Citrus Sinensis ID: 015678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MGVLVGFLRVGILGSQFQSESKAFALFIRWRILHLRKNYRHWKLHSMDLDLQELGFKFLAPMTSICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Secondary Structure (PSIPRED)
ccEEEcEEEcccccccccccccccEEEEEEEEEEccccEEEEEEEEEEcccccccEEEEccccEEEEEEccccccEEccccccEEcccEEcccccccccccccccHHHHHHHcccEEEEccccEEEEEcccccccccccccEEEEEEEEEEEEcccccccccccccccccccccccccEEEEcccEEEEEEEEccEEEEEcccccccccccccccccccEEEEEcccccccccEEEEEcccccccccccccccEEEEEEEEccEEEEEEcccccEEEEEEEccEEEEEEEcccEEEEEEEEEcccccEEEcccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEcEEEEEEEccccccccEEEEccHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccHHHccccccHHHHccHHccccccEEEcccccccccccccHcHEEcccccccccccccccccccHHHHHHHHHcccEEcccccccEEEccccccccccccEEEEEEEEEccccccccccccccccccHHHccccccccEEEEEccEEEEEEEEccEEEEEccccEEEEccccccccccEEEEEEcccccccccEEEEEccccccccccccccEEEEEEEEEccEEEEEEEcccEEEEEEccccEEEEEEEccEEEEEEEEEccccccEcccccccccccHHHHHccccEEEEEEEEEEccccccEEEEEEcccccEEEEcccccccccccccccHHHHHHHccccccHHHHHccccccccccc
Coil and Loop (DISEMBL)
MGVLVGFLRVgilgsqfqSESKAFALFIRWRILHLRKNYrhwklhsmdLDLQELGFKFLAPMTSICAITLKSLQtfgevsrhelmlgntfradkgsqpptkevppqefnrrvlegfqvtplwhqgcihddgrtNFAETVKSARWeystrpvygwgnvgskqnstagwlaafpvfephwqicmagglstgwiewdgerfefqdapsyseknwggafprkwFWVQCNVFEGATGEValtaggglrqlpvldsfeNAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELkattkypgttlraptseaglapackdtcfGELTLQLWERRydgtkgkmiLDVTSDMAAlevgggpwfntwkaktatpellrrtlnvpvdvdglfgfvpffkppgl
Flexible Loop (DISEMBL)
MGVLVGFLRVGILGSQFQSESKAFALFIRWRILHLRKNYRHWKLHSMDLDLQELGFKFLAPMTSICAITLKSLQTFGEVSRHELMLGntfradkgsqpptkevppqefNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFgfvpffkppgl
Low Complexity Region (SEG)
MGVLVGFLRVGILGSQFQSESKAFALFIRWRILHLRKNYRHWKLHSMDLDLQELGFKFLAPMTSICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Disordered region (IsUnstruct)
**VLVGFLRVGILGSQFQSESKAFALFIRWRILHLRKNYRHWKLHSMDLDLQELGFKFLAPMTSICAITLKSLQTFGEVSRHELMLGN*********************RRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFF*****
Disordered Region (DISOPRED)
*GVLVGFLRVGILGSQFQSESKAFALFIRWRILHLRKNYRHWKLHSMDLDLQELGFKFLAPMTSICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA**ELLRRTLNVPVDVDGLFGFVPFFKPPG*
Disordered Region (DISEMBL)
MGVLVGFLRVGILGSQFQSESKAFALFIRWRILHLRKNYRHWKLHSMDLDLQELGFKFLAPMTSICAITLKSLQTFGEVSRHELMLGNTFRA************PQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Disordered Region (DISPRO)
*GVLVGFLRVGILGSQFQSESKAFALFIRWRILHLRKNYRHWKLHSMDLDLQELGFKFLAPMTSICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVLVGFLRVGILGSQFQSESKAFALFIRWRILHLRKNYRHWKLHSMDLDLQELGFKFLAPMTSICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q94FY7	488	Tocopherol cyclase, chlor	yes	no	0.836	0.690	0.724	1e-148
Q6K7V6	470	Probable tocopherol cycla	yes	no	0.833	0.714	0.690	1e-141
Q94FY8	474	Probable tocopherol cycla	N/A	no	0.833	0.708	0.678	1e-136

>sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1

 Score =  523 bits (1347), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/341 (72%), Positives = 286/341 (83%), Gaps = 4/341 (1%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           +C     S   +G+  RHEL+LGNTF A  G++ P KEVPP+EFNRRV EGFQ TP WHQ
Sbjct: 150 LCQYEQDSHNFWGD--RHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQ 207

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAG
Sbjct: 208 GHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAG 267

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQCNVFEGATGEVALTAGGGLRQ
Sbjct: 268 GLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 327

Query: 245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           LP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S WGYWY  AEN+ H+VEL+A T 
Sbjct: 328 LPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPWGYWYITAENENHVVELEARTN 387

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
             GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+KGK+IL+  S MAA+E+GGGP
Sbjct: 388 EAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGP 447

Query: 364 WFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WF TWK  T+ TPELL++ L VP+D++   G VPFFKPPGL
Sbjct: 448 WFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPPGL 488

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6K7V6|TOCC_ORYSJ Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE1 PE=2 SV=1

 Score =  501 bits (1289), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/339 (69%), Positives = 276/339 (81%), Gaps = 3/339 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  T KS   +G  SRHELMLGNTF  + GS PP  EVPPQEF+ RVLEGFQVTP+WHQ
Sbjct: 135 ICQFTEKSNNFWG--SRHELMLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTPIWHQ 192

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGR+ +   V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMAG
Sbjct: 193 GFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAG 252

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEWDGERFEF++APSYSEKNWG  FPRKW+WVQCNVF GA+GEVALTA GGLR+
Sbjct: 253 GLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRK 312

Query: 245 LPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKY 304
           + + +++E+ ++IGIHY+G  YEFVPW G VSW+I+ WG+W  + EN+ H+VE++ATTK 
Sbjct: 313 IGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKE 372

Query: 305 PGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPW 364
           PGT LRAPT EAGL PACKDTC+G+L LQ+WE+R DG KGKMILD TS+MAALEVGGGPW
Sbjct: 373 PGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPW 432

Query: 365 FNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           FN WK  T + E++   +   VDV+ LF  +PF KPPGL
Sbjct: 433 FNGWKGTTVSNEIVNNVVGTQVDVESLFP-IPFLKPPGL 470

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94FY8|TOCC_MAIZE Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1

 Score =  486 bits (1252), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/339 (67%), Positives = 276/339 (81%), Gaps = 3/339 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  + KS   +G  SRHELMLGNTF ++K S PP  EVPPQ+F+RRVLEG QVTP+WHQ
Sbjct: 139 ICQFSEKSNNFWG--SRHELMLGNTFISNKESTPPQGEVPPQDFSRRVLEGLQVTPIWHQ 196

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGR+N+   V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMA 
Sbjct: 197 GFIRDDGRSNYVPNVQTARWEYSTRPVYGWGDVKSKQLSTAGWLAAFPFFEPHWQICMAR 256

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEWDGERFEF++APSYSEKNWGG FPRKW+W+QCNVF GA+GEV+LTA GGLR+
Sbjct: 257 GLSTGWIEWDGERFEFENAPSYSEKNWGGGFPRKWYWIQCNVFPGASGEVSLTAAGGLRK 316

Query: 245 LPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKY 304
           + + D++E+ ++IGIHY+G  +EFVPW G VSW+I  WG W  + EN+TH+VE++ATT  
Sbjct: 317 IGLGDTYESPSLIGIHYEGQFFEFVPWTGTVSWDIGLWGLWKMSGENKTHLVEIEATTAE 376

Query: 305 PGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPW 364
            GT LRAPT EAGL PACKDTC+G+L LQLWE++YDG+KG+MILD TS+MAALEVGGGPW
Sbjct: 377 SGTALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPW 436

Query: 365 FNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           FN WK  T   E++   +  PVDV+ L   +PF KPPGL
Sbjct: 437 FNGWKGTTVVNEVVNNIVGTPVDVESLLP-IPFLKPPGL 474

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
219842174	508	tocopherol cyclase [Hevea brasiliensis]	0.836	0.663	0.797	1e-161
33188419	515	tocopherol cyclase [Eucalyptus gunnii]	0.836	0.654	0.779	1e-158
255551000	505	Tocopherol cyclase, chloroplast precurso	0.836	0.667	0.764	1e-157
225429977	502	PREDICTED: tocopherol cyclase, chloropla	0.836	0.671	0.764	1e-156
356507907	489	PREDICTED: tocopherol cyclase, chloropla	0.836	0.689	0.755	1e-154
356515597	480	PREDICTED: tocopherol cyclase, chloropla	0.836	0.702	0.752	1e-154
388502842	479	unknown [Medicago truncatula]	0.836	0.703	0.75	1e-151
159792908	494	chloroplast tocopherol cyclase [Sesamum	0.836	0.682	0.738	1e-150
449511741	419	PREDICTED: tocopherol cyclase, chloropla	0.836	0.804	0.741	1e-150
377657553	490	tocopherol cyclase [Brassica napus]	0.836	0.687	0.744	1e-150

>gi|219842174|dbj|BAH10644.1| tocopherol cyclase [Hevea brasiliensis]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/340 (79%), Positives = 302/340 (88%), Gaps = 3/340 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  + +S   +G  SRHELMLGNTF A+KG QPP+KEVPPQEFNR V EGFQVTPLW+Q
Sbjct: 171 ICQYSEESQNFWG--SRHELMLGNTFVAEKGMQPPSKEVPPQEFNRMVSEGFQVTPLWNQ 228

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGR+++ +TVK+ARWEYSTRPVYGWGNVGSKQ STAGWLAAFPVFEPHWQICMA 
Sbjct: 229 GFIRDDGRSDYVKTVKTARWEYSTRPVYGWGNVGSKQQSTAGWLAAFPVFEPHWQICMAA 288

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEWDGERFEF+DAPSYSEKNWGG FPRKWFW QCN FEGA+GEVALT GGGLRQ
Sbjct: 289 GLSTGWIEWDGERFEFKDAPSYSEKNWGGGFPRKWFWAQCNTFEGASGEVALTVGGGLRQ 348

Query: 245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           LP L ++FENAA+IG+HYDGI YEFVPW GVV+WEIS WGYW+  AEN+TH+VEL+ATTK
Sbjct: 349 LPGLTETFENAALIGVHYDGIFYEFVPWKGVVTWEISPWGYWFVTAENETHLVELEATTK 408

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
            PGTTLRAPT+EAGLAPACKDTC+G L L+LWERRYDG+KGK+ILDVTSDMAA+EVGGGP
Sbjct: 409 DPGTTLRAPTTEAGLAPACKDTCYGVLKLKLWERRYDGSKGKIILDVTSDMAAVEVGGGP 468

Query: 364 WFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WFNTWK KT TPELL R L VP+DVDG+F F+P FKPPGL
Sbjct: 469 WFNTWKGKTTTPELLSRALRVPLDVDGIFNFLPLFKPPGL 508

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33188419|gb|AAP97931.1| tocopherol cyclase [Eucalyptus gunnii]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 265/340 (77%), Positives = 299/340 (87%), Gaps = 3/340 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  + +S   +G  SRHEL+LGNTF A+K ++PP KEVPPQEFN+RV EGFQV+PLWHQ
Sbjct: 178 ICQFSEESANFWG--SRHELILGNTFMAEKDAKPPNKEVPPQEFNKRVAEGFQVSPLWHQ 235

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGR+++ ETVK+ARWEYSTRPVYGWGN GS+Q STAGWLAAFPVFEPHWQICMAG
Sbjct: 236 GFIRDDGRSDYVETVKTARWEYSTRPVYGWGNAGSQQKSTAGWLAAFPVFEPHWQICMAG 295

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEW+GERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGA GEVALTA GGLRQ
Sbjct: 296 GLSTGWIEWEGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGAKGEVALTAAGGLRQ 355

Query: 245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           LP L ++FENAA+IG+HYDGI YEFVPWNGVVSWE++ WG WY  A+N+TH V ++ATTK
Sbjct: 356 LPGLTETFENAALIGVHYDGIFYEFVPWNGVVSWEVAPWGSWYMEADNETHKVVVEATTK 415

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
             GTTLRAPT EAGLAPAC DTCFG+L LQ+WERRYDG+KGK+ILDVTS+MAA+E+GGGP
Sbjct: 416 DRGTTLRAPTVEAGLAPACNDTCFGDLKLQIWERRYDGSKGKLILDVTSNMAAVEIGGGP 475

Query: 364 WFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WF+TWK KT+TPELL R L VPVDVDG FG  PF KPPGL
Sbjct: 476 WFSTWKGKTSTPELLSRALRVPVDVDGFFGLAPFLKPPGL 515

Source: Eucalyptus gunnii

Species: Eucalyptus gunnii

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551000|ref|XP_002516548.1| Tocopherol cyclase, chloroplast precursor, putative [Ricinus communis] gi|223544368|gb|EEF45889.1| Tocopherol cyclase, chloroplast precursor, putative [Ricinus communis]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 260/340 (76%), Positives = 299/340 (87%), Gaps = 3/340 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  + +S   +G  SRHEL+LG+TF  +KG QPPTKEVPP+EFN+RV EGFQVTPLWHQ
Sbjct: 168 ICQCSEESQNFWG--SRHELVLGSTFVPEKGMQPPTKEVPPEEFNKRVSEGFQVTPLWHQ 225

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGR+++ ETVK+A WEYSTRP+YGWG+V SKQ STAGWLAA PVFEPHWQICMAG
Sbjct: 226 GFIRDDGRSDYVETVKTASWEYSTRPIYGWGDVESKQKSTAGWLAALPVFEPHWQICMAG 285

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEWDGER+EFQDAPSYSEKNWGG FPRKWFWVQCNVFEGATGE+ALT GGGLRQ
Sbjct: 286 GLSTGWIEWDGERYEFQDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEIALTVGGGLRQ 345

Query: 245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           LP L ++FENAA++G+HYDG  YEFVPWNGVV+WE+S WG+W+F AEN+TH+VEL+ATTK
Sbjct: 346 LPGLTENFENAALVGVHYDGNFYEFVPWNGVVNWEVSPWGHWFFTAENETHLVELEATTK 405

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
            PGT L APT+E GLAPAC+DTCF +L LQ+WERRYDG+KGK+ILDVTSDMAA+EVGGGP
Sbjct: 406 DPGTPLLAPTAEVGLAPACRDTCFADLKLQMWERRYDGSKGKLILDVTSDMAAVEVGGGP 465

Query: 364 WFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WFNTWK KT+TPELL R L VPVD+D +  F+P FKPPGL
Sbjct: 466 WFNTWKGKTSTPELLSRALQVPVDMDEILSFLPLFKPPGL 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429977|ref|XP_002281424.1| PREDICTED: tocopherol cyclase, chloroplastic [Vitis vinifera] gi|296081864|emb|CBI20869.3| unnamed protein product [Vitis vinifera]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/340 (76%), Positives = 296/340 (87%), Gaps = 3/340 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  + +S   +G   RHELMLG+TF   K  +PP KEVPP+EFNRRV+EGFQVTPLWHQ
Sbjct: 165 ICQFSEESTNFWG--CRHELMLGHTFVGRKDLRPPNKEVPPEEFNRRVIEGFQVTPLWHQ 222

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGR+N+ +TVK+ARWEYSTRP+YGWGNVGSKQ STAGWLAAFPVFEPHWQICMAG
Sbjct: 223 GFIRDDGRSNYVDTVKTARWEYSTRPIYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAG 282

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEWDGER+EF++APSYSEKNWGG FPRKWFWVQCN FEGA GEV+LTA GGLR+
Sbjct: 283 GLSTGWIEWDGERYEFENAPSYSEKNWGGGFPRKWFWVQCNAFEGADGEVSLTAAGGLRK 342

Query: 245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           +P L + FENAA++G+HYDGI YEFVPWNGVVSWEI+QWGYWY +AEN++HMVEL ATTK
Sbjct: 343 IPGLTEVFENAALVGVHYDGIFYEFVPWNGVVSWEINQWGYWYISAENESHMVELVATTK 402

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
            PGTTLRAPT+EAGLAPACKD C G L LQ+W+R ++G+KGKMILDVTS+MAA+EVGGGP
Sbjct: 403 DPGTTLRAPTTEAGLAPACKDNCSGALKLQIWKRTFNGSKGKMILDVTSNMAAVEVGGGP 462

Query: 364 WFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WFNTWK KTA PEL+R  L VPVD D +FG  PFFKPPGL
Sbjct: 463 WFNTWKGKTAAPELVRLALQVPVDEDAIFGLAPFFKPPGL 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507907|ref|XP_003522704.1| PREDICTED: tocopherol cyclase, chloroplastic-like [Glycine max]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 257/340 (75%), Positives = 297/340 (87%), Gaps = 3/340 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  + +S   +G  SRHELMLGNTF +++ S+PP KEVPPQEFN RVLEGFQVTPLWHQ
Sbjct: 152 ICQYSPQSQFFWG--SRHELMLGNTFVSNQNSKPPNKEVPPQEFNDRVLEGFQVTPLWHQ 209

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGR+N+ ETVK+ARWEYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQICMAG
Sbjct: 210 GFIRDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAG 269

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEWDGER EF +APSYSEKNWGG FPRKWFWVQCNVFEGA+GE+ALTA GGLRQ
Sbjct: 270 GLSTGWIEWDGERIEFDNAPSYSEKNWGGGFPRKWFWVQCNVFEGASGEIALTAAGGLRQ 329

Query: 245 LP-VLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           +P + ++FENAA+IGIHY G  YEFVPWNGVV+WE++ WGYW+ +A+N  ++VEL+ATT+
Sbjct: 330 IPGITETFENAALIGIHYGGNFYEFVPWNGVVNWEVTTWGYWFMSADNGKYVVELEATTE 389

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
            PGTTLRAPT+EAG APACKDTCFG L LQ+WERRYDG+KGK+ILDV+S+MAALEVGGGP
Sbjct: 390 DPGTTLRAPTAEAGFAPACKDTCFGNLKLQMWERRYDGSKGKIILDVSSNMAALEVGGGP 449

Query: 364 WFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WFNTWK KT+TP  L R L +P+DV+G+F  VP FKPPGL
Sbjct: 450 WFNTWKGKTSTPAALSRVLELPIDVEGIFNPVPLFKPPGL 489

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515597|ref|XP_003526485.1| PREDICTED: tocopherol cyclase, chloroplastic-like [Glycine max]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 256/340 (75%), Positives = 299/340 (87%), Gaps = 3/340 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  + +S   +G  SRHELMLGNTF  ++ S+PP KEVPPQEFN RVLEGFQV+PLWHQ
Sbjct: 143 ICQFSPESQFFWG--SRHELMLGNTFVPNQNSKPPNKEVPPQEFNDRVLEGFQVSPLWHQ 200

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGR+N+ ETVK+ARWEYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQICMAG
Sbjct: 201 GFIRDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAG 260

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEWDG+R EF +APSYSEKNWGG FPRKWFWVQCNVFEGA+GE+ALTA GGLRQ
Sbjct: 261 GLSTGWIEWDGKRIEFDNAPSYSEKNWGGGFPRKWFWVQCNVFEGASGEIALTAAGGLRQ 320

Query: 245 LP-VLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           +P + ++FENAA+IGIHY GI YEFVPWNGVV+WE++ WGYW+ +A+N  ++VE++ATT+
Sbjct: 321 IPGIAETFENAALIGIHYGGIFYEFVPWNGVVNWEVTTWGYWFMSADNGRYVVEIEATTE 380

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
            PGTTLRAPT+EAGLAPACKDTCFG+L LQ+WERRYDG+KGK+ILDV+S+MAALEVGGGP
Sbjct: 381 DPGTTLRAPTAEAGLAPACKDTCFGDLKLQMWERRYDGSKGKIILDVSSNMAALEVGGGP 440

Query: 364 WFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WFNTWK KT+TP  L R L +P+DV+G+F  VP FKPPGL
Sbjct: 441 WFNTWKGKTSTPAALSRVLELPIDVEGIFNPVPLFKPPGL 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502842|gb|AFK39487.1| unknown [Medicago truncatula]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/340 (75%), Positives = 295/340 (86%), Gaps = 3/340 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  T +S   +G  SR+ELMLGNTF A + S+PP KEVPP+EFN +VLEGFQVTPLW+Q
Sbjct: 142 ICQYTPQSPNFWG--SRNELMLGNTFAAKQNSKPPNKEVPPKEFNDKVLEGFQVTPLWNQ 199

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDG++++ ETVK+ RWEYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQICMAG
Sbjct: 200 GFICDDGKSDYVETVKTTRWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAG 259

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEWDGER EF++APSYSEKNWGGAFPRKWFW QCNVFEGA+GE+ALTA GGLRQ
Sbjct: 260 GLSTGWIEWDGERIEFENAPSYSEKNWGGAFPRKWFWAQCNVFEGASGEIALTAAGGLRQ 319

Query: 245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           +P L ++FENAA+IGIHY G  YEFVPWNGVVSWE++ WGYW+ +A+N  ++VEL+ATT+
Sbjct: 320 IPGLTETFENAALIGIHYGGKFYEFVPWNGVVSWEVATWGYWFMSADNGNYVVELEATTE 379

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
            PGTTLRAPTSEAGL+ ACKDTCFG L L+LWERRYDG+KGK+ILDVTSDMAALEVGGGP
Sbjct: 380 DPGTTLRAPTSEAGLSQACKDTCFGILKLKLWERRYDGSKGKIILDVTSDMAALEVGGGP 439

Query: 364 WFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WFNTWK KT+TP +  R + +PVDVDGL+   P FKPPGL
Sbjct: 440 WFNTWKGKTSTPPVFSRAIGLPVDVDGLYNLFPLFKPPGL 479

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|159792908|gb|ABW98674.1| chloroplast tocopherol cyclase [Sesamum indicum]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 251/340 (73%), Positives = 291/340 (85%), Gaps = 3/340 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  T +S   +G  +R EL LGNTF A +  QPP KE+PPQEFNRRV+EGFQVTPLWHQ
Sbjct: 157 ICQYTEESQNFWG--NRDELTLGNTFVAQEKMQPPKKEIPPQEFNRRVVEGFQVTPLWHQ 214

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGRTN+ E VK+ARW YSTRPVYGWGNVGSKQ STAGWLAAFPVFEPHWQICMAG
Sbjct: 215 GFIRDDGRTNYTEIVKTARWAYSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAG 274

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEWD + +EF++APSYSEKNWG  FPRKWFWVQCNVFEGA GEVALTA GGLRQ
Sbjct: 275 GLSTGWIEWDDKLYEFKNAPSYSEKNWGAGFPRKWFWVQCNVFEGADGEVALTAAGGLRQ 334

Query: 245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           +P L ++FENAA+ G+HYDG  YEFVPWNGVV+WEI+ WG+W  +AEN+ + VEL+ATTK
Sbjct: 335 VPGLSETFENAALFGVHYDGAFYEFVPWNGVVNWEIAPWGHWSISAENEMYTVELEATTK 394

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
            PGTTLRAPT+EAGLAP CKDTCF +L L+LWERRYDG++GK+ILDVTS+MAA+EVGGGP
Sbjct: 395 DPGTTLRAPTTEAGLAPVCKDTCFADLRLRLWERRYDGSEGKVILDVTSNMAAVEVGGGP 454

Query: 364 WFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WF TWK KT TPE+++R + +PVDV+G+FG  PF +PPGL
Sbjct: 455 WFTTWKGKTQTPEIIKRVVGLPVDVEGMFGLAPFLRPPGL 494

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511741|ref|XP_004164041.1| PREDICTED: tocopherol cyclase, chloroplastic-like [Cucumis sativus]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/340 (74%), Positives = 288/340 (84%), Gaps = 3/340 (0%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           IC  + +S   +G  SRHEL LGN+F   +G +PP KEV P+EFN++V+EGFQVTPLWHQ
Sbjct: 82  ICQYSEESQNFWG--SRHELSLGNSFATKEGFKPPNKEVDPEEFNKKVVEGFQVTPLWHQ 139

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGRTN+ ETVK+ARWEYS+RPVYGWGNVGSKQ STAGWLAAFPVFEPHWQICMAG
Sbjct: 140 GFIRDDGRTNYLETVKTARWEYSSRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAG 199

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEW+ ERFEF +APSYSEKNWGG FPRKWFWVQCNVFEGA GEVALTAGGGLRQ
Sbjct: 200 GLSTGWIEWEDERFEFVNAPSYSEKNWGGGFPRKWFWVQCNVFEGARGEVALTAGGGLRQ 259

Query: 245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           LP L ++FENAA++G+HYDG  YEFVPWNG V+WEI+ WGYWY AAEN+TH VEL+  T 
Sbjct: 260 LPGLTETFENAALVGVHYDGTFYEFVPWNGTVNWEINTWGYWYIAAENETHKVELEGKTD 319

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
            PG+ LRAPTSE GL  ACK TCFG L LQ+WERR+DG+KGK++LDVTS+MAALEVGGGP
Sbjct: 320 EPGSPLRAPTSECGLDTACKGTCFGTLKLQIWERRFDGSKGKIVLDVTSNMAALEVGGGP 379

Query: 364 WFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WFNTWK +T TPE+L+R L  P+DVD  F  +P FKPPGL
Sbjct: 380 WFNTWKGETTTPEILKRALTTPIDVDQAFNLLPLFKPPGL 419

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657553|gb|AFB74210.1| tocopherol cyclase [Brassica napus]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/341 (74%), Positives = 292/341 (85%), Gaps = 4/341 (1%)

Query: 65  ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
           +C  T  S   +G+  RHEL+LGNTF A  G++ P KEVPP+EFNRRV EGFQ TP WHQ
Sbjct: 152 LCQYTEDSHNFWGD--RHELVLGNTFSAMPGARSPDKEVPPEEFNRRVSEGFQATPFWHQ 209

Query: 125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
           G I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAG
Sbjct: 210 GHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGTKQKSTAGWPAAFPVFEPHWQICMAG 269

Query: 185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
           GLSTGWIEW  ERFEF+DAPSYSEKNWGG FPRKWFWVQCNVFEGA GE+ALTA GGLRQ
Sbjct: 270 GLSTGWIEWGDERFEFRDAPSYSEKNWGGGFPRKWFWVQCNVFEGAKGEIALTAAGGLRQ 329

Query: 245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
           LP L ++FENAA++ +HYDG LYEFVPWNGVVSWE+S WGYWY  AEN+THMVEL+A T 
Sbjct: 330 LPGLTETFENAALVCVHYDGKLYEFVPWNGVVSWEMSPWGYWYMTAENETHMVELEARTN 389

Query: 304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
             GT LRAPTSEAGLA ACKD+C+GEL LQ+WERRYDG+KGK+I++  S MAA+E+GGGP
Sbjct: 390 EAGTPLRAPTSEAGLATACKDSCYGELKLQIWERRYDGSKGKVIMEAKSSMAAVEIGGGP 449

Query: 364 WFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
           WF TWK  T+ TPELL+R+L VP+D++ +FG+VPFFKPPGL
Sbjct: 450 WFGTWKGDTSNTPELLKRSLQVPLDLESVFGWVPFFKPPGL 490

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2125657	488	VTE1 "VITAMIN E DEFICIENT 1" [	0.836	0.690	0.724	1.6e-143
UNIPROTKB|Q6K7V6	470	VTE1 "Probable tocopherol cycl	0.833	0.714	0.690	9.5e-137

TAIR|locus:2125657 VTE1 "VITAMIN E DEFICIENT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1403 (498.9 bits), Expect = 1.6e-143, P = 1.6e-143
 Identities = 247/341 (72%), Positives = 286/341 (83%)

Query:    65 ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
             +C     S   +G+  RHEL+LGNTF A  G++ P KEVPP+EFNRRV EGFQ TP WHQ
Sbjct:   150 LCQYEQDSHNFWGD--RHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQ 207

Query:   125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
             G I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAG
Sbjct:   208 GHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAG 267

Query:   185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
             GLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQCNVFEGATGEVALTAGGGLRQ
Sbjct:   268 GLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 327

Query:   245 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTK 303
             LP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S WGYWY  AEN+ H+VEL+A T 
Sbjct:   328 LPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPWGYWYITAENENHVVELEARTN 387

Query:   304 YPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGP 363
               GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+KGK+IL+  S MAA+E+GGGP
Sbjct:   388 EAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGP 447

Query:   364 WFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
             WF TWK  T+ TPELL++ L VP+D++   G VPFFKPPGL
Sbjct:   448 WFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPPGL 488

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0009706 "chloroplast inner membrane" evidence=TAS

GO:0009976 "tocopherol cyclase activity" evidence=IMP;IDA

GO:0010189 "vitamin E biosynthetic process" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009644 "response to high light intensity" evidence=IEP

GO:0006631 "fatty acid metabolic process" evidence=IGI

GO:0015994 "chlorophyll metabolic process" evidence=IGI

GO:0016122 "xanthophyll metabolic process" evidence=IMP

GO:0010287 "plastoglobule" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

UNIPROTKB|Q6K7V6 VTE1 "Probable tocopherol cyclase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
 Identities = 234/339 (69%), Positives = 276/339 (81%)

Query:    65 ICAITLKSLQTFGEVSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQ 124
             IC  T KS   +G  SRHELMLGNTF  + GS PP  EVPPQEF+ RVLEGFQVTP+WHQ
Sbjct:   135 ICQFTEKSNNFWG--SRHELMLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTPIWHQ 192

Query:   125 GCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAG 184
             G I DDGR+ +   V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMAG
Sbjct:   193 GFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAG 252

Query:   185 GLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ 244
             GLSTGWIEWDGERFEF++APSYSEKNWG  FPRKW+WVQCNVF GA+GEVALTA GGLR+
Sbjct:   253 GLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRK 312

Query:   245 LPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKY 304
             + + +++E+ ++IGIHY+G  YEFVPW G VSW+I+ WG+W  + EN+ H+VE++ATTK 
Sbjct:   313 IGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKE 372

Query:   305 PGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPW 364
             PGT LRAPT EAGL PACKDTC+G+L LQ+WE+R DG KGKMILD TS+MAALEVGGGPW
Sbjct:   373 PGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPW 432

Query:   365 FNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 403
             FN WK  T + E++   +   VDV+ LF  +PF KPPGL
Sbjct:   433 FNGWKGTTVSNEIVNNVVGTQVDVESLFP-IPFLKPPGL 470


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.462    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      403       403   0.00099  117 3  11 22  0.38    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  629 (67 KB)
  Total size of DFA:  322 KB (2160 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.45u 0.16s 30.61t   Elapsed:  00:00:01
  Total cpu time:  30.45u 0.16s 30.61t   Elapsed:  00:00:01
  Start:  Mon May 20 15:42:13 2013   End:  Mon May 20 15:42:14 2013

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94FY7	TOCC_ARATH	No assigned EC number	0.7243	0.8362	0.6905	yes	no
Q6K7V6	TOCC_ORYSJ	No assigned EC number	0.6902	0.8337	0.7148	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032449001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (502 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00013955001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (345 aa)	•		•	•		•	•		0.989
	HGGT	SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (445 aa)	•		•			•	•		0.963
	GSVIVG00032719001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (373 aa)	•		•			•	•		0.961
	GSVIVG00020095001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (340 aa)						•	•		0.920
	GSVIVG00023813001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (340 aa)						•	•		0.920
	GSVIVG00025454001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (323 aa)	•		•			•	•		0.695
	GSVIVG00022014001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (291 aa)			•	•					0.527
	GSVIVG00019398001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (323 aa)			•	•					0.525
	GSVIVG00011274001	SubName- Full=Chromosome undetermined scaffold_2411, whole genome shotgun sequence; Flags- Frag [...] (182 aa)			•				•		0.512
	GSVIVG00038227001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (216 aa)			•				•		0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
PLN02818	403	PLN02818, PLN02818, tocopherol cyclase	0.0
pfam14249	331	pfam14249, Tocopherol_cycl, Tocopherol cyclase	1e-159

>gnl|CDD|215438 PLN02818, PLN02818, tocopherol cyclase

 Score =  547 bits (1412), Expect = 0.0
 Identities = 221/315 (70%), Positives = 255/315 (80%), Gaps = 3/315 (0%)

Query: 80  SRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETV 139
           SRHEL LGNTF    GS PP  EVPP EF RRV EGFQVTP WHQG + DDGR+ +A+TV
Sbjct: 90  SRHELALGNTFAPKNGSTPPRSEVPPDEFYRRVEEGFQVTPFWHQGRLRDDGRSPYAKTV 149

Query: 140 KSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFE 199
           K+ARWEYSTRPVYGWG+VGSKQ STAGWLAA PVFEPHWQICMA GL+TGWIEW GER+E
Sbjct: 150 KTARWEYSTRPVYGWGDVGSKQKSTAGWLAALPVFEPHWQICMAHGLATGWIEWGGERYE 209

Query: 200 FQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIG 258
           F+DAPSYSEKNWGG FP KWFWVQCNVF+GA+G ++LTAGGGLR LP+L   FE  A+IG
Sbjct: 210 FEDAPSYSEKNWGGGFPSKWFWVQCNVFDGASG-LSLTAGGGLRGLPLLPGVFEEVALIG 268

Query: 259 IHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATT-KYPGTTLRAPTSEAG 317
           +HYDG  YEFVPWNG V W++S WG W   AEN+TH VEL+ATT K PGT LRAPT++ G
Sbjct: 269 VHYDGKFYEFVPWNGEVEWDVSPWGRWKLRAENETHEVELEATTAKEPGTVLRAPTTDVG 328

Query: 318 LAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPEL 377
           LAP C+DT  G+L LQLWER +DG+KGK+ILD TS MAA+EVGGGPW++TWK      E 
Sbjct: 329 LAPFCRDTFAGKLKLQLWERSWDGSKGKLILDATSSMAAVEVGGGPWWSTWKGTARMKEP 388

Query: 378 LRRTLNVPVDVDGLF 392
           L+  L +PVDV+ +F
Sbjct: 389 LKSLLGLPVDVESIF 403

Length = 403

>gnl|CDD|222624 pfam14249, Tocopherol_cycl, Tocopherol cyclase

 Score =  450 bits (1159), Expect = e-159
 Identities = 172/293 (58%), Positives = 210/293 (71%), Gaps = 19/293 (6%)

Query: 74  QTFGEV-----SRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIH 128
           +TF +V     SRH+L LG+  +     + P + +PPQEF RRV EG+Q T  W+QG I 
Sbjct: 53  RTFPDVKKFWASRHQLALGHWGK--TNLKLPPQYLPPQEFERRVQEGYQATATWNQGFIR 110

Query: 129 DDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLST 188
           D G      T ++ RWEYS RPVYGWG+VG  Q STAGWL+  P+FEP WQI MA GL+T
Sbjct: 111 DPG------TGETCRWEYSIRPVYGWGDVGRPQQSTAGWLSYLPIFEPGWQILMAHGLAT 164

Query: 189 GWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL 248
           GWIEW+G+R+EF++AP+YSEKNWGGAFPRKWFW+ CN FEG   ++ALTA GG RQ+   
Sbjct: 165 GWIEWNGKRYEFENAPAYSEKNWGGAFPRKWFWINCNSFEGE-PDLALTAAGGRRQVLWW 223

Query: 249 DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTT 308
              E+ A+IGIHY G  YEFVPWN  V+W+I+ WGYW+  AEN+ H VEL+ TT  PGT 
Sbjct: 224 --MESVALIGIHYQGKFYEFVPWNSQVTWQITPWGYWHMQAENERHEVELEGTTDEPGTP 281

Query: 309 LRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGG 361
           LRAPT E GL   C+DT  GEL LQLWER  DG+KGK+IL  TSD+A LEVGG
Sbjct: 282 LRAPTEE-GLQFLCRDTMKGELKLQLWER--DGSKGKVILKATSDLAGLEVGG 331

This family contains tocopherol cyclases. These enzymes are involved in the synthesis of tocopherols and tocotrienols (vitamin E). Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
PLN02818	403	tocopherol cyclase	100.0
PF14249	336	Tocopherol_cycl: Tocopherol cyclase	100.0
PF07143	312	CrtC: Hydroxyneurosporene synthase (CrtC); InterPr	96.47
PF10974	333	DUF2804: Protein of unknown function (DUF2804); In	94.58

>PLN02818 tocopherol cyclase

Probab=100.00  E-value=7.1e-116  Score=879.51  Aligned_cols=363  Identities=63%  Similarity=1.211  Sum_probs=350.7

Q ss_pred             eeeehhhhhhccccccceEeeccccc----------------ceecceeccC-CeeeEeecCCCCceeeecCcceEEecc
Q 015678           26 LFIRWRILHLRKNYRHWKLHSMDLDL----------------QELGFKFLAP-MTSICAITLKSLQTFGEVSRHELMLGN   88 (403)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~h~~~~~~----------------~~~~~qvl~~-d~y~~~~~~~~~~Fwa~~~~~~l~lG~   88 (403)
                      -+.|.+||+.+|++ .+|||+.||..                .-.++|||.. |+|+||++||+++|||  ++++|+|||
T Consensus        22 Wy~rvtlpe~~qsf-~fmysiedp~~~~~~~~~~~~~~~~~~~g~~aQilg~~d~y~~~~~~~~~~Fw~--~~~~l~lg~   98 (403)
T PLN02818         22 WYFKVSLPEVKQSF-AFMYSIEDPAFRERMSGLEELLHGSRFTGVGAQILGPDDKYLCQFTEDSTKFWG--SRHELALGN   98 (403)
T ss_pred             eEEEEEcCCCCceE-EEEEEeeCCccccccccchhhcCCCCCCCceeeeecCCCceEEEeCCCcccccc--cchhccccc
Confidence            57899999999999 99999999933                2299999986 6699999999999999  999999999


Q ss_pred             eecCCCCCCCCCCCCCchhhhhccccceeecccccceeeecCCCCccccccccceeeEeeeeeeeecCCCCCCCCccccc
Q 015678           89 TFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWL  168 (403)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~f~~~v~~g~q~t~~~~qG~~~d~~~~~~~~~~~~~~W~~~i~p~~gwG~~~~~~~~~mGwf  168 (403)
                      |+.++++.+.++++|+|++|+++|+||||+|++||||+|+|+++++|..||++|||+|+|+|+|||||++++|++|||||
T Consensus        99 ~~~~~~~~~~~~~~~~p~~f~~~v~~G~q~t~~~~qG~i~d~~~~~~~~~~~~~rw~y~~~p~~gwG~~~~~~~stmGwf  178 (403)
T PLN02818         99 TFAPKNGSTPPRSEVPPDEFYRRVEEGFQVTPFWHQGRLRDDGRSPYAKTVKTARWEYSTRPVYGWGDVGSKQKSTAGWL  178 (403)
T ss_pred             ccccccCCCCCcccCChHHHHHhhhcceeeccceecceecCCCCCccccccceEEEEEEeeeeeecCCCCCCCCCccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcceEEeecCcceEEEEEECCEEEEecCCceeccCCCCCCCCCCcEEEEeccCCCCCCceEEEEcccccccCcc
Q 015678          169 AAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL  248 (403)
Q Consensus       169 s~LP~mEchw~V~m~h~~asG~I~~NGk~~dF~~g~GY~EKNWG~SFP~~w~W~Qcn~F~~~~~~~sLt~AGG~~~Ip~l  248 (403)
                      ++||||||||||+||||+++|+|+|||++|+|++|+||+|||||+|||++|+|+|||+|+++++ +|||++||+|+||++
T Consensus       179 s~lP~fEp~wqVlmahg~asG~I~wnG~~yeF~~apgY~EKNWG~sFP~kWfWiQCN~F~~~~~-LalTagGg~r~IP~l  257 (403)
T PLN02818        179 AALPVFEPHWQICMAHGLATGWIEWGGERYEFEDAPSYSEKNWGGGFPSKWFWVQCNVFDGASG-LSLTAGGGLRGLPLL  257 (403)
T ss_pred             hhcccccCcceeeecCcEEEEEEEECCEEEEecCCCeeeEccCCCCCCcCeeeEecccCCCCCc-EEEEecCCcccCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999998 999999999999998


Q ss_pred             -cccccEEEEEEEECCEEEEEecCCccEEEEEeeceeEEEEEEeCcEEEEEEEEe-cCCCceEeCCCCCCCccccccccc
Q 015678          249 -DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATT-KYPGTTLRAPTSEAGLAPACKDTC  326 (403)
Q Consensus       249 -~~~~~~~ligl~~~Gk~yrFaty~ga~~~~v~~~g~w~i~~~n~~~~LeI~~~~-~~~g~~LrAP~~g~~M~~~c~ES~  326 (403)
                       .++++++||+|||+|++|||+||+|++.|++++|++|+|+++|++|+|+|++++ +.+++.|+||+.+.+|++.|+||+
T Consensus       258 ~~~fe~v~ligvh~~GkfYrFap~~g~v~w~v~pwg~W~i~a~n~~~~veIe~~~~~~~g~~LrAPt~~~gM~~~crESl  337 (403)
T PLN02818        258 PGVFEEVALIGVHYDGKFYEFVPWNGEVEWDVSPWGRWKLRAENETHEVELEATTAKEPGTVLRAPTTDVGLAPFCRDTF  337 (403)
T ss_pred             cccccceEEEEEEECCEEEEEEeecceEEEEEccCCcEEEEEECCCEEEEEEEEEcCCCCceEECCCCCCCCCchhhhcC
Confidence             889988899999999999999999999999999999999999999999999999 568999999998878999999999


Q ss_pred             cEEEEEEEEeeecCCCCceEEEEEeeceeEEeeeCCcccccccccccchHHHhhhcccceeccccc
Q 015678          327 FGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLF  392 (403)
Q Consensus       327 ~g~v~v~L~e~~~~g~~gklI~d~~s~~AglEiGG~pw~~~w~~~~~~~~~~~~~~~~~~~~~~~~  392 (403)
                      .|+++|+|++++++++++++|+|++|++||||+||+||+++|+++++|+|||++|+++|||||+|+
T Consensus       338 ~G~l~l~L~~~~~~~~~gk~I~d~~S~~AGLEvGGgpW~~~W~~~~~~~~~~~~~~~~p~d~~~~~  403 (403)
T PLN02818        338 AGKLKLQLWERSWDGSKGKLILDATSSMAAVEVGGGPWWSTWKGTARMKEPLKSLLGLPVDVESIF  403 (403)
T ss_pred             CceEEEEEEecccCCCCCcEEEEeccCceeEEecCCcCcccccccccchhhHHHHhCCccchhhcC
Confidence            999999999987778888999999999999999999999999999999999999999999999985

>PF14249 Tocopherol_cycl: Tocopherol cyclase

Probab=100.00  E-value=5.7e-95  Score=721.66  Aligned_cols=321  Identities=46%  Similarity=0.955  Sum_probs=300.8

Q ss_pred             eeeehhhhhhccccccceEeecccccce----ecceeccC-CeeeEeecCCCCceeeecCcceEEecceecCC---CCCC
Q 015678           26 LFIRWRILHLRKNYRHWKLHSMDLDLQE----LGFKFLAP-MTSICAITLKSLQTFGEVSRHELMLGNTFRAD---KGSQ   97 (403)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~----~~~qvl~~-d~y~~~~~~~~~~Fwa~~~~~~l~lG~~~~~~---~~~~   97 (403)
                      -|.|.+||+.++++ ..||++.||....    .++|||.. |+|+||++|++++|||  ++++|+||+.+.+.   ++++
T Consensus         8 Wy~rvtlp~~~~sf-~~mysi~dp~~~~~~~g~~aqilg~~d~y~~~~~~~~~~fw~--~~~~~~lg~~~~~~~~~~~~~   84 (336)
T PF14249_consen    8 WYFRVTLPEIGQSF-AFMYSIEDPIGGQPYSGGAAQILGPDDKYLCRTFPDVQKFWA--SRHELALGNLFLGHWGKTDLK   84 (336)
T ss_pred             eEEEEEcCCCCcEE-EEEEEEEcCCCCCCcCCceeEEecCCCeEEEEECCCCCceEE--eccccccCceeeeecccCCCC
Confidence            46799999999999 9999999998774    99999986 5699999999999999  99976666665554   4666


Q ss_pred             CCCCCCCchhhhhccccceeecccccceeeecCCCCccccccccceeeEeeeeeeeecCCCCCCCCcccccccCCCCCcc
Q 015678           98 PPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPH  177 (403)
Q Consensus        98 ~~~~~l~~~~f~~~v~~g~q~t~~~~qG~~~d~~~~~~~~~~~~~~W~~~i~p~~gwG~~~~~~~~~mGwfs~LP~mEch  177 (403)
                      .++++|+|++|+++|+||||+|+++|||+|+|+++.++|      ||+|+|+|+++|||++++|++|||||++||+||||
T Consensus        85 ~~~~~~~p~~f~~~v~~g~q~t~~~~qg~~~~~~~~~~~------~w~y~i~p~~~wg~~~~~~~~~mGwfs~lP~~Ec~  158 (336)
T PF14249_consen   85 PPPGYLPPQEFERRVQEGYQVTATWNQGIIRDPGTGKTC------RWDYSIKPIYGWGNSGRLQKSIMGWFSFLPFFECY  158 (336)
T ss_pred             CCccccChHHhHhhhhccceeccccccCCccCCCCccEE------EEEEEEcccccCCCccccCCCccchHhhccccCCC
Confidence            689999999999999999999999999999999988777      99999999999999999999999999999999999


Q ss_pred             eEEeecCcceEEEEEECCEEEEecCCceeccCCCCCCCCCCcEEEEeccCCCCCCceEEEEcccccccCcccccccEEEE
Q 015678          178 WQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMI  257 (403)
Q Consensus       178 w~V~m~h~~asG~I~~NGk~~dF~~g~GY~EKNWG~SFP~~w~W~Qcn~F~~~~~~~sLt~AGG~~~Ip~l~~~~~~~li  257 (403)
                      |||+||||+++|+|+|||++|+|++|+||+|||||+|||++|+|+|||+|+++++ ++|+++||+++||++  .+.++||
T Consensus       159 w~V~~~~g~asG~i~~nG~~~~F~~g~gY~EKNWG~sFP~~W~W~QcN~F~~~~~-~slt~sgg~~~i~~~--~e~~~li  235 (336)
T PF14249_consen  159 WQVLMAHGLASGWIEWNGKRYDFTGGPGYIEKNWGGSFPSKWFWIQCNSFDGEPD-VSLTASGGRRPIPGL--TESVGLI  235 (336)
T ss_pred             chheecCcEEEEEEEECCEEEEECCCceeeccccCcCCCCCcEEEEccccCCCCC-eEEEEeecccccCcc--ccccEEE
Confidence            9999999999999999999999999999999999999999999999999999876 999999999999877  5569999


Q ss_pred             EEEECCEEEEEecCCccEEEEEeeceeEEEEEEeCcEEEEEEEEecCCCceEeCCCCCCCccccccccccEEEEEEEEee
Q 015678          258 GIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWER  337 (403)
Q Consensus       258 gl~~~Gk~yrFaty~ga~~~~v~~~g~w~i~~~n~~~~LeI~~~~~~~g~~LrAP~~g~~M~~~c~ES~~g~v~v~L~e~  337 (403)
                      +||++|++|||+|||+.+.++|++|++|+|+++|++|+|+|+++++.+++.|+||+.+ +|++.|+||+.|+++|+|+++
T Consensus       236 gi~~~Gk~YrF~p~n~~v~~~V~~~g~w~i~~~n~~~~lei~~~~~~~g~~L~AP~~~-~m~~~~rEsl~g~v~v~L~~~  314 (336)
T PF14249_consen  236 GIHYDGKFYRFAPYNSKVSWQVDPWGRWRIRARNRKYELEIEATTDSPGTPLRAPTEG-GMQPRCRESLQGRVRVELWEK  314 (336)
T ss_pred             EEEECCEEEEEEcccceEEEEEeeCceEEEEEECCCEEEEEEEEECCCCcEEeCcCCC-CCchhhhccCcEEEEEEEEEC
Confidence            9999999999999999999999999999999999999999999998678999999999 999999999999999999995


Q ss_pred             ecCCCCceEEEEEeeceeEEeeeC
Q 015678          338 RYDGTKGKMILDVTSDMAALEVGG  361 (403)
Q Consensus       338 ~~~g~~gklI~d~~s~~AglEiGG  361 (403)
                      +  ++++++|++++|++||||+||
T Consensus       315 ~--~~~g~lI~~~~s~~AGLEvGG  336 (336)
T PF14249_consen  315 K--GKKGKLIFDGTSNLAGLEVGG  336 (336)
T ss_pred             c--CCCCcEEEEeecCcEEEeecC
Confidence            4  556899999999999999997

>PF07143 CrtC: Hydroxyneurosporene synthase (CrtC); InterPro: IPR010791 This family consists of several purple photosynthetic bacterial hydroxyneurosporene synthase (CrtC) proteins

Probab=96.47  E-value=0.015  Score=57.64  Aligned_cols=57  Identities=18%  Similarity=0.412  Sum_probs=42.6

Q ss_pred             EeecCcceEEEEEECCEEEEecCCceeccCCCCCCC--C--CCcEEEEeccCCCCCCceEEEEc
Q 015678          180 ICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAF--P--RKWFWVQCNVFEGATGEVALTAG  239 (403)
Q Consensus       180 V~m~h~~asG~I~~NGk~~dF~~g~GY~EKNWG~SF--P--~~w~W~Qcn~F~~~~~~~sLt~A  239 (403)
                      -++.+..++|+|+++|+.+.++ |.||.++|||...  +  ..|-|.+.+ +++.. ++++...
T Consensus       144 ws~P~~~v~Gtl~i~g~~~~V~-G~aw~Dh~WG~~~l~~~~~gW~W~~l~-l~dg~-~l~~y~~  204 (312)
T PF07143_consen  144 WSAPRLRVSGTLTIDGKTIQVT-GTAWFDHQWGSFPLAPGQSGWDWFRLQ-LDDGR-ELMLYQL  204 (312)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEE-EEEEEEEEEESS-S-TTEEEEEEEEEE-ETTS--EEEEEEE
T ss_pred             EccccEEEEEEEEECCEEEEEe-eeEEEEEcccCccCccCCCccEEEEEE-CCCCC-EEEEEEE
Confidence            3377778899999999999998 8999999999854  2  349999997 44432 2554433

The enzyme catalyses the conversion of various acyclic carotenes including 1-hydroxy derivatives. This broad substrate specificity reflects the participation of CrtC in 1'-HO-spheroidene and in spirilloxanthin biosynthesis [].; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0016117 carotenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2ICH_B.

>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function

Probab=94.58  E-value=0.4  Score=48.57  Aligned_cols=110  Identities=15%  Similarity=0.350  Sum_probs=78.2

Q ss_pred             CcceEEEEEECCEEEEecCCceeccCCCCCC---CCCCcEEEEeccCCCCCCceEEEEcccccccCcccccccEEEEEEE
Q 015678          184 GGLSTGWIEWDGERFEFQDAPSYSEKNWGGA---FPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIH  260 (403)
Q Consensus       184 h~~asG~I~~NGk~~dF~~g~GY~EKNWG~S---FP~~w~W~Qcn~F~~~~~~~sLt~AGG~~~Ip~l~~~~~~~ligl~  260 (403)
                      .-.++|+|.++|++|+|+...++.=-|||+.   +-..|-|.-++...+.-..+.|-++.|.-. +. ...|    -+|.
T Consensus       170 ~~pv~G~v~~g~~~~~~~~~~~~a~lD~~rG~~~~~t~W~Was~sg~~~dG~~iG~NL~~g~~d-~t-~~tE----N~l~  243 (333)
T PF10974_consen  170 GLPVSGSVRLGGKEYSFDPENAFAVLDWGRGYWPRETFWNWASASGRLDDGRRIGFNLGAGFND-GT-GATE----NALW  243 (333)
T ss_pred             CcceEEEEEECCEEEecCCCCcEEEEEcCCCccCCcCeEEEEEEEEECCCCCEEEEEeeccccc-CC-CCcc----eEEE
Confidence            4456999999999999997666777788875   456899999988875221378888877544 21 1233    5678


Q ss_pred             ECCEEEEEecCCccEEEEEee---ceeEEEEEEeCcEEEEEEEEec
Q 015678          261 YDGILYEFVPWNGVVSWEISQ---WGYWYFAAENQTHMVELKATTK  303 (403)
Q Consensus       261 ~~Gk~yrFaty~ga~~~~v~~---~g~w~i~~~n~~~~LeI~~~~~  303 (403)
                      ++|+.+.+    ..+.++++.   ...|+|+-.++...|+.+-..+
T Consensus       244 ~dG~~~kL----~~V~f~~~~~~~~~pW~i~s~dg~vdL~FtP~~~  285 (333)
T PF10974_consen  244 VDGKLHKL----PPVRFEYDREDPMKPWRITSDDGRVDLTFTPIFD  285 (333)
T ss_pred             ECCEEEEC----CcEEEEecCcCCCCCeEEEcCCCeEEEEEEEeee
Confidence            99999988    456676653   2469999887777666664443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
2ich_A	335	Putative ATTH; structural genomics, joint center f	94.21

>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1

Probab=94.21  E-value=0.13  Score=51.07  Aligned_cols=85  Identities=13%  Similarity=0.356  Sum_probs=55.6

Q ss_pred             eeeEeeee---eeeecCCCCCCCCcccccccCCCCCc-ceEEeecCcceEEEEEECCEEEEecCCceeccCCCCCCCCC-
Q 015678          143 RWEYSTRP---VYGWGNVGSKQNSTAGWLAAFPVFEP-HWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPR-  217 (403)
Q Consensus       143 ~W~~~i~p---~~gwG~~~~~~~~~mGwfs~LP~mEc-hw~V~m~h~~asG~I~~NGk~~dF~~g~GY~EKNWG~SFP~-  217 (403)
                      .-+++++|   .+--|+.+..+++..|        ++ -+..+..+-.++|+|+++|+.+.++ |.+..++.||+++.. 
T Consensus       132 ~~dL~l~~~~P~vl~G~~G~s~k~~~~--------~~aSyYyS~P~l~v~Gtl~~~G~~~~V~-G~aW~DrEWss~~l~~  202 (335)
T 2ich_A          132 TLTFILTPSQPLMLQGENGFSRKGPGA--------PQASYYYSEPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDP  202 (335)
T ss_dssp             EEEEEEECCSCCEECTBTTEEECSSST--------TCEEEEEEEEEEEEEEEEEESSCEEEEE-EEEEEEEEEESSCSCT
T ss_pred             EEEEEEecCCCceEeCCCceECcCCCC--------CceeEEEecccEEEEEEEEECCEEEEEE-ecEEEcccCcCccCCC
Confidence            34555543   4445665554444433        21 1223333445799999999999996 789999999999866 


Q ss_pred             ---CcEEEEeccCCCCCCceEEEE
Q 015678          218 ---KWFWVQCNVFEGATGEVALTA  238 (403)
Q Consensus       218 ---~w~W~Qcn~F~~~~~~~sLt~  238 (403)
                         .|=|..-+ +++... +|+..
T Consensus       203 ~q~GWDWf~l~-Lddg~~-Lm~~~  224 (335)
T 2ich_A          203 NAAGWDWISAN-LDDGSA-LMAFQ  224 (335)
T ss_dssp             TEEEEEEEEEE-ETTSCE-EEEEE
T ss_pred             CCCceEEEEEE-cCCCCc-EEEEE
Confidence               78898776 555443 66654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d2icha1	328	AttH-related protein NE1406 {Nitrosomonas europaea	93.35

>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406 {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: AttH-like
superfamily: AttH-like
family: AttH-like
domain: AttH-related protein NE1406
species: Nitrosomonas europaea [TaxId: 915]

Probab=93.35  E-value=0.092  Score=49.43  Aligned_cols=60  Identities=13%  Similarity=0.397  Sum_probs=48.1

Q ss_pred             ceEEeecCcceEEEEEECCEEEEecCCceeccCCCCCCCCCC----cEEEEeccCCCCCCceEEEEc
Q 015678          177 HWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRK----WFWVQCNVFEGATGEVALTAG  239 (403)
Q Consensus       177 hw~V~m~h~~asG~I~~NGk~~dF~~g~GY~EKNWG~SFP~~----w~W~Qcn~F~~~~~~~sLt~A  239 (403)
                      .+..+..+-.++|+|+++|+.+.++ |.+..++.||+++-..    |-|.+-+ |++... +|+..-
T Consensus       160 syyys~p~l~~~Gtl~~~g~~~~V~-G~~W~DheWgs~~l~~~~~gWdWfsl~-Lddg~~-Lm~~~l  223 (328)
T d2icha1         160 SYYYSEPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDPNAAGWDWISAN-LDDGSA-LMAFQI  223 (328)
T ss_dssp             EEEEEEEEEEEEEEEEESSCEEEEE-EEEEEEEEEESSCSCTTEEEEEEEEEE-ETTSCE-EEEEEE
T ss_pred             hHhhhhhheeeeeEEEEcCceEEcc-CCEEEeeeccccccccccceEEEEEEE-ECCCCe-EEEEEe
Confidence            4555555667899999999999997 7999999999987754    9999987 665553 787765