred             cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhhh-
Confidence            2333 34577888999999875 333333457888999999998766 66554 35788899999988754  233321 


Q ss_pred             eEeccCCCCCCC
Q 015671          363 LFLARGCLAMQP  374 (403)
Q Consensus       363 ~l~i~~c~~l~~  374 (403)
                        ...+|.+|+.
T Consensus       383 --~F~~c~~L~~  392 (394)
T 4fs7_A          383 --DFEDTTKFKW  392 (394)
T ss_dssp             --GBCTTCEEEE
T ss_pred             --eecCCCCCcE
Confidence              3567777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.32  E-value=0.00026  Score=65.69  Aligned_cols=63  Identities=14%  Similarity=0.131  Sum_probs=36.9

Q ss_pred             ecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCceEEEccCC
Q 015671           92 RLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNL-SAEKLVLFEVPEN  163 (403)
Q Consensus        92 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~  163 (403)
                      .+...+|.++.+|+.+.+..+ +       ..+...... ..|..+.+.. .++.++... ...+|+.+.+..+
T Consensus        59 ~Ig~~aF~~C~~L~~I~lp~~-v-------~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~  123 (379)
T 4h09_A           59 SIGEANFNSCYNMTKVTVAST-V-------TSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA  123 (379)
T ss_dssp             EECTTTTTTCTTCCEEEECTT-C-------CEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCTT
T ss_pred             ChHHHHhhCCCCCCEEEeCCc-c-------eEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCCc
Confidence            455678899999999988653 2       233333333 5566666543 345554332 3446777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.31  E-value=9.2e-05  Score=69.23  Aligned_cols=100  Identities=13%  Similarity=0.165  Sum_probs=43.9

Q ss_pred             hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC-hhhhcCCCCC
Q 015671          268 IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP-ESIIQHFVLR  346 (403)
Q Consensus       268 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~  346 (403)
                      +..+..|+.+.+..+. ...-...+.+++.|+.+.+.. ........+|.++.+|+.+.+..+ ++.+. ..+..|.+|+
T Consensus       261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            3445556666554321 111122344555555555542 222222234555555555555432 33332 2344555555


Q ss_pred             EEeccCCcCCCcCCCCeEeccCCCCCCC
Q 015671          347 YLLLSYSERLQSLPSPLFLARGCLAMQP  374 (403)
Q Consensus       347 ~L~l~~c~~l~~lp~~~l~i~~c~~l~~  374 (403)
                      .+.|..+  ++.++..  ...+|.+|+.
T Consensus       338 ~i~ip~s--v~~I~~~--aF~~C~~L~~  361 (394)
T 4gt6_A          338 RIAIPSS--VTKIPES--AFSNCTALNN  361 (394)
T ss_dssp             EEEECTT--CCBCCGG--GGTTCTTCCE
T ss_pred             EEEECcc--cCEEhHh--HhhCCCCCCE
Confidence            5555432  3333331  1245555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=4.8e-07  Score=75.28  Aligned_cols=116  Identities=15%  Similarity=0.127  Sum_probs=74.2

Q ss_pred             CCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCc----CCccccCCCCC
Q 015671          223 IFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKS----LPSSLCKLKSL  298 (403)
Q Consensus       223 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L  298 (403)
                      +...++|++|++++|..++.                .....+...+...+.|++|++++|.+...    +...+...++|
T Consensus        32 l~~~~~L~~L~L~~n~~i~~----------------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L   95 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPV----------------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL   95 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCH----------------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC
T ss_pred             HhcCCCCCEEEecCCCCCCH----------------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCc
Confidence            44566677777766522211                11123444556667788888888775432    23334455778


Q ss_pred             cEEeecCCCCCcc----cCcccCCCCCCCEEEc--cCCCCc-----ccChhhhcCCCCCEEeccCCc
Q 015671          299 GVLNLYGCSNLQR----LPECLGQLSSPITLGL--TETNIE-----RIPESIIQHFVLRYLLLSYSE  354 (403)
Q Consensus       299 ~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l--~~~~l~-----~l~~~~~~~~~L~~L~l~~c~  354 (403)
                      +.|+|++|.+...    +...+...++|+.|++  ++|.+.     .+...+...++|++|++++|.
T Consensus        96 ~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            8888888776543    4456667778888888  778887     245556677888888888875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.23  E-value=0.00026  Score=66.09  Aligned_cols=117  Identities=13%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCC-ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671          249 GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL  327 (403)
Q Consensus       249 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  327 (403)
                      ..|+.+.+..+..+--...+..++.|+.+.+.. . ...++ ..|.++.+|+.+.+..+ ....-..+|.++.+|+.+.+
T Consensus       265 ~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          265 AYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccEEecccccceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            445555554332221123456788899998864 3 33333 45778899999999763 33333457889999999999


Q ss_pred             cCCCCcccC-hhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCCCCc
Q 015671          328 TETNIERIP-ESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPF  375 (403)
Q Consensus       328 ~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l~~~  375 (403)
                      ..+ ++.+. ..+..|++|+.+++.++....      -....|..|+.+
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~------~~~~~~~~L~~i  383 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQW------NAISTDSGLQNL  383 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCHHHH------HTCBCCCCC---
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCceeeh------hhhhccCCCCEE
Confidence            654 66664 357889999999998764221      123567777763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.21  E-value=7.8e-07  Score=72.47  Aligned_cols=84  Identities=20%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             CCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCc-ccCcccCCC----CCCCEEEccCC-CCc--ccChhhhcCC
Q 015671          272 LRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQ-RLPECLGQL----SSPITLGLTET-NIE--RIPESIIQHF  343 (403)
Q Consensus       272 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l----~~L~~L~l~~~-~l~--~l~~~~~~~~  343 (403)
                      ..|+.|++++|.++..-...+..+++|+.|+|++|..++ .....+..+    ++|++|++++| .++  .+. .+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence            356777777766444333345567777777777775333 222233332    35777777777 366  332 355677


Q ss_pred             CCCEEeccCCcCC
Q 015671          344 VLRYLLLSYSERL  356 (403)
Q Consensus       344 ~L~~L~l~~c~~l  356 (403)
                      +|++|++++|+.+
T Consensus       140 ~L~~L~L~~c~~I  152 (176)
T 3e4g_A          140 NLKYLFLSDLPGV  152 (176)
T ss_dssp             TCCEEEEESCTTC
T ss_pred             CCCEEECCCCCCC
Confidence            7777777777544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.01  E-value=9.7e-07  Score=73.43  Aligned_cols=116  Identities=14%  Similarity=0.069  Sum_probs=62.5

Q ss_pred             CCCCCcEEEecCC-CCCCc----cCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCC
Q 015671          201 RLNKVVILNLRGS-KSLKS----LPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLE  275 (403)
Q Consensus       201 ~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~  275 (403)
                      ..+.|++|++++| .+...    +...+...++|++|++++|....                 .....+...+...+.|+
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~-----------------~g~~~l~~~L~~n~~L~   96 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-----------------PVAFALAEMLKVNNTLK   96 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-----------------HHHHHHHHHHHHCSSCC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh-----------------HHHHHHHHHHHhCCCcC
Confidence            3455666666665 43221    23334455667777776654211                 11112333444555666


Q ss_pred             EEecccCcCCCc----CCccccCCCCCcEEee--cCCCCCcc----cCcccCCCCCCCEEEccCCCCc
Q 015671          276 YLDLSDCKRLKS----LPSSLCKLKSLGVLNL--YGCSNLQR----LPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       276 ~L~l~~~~~~~~----~~~~~~~l~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      +|++++|.+...    +...+...++|+.|++  ++|.+...    +...+...++|+.|++++|.+.
T Consensus        97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            666666664432    2334455667777777  66665443    3344555677888888877765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=2.1e-06  Score=69.96  Aligned_cols=88  Identities=14%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             CCceEEEccCCCcccc-ccccccCCCCcEeecccccCccccCCCCCCCCCC----CCCcEEEecCCCCCCc-cCccCCCC
Q 015671          153 EKLVLFEVPENDIEQL-WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRL----NKVVILNLRGSKSLKS-LPSEIFNL  226 (403)
Q Consensus       153 ~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~-~~~~~~~l  226 (403)
                      .+|++||++++.++.. ...+..+++|++|++++|..++ .- .+..+..+    ++|++|++++|..+.+ --..+..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC-HH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            4566666666665532 2345678888888888886443 11 11223332    3688888888764432 22335678


Q ss_pred             CCCCEEeecCCCCCCC
Q 015671          227 EFLTKLDLSGCSKLKR  242 (403)
Q Consensus       227 ~~L~~L~l~~~~~~~~  242 (403)
                      ++|+.|++++|..++.
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            8888888888876654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.87  E-value=1.6e-05  Score=69.73  Aligned_cols=80  Identities=21%  Similarity=0.130  Sum_probs=49.3

Q ss_pred             hCCCCCCEEecccCcCCC--cCCccccCCCCCcEEeecCCCCCcc-cCcccCCCCCCCEEEccCCCCc-ccC-------h
Q 015671          269 ESLLRLEYLDLSDCKRLK--SLPSSLCKLKSLGVLNLYGCSNLQR-LPECLGQLSSPITLGLTETNIE-RIP-------E  337 (403)
Q Consensus       269 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~-~l~-------~  337 (403)
                      ..+++|+.|++++|.+.+  .+|..+..+++|+.|+|++|.+.+. -...+..+ +|++|++++|.+. .+|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            456777777777777655  3445555677777777777666543 11223333 6777777777776 343       2


Q ss_pred             hhhcCCCCCEEe
Q 015671          338 SIIQHFVLRYLL  349 (403)
Q Consensus       338 ~~~~~~~L~~L~  349 (403)
                      .+..+|+|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            356677777776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.59  E-value=6.5e-05  Score=65.77  Aligned_cols=82  Identities=11%  Similarity=0.051  Sum_probs=64.5

Q ss_pred             cCCCCCcEEeecCCCCCc--ccCcccCCCCCCCEEEccCCCCcccChhhhcCC--CCCEEeccCCcCCCcCCCC----eE
Q 015671          293 CKLKSLGVLNLYGCSNLQ--RLPECLGQLSSPITLGLTETNIERIPESIIQHF--VLRYLLLSYSERLQSLPSP----LF  364 (403)
Q Consensus       293 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~--~L~~L~l~~c~~l~~lp~~----~l  364 (403)
                      .++++|+.|+|++|.+.+  .++..+..+++|+.|+|++|.++.+. .+..+.  +|+.|++++|+..+.+|..    ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            468899999999999877  56667778999999999999999763 344444  9999999999988888752    22


Q ss_pred             eccCCCCCCCc
Q 015671          365 LARGCLAMQPF  375 (403)
Q Consensus       365 ~i~~c~~l~~~  375 (403)
                      .+..+|+|+.+
T Consensus       246 il~~~P~L~~L  256 (267)
T 3rw6_A          246 IRERFPKLLRL  256 (267)
T ss_dssp             HHHHCTTCCEE
T ss_pred             HHHHCcccCeE
Confidence            34567777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.53  E-value=0.015  Score=53.55  Aligned_cols=242  Identities=8%  Similarity=0.046  Sum_probs=120.1

Q ss_pred             cChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-CCCCCceEEEccCCCcccc-c
Q 015671           93 LNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-LSAEKLVLFEVPENDIEQL-W  169 (403)
Q Consensus        93 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-~~l~~L~~L~l~~~~~~~l-~  169 (403)
                      +...+|..+ +|+.+.+-.+-        ..+...... .+|+.+.+.+. +..+... +....|..+.+..+ ++.+ .
T Consensus        83 Ig~~aF~~c-~l~~i~~~~~l--------~~I~~~aF~~~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~  151 (379)
T 4h09_A           83 IGDGAFADT-KLQSYTGMERV--------KKFGDYVFQGTDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKD  151 (379)
T ss_dssp             ECTTTTTTC-CCCEEEECTTC--------CEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CCEECS
T ss_pred             echhhhcCC-CCceEECCcee--------eEeccceeccCCcccccCCCc-cccccccccccceeeeeeccce-eecccc
Confidence            445677776 57777664421        233333333 67888887653 3333322 23335555555433 2222 2


Q ss_pred             cccccCCCCcEeecccccCcccc---------CCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCC
Q 015671          170 DCVKHYSKLNQIIHAVCHRLIAK---------TPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKL  240 (403)
Q Consensus       170 ~~~~~l~~L~~L~l~~~~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  240 (403)
                      ..+..+.+++.+.+.........         ......+.....+..+.+... ........+..+.+|+.+.+..+  +
T Consensus       152 ~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~  228 (379)
T 4h09_A          152 GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--V  228 (379)
T ss_dssp             CTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--C
T ss_pred             chhcccccccccccccccceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc--e
Confidence            34455666666655433211000         000012223344444444331 11122233445566666666432  2


Q ss_pred             CCCccccc---CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCC-ccccCCCCCcEEeecCCCCCcccCcc
Q 015671          241 KRLPEISS---GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYGCSNLQRLPEC  315 (403)
Q Consensus       241 ~~~~~~~~---~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~  315 (403)
                      ..+.....   ..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+  ...++ ..+..+++|+.+.+.++.+...-..+
T Consensus       229 ~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a  305 (379)
T 4h09_A          229 TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV  305 (379)
T ss_dssp             CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred             eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhh
Confidence            22222111   55666666543 33343 23456677777777543  22222 34566777888877765444444456


Q ss_pred             cCCCCCCCEEEccCCCCcccCh-hhhcCCCCCEEeccC
Q 015671          316 LGQLSSPITLGLTETNIERIPE-SIIQHFVLRYLLLSY  352 (403)
Q Consensus       316 l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~  352 (403)
                      |.++.+|+.+.+..+ ++.+.. .+..|++|+.+.+..
T Consensus       306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            777788888877543 554443 456677777777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.92  E-value=0.00076  Score=55.84  Aligned_cols=90  Identities=16%  Similarity=0.052  Sum_probs=54.7

Q ss_pred             cChhhhCCCCCCEEecccCcCCC----cCCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCC---CC
Q 015671          264 LPSSIESLLRLEYLDLSDCKRLK----SLPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTET---NI  332 (403)
Q Consensus       264 l~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~---~l  332 (403)
                      +...+..-+.|+.|++++|.+..    .+...+..-+.|+.|+|++|.+...    +.+.+..-+.|+.|+|+++   .+
T Consensus        62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i  141 (197)
T 1pgv_A           62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  141 (197)
T ss_dssp             HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence            34445556677777777776542    2222344456777888877776543    3345666667888888754   33


Q ss_pred             c-----ccChhhhcCCCCCEEeccCC
Q 015671          333 E-----RIPESIIQHFVLRYLLLSYS  353 (403)
Q Consensus       333 ~-----~l~~~~~~~~~L~~L~l~~c  353 (403)
                      .     .+...+..-+.|+.|+++.|
T Consensus       142 g~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          142 GNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             CHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            3     23444566677888877655

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.51  E-value=0.00047  Score=67.36  Aligned_cols=38  Identities=8%  Similarity=0.260  Sum_probs=33.1

Q ss_pred             cchHhhhcCccEEEcc---CCeEEccHHHHHHHHHHHhhhc
Q 015671           13 IGISVLVDKSLIVVGS---YNKIRMHDLLQELGREIVRQES   50 (403)
Q Consensus        13 ~~~~~Lv~~sl~~~~~---~~~~~mHdll~dla~~~~~~e~   50 (403)
                      .||++|++|||++...   ..+|+|||+|||+|++++.+++
T Consensus       432 ~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          432 DRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             HHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             HHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            4899999999999764   2479999999999999888775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.40  E-value=0.0097  Score=49.20  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=64.0

Q ss_pred             hhCCCCCCEEecccC-cCCC----cCCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc-----
Q 015671          268 IESLLRLEYLDLSDC-KRLK----SLPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE-----  333 (403)
Q Consensus       268 ~~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~-----  333 (403)
                      +..-+.|+.|+++++ .+..    .+...+..-+.|+.|+|++|.+...    +.+.+..-+.|+.|+|+.|.|.     
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            455678999999875 4322    2334456678999999999987643    4445566789999999999998     


Q ss_pred             ccChhhhcCCCCCEEeccCC
Q 015671          334 RIPESIIQHFVLRYLLLSYS  353 (403)
Q Consensus       334 ~l~~~~~~~~~L~~L~l~~c  353 (403)
                      .+-..+..-+.|++|++++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence            34455666678999999875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.65  E-value=0.054  Score=41.49  Aligned_cols=6  Identities=67%  Similarity=0.717  Sum_probs=2.1

Q ss_pred             EEEecC
Q 015671          253 WLFLTG  258 (403)
Q Consensus       253 ~L~l~~  258 (403)
                      .|+|++
T Consensus        35 ~L~Ls~   40 (130)
T 3rfe_A           35 ELVLTG   40 (130)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            333333

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.56  E-value=0.0086  Score=64.32  Aligned_cols=46  Identities=22%  Similarity=0.158  Sum_probs=37.8

Q ss_pred             ccccCCCcccchHhhhcCccEEEccCC---eEEccHHHHHHHHHHHhhh
Q 015671            4 HNASGFYPEIGISVLVDKSLIVVGSYN---KIRMHDLLQELGREIVRQE   49 (403)
Q Consensus         4 ~~~~~~~~~~~~~~Lv~~sl~~~~~~~---~~~mHdll~dla~~~~~~e   49 (403)
                      |.+.+..++.++++|+++||++...++   +|+|||++|++|++.+.++
T Consensus       404 ~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          404 WDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             hCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            444456778899999999999987655   4999999999999887665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.53  E-value=0.081  Score=40.48  Aligned_cols=55  Identities=16%  Similarity=0.070  Sum_probs=34.8

Q ss_pred             EEEecCccCc--ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671          253 WLFLTGTAIK--ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL  309 (403)
Q Consensus       253 ~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  309 (403)
                      .++.+++.++  .+|..+  .++|+.|+|++|.+...-+..+..+++|+.|+|.+|+..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3444455555  666432  246788888887765544445667778888888877654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=87.01  E-value=0.16  Score=49.76  Aligned_cols=37  Identities=24%  Similarity=0.178  Sum_probs=30.7

Q ss_pred             CCcccchHhhhcCccEEEccC---CeEEccHHHHHHHHHH
Q 015671            9 FYPEIGISVLVDKSLIVVGSY---NKIRMHDLLQELGREI   45 (403)
Q Consensus         9 ~~~~~~~~~Lv~~sl~~~~~~---~~~~mHdll~dla~~~   45 (403)
                      ..++.++++|+++||++...+   ..|+|||++|+++...
T Consensus       409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~  448 (591)
T 1z6t_A          409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK  448 (591)
T ss_dssp             HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence            356779999999999986542   3799999999999876

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=85.87  E-value=0.14  Score=53.04  Aligned_cols=34  Identities=18%  Similarity=0.107  Sum_probs=29.1

Q ss_pred             CcccchHhhhcCccEEEcc-CCeEEccHHHHHHHH
Q 015671           10 YPEIGISVLVDKSLIVVGS-YNKIRMHDLLQELGR   43 (403)
Q Consensus        10 ~~~~~~~~Lv~~sl~~~~~-~~~~~mHdll~dla~   43 (403)
                      .++.++++|+++||++... .++|+||||++|++.
T Consensus       403 dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence            4778999999999999863 568999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 230 TKLDLSGCSKL-KRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCK-RLKS 287
             LDL+G +        + S  +       + + +  +   S  R++++DLS+    + +
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 288 LPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSS 321
           L   L +   L  L+L G      +   L + S+
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 96

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)

Query: 195 NPTLMPRLNKVVILNLRGSKSLKSLPS-EIFNLEFLTKLDLSGCSKLKRLPEISSGNISW 253
           +P +  RL    ++  R  +S    P  E F+   +  +DLS                  
Sbjct: 13  HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE------------- 59

Query: 254 LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLP 313
                  +  L   +    +L+ L L   +    + ++L K  +L  LNL GCS      
Sbjct: 60  -------VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 4/123 (3%)

Query: 239 KLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKS 297
            L+++P+    + + L L    I E+     ++L  L  L L + K  K  P +   L  
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 298 LGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQ 357
           L  L L     L+ LPE + +      L + E  I ++ +S+        ++   +  L+
Sbjct: 81  LERLYLSKN-QLKELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 358 SLP 360
           S  
Sbjct: 138 SSG 140

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 33/256 (12%), Positives = 80/256 (31%), Gaps = 43/256 (16%)

Query: 83  LDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYP 142
           LD+   K   +    F  +  L  L   ++  +  +    + L      +++ L+     
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-----KLERLYLSKNQ 90

Query: 143 LKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRL 202
           LK  P  +      L    EN+I ++   V +      ++    + L +          +
Sbjct: 91  LKELPEKMPKTLQELRV-HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 203 NKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLT----- 257
            K+  + +  +  + ++P  +     LT+L L G    K       G  +   L      
Sbjct: 150 KKLSYIRIADTN-ITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 258 ---------------------GTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSS----- 291
                                   + ++P  +     ++ + L +   + ++ S+     
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP 265

Query: 292 --LCKLKSLGVLNLYG 305
               K  S   ++L+ 
Sbjct: 266 GYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 29/194 (14%), Positives = 65/194 (33%), Gaps = 5/194 (2%)

Query: 205 VVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLTGTAIK 262
             +L+L+ +K  +    +  NL+ L  L L      K  P   +    +  L+L+   +K
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 263 ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSP 322
           ELP  +   L+   +  ++  +++    +      +  L      +          +   
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 323 ITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAMQPFLGIVEHT 382
             + + +TNI  IP+ +     L  L L  + ++  + +        LA           
Sbjct: 153 SYIRIADTNITTIPQGLPPS--LTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 383 HRIPHIDHMLALDW 396
                + +   L  
Sbjct: 210 VDNGSLANTPHLRE 223

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 250 NISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL 309
           ++  L ++   + ELP+      RLE L  S    L  +P     LK    L++     L
Sbjct: 285 SLEELNVSNNKLIELPALPP---RLERLIASFN-HLAEVPELPQNLKQ---LHVEYN-PL 336

Query: 310 QRLPECLGQLSS 321
           +  P+    +  
Sbjct: 337 REFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 169 WDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEF 228
                 +S L+++   + +   +     +L      +  LN+  +K L  LP+    LE 
Sbjct: 250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLE- 307

Query: 229 LTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRL 274
             +L  S    L  +PE    N+  L +    ++E P   ES+  L
Sbjct: 308 --RLIASFN-HLAEVPE-LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 274 LEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE 333
           LE L++S+ K L  LP+   +L+    L      +L  +PE    L     L +    + 
Sbjct: 286 LEELNVSNNK-LIELPALPPRLE---RLIASFN-HLAEVPELPQNLK---QLHVEYNPLR 337

Query: 334 RIPESI 339
             P+  
Sbjct: 338 EFPDIP 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 13/171 (7%)

Query: 134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKT 193
             L  +G  LK   +  S   L   ++  N I  L             +    +++   +
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK--LTELKLGANQISNIS 279

Query: 194 PNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNIS 252
           P   L    N  +  N           S I NL+ LT L L     +  +  +SS   + 
Sbjct: 280 PLAGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQ 332

Query: 253 WLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNL 303
            LF     + ++ S + +L  + +L      ++  L   L  L  +  L L
Sbjct: 333 RLFFANNKVSDVSS-LANLTNINWLSAGHN-QISDLT-PLANLTRITQLGL 380

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.37
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.22
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.05
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.86
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.35
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.5

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=2.7e-24  Score=194.89  Aligned_cols=251  Identities=15%  Similarity=0.135  Sum_probs=181.4

Q ss_pred             CCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecC-CCCC-CCCCCC-CCCCceEEEccCCCcccc-ccccccCC
Q 015671          102 PKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLK-SFPSNL-SAEKLVLFEVPENDIEQL-WDCVKHYS  176 (403)
Q Consensus       102 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~-~~~~-~lp~~~-~l~~L~~L~l~~~~~~~l-~~~~~~l~  176 (403)
                      .+++.|+++++.+.|.    ..+|..+.. ++|++|+|++ |.+. .+|..+ ++++|++|++++|++..+ +..+..+.
T Consensus        50 ~~v~~L~L~~~~l~g~----~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~  125 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             EEEEEEECCCCCCCCC----CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchh
Confidence            4677888888877542    346666776 8888888876 4554 677777 688888888888888765 45677788


Q ss_pred             CCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCC-CEEeecCCCCCCCCccccc-CCCcEE
Q 015671          177 KLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFL-TKLDLSGCSKLKRLPEISS-GNISWL  254 (403)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~-~~L~~L  254 (403)
                      +|++++++.|.... .+|  ..+.+++.++.+++++|.+.+.+|..+..+.++ +.++++.|...+..|.... .....+
T Consensus       126 ~L~~l~l~~N~~~~-~~p--~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l  202 (313)
T d1ogqa_         126 TLVTLDFSYNALSG-TLP--PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV  202 (313)
T ss_dssp             TCCEEECCSSEEES-CCC--GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE
T ss_pred             hhcccccccccccc-cCc--hhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88888888874433 444  367778888888888887777778777777665 6777777655555554444 555667


Q ss_pred             EecCccCc-ccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          255 FLTGTAIK-ELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       255 ~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      .+..+... .+|..+..+++++.+++.+|.+.+.+| .++.+++|+.|++++|.+.+.+|++++++++|++|+|++|+++
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            77766655 455666777888888888887666544 4677788888888888888888888888888888888888888


Q ss_pred             -ccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          334 -RIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       334 -~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                       .+|. .+.+++|+.+++++|+.+...|-
T Consensus       282 g~iP~-~~~L~~L~~l~l~~N~~l~g~pl  309 (313)
T d1ogqa_         282 GEIPQ-GGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             EECCC-STTGGGSCGGGTCSSSEEESTTS
T ss_pred             ccCCC-cccCCCCCHHHhCCCccccCCCC
Confidence             6764 56777888888888876665543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=2e-22  Score=182.41  Aligned_cols=237  Identities=17%  Similarity=0.201  Sum_probs=199.0

Q ss_pred             CCeeEEEecCCCCC---CCCCCC-CCCCceEEEccC-CCcc-ccccccccCCCCcEeecccccCccccCCCCCCCCCCCC
Q 015671          131 AEVKYLHWHGYPLK---SFPSNL-SAEKLVLFEVPE-NDIE-QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNK  204 (403)
Q Consensus       131 ~~L~~L~l~~~~~~---~lp~~~-~l~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  204 (403)
                      .+++.|+|+++.+.   .+|..+ ++++|++|++++ |.+. .+|..++++++|++|++++|.... ..+  ..+..++.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~-~~~--~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIP--DFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECC--GGGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc-ccc--ccccchhh
Confidence            57999999999876   578777 799999999986 7887 689999999999999999994322 333  35677899


Q ss_pred             CcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEEEecCccCcc-cChhhhCCCCCCEEecc
Q 015671          205 VVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLTGTAIKE-LPSSIESLLRLEYLDLS  280 (403)
Q Consensus       205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~  280 (403)
                      |+.++++.|.....+|..++.+++|+.+++++|...+.+|....   ..++.+.+++|.++. .|..+..+. ...+++.
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~  205 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            99999999998889999999999999999999888777777655   445889999999884 455566555 4579999


Q ss_pred             cCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc-ccChhhhcCCCCCEEeccCCcCCCcC
Q 015671          281 DCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE-RIPESIIQHFVLRYLLLSYSERLQSL  359 (403)
Q Consensus       281 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l  359 (403)
                      .+...+.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|+++ .+|..++.+++|++|++++|...+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence            999889999999999999999999998877765 5788999999999999999 89999999999999999999998899


Q ss_pred             CCCeEeccCCCCCCCch
Q 015671          360 PSPLFLARGCLAMQPFL  376 (403)
Q Consensus       360 p~~~l~i~~c~~l~~~~  376 (403)
                      |..    ..+.+|+.+.
T Consensus       285 P~~----~~L~~L~~l~  297 (313)
T d1ogqa_         285 PQG----GNLQRFDVSA  297 (313)
T ss_dssp             CCS----TTGGGSCGGG
T ss_pred             CCc----ccCCCCCHHH
Confidence            963    3455555433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=4.1e-20  Score=171.64  Aligned_cols=255  Identities=18%  Similarity=0.185  Sum_probs=126.1

Q ss_pred             ceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCc
Q 015671           77 KIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKL  155 (403)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L  155 (403)
                      +++.+.+....+..+    +.+..+++|++|++++|.+.       .++ .+.. ++|++|++++|.+..++....+++|
T Consensus        45 ~l~~L~l~~~~I~~l----~gl~~L~nL~~L~Ls~N~l~-------~l~-~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L  112 (384)
T d2omza2          45 QVTTLQADRLGIKSI----DGVEYLNNLTQINFSNNQLT-------DIT-PLKNLTKLVDILMNNNQIADITPLANLTNL  112 (384)
T ss_dssp             TCCEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCC-------CCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred             CCCEEECCCCCCCCc----cccccCCCCCEEeCcCCcCC-------CCc-cccCCccccccccccccccccccccccccc
Confidence            455554444433322    34667888888888888764       222 2455 7888888888888777655578888


Q ss_pred             eEEEccCCCccccccccccCCCCcEeecccccC-----------------------cc---------------ccCCCCC
Q 015671          156 VLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHR-----------------------LI---------------AKTPNPT  197 (403)
Q Consensus       156 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~-----------------------~~---------------~~~~~~~  197 (403)
                      +.|++.++.+..++.. .....+..+....+..                       ..               .......
T Consensus       113 ~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (384)
T d2omza2         113 TGLTLFNNQITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS  191 (384)
T ss_dssp             CEEECCSSCCCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccccccccccc-cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            8888887766543221 1111222111111100                       00               0000011


Q ss_pred             CCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCE
Q 015671          198 LMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEY  276 (403)
Q Consensus       198 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~  276 (403)
                      ....+++++.+++++|.+.+..|  ...+++|+.|++++|. +..++.+.. ++++.+++++|.++.++. +..+++|+.
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~  267 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE  267 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCC-CCCcchhhcccccchhccccCccCCCCc-ccccccCCE
Confidence            22334556666666655433222  3345666666666643 333333333 666666666666665543 555666666


Q ss_pred             EecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCC
Q 015671          277 LDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYS  353 (403)
Q Consensus       277 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c  353 (403)
                      |+++++.+.+. ++ +..++.++.+.+.+|.+.+.  ..+..+++++.|++++|.++.++. +..+++|++|++++|
T Consensus       268 L~l~~~~l~~~-~~-~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n  339 (384)
T d2omza2         268 LKLGANQISNI-SP-LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANN  339 (384)
T ss_dssp             EECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred             eeccCcccCCC-Cc-cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCC
Confidence            66666554322 11 33344444444444433221  123334444444444444443331 344444444444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=5.6e-20  Score=165.44  Aligned_cols=217  Identities=16%  Similarity=0.158  Sum_probs=94.4

Q ss_pred             CCeeEEEecCCCCCCCC-CCC-CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEE
Q 015671          131 AEVKYLHWHGYPLKSFP-SNL-SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVIL  208 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp-~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L  208 (403)
                      ++|++|+++++.+..++ ..+ .+++|++|++++|+++.+|...  ...++.|.+.++. +. .++. ..+.....+..+
T Consensus        55 ~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~-l~-~l~~-~~~~~~~~~~~l  129 (305)
T d1xkua_          55 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENE-IT-KVRK-SVFNGLNQMIVV  129 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSC-CC-BBCH-HHHTTCTTCCEE
T ss_pred             ccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhccccc-hh-hhhh-hhhhcccccccc
Confidence            45555555555544442 223 3455555555555554444321  2344444444431 11 1110 012222333444


Q ss_pred             EecCCCCCC--ccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCccc-ChhhhCCCCCCEEecccCcCC
Q 015671          209 NLRGSKSLK--SLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKEL-PSSIESLLRLEYLDLSDCKRL  285 (403)
Q Consensus       209 ~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~  285 (403)
                      ....+....  ..+..+..+++|+.+++++|. +..+|....++++.|+++++..+.. +..+..++.++.|++++|.+.
T Consensus       130 ~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccCCCccccccccccCccccccCC-ccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccc
Confidence            444332111  112233444555555555433 2233333335555555555544422 233444555555555555544


Q ss_pred             CcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChh-------hhcCCCCCEEeccCCc
Q 015671          286 KSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPES-------IIQHFVLRYLLLSYSE  354 (403)
Q Consensus       286 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-------~~~~~~L~~L~l~~c~  354 (403)
                      +..+..+.++++|++|++++|.+ ..+|.++..+++|+.|++++|+|+.++..       ....++|+.|++++|+
T Consensus       209 ~~~~~~~~~l~~L~~L~L~~N~L-~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         209 AVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccccccccceeeecccccc-cccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            44444444555555555555433 23444455555555555555555544321       1233445555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=5.7e-20  Score=170.62  Aligned_cols=251  Identities=16%  Similarity=0.186  Sum_probs=163.3

Q ss_pred             hhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCcc---------
Q 015671           97 TFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIE---------  166 (403)
Q Consensus        97 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~---------  166 (403)
                      .|+++++|++|++++|.+.+       ++ .+.. ++|+.|+++++.+..++.......+.......+.+.         
T Consensus        83 ~l~~L~~L~~L~L~~n~i~~-------i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  154 (384)
T d2omza2          83 PLKNLTKLVDILMNNNQIAD-------IT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT  154 (384)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-------CG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCT
T ss_pred             cccCCccccccccccccccc-------cc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            48999999999999998742       22 2445 899999999888776654443333333322211110         


Q ss_pred             ---------------------------------ccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCC
Q 015671          167 ---------------------------------QLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGS  213 (403)
Q Consensus       167 ---------------------------------~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  213 (403)
                                                       ..+.....+++++.+.++++     .+..+......++|+.|++++|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n-----~i~~~~~~~~~~~L~~L~l~~n  229 (384)
T d2omza2         155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN-----QISDITPLGILTNLDELSLNGN  229 (384)
T ss_dssp             TCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-----CCCCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccchhhhhccccccccccccccccccccccccccccceeeccCC-----ccCCCCcccccCCCCEEECCCC
Confidence                                             11134456677788888776     2222223455677788888887


Q ss_pred             CCCCccCccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccc
Q 015671          214 KSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSL  292 (403)
Q Consensus       214 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~  292 (403)
                      .+. .++ .+..+++|+.|++++|.. ...+.... ++|+.|+++++.++.+++ +..++.++.+.+..|.+.+ + ..+
T Consensus       230 ~l~-~~~-~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~-~-~~~  303 (384)
T d2omza2         230 QLK-DIG-TLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-I-SPI  303 (384)
T ss_dssp             CCC-CCG-GGGGCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-C-GGG
T ss_pred             CCC-Ccc-hhhcccccchhccccCcc-CCCCcccccccCCEeeccCcccCCCCc-ccccccccccccccccccc-c-ccc
Confidence            643 333 366778888888888653 34444443 788888888877776653 5667778888887776543 2 235


Q ss_pred             cCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCCCeEeccCCCCC
Q 015671          293 CKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPSPLFLARGCLAM  372 (403)
Q Consensus       293 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~l~i~~c~~l  372 (403)
                      ..+++++.|++++|.+.+..  .+..+++|+.|++++|.++.++ .+..+++|++|++++|+..+ +|.    +.+|++|
T Consensus       304 ~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~-l~~----l~~l~~L  375 (384)
T d2omza2         304 SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISD-LTP----LANLTRI  375 (384)
T ss_dssp             GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCB-CGG----GTTCTTC
T ss_pred             chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCC-Chh----hccCCCC
Confidence            66778888888887665543  3667788888888888887766 47778888888888776443 331    4566666


Q ss_pred             CC
Q 015671          373 QP  374 (403)
Q Consensus       373 ~~  374 (403)
                      +.
T Consensus       376 ~~  377 (384)
T d2omza2         376 TQ  377 (384)
T ss_dssp             SE
T ss_pred             CE
Confidence            65

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.7e-20  Score=161.95  Aligned_cols=194  Identities=22%  Similarity=0.180  Sum_probs=120.1

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEE
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILN  209 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~  209 (403)
                      ..+...+.+++.++++|..+. +++++|+|++|.++.++ ..+.++++|++|++++| .++ .++   .++.+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~-~l~---~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELT-KLQ---VDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCC-EEE---CCSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccc-ccc---cccccccccccc
Confidence            344556788888888887653 57899999999999887 46889999999999998 333 343   456788899999


Q ss_pred             ecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccChh-hhCCCCCCEEecccCcCCC
Q 015671          210 LRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPSS-IESLLRLEYLDLSDCKRLK  286 (403)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~  286 (403)
                      +++|.+. ..+..+..+++|+.|+++++......+....  .+++.|.+++|.++.+|.. +..+++++.+++++|.+.+
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            9998744 4566677888999999988654432222221  4455555555555544432 2334455555555554444


Q ss_pred             cCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCC
Q 015671          287 SLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNI  332 (403)
Q Consensus       287 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l  332 (403)
                      ..+..+..+++|+.|+|++|.+. .+|+.+..+++|+.|+|++|.+
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            33334444455555555554433 4444444444555555554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.2e-19  Score=157.94  Aligned_cols=217  Identities=20%  Similarity=0.246  Sum_probs=156.0

Q ss_pred             EEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCC
Q 015671          136 LHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSK  214 (403)
Q Consensus       136 L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  214 (403)
                      +..++.+++++|..+. ..+++|+|++|.++.+|. .+..+++|++|+++++ .+. .++ ...+.+++.++.+....+.
T Consensus        16 v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~-~i~-~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLA-RID-AAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCSSCCTTCC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-EEC-TTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCCccCCCCC-CCCCEEECcCCcCCCCCHHHhhccccccccccccc-ccc-ccc-ccccccccccccccccccc
Confidence            3455666777776543 456778888888877764 5777888888888776 233 222 2345566777777665444


Q ss_pred             CCCcc-CccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccCh-hhhCCCCCCEEecccCcCCCcCCc
Q 015671          215 SLKSL-PSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       215 ~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~  290 (403)
                      ....+ +..+.++++|+.|++++|......+....  .+|+.+++++|.++.+|. .+..+++|+.|++++|.+.+..+.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            34444 45567788888888887665433333333  778888888888887764 467788899999998887666666


Q ss_pred             cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC-hhhhcCCCCCEEeccCCcCC
Q 015671          291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP-ESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l  356 (403)
                      .+..+++|+.+++++|.+.+..|.++.++++|+.|++++|.+..++ ..++.+++|++|++++|+..
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            7788889999999998888888888888999999999999988655 46778889999999988644

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.8e-19  Score=160.32  Aligned_cols=201  Identities=20%  Similarity=0.227  Sum_probs=165.8

Q ss_pred             CCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcE
Q 015671          131 AEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVI  207 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~  207 (403)
                      ..+++|+|++|.++.+|.. + .+++|++|+++++.+..++ ..+..+..++.+....+..+. .++ ...+.++++|++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~-~l~-~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVD-PATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCC-TTTTTTCTTCCE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc-ccc-chhhcccccCCE
Confidence            6688999999999988754 4 7899999999999988765 466778889988877665554 443 346888999999


Q ss_pred             EEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcC
Q 015671          208 LNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKR  284 (403)
Q Consensus       208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~  284 (403)
                      |++++|......+..+..+++|+.+++++|......+..+.  ++|+.|++++|.++.++ ..+..+++|+.+++++|.+
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence            99999886655566677889999999998665433333333  88999999999999876 4568899999999999998


Q ss_pred             CCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          285 LKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       285 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                      .+..|..+..+++|+.|++++|.+.+..+.++..+++|+.|++++|.+.
T Consensus       190 ~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            8888889999999999999999998888888999999999999999877

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=5.7e-18  Score=152.08  Aligned_cols=255  Identities=15%  Similarity=0.112  Sum_probs=192.0

Q ss_pred             CceeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccc-cCCCCC-CCeeEEEecCCCCCCCCCCCCCC
Q 015671           76 EKIEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSFPSNLSAE  153 (403)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~lp~~~~l~  153 (403)
                      ..++.+.  ++......+.+..|..+++|++|++++|.+.       .+ +..+.. ++|++|++++|.++.+|... ..
T Consensus        31 ~~l~~L~--Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-------~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~-~~  100 (305)
T d1xkua_          31 PDTALLD--LQNNKITEIKDGDFKNLKNLHTLILINNKIS-------KISPGAFAPLVKLERLYLSKNQLKELPEKM-PK  100 (305)
T ss_dssp             TTCCEEE--CCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-------CBCTTTTTTCTTCCEEECCSSCCSBCCSSC-CT
T ss_pred             CCCCEEE--CcCCcCCCcChhHhhcccccccccccccccc-------ccchhhhhCCCccCEecccCCccCcCccch-hh
Confidence            3455544  4444444556678999999999999999874       33 455666 99999999999999998754 45


Q ss_pred             CceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEE
Q 015671          154 KLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKL  232 (403)
Q Consensus       154 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  232 (403)
                      .+..|++..+.+..++. .+.....+..+....+.... .......+..+++|+.+++.+|.+. .+|..  .+++|+.|
T Consensus       101 ~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~-~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L  176 (305)
T d1xkua_         101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTEL  176 (305)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEE
T ss_pred             hhhhhhccccchhhhhhhhhhccccccccccccccccc-cCCCccccccccccCccccccCCcc-ccCcc--cCCccCEE
Confidence            78999999999988764 56677888888888764333 2222346777899999999998743 45543  47899999


Q ss_pred             eecCCCCCCCCccccc--CCCcEEEecCccCcccC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCC
Q 015671          233 DLSGCSKLKRLPEISS--GNISWLFLTGTAIKELP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNL  309 (403)
Q Consensus       233 ~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  309 (403)
                      ++++|......+..+.  +.++.|.+++|.++.++ ..+..+++|++|++++|++ +.+|..+.++++|+.|++++|.+.
T Consensus       177 ~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L-~~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccc-cccccccccccCCCEEECCCCccC
Confidence            9999876666555444  88999999999999775 5668899999999999975 467888999999999999998765


Q ss_pred             cccC------cccCCCCCCCEEEccCCCCcccChhhhcCCCC
Q 015671          310 QRLP------ECLGQLSSPITLGLTETNIERIPESIIQHFVL  345 (403)
Q Consensus       310 ~~~~------~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L  345 (403)
                      ..-.      .......+|+.|++++|.++.++.....++.+
T Consensus       256 ~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             ccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence            4222      22345788999999999987443333344433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6e-18  Score=148.81  Aligned_cols=196  Identities=18%  Similarity=0.168  Sum_probs=151.4

Q ss_pred             CCCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCceEEEccCCCccccccccccCCC
Q 015671          100 KMPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPS-NL-SAEKLVLFEVPENDIEQLWDCVKHYSK  177 (403)
Q Consensus       100 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~  177 (403)
                      +...+..++.+++.+.       .+|..+. +++++|+|++|.++.+|. .+ .+++|++|++++|.++.++. ++.+++
T Consensus         8 ~~~~~~~v~C~~~~L~-------~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~   78 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-------ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPV   78 (266)
T ss_dssp             CSTTCCEEECTTSCCS-------SCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTT
T ss_pred             ccCCCeEEEccCCCCC-------eeCcCcC-cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccc
Confidence            4455556666666552       4454432 678999999999988864 34 78899999999999988764 467899


Q ss_pred             CcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCccccc---CCCcEE
Q 015671          178 LNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWL  254 (403)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~L~~L  254 (403)
                      |++|++++|+ +. ..+  ..+.++++|+.|+++++......+..+..+.+++.|.+++|... .++....   ++++.+
T Consensus        79 L~~L~Ls~N~-l~-~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          79 LGTLDLSHNQ-LQ-SLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             CCEEECCSSC-CS-SCC--CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cccccccccc-cc-ccc--cccccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhc
Confidence            9999999883 33 333  35778889999999998876666666778899999999986544 4444333   889999


Q ss_pred             EecCccCcccCh-hhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCc
Q 015671          255 FLTGTAIKELPS-SIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQ  310 (403)
Q Consensus       255 ~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  310 (403)
                      ++++|.++.++. .+..+++|++|++++|.+. .+|..+..+++|+.|+|++|+...
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            999999998875 4688999999999999865 889888899999999999987543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=8.4e-18  Score=144.23  Aligned_cols=187  Identities=17%  Similarity=0.235  Sum_probs=112.6

Q ss_pred             CCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCE
Q 015671          152 AEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTK  231 (403)
Q Consensus       152 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  231 (403)
                      +.+|++|++.+|+++.+ +.+.++++|++|++++|     .+..+..+.++++|+.+++++|... .++ .++++++|+.
T Consensus        40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n-----~i~~~~~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN-----QITDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSS-----CCCCCGGGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCE
T ss_pred             cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCc-----eeecccccccccccccccccccccc-ccc-cccccccccc
Confidence            44555555555555554 23455555555555555     2222223445555555555554422 222 2445566666


Q ss_pred             EeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcc
Q 015671          232 LDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR  311 (403)
Q Consensus       232 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  311 (403)
                      +.++++......+....+.+..+.++++.+.... .+..+++|+.|++++|..... + .++++++|+.|++++|.+.+ 
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~~-  187 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKISD-  187 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-
T ss_pred             cccccccccccchhccccchhhhhchhhhhchhh-hhccccccccccccccccccc-h-hhcccccceecccCCCccCC-
Confidence            6665544332222112255666666655554433 356778888888888775432 2 36778889999998886544 


Q ss_pred             cCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccC
Q 015671          312 LPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSY  352 (403)
Q Consensus       312 ~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~  352 (403)
                      ++ .++++++|++|++++|+++.++. ++.+++|+.|++++
T Consensus       188 l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 IS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             Ch-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            44 37788899999999998888874 78889999998873

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.8e-16  Score=135.72  Aligned_cols=186  Identities=18%  Similarity=0.205  Sum_probs=110.9

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL  210 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  210 (403)
                      .+|+.|++.++.+++++....+++|++|++++|.+..++. +..+++|+++++++|     .+..+..+.++++|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n-----~~~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-----PLKNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-----CCSCCGGGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc-ccccccccccccccc-----ccccccccccccccccccc
Confidence            3445555555555555432245666666666665555432 555666666666655     2222334555566666666


Q ss_pred             cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc
Q 015671          211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~  290 (403)
                      +++.....  ..+...+.++.+.++++......+....++|+.|.++++.++..+ .++.+++|+.|++++|.+. .++.
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~-~l~~  190 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKIS-DISP  190 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-CCGG
T ss_pred             cccccccc--chhccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCccC-CChh
Confidence            65543221  123455666666666544333222222266777777766666544 3677888999999888754 4543


Q ss_pred             cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccC
Q 015671          291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTE  329 (403)
Q Consensus       291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  329 (403)
                       ++++++|+.|++++|++.+ ++ .+.++++|+.|++++
T Consensus       191 -l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 -LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             -hcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence             6788899999999987554 44 378889999998864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=1.4e-14  Score=131.87  Aligned_cols=117  Identities=22%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             CCCCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcE
Q 015671          101 MPKLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQ  180 (403)
Q Consensus       101 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~  180 (403)
                      .++|++|++++|.+.       .+|..+  .+|+.|+++++.++.++..  .+.|++|++++|.+..+|. ++.+++|++
T Consensus        57 ~~~L~~L~Ls~N~l~-------~lp~~~--~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~l~~lp~-~~~l~~L~~  124 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-------ELPELP--QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPE-LQNSSFLKI  124 (353)
T ss_dssp             CTTCSEEECCSSCCS-------SCCCCC--TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCC-CTTCTTCCE
T ss_pred             CCCCCEEECCCCCCc-------ccccch--hhhhhhhhhhcccchhhhh--ccccccccccccccccccc-hhhhcccee
Confidence            356777777776652       333322  4567777777766666542  2356777777777766654 456677777


Q ss_pred             eecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCC
Q 015671          181 IIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCS  238 (403)
Q Consensus       181 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  238 (403)
                      |+++++.. . ..+     .....+..+.+..+...  .+..+..++.++.+.+.++.
T Consensus       125 L~l~~~~~-~-~~~-----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         125 IDVDNNSL-K-KLP-----DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EECCSSCC-S-CCC-----CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSC
T ss_pred             eccccccc-c-ccc-----cccccccchhhcccccc--ccccccccccceeccccccc
Confidence            77766621 1 111     11244455655543321  22335677888888887654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-15  Score=131.58  Aligned_cols=221  Identities=19%  Similarity=0.235  Sum_probs=136.7

Q ss_pred             eEEEecCCCCCCCCCCCCCCCceEEEccCCCcccccc-ccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671          134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWD-CVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG  212 (403)
Q Consensus       134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (403)
                      +.++.++.+++++|..+. .++++|++++|.++.+|. .+.++++|++|++++|.... .++ ...+.+++.++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~-~i~-~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIE-ADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC-EEC-SSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc-eee-ccccccccccccccccc
Confidence            456666666777776442 467778888777777764 56777888888887774322 222 33566677777777655


Q ss_pred             C-CCCCccCccCCCCCCCCEEeecCCCCCCCCccccc----CCCcEEEecCccCcccCh-hhhCC-CCCCEEecccCcCC
Q 015671          213 S-KSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISS----GNISWLFLTGTAIKELPS-SIESL-LRLEYLDLSDCKRL  285 (403)
Q Consensus       213 ~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~l~~-~~~~l-~~L~~L~l~~~~~~  285 (403)
                      + ......+..+.++++|+.++++++.. ...+....    ..+..+...++.+..++. .+..+ ..++.|++.+|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l-~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCC-CSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cccccccccccccccccccccccchhhh-cccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            3 33333345567778888888877543 33333322    333444445556665553 23333 47888888887754


Q ss_pred             CcCCccccCCCCCcEEeecCCCCCcccC-cccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccCCcCCCcCCC
Q 015671          286 KSLPSSLCKLKSLGVLNLYGCSNLQRLP-ECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSYSERLQSLPS  361 (403)
Q Consensus       286 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~  361 (403)
                       .++....+.+.++.+....++....+| ..|.++++|+.|++++|+++.+|..  .+.+|..|..-++..++.+|.
T Consensus       167 -~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~--~~~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         167 -EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             -EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS--SCTTCCEEESSSEESSSCSCC
T ss_pred             -ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHH--HHcCCcccccCcCCCCCcCCC
Confidence             455545556676666554444444554 4578899999999999999988753  345555555444555667764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.2e-15  Score=126.05  Aligned_cols=160  Identities=21%  Similarity=0.282  Sum_probs=83.3

Q ss_pred             CCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEe
Q 015671          131 AEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNL  210 (403)
Q Consensus       131 ~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l  210 (403)
                      .++++|+++++.+++++..-.+++|++|++++|.++.++. ++.+++|++|++++|.     +..+..+.+++.|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-----~~~~~~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-----IADITPLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-----CCCCGGGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCcccccccccccc-----cccccccccccccccccc
Confidence            3455555555555555432245666666666666665543 5666666666666652     222223455566666666


Q ss_pred             cCCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc
Q 015671          211 RGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS  290 (403)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~  290 (403)
                      ++|.... . ..+..+++|+.|++++|.                      +..++ .+..+++|+.|++.+|.+.. ++ 
T Consensus       114 ~~~~~~~-~-~~~~~l~~L~~L~l~~n~----------------------l~~~~-~l~~~~~L~~L~l~~n~l~~-l~-  166 (199)
T d2omxa2         114 FNNQITD-I-DPLKNLTNLNRLELSSNT----------------------ISDIS-ALSGLTSLQQLNFSSNQVTD-LK-  166 (199)
T ss_dssp             CSSCCCC-C-GGGTTCTTCSEEECCSSC----------------------CCCCG-GGTTCTTCSEEECCSSCCCC-CG-
T ss_pred             ccccccc-c-cccchhhhhHHhhhhhhh----------------------hcccc-cccccccccccccccccccC-Cc-
Confidence            6554322 1 224456666666666543                      32222 24455555566655555332 22 


Q ss_pred             cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEE
Q 015671          291 SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITL  325 (403)
Q Consensus       291 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  325 (403)
                      .++++++|+.|++++|.+.+ ++ .++++++|+.|
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            24556666666666654332 32 34555666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.8e-15  Score=127.72  Aligned_cols=165  Identities=20%  Similarity=0.190  Sum_probs=105.1

Q ss_pred             CCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCE
Q 015671          152 AEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTK  231 (403)
Q Consensus       152 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  231 (403)
                      +..|++|+++++.++.++ .+..+++|++|++++|     .+..+..++++++|+.|++++|.+. .++. +..+++|+.
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n-----~i~~l~~~~~l~~L~~L~l~~n~i~-~l~~-l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-----KLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-----CCCCCGGGTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCE
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCc-----cccCccccccCcccccccccccccc-cccc-ccccccccc
Confidence            456666666666666553 3556666666666666     2222223455666666666665532 3332 555666666


Q ss_pred             EeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcc
Q 015671          232 LDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQR  311 (403)
Q Consensus       232 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  311 (403)
                      |++++|                      .+..++ .+..+++++.+++++|.+..  +..+..+++|+.+++++|.+.+ 
T Consensus       117 L~l~~~----------------------~~~~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-  170 (210)
T d1h6ta2         117 LSLEHN----------------------GISDIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-  170 (210)
T ss_dssp             EECTTS----------------------CCCCCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-
T ss_pred             cccccc----------------------cccccc-cccccccccccccccccccc--cccccccccccccccccccccc-
Confidence            666654                      333332 45667778888887776543  2235567888888888877654 


Q ss_pred             cCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCEEeccC
Q 015671          312 LPECLGQLSSPITLGLTETNIERIPESIIQHFVLRYLLLSY  352 (403)
Q Consensus       312 ~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~  352 (403)
                      ++ .++++++|+.|++++|.++.++ .+..+++|+.|+|++
T Consensus       171 i~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 IV-PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             cc-cccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            33 3778888888888888888776 477888888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2e-15  Score=127.37  Aligned_cols=162  Identities=17%  Similarity=0.151  Sum_probs=88.9

Q ss_pred             CeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEec
Q 015671          132 EVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLR  211 (403)
Q Consensus       132 ~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~  211 (403)
                      +|++|+++++.++.++..-.+++|++|++++|.++.++ .++.+++|++|++++|     .+..+..+..+++|+.|++.
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n-----~i~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDEN-----KVKDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-----CCCCGGGGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc-ccccCccccccccccc-----cccccccccccccccccccc
Confidence            45555555555555543224666666666666666654 3456667777777666     22223345566667777777


Q ss_pred             CCCCCCccCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCcc
Q 015671          212 GSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSS  291 (403)
Q Consensus       212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~  291 (403)
                      +|... .++ .+..+++++.+++++|... ..                      .....+++|+.+++++|.+.+ ++ .
T Consensus       121 ~~~~~-~~~-~l~~l~~l~~l~~~~n~l~-~~----------------------~~~~~l~~L~~l~l~~n~l~~-i~-~  173 (210)
T d1h6ta2         121 HNGIS-DIN-GLVHLPQLESLYLGNNKIT-DI----------------------TVLSRLTKLDTLSLEDNQISD-IV-P  173 (210)
T ss_dssp             TSCCC-CCG-GGGGCTTCCEEECCSSCCC-CC----------------------GGGGGCTTCSEEECCSSCCCC-CG-G
T ss_pred             ccccc-ccc-ccccccccccccccccccc-cc----------------------ccccccccccccccccccccc-cc-c
Confidence            66532 222 3556667777777664321 11                      123345556666666555432 22 2


Q ss_pred             ccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEcc
Q 015671          292 LCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLT  328 (403)
Q Consensus       292 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  328 (403)
                      +.++++|++|++++|.+. .++ .+.++++|+.|+|+
T Consensus       174 l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            455666666666665443 333 35666666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=4.2e-15  Score=124.33  Aligned_cols=76  Identities=22%  Similarity=0.260  Sum_probs=49.4

Q ss_pred             hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccChhhhcCCCCCE
Q 015671          268 IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIPESIIQHFVLRY  347 (403)
Q Consensus       268 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~  347 (403)
                      +..+++|+.|++++|.+. .++ .+..+++|+.|++.+|.+.+. + .++++++|+.|++++|+++.++ .++.+++|+.
T Consensus       124 ~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~  198 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDIS-VLAKLTNLES  198 (199)
T ss_dssp             GTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSE
T ss_pred             cchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCCc-cccCCCCCCc
Confidence            556677777777777643 233 356677777777777665442 2 3667777777777777777665 3566777765


Q ss_pred             E
Q 015671          348 L  348 (403)
Q Consensus       348 L  348 (403)
                      |
T Consensus       199 L  199 (199)
T d2omxa2         199 L  199 (199)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.62  E-value=1.6e-13  Score=124.73  Aligned_cols=93  Identities=16%  Similarity=0.136  Sum_probs=46.7

Q ss_pred             CCcEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEee
Q 015671          103 KLRFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQII  182 (403)
Q Consensus       103 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~  182 (403)
                      ++++|+++++.++       .+|+.  .++|++|++++|.++++|..  +.+|++|++.+|.++.++..   .+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-------~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-------SLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-------CCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred             CCCEEEeCCCCCC-------CCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhh---cccccccc
Confidence            4555666655542       22321  14566666666666666543  23556666666655544321   13466666


Q ss_pred             cccccCccccCCCCCCCCCCCCCcEEEecCCC
Q 015671          183 HAVCHRLIAKTPNPTLMPRLNKVVILNLRGSK  214 (403)
Q Consensus       183 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  214 (403)
                      +++| .+. .+|   .++++++|+.|+++++.
T Consensus       105 L~~n-~l~-~lp---~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         105 VSNN-QLE-KLP---ELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             CCSS-CCS-SCC---CCTTCTTCCEEECCSSC
T ss_pred             cccc-ccc-ccc---chhhhccceeecccccc
Confidence            6655 122 222   34455556666665544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.9e-16  Score=137.06  Aligned_cols=192  Identities=22%  Similarity=0.235  Sum_probs=116.8

Q ss_pred             CCCCceEEEccCCCccc--cccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCc--cCccCCCC
Q 015671          151 SAEKLVLFEVPENDIEQ--LWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKS--LPSEIFNL  226 (403)
Q Consensus       151 ~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l  226 (403)
                      ....|++||++++.+..  +...+.++++|++|++++|. +...  .+..+..+++|++|++++|.....  +......+
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~--~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDP--IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHH--HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcH--HHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            56678888998887753  45667788899999998883 2211  123456678889999988765432  22223467


Q ss_pred             CCCCEEeecCCCCCCCC--cccc---cCCCcEEEecCc--cCc--ccChhhhCCCCCCEEecccCcCC-CcCCccccCCC
Q 015671          227 EFLTKLDLSGCSKLKRL--PEIS---SGNISWLFLTGT--AIK--ELPSSIESLLRLEYLDLSDCKRL-KSLPSSLCKLK  296 (403)
Q Consensus       227 ~~L~~L~l~~~~~~~~~--~~~~---~~~L~~L~l~~~--~~~--~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~  296 (403)
                      ++|++|++++|..+...  ....   .++|+.|+++++  .++  .+......+++|+.|++++|... ......+.+++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            88999999887655431  1111   156777777653  232  23333456677777777776533 33444566677


Q ss_pred             CCcEEeecCCCCC-cccCcccCCCCCCCEEEccCCCCc--ccChhhhcCCCCC
Q 015671          297 SLGVLNLYGCSNL-QRLPECLGQLSSPITLGLTETNIE--RIPESIIQHFVLR  346 (403)
Q Consensus       297 ~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~--~l~~~~~~~~~L~  346 (403)
                      +|+.|++++|..+ +.....+..+++|+.|++.+| ++  .++.....+|.|+
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            7777777776533 333344566677777777766 33  3333334455544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.3e-14  Score=123.66  Aligned_cols=210  Identities=18%  Similarity=0.178  Sum_probs=139.8

Q ss_pred             cEEEEeccCCCCCCcccccccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCceEEEccCCCccc-cc-cccccCCCCcE
Q 015671          105 RFLKFYSSSFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSFPSN-L-SAEKLVLFEVPENDIEQ-LW-DCVKHYSKLNQ  180 (403)
Q Consensus       105 r~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~  180 (403)
                      ++++.++..+       ..+|..+. .++++|++++|.++.+|.. + ++++|++|++++|.+.. ++ ..+..+++++.
T Consensus        11 ~~i~c~~~~l-------~~iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~   82 (242)
T d1xwdc1          11 RVFLCQESKV-------TEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   82 (242)
T ss_dssp             SEEEEESCSC-------SSCCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCE
T ss_pred             CEEEEeCCCC-------CCcCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccc
Confidence            5666666554       24444332 5788999999998888764 4 68899999999988765 33 46778899999


Q ss_pred             eecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEE---eecCCCCCCCCccccc----CCCcE
Q 015671          181 IIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKL---DLSGCSKLKRLPEISS----GNISW  253 (403)
Q Consensus       181 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L---~l~~~~~~~~~~~~~~----~~L~~  253 (403)
                      +.+..+..+. ..+ ...+.++++|+++++.+|.+.. .+. ...+.+++.+   ...+ ..+..++....    ..+..
T Consensus        83 l~~~~~n~l~-~~~-~~~~~~l~~L~~l~l~~~~l~~-~~~-~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~  157 (242)
T d1xwdc1          83 IRIEKANNLL-YIN-PEAFQNLPNLQYLLISNTGIKH-LPD-VHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVI  157 (242)
T ss_dssp             EEEECCTTCC-EEC-TTSEECCTTCCEEEEESCCCCS-CCC-CTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEE
T ss_pred             cccccccccc-ccc-cccccccccccccccchhhhcc-ccc-ccccccccccccccccc-ccccccccccccccccccee
Confidence            9887665544 333 2467788999999999887543 332 3344444443   4443 34444433322    57888


Q ss_pred             EEecCccCcccChhhhCCCCCCEEecccCcCCCcCCc-cccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEc
Q 015671          254 LFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPS-SLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGL  327 (403)
Q Consensus       254 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  327 (403)
                      |.++++.++.++......++++.+....+...+.+|. .+.++++|+.|++++|.+....+..+.++++|+.+++
T Consensus       158 L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             EECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             eecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            9999999998887776777777775444444556665 4788999999999998876443444555555554444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.2e-14  Score=126.71  Aligned_cols=197  Identities=16%  Similarity=0.158  Sum_probs=139.6

Q ss_pred             ceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEee
Q 015671          155 LVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDL  234 (403)
Q Consensus       155 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  234 (403)
                      ...+.+....+...........+|++|++++|......+.  ..+.++++|++|++.+|.+....+..++.+++|++|++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~--~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  102 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH--GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  102 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH--HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHH--HHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccc
Confidence            3445555554443333444567999999998832110111  23677899999999999876666777888999999999


Q ss_pred             cCCCCCCCC--ccccc--CCCcEEEecCc-cCc--ccChhh-hCCCCCCEEecccCcC-CC--cCCccccCCCCCcEEee
Q 015671          235 SGCSKLKRL--PEISS--GNISWLFLTGT-AIK--ELPSSI-ESLLRLEYLDLSDCKR-LK--SLPSSLCKLKSLGVLNL  303 (403)
Q Consensus       235 ~~~~~~~~~--~~~~~--~~L~~L~l~~~-~~~--~l~~~~-~~l~~L~~L~l~~~~~-~~--~~~~~~~~l~~L~~L~l  303 (403)
                      ++|..++..  .....  ++|++|+++++ .++  .+...+ ...++|+.|+++++.. .+  .+.....++++|+.|++
T Consensus       103 s~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L  182 (284)
T d2astb2         103 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  182 (284)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             cccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccc
Confidence            998877642  22222  89999999975 444  233333 3457899999998642 21  13333456899999999


Q ss_pred             cCCCC-CcccCcccCCCCCCCEEEccCC-CCc-ccChhhhcCCCCCEEeccCC
Q 015671          304 YGCSN-LQRLPECLGQLSSPITLGLTET-NIE-RIPESIIQHFVLRYLLLSYS  353 (403)
Q Consensus       304 ~~~~~-~~~~~~~l~~l~~L~~L~l~~~-~l~-~l~~~~~~~~~L~~L~l~~c  353 (403)
                      ++|.. .+.....+..+++|++|++++| .++ .-...++++++|+.|++++|
T Consensus       183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            99875 4456667888999999999997 566 34445788999999999998

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=2.2e-12  Score=106.78  Aligned_cols=115  Identities=17%  Similarity=0.060  Sum_probs=67.8

Q ss_pred             CCcccccCCCcEEEecCccCcc-cC-hhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCC
Q 015671          242 RLPEISSGNISWLFLTGTAIKE-LP-SSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQL  319 (403)
Q Consensus       242 ~~~~~~~~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  319 (403)
                      .+|....+++++|++++|.++. ++ ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+.+|.++
T Consensus        22 ~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l  101 (192)
T d1w8aa_          22 EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred             ccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCC
Confidence            3333333445555555555542 22 334566666666666666665555566666666666666666655555566666


Q ss_pred             CCCCEEEccCCCCcccCh-hhhcCCCCCEEeccCCcCC
Q 015671          320 SSPITLGLTETNIERIPE-SIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       320 ~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l  356 (403)
                      ++|+.|+|++|.|+.++. .+..+++|++|++++|+..
T Consensus       102 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            666666666666665543 3456666666666666543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=8.7e-13  Score=100.71  Aligned_cols=100  Identities=16%  Similarity=0.094  Sum_probs=75.3

Q ss_pred             eEEEecCCCCCCCCCCCCCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCC
Q 015671          134 KYLHWHGYPLKSFPSNLSAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGS  213 (403)
Q Consensus       134 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  213 (403)
                      |+|++++|.++.++..-.+.+|++|++++|.++.+|+.+..+++|+.|++++|     .+..+..+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-----~i~~l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-----ALENVDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-----CCCCCGGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-----cccccCccccccccCeEECCCC
Confidence            57888888888887644788888888888888888888888888888888888     3333445777888888888887


Q ss_pred             CCCCcc-CccCCCCCCCCEEeecCCC
Q 015671          214 KSLKSL-PSEIFNLEFLTKLDLSGCS  238 (403)
Q Consensus       214 ~~~~~~-~~~~~~l~~L~~L~l~~~~  238 (403)
                      .+...- ...++.+++|+.|++++|.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCc
Confidence            754321 2346677888888887754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.2e-13  Score=109.39  Aligned_cols=83  Identities=14%  Similarity=0.043  Sum_probs=48.2

Q ss_pred             CCCCceEEEccCCCccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCC
Q 015671          151 SAEKLVLFEVPENDIEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLT  230 (403)
Q Consensus       151 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  230 (403)
                      ++..+++|+|++|+++.++.....+++|++|++++|     .+..++.+..+++|++|++++|.+....+..+..+++|+
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-----~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-----CCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCC-----CCCccCCcccCcchhhhhcccccccCCCccccccccccc
Confidence            445566666666666666555556666777777666     222233456666667777776664332222234566677


Q ss_pred             EEeecCCC
Q 015671          231 KLDLSGCS  238 (403)
Q Consensus       231 ~L~l~~~~  238 (403)
                      .|++++|.
T Consensus        91 ~L~L~~N~   98 (162)
T d1a9na_          91 ELILTNNS   98 (162)
T ss_dssp             EEECCSCC
T ss_pred             cceecccc
Confidence            77666643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=1.3e-12  Score=99.74  Aligned_cols=101  Identities=23%  Similarity=0.244  Sum_probs=71.5

Q ss_pred             cEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCC
Q 015671          252 SWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETN  331 (403)
Q Consensus       252 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  331 (403)
                      +.|++++|.++.++. ++.+++|++|++++|.+ +.+|..++.+++|+.|++++|.+.. +| .+..+++|+.|++++|.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCcc-Ccchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            456677777776663 67777788888877775 3566667777788888888766544 33 46777888888888888


Q ss_pred             CcccCh--hhhcCCCCCEEeccCCcCC
Q 015671          332 IERIPE--SIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       332 l~~l~~--~~~~~~~L~~L~l~~c~~l  356 (403)
                      ++.++.  .+..+++|+.|++++|+..
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            776553  4677788888888877643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=1.5e-12  Score=107.78  Aligned_cols=128  Identities=20%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             cEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccC-ccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEec
Q 015671          179 NQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLP-SEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLT  257 (403)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  257 (403)
                      +.++.+++ .++ .+|.  .+.  +++++|++++|.+...++ ..+..+++|+.|++++|......+             
T Consensus        11 ~~v~Cs~~-~L~-~iP~--~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-------------   71 (192)
T d1w8aa_          11 TTVDCTGR-GLK-EIPR--DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-------------   71 (192)
T ss_dssp             TEEECTTS-CCS-SCCS--CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-------------
T ss_pred             CEEEEeCC-CcC-ccCC--CCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc-------------
Confidence            34555554 344 4443  222  456777777776654443 344566777777776654333222             


Q ss_pred             CccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCc
Q 015671          258 GTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIE  333 (403)
Q Consensus       258 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  333 (403)
                              ..+..+++|+.|++++|++....+..|.++++|+.|+|++|.+.+..+.+|..+++|++|+|++|.+.
T Consensus        72 --------~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          72 --------NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             --------TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             --------cccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence                    23444555555555555544444444555666666666665555555555555666666666665554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.8e-13  Score=105.50  Aligned_cols=81  Identities=20%  Similarity=0.041  Sum_probs=33.6

Q ss_pred             hCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCccc-CcccCCCCCCCEEEccCCCCcccCh----hhhcCC
Q 015671          269 ESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRL-PECLGQLSSPITLGLTETNIERIPE----SIIQHF  343 (403)
Q Consensus       269 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~l~~----~~~~~~  343 (403)
                      ..+++|++|++++|.+....+..+..+++|+.|++++|.+.... ...+..+++|+.|++++|.++..|.    .+..+|
T Consensus        60 ~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp  139 (162)
T d1a9na_          60 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP  139 (162)
T ss_dssp             CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT
T ss_pred             ccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCC
Confidence            34444444444444433222222233444444444444432211 1233444455555555554443332    234444


Q ss_pred             CCCEEe
Q 015671          344 VLRYLL  349 (403)
Q Consensus       344 ~L~~L~  349 (403)
                      +|+.|+
T Consensus       140 ~L~~LD  145 (162)
T d1a9na_         140 QVRVLD  145 (162)
T ss_dssp             TCSEET
T ss_pred             CcCeeC
Confidence            444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=5.3e-13  Score=121.22  Aligned_cols=237  Identities=13%  Similarity=0.077  Sum_probs=131.8

Q ss_pred             hhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCCCCCC-----------C-CCCCceEEEcc
Q 015671           95 PSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSFPSN-----------L-SAEKLVLFEVP  161 (403)
Q Consensus        95 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~lp~~-----------~-~l~~L~~L~l~  161 (403)
                      ...+.....|+.|++++|.++.+.  ...+...+.. ++|+.|+++++........           + ..++|++|+++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~--~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEA--ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHH--HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHH--HHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            345667888999999888764211  1233445555 8888888877654433211           1 24566666666


Q ss_pred             CCCccc-----cccccccCCCCcEeecccccCccccCC-CC----------CCCCCCCCCcEEEecCCCCCCc----cCc
Q 015671          162 ENDIEQ-----LWDCVKHYSKLNQIIHAVCHRLIAKTP-NP----------TLMPRLNKVVILNLRGSKSLKS----LPS  221 (403)
Q Consensus       162 ~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~----------~~~~~l~~L~~L~l~~~~~~~~----~~~  221 (403)
                      +|.+..     +...+...++|++|++++|.. ..... .+          ......+.|+.+.+++|.+...    +..
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l-~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~  180 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  180 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccc-cccccccccccccccccccccccCcccceeecccccccccccccccc
Confidence            665542     334445566666666666521 10000 00          0001223444555544432211    111


Q ss_pred             cCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcc------cChhhhCCCCCCEEecccCcCCCc----CCcc
Q 015671          222 EIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKE------LPSSIESLLRLEYLDLSDCKRLKS----LPSS  291 (403)
Q Consensus       222 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~~~~~----~~~~  291 (403)
                      .+..++                      .++.|++++|.++.      +...+...++|+.|++++|.+...    +...
T Consensus       181 ~l~~~~----------------------~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         181 TFQSHR----------------------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             HHHHCT----------------------TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             hhhhhh----------------------hhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            222334                      44455554444431      223356677888888888775432    3345


Q ss_pred             ccCCCCCcEEeecCCCCCcc----cCcccC--CCCCCCEEEccCCCCc-----ccChhhh-cCCCCCEEeccCCcCC
Q 015671          292 LCKLKSLGVLNLYGCSNLQR----LPECLG--QLSSPITLGLTETNIE-----RIPESII-QHFVLRYLLLSYSERL  356 (403)
Q Consensus       292 ~~~l~~L~~L~l~~~~~~~~----~~~~l~--~l~~L~~L~l~~~~l~-----~l~~~~~-~~~~L~~L~l~~c~~l  356 (403)
                      +..+++|+.|++++|.+.+.    +...+.  ..+.|+.|++++|.++     .+...+. .+++|++|++++|+..
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            56778888888888876543    222332  2467889999999887     2444443 5788999999988653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.2e-13  Score=125.07  Aligned_cols=132  Identities=20%  Similarity=0.138  Sum_probs=81.0

Q ss_pred             CCCCCCEEeecCCCCCCCCccc-----cc-CCCcEEEecCccCcc-----cChhh-hCCCCCCEEecccCcCCCcCCc--
Q 015671          225 NLEFLTKLDLSGCSKLKRLPEI-----SS-GNISWLFLTGTAIKE-----LPSSI-ESLLRLEYLDLSDCKRLKSLPS--  290 (403)
Q Consensus       225 ~l~~L~~L~l~~~~~~~~~~~~-----~~-~~L~~L~l~~~~~~~-----l~~~~-~~l~~L~~L~l~~~~~~~~~~~--  290 (403)
                      ...+++.+++++|.........     .. +.++.+++++|.++.     +...+ .....|+.+++++|.+......  
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            3456666666665432211100     01 667777777776652     11111 2345788888888775543222  


Q ss_pred             --cccCCCCCcEEeecCCCCCcc----cCcccC-CCCCCCEEEccCCCCc-----ccChhhhcCCCCCEEeccCCcCC
Q 015671          291 --SLCKLKSLGVLNLYGCSNLQR----LPECLG-QLSSPITLGLTETNIE-----RIPESIIQHFVLRYLLLSYSERL  356 (403)
Q Consensus       291 --~~~~l~~L~~L~l~~~~~~~~----~~~~l~-~l~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~l  356 (403)
                        .+...++|++|+|++|.+...    ++..+. ..+.|+.|++++|.++     .+...+..+++|++|++++|+..
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence              233456899999998876532    333343 4677999999999887     24556677889999999988643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=6.9e-13  Score=110.21  Aligned_cols=112  Identities=17%  Similarity=0.177  Sum_probs=52.7

Q ss_pred             ccccccccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecCCCCCCccCccCCCCCCCCEEeecCCCCCCCCc
Q 015671          165 IEQLWDCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRGSKSLKSLPSEIFNLEFLTKLDLSGCSKLKRLP  244 (403)
Q Consensus       165 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  244 (403)
                      ++.++..+..+++|++|++++|     .+..+..+.++++|++|++++|.+ ..++.....+++|+.|++++|. ++.++
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n-----~I~~i~~l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L~l~~N~-i~~l~  109 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTN-----NIEKISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ-IASLS  109 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEE-----EESCCCCHHHHTTCCEEECCEEEE-CSCSSHHHHHHHCCEEECSEEE-CCCHH
T ss_pred             hhhhhhHHhcccccceeECccc-----CCCCcccccCCccccChhhccccc-cccccccccccccccccccccc-ccccc
Confidence            3444555666666666666665     233333445556666666666542 2333322233455555555532 22222


Q ss_pred             cccc-CCCcEEEecCccCcccC--hhhhCCCCCCEEecccCc
Q 015671          245 EISS-GNISWLFLTGTAIKELP--SSIESLLRLEYLDLSDCK  283 (403)
Q Consensus       245 ~~~~-~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~  283 (403)
                      .... ++|+.|++++|.++.++  ..+..+++|+.|++++|+
T Consensus       110 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            2111 44444444444444433  234445555555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.9e-10  Score=89.38  Aligned_cols=104  Identities=19%  Similarity=0.123  Sum_probs=77.8

Q ss_pred             cEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCC-ccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCC
Q 015671          252 SWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLP-SSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTET  330 (403)
Q Consensus       252 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  330 (403)
                      +.+...++.+.+.|..+..+++|+.|++.+++..+.++ ..|.++++|+.|++++|.+....+.+|..+++|+.|+|++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            34555556666677777778888888887665444444 45777888888888888776666777888888888888888


Q ss_pred             CCcccChhhhcCCCCCEEeccCCcC
Q 015671          331 NIERIPESIIQHFVLRYLLLSYSER  355 (403)
Q Consensus       331 ~l~~l~~~~~~~~~L~~L~l~~c~~  355 (403)
                      +++.+|........|+.|+|++|+.
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCcccChhhhccccccccccCCCcc
Confidence            8888877666666788888888864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.05  E-value=3.6e-11  Score=108.88  Aligned_cols=204  Identities=16%  Similarity=0.116  Sum_probs=130.1

Q ss_pred             CCCceEEEccCCCcc-----ccccccccCCCCcEeecccccCcc--ccCC-----CCCCCCCCCCCcEEEecCCCCCCc-
Q 015671          152 AEKLVLFEVPENDIE-----QLWDCVKHYSKLNQIIHAVCHRLI--AKTP-----NPTLMPRLNKVVILNLRGSKSLKS-  218 (403)
Q Consensus       152 l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~--~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~-  218 (403)
                      ...|++|++++|.+.     .+...+...++|+.|+++++..-.  ...+     -...+..+++|+.|++++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            556677777776653     233455666777777776652110  0000     012244567778888887765432 


Q ss_pred             ---cCccCCCCCCCCEEeecCCCCCCC--------Cccc-------ccCCCcEEEecCccCc-----ccChhhhCCCCCC
Q 015671          219 ---LPSEIFNLEFLTKLDLSGCSKLKR--------LPEI-------SSGNISWLFLTGTAIK-----ELPSSIESLLRLE  275 (403)
Q Consensus       219 ---~~~~~~~l~~L~~L~l~~~~~~~~--------~~~~-------~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~  275 (403)
                         +...+...++|+.|++++|.....        +...       ..+.++.+.++++.++     .+...+...+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               233344567888888887643111        0000       0167888888877765     3444567789999


Q ss_pred             EEecccCcCCCc-----CCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCcc-----cChhhh-
Q 015671          276 YLDLSDCKRLKS-----LPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIER-----IPESII-  340 (403)
Q Consensus       276 ~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~-----l~~~~~-  340 (403)
                      .|++++|.+...     +...+..+++|+.|++++|.+...    +...+..+++|++|++++|.++.     +-..+. 
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~  269 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  269 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhh
Confidence            999999986532     233466788999999999876432    44567789999999999999872     223333 


Q ss_pred             -cCCCCCEEeccCCcC
Q 015671          341 -QHFVLRYLLLSYSER  355 (403)
Q Consensus       341 -~~~~L~~L~l~~c~~  355 (403)
                       ..+.|++|++++|..
T Consensus       270 ~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         270 LENIGLQTLRLQYNEI  285 (344)
T ss_dssp             CSSCCCCEEECCSSCC
T ss_pred             ccCCCCCEEECCCCcC
Confidence             346899999999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=3.1e-12  Score=106.15  Aligned_cols=109  Identities=22%  Similarity=0.160  Sum_probs=43.3

Q ss_pred             ccCCCCCCCCEEeecCCCCCCCCccccc-CCCcEEEecCccCcccChhhhCCCCCCEEecccCcCCCcCCccccCCCCCc
Q 015671          221 SEIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLTGTAIKELPSSIESLLRLEYLDLSDCKRLKSLPSSLCKLKSLG  299 (403)
Q Consensus       221 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  299 (403)
                      ..+..+++|+.|++++|. ++.++.+.. ++|+.|++++|.++.+|.....+++|+.|++++|.+.. ++ .+..+++|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~  118 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSS
T ss_pred             hHHhcccccceeECcccC-CCCcccccCCccccChhhcccccccccccccccccccccccccccccc-cc-ccccccccc
Confidence            334445555555555432 222222111 34444444444444444333333344444444444221 11 233344444


Q ss_pred             EEeecCCCCCccc-CcccCCCCCCCEEEccCCCC
Q 015671          300 VLNLYGCSNLQRL-PECLGQLSSPITLGLTETNI  332 (403)
Q Consensus       300 ~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l  332 (403)
                      .|++++|.+.... ...+..+++|+.|++++|.+
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCcc
Confidence            4444444332211 02334444444444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.2e-11  Score=113.06  Aligned_cols=276  Identities=13%  Similarity=0.092  Sum_probs=156.5

Q ss_pred             eeEEEecCCCcceeecChhhhcCCCCCcEEEEeccCCCCCCcccccccCCCCC-CCeeEEEecCCCCCC-----CCCCC-
Q 015671           78 IEGICLDMSKVKEFRLNPSTFTKMPKLRFLKFYSSSFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKS-----FPSNL-  150 (403)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~-----lp~~~-  150 (403)
                      ++.+.+....+....+ ...+..++++|+|+|++|.++-.  ....+...+.. ++|++|+|++|.++.     +...+ 
T Consensus         4 l~~ld~~~~~i~~~~~-~~l~~~l~~l~~L~L~~~~i~~~--~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           4 IQSLDIQCEELSDARW-AELLPLLQQCQVVRLDDCGLTEA--RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEESCCCCHHHH-HHHHHHHTTCSEEEEESSCCCHH--HHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCEEEeeCCcCChHHH-HHHHHhCCCCCEEEeCCCCCCHH--HHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            3444444444433222 23456789999999999987410  00122334445 889999999998742     22222 


Q ss_pred             -CCCCceEEEccCCCccc-----cccccccCCCCcEeecccccCccc-------cCCCCC--------------------
Q 015671          151 -SAEKLVLFEVPENDIEQ-----LWDCVKHYSKLNQIIHAVCHRLIA-------KTPNPT--------------------  197 (403)
Q Consensus       151 -~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~-------~~~~~~--------------------  197 (403)
                       ...+|++|++++|.++.     ++..+..+++|++|++++|..-..       .+....                    
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             34579999999999874     356778899999999999842100       000000                    


Q ss_pred             ---CCCCCCCCcEEEecCCCCCCc---------------------------------cCccCCCCCCCCEEeecCCCCCC
Q 015671          198 ---LMPRLNKVVILNLRGSKSLKS---------------------------------LPSEIFNLEFLTKLDLSGCSKLK  241 (403)
Q Consensus       198 ---~~~~l~~L~~L~l~~~~~~~~---------------------------------~~~~~~~l~~L~~L~l~~~~~~~  241 (403)
                         .+...+.++.+.++++.....                                 ....+...+.++.+.++++....
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence               000114455555554332100                                 00011123445555555443211


Q ss_pred             C-----Cccccc--CCCcEEEecCccCcc-----cChhhhCCCCCCEEecccCcCCCcCC----ccc-cCCCCCcEEeec
Q 015671          242 R-----LPEISS--GNISWLFLTGTAIKE-----LPSSIESLLRLEYLDLSDCKRLKSLP----SSL-CKLKSLGVLNLY  304 (403)
Q Consensus       242 ~-----~~~~~~--~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~-~~l~~L~~L~l~  304 (403)
                      .     .+....  ..++.+++++|.+..     ....+...+.++.+++++|.+.....    ..+ .....|+.++++
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~  320 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence            0     000001  567777777776652     22334567778888887776532111    111 234578899998


Q ss_pred             CCCCCcccC----cccCCCCCCCEEEccCCCCc-----ccChhhh-cCCCCCEEeccCCcCC
Q 015671          305 GCSNLQRLP----ECLGQLSSPITLGLTETNIE-----RIPESII-QHFVLRYLLLSYSERL  356 (403)
Q Consensus       305 ~~~~~~~~~----~~l~~l~~L~~L~l~~~~l~-----~l~~~~~-~~~~L~~L~l~~c~~l  356 (403)
                      +|.+.....    ..+...++|++|+|++|.++     .++..+. ..+.|++|++++|...
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence            887655422    23345678999999999886     2344443 4577999999999653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.5e-09  Score=82.54  Aligned_cols=98  Identities=19%  Similarity=0.110  Sum_probs=40.5

Q ss_pred             EEecCCCCCCCCCCC-CCCCceEEEccCC-Cccccc-cccccCCCCcEeecccccCccccCCCCCCCCCCCCCcEEEecC
Q 015671          136 LHWHGYPLKSFPSNL-SAEKLVLFEVPEN-DIEQLW-DCVKHYSKLNQIIHAVCHRLIAKTPNPTLMPRLNKVVILNLRG  212 (403)
Q Consensus       136 L~l~~~~~~~lp~~~-~l~~L~~L~l~~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  212 (403)
                      ++.+++.+.++|..+ .+++|++|++.++ .++.++ ..+..+++|+.|++++| .+. .++ ...+..+++|++|++++
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~-~i~-~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLR-FVA-PDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCC-EEC-TTGGGSCSCCCEEECCS
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccC-Ccc-cccccccccccceeccC
Confidence            444444444444444 3445555555433 244443 23444455555555444 222 222 12334444444444444


Q ss_pred             CCCCCccCccCCCCCCCCEEeecCC
Q 015671          213 SKSLKSLPSEIFNLEFLTKLDLSGC  237 (403)
Q Consensus       213 ~~~~~~~~~~~~~l~~L~~L~l~~~  237 (403)
                      |.+. .+|.......+|+.|++++|
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSS
T ss_pred             CCCc-ccChhhhccccccccccCCC
Confidence            4422 33322222233444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=8.5e-07  Score=70.04  Aligned_cols=81  Identities=20%  Similarity=0.031  Sum_probs=41.5

Q ss_pred             hCCCCCCEEecccCcCCCc--CCccccCCCCCcEEeecCCCCCcccCcccCCCCCCCEEEccCCCCcccC--------hh
Q 015671          269 ESLLRLEYLDLSDCKRLKS--LPSSLCKLKSLGVLNLYGCSNLQRLPECLGQLSSPITLGLTETNIERIP--------ES  338 (403)
Q Consensus       269 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~--------~~  338 (403)
                      ..++.|++|++++|.+...  ++..++.+++|+.|++++|.+...-+-.......|+.|++++|.+....        ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4566777777777765432  2223445666666666665544322212223345666666666655221        12


Q ss_pred             hhcCCCCCEEe
Q 015671          339 IIQHFVLRYLL  349 (403)
Q Consensus       339 ~~~~~~L~~L~  349 (403)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            34556666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=2.9e-05  Score=61.25  Aligned_cols=90  Identities=17%  Similarity=0.048  Sum_probs=58.1

Q ss_pred             cChhhhCCCCCCEEecccCcCCCc----CCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCcc-
Q 015671          264 LPSSIESLLRLEYLDLSDCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIER-  334 (403)
Q Consensus       264 l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~-  334 (403)
                      +...+...+.|+.|++++|.+...    +...+...+.|+.|++++|.+...    +..++...++|++|++++|.+.. 
T Consensus        36 l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          36 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCc
Confidence            334456667788888887765422    222344567788888888776543    33456677788888888775442 


Q ss_pred             -------cChhhhcCCCCCEEeccCC
Q 015671          335 -------IPESIIQHFVLRYLLLSYS  353 (403)
Q Consensus       335 -------l~~~~~~~~~L~~L~l~~c  353 (403)
                             +...+...++|+.|+++.+
T Consensus       116 g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         116 GNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cHHHHHHHHHHHHhCCCccEeeCcCC
Confidence                   3344566778888887665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=3.1e-05  Score=60.74  Aligned_cols=59  Identities=19%  Similarity=0.098  Sum_probs=29.5

Q ss_pred             hhCCCCCCEEecccCcCCCcCCccccCCCCCcEEeecCCCCCcccCc-------ccCCCCCCCEEE
Q 015671          268 IESLLRLEYLDLSDCKRLKSLPSSLCKLKSLGVLNLYGCSNLQRLPE-------CLGQLSSPITLG  326 (403)
Q Consensus       268 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------~l~~l~~L~~L~  326 (403)
                      +..+++|+.|++++|.+...-+-.......|+.|++++|++......       .+..+|+|+.||
T Consensus        87 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          87 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            44556666666666654332211122233566666666665543321       234566666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.19  E-value=0.00011  Score=57.83  Aligned_cols=113  Identities=15%  Similarity=0.102  Sum_probs=62.3

Q ss_pred             CCCCcEEEecCCC-CCCc----cCccCCCCCCCCEEeecCCCCCCCCcccccCCCcEEEecCccCcccChhhhCCCCCCE
Q 015671          202 LNKVVILNLRGSK-SLKS----LPSEIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLTGTAIKELPSSIESLLRLEY  276 (403)
Q Consensus       202 l~~L~~L~l~~~~-~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~  276 (403)
                      .++|++|+++++. +...    +...+...++|++|++++|....                 .....+...+...+.|+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~-----------------~~~~~la~~L~~n~~L~~   76 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD-----------------SEARGLIELIETSPSLRV   76 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH-----------------HHHTTHHHHHHHCSSCCE
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccch-----------------hHHHHHhhhhhhcccccc
Confidence            3566777776533 2211    22234445566666666543210                 111123334556677888


Q ss_pred             EecccCcCCCc----CCccccCCCCCcEEeecCCCCCc-------ccCcccCCCCCCCEEEccCCC
Q 015671          277 LDLSDCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQ-------RLPECLGQLSSPITLGLTETN  331 (403)
Q Consensus       277 L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~~~  331 (403)
                      |++++|.+...    +...+...++|+.|++++|....       .+...+...++|+.|+++.+.
T Consensus        77 L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          77 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             eeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            88888765432    22245566778888887764321       133455567788888887664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.06  E-value=0.00014  Score=57.10  Aligned_cols=91  Identities=14%  Similarity=0.127  Sum_probs=58.6

Q ss_pred             cChhhhCCCCCCEEecccCcCCCc----CCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEcc--CCCCc
Q 015671          264 LPSSIESLLRLEYLDLSDCKRLKS----LPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLT--ETNIE  333 (403)
Q Consensus       264 l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~--~~~l~  333 (403)
                      +...+...++|+.|++++|.+...    +...+...++++.+++++|.+...    +...+...++|+.++|.  +|.+.
T Consensus        38 l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          38 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence            334456677888888888765432    222344567888888888776543    33556677888876664  45564


Q ss_pred             -----ccChhhhcCCCCCEEeccCCc
Q 015671          334 -----RIPESIIQHFVLRYLLLSYSE  354 (403)
Q Consensus       334 -----~l~~~~~~~~~L~~L~l~~c~  354 (403)
                           .+...+...+.|++|+++.+.
T Consensus       118 ~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         118 NNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                 345556778888888887653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.50  E-value=0.005  Score=47.64  Aligned_cols=85  Identities=15%  Similarity=0.109  Sum_probs=61.8

Q ss_pred             hCCCCCCEEecccCc-CCC----cCCccccCCCCCcEEeecCCCCCcc----cCcccCCCCCCCEEEccCCCCc-----c
Q 015671          269 ESLLRLEYLDLSDCK-RLK----SLPSSLCKLKSLGVLNLYGCSNLQR----LPECLGQLSSPITLGLTETNIE-----R  334 (403)
Q Consensus       269 ~~l~~L~~L~l~~~~-~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~-----~  334 (403)
                      ...+.|+.|+++++. +..    .+...+...++|++|++++|.+...    +...+...++++.+++.+|.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            567899999998743 322    1223456788999999999977543    3344566889999999999987     3


Q ss_pred             cChhhhcCCCCCEEeccCC
Q 015671          335 IPESIIQHFVLRYLLLSYS  353 (403)
Q Consensus       335 l~~~~~~~~~L~~L~l~~c  353 (403)
                      +...+...++|+.++|..|
T Consensus        94 l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCC
T ss_pred             HHHHHHhCccccEEeeccC
Confidence            4456778899998777644