Citrus Sinensis ID: 015693

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
Protein Sequence
MAETLDSSSNMEHKHFEVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKVGGSHRRNQN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maetldsssnmehkhfevgvraeidtsapfeSVKEAVSRfggigywkpsqhklsepehdmeevdigNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAAdlnsgnenmppvLKEVQKDsheslegashnlvgslnthpssvpgLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLakdangsddtntMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALsysdglsgvlspkpegvvtLTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKVggshrrnqn
Flexible Loop (DISEMBL)
maetldsssnmehkHFEVGVraeidtsapfESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAAdlnsgnenmpPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRtttdladirasvesgnkklekerlslektrerlslnsskvssleeELNQTRLKLqlakdangsddtntMDISWELQRLSSEAEEFKKMGDAARSEVLRAIseieqtktkiktaEMRLVAARKMKEAARAAEAVAVAEIKALsysdglsgvlspKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVDAVIqvdeanvskmeilkkvggshrrnqn
Low Complexity Region (SEG)
MAETLDSSSNMEHKHFEVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNkklekerlslektrerlslNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLvaarkmkeaaraaeavavaeikaLSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKVGGSHRRNQN
Disordered region (IsUnstruct)
********************************VKEAVSRFGGIGYWK**************************LLEKDLILKERETLEVLKELEATKMIIEELKLK******************************************************************GLILMELK*****************************************************************************************************************************V**********AAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQ******KKRVVDAVIQVDEA********************
Disordered Region (DISOPRED)
************************DTSAPFESVKEAVSRFGGIGY*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********MEHKHFEVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQ************VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKT******************NQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAAR**********AVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKK**********
Disordered Region (DISPRO)
****************EVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLS*PEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSY************EGVVTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKVGGSHR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAETLDSSSNMEHKHFEVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDxxxxxxxxxxxxxxxxxxxxxTLEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNGSDDTNTMDISWExxxxxxxxxxxxxxxxxxxxxVLRAISExxxxxxxxxxxxxxxxxxxxxxxxxxxxEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKVGGSHRRNQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	402	2.2.26 [Sep-21-2011]
F4ISY0	522	WEB family protein At2g38	yes	no	0.805	0.620	0.428	2e-56
Q9SCT6	407	WEB family protein At3g51	no	no	0.569	0.562	0.421	2e-39
Q5XVC7	518	WEB family protein At2g40	no	no	0.604	0.469	0.413	2e-39
Q9LYL6	446	WEB family protein At3g56	no	no	0.706	0.636	0.328	5e-23
O48724	807	Protein WEAK CHLOROPLAST	no	no	0.631	0.314	0.313	9e-20
Q9SZB6	779	Protein WEAK CHLOROPLAST	no	no	0.442	0.228	0.342	4e-15
Q9FMN1	751	Protein WEAK CHLOROPLAST	no	no	0.492	0.263	0.323	1e-11
Q9C638	752	Protein WEAK CHLOROPLAST	no	no	0.485	0.259	0.306	6e-10

>sp|F4ISY0|Y2837_ARATH WEB family protein At2g38370 OS=Arabidopsis thaliana GN=At2g38370 PE=2 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 168/392 (42%), Positives = 238/392 (60%), Gaps = 68/392 (17%)

Query: 4   TLDSSSNMEHKHFEVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEP-EHDMEE 62
           T++  S++ +   E   + EIDTSAPFESV+EA +RFGG G+W+PS +KL +  + +++E
Sbjct: 9   TVNPDSDLSNGRAE---KPEIDTSAPFESVREAATRFGGFGFWRPSLNKLPDASQENIQE 65

Query: 63  VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKL 122
            DI  ++ QA  L+++LI+KERETLEVLKELEATK  +    LKLQ+     N   E   
Sbjct: 66  PDIMGLKAQAFELQRELIVKERETLEVLKELEATKATV----LKLQQR----NEAYEEDT 117

Query: 123 VNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQA 182
           + E V                    DSH                 P+   G++L +L QA
Sbjct: 118 LREEV--------------------DSH---------------IKPA---GVVLKDLSQA 139

Query: 183 KLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKL 242
           K+NL +    +A IR SVE    KL +ER +LEKTRERL   S KV SLEEE     +++
Sbjct: 140 KMNLCK----IASIRESVEQLKNKLNEERAALEKTRERLMEKSLKVFSLEEE----EVRV 191

Query: 243 QLAKDAN-GSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTA 301
           + AK+   G  D   ++   E+QRLS +A+E KK G+ A  EV++A++E E T+ KI+TA
Sbjct: 192 RFAKEGQTGEKDLGMLN---EVQRLSRQAQEVKKTGENAELEVVKAMAETESTRDKIRTA 248

Query: 302 EMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKA 361
           ++RLVAARKMKEAAR AEAVA+      +  + ++G ++      VT++ EEYS L   A
Sbjct: 249 KIRLVAARKMKEAAREAEAVAI------AEIEAVTGSMNVGKAEAVTISAEEYSVLARSA 302

Query: 362 QDAEELSKKRVVDAVIQVDEANVSKMEILKKV 393
           +DAEE ++KRV DA+ +V+EANVSK ++LKKV
Sbjct: 303 RDAEEEARKRVEDAMSRVEEANVSKKDVLKKV 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCT6|Y3172_ARATH WEB family protein At3g51720 OS=Arabidopsis thaliana GN=At3g51720 PE=2 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 139/330 (42%), Positives = 179/330 (54%), Gaps = 101/330 (30%)

Query: 1   MAETLDSSSNMEHKHFEVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDM 60
           MAETL+ S           +  EIDTSAPFESV+EA +RFGG G+WKPS   +SE   + 
Sbjct: 1   MAETLEPS-----------LVGEIDTSAPFESVREAATRFGGFGFWKPSSLNISEASQN- 48

Query: 61  EEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLES 120
              ++G V  +AS LEK+LI KE ETL+VLK LE+TK I+EELK K+Q +  + N     
Sbjct: 49  ---EVGMVL-KASELEKELIEKEGETLKVLKSLESTKAIVEELKSKIQNKEDKENC---- 100

Query: 121 KLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELK 180
                    D+N                                          +  EL 
Sbjct: 101 ---------DMN------------------------------------------VFKELN 109

Query: 181 QAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRL 240
           QAK+NL +TT DLA IR SV   NK+LE+ER +LEKTRERL                   
Sbjct: 110 QAKMNLCKTTKDLAAIRVSVGLLNKRLEEERAALEKTRERL------------------- 150

Query: 241 KLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKT 300
                      +  N  ++S E+QRLS EA+EF + G+  R  V +A++EIEQT+ KI+ 
Sbjct: 151 -----------NSENAAEMSMEIQRLSYEAKEFSRTGENVRYAVNKAVAEIEQTRNKIEA 199

Query: 301 AEMRLVAARKMKEAARAAEAVAVAEIKALS 330
           AEMRL+AARKMKEAARAAEAVA+AEIKA++
Sbjct: 200 AEMRLIAARKMKEAARAAEAVAIAEIKAVT 229

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XVC7|Y2048_ARATH WEB family protein At2g40480 OS=Arabidopsis thaliana GN=At2g40480 PE=2 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/319 (41%), Positives = 177/319 (55%), Gaps = 76/319 (23%)

Query: 18  VGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEK 77
           VG+RAEIDTS PF SV+EAV+RFGG GYW P   KL +  +   E DI  +EE A+ LEK
Sbjct: 53  VGLRAEIDTSPPFGSVQEAVTRFGGRGYWVP--FKLDDTFNG--EFDIKRMEEHAAELEK 108

Query: 78  DLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNEN 137
           DLI+KE ETL+VL+ L +TK I+E+LK +LQ+EA   +  L S +   N           
Sbjct: 109 DLIVKELETLDVLEALGSTKRIVEDLKRQLQQEALRCSDQLSSDIKEMN----------- 157

Query: 138 MPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIR 197
                     D H       HN        P S P LILMELKQAK+NL +T  +L  I+
Sbjct: 158 ----------DEH-----CHHN--------PMSSPDLILMELKQAKMNLGKTMDNLVVIQ 194

Query: 198 ASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTM 257
           +SVES NKK+++E+  LEKTR +L+       SL EEL++ ++K Q+             
Sbjct: 195 SSVESLNKKMKEEKDFLEKTRAKLTYGFGGPVSLAEELSRIKVKPQVQ------------ 242

Query: 258 DISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQT------KTKIKTAEMRLVAARKM 311
                               D    E ++ ++E ++T      K  ++TAEMRLVAARKM
Sbjct: 243 --------------------DEPLREQVKMVAEADETGLNLQNKNSLRTAEMRLVAARKM 282

Query: 312 KEAARAAEAVAVAEIKALS 330
           +EAA+AAEA+A+AEI  LS
Sbjct: 283 EEAAKAAEALAIAEITMLS 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYL6|Y3270_ARATH WEB family protein At3g56270 OS=Arabidopsis thaliana GN=At3g56270 PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 178/374 (47%), Gaps = 90/374 (24%)

Query: 20  VRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEKDL 79
           +RAEID S            +GG G+W P    L +    + E DI  +EEQ   LEKDL
Sbjct: 41  LRAEIDISPQL---------YGGRGFWVP--FNLEDNYDCVGEFDIKRMEEQTVELEKDL 89

Query: 80  ILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNENMP 139
           I+KE ETL++L+ L +TK I E+LK +LQ++A     T +                    
Sbjct: 90  IMKELETLDLLEALGSTKRIFEDLKWQLQQQALRCKETPQ-------------------- 129

Query: 140 PVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRAS 199
                ++  S E ++   H        +P   P L+ ME+KQA +NL +T  DLA I + 
Sbjct: 130 ----HLRSHSKEMVDEHCHR-------NPLKSPDLMTMEMKQAGMNLCKTMDDLALIHSY 178

Query: 200 VESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDI 259
            ES N K ++E+  L             V+SL EELN  + K     D     +T  + +
Sbjct: 179 AESLNMKTKEEKDVL------------GVASLAEELNSLKFK-PAGPDQVERFNTENLPV 225

Query: 260 SWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAE 319
           + + +++    E +    D A  +         Q+KT  +TA+MRLVAARKM+EAARAAE
Sbjct: 226 NPQCEQIKMVVETY----DTAFHK---------QSKTCPRTADMRLVAARKMEEAARAAE 272

Query: 320 AVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQV 379
           A+A+AE+  LS       +  PK     T  +     LT KAQ  +ELS           
Sbjct: 273 ALALAEMTILSSRRNQDALCFPK-----TPCF----PLTLKAQMNKELS----------- 312

Query: 380 DEANVSKMEILKKV 393
              NVS++EIL+K+
Sbjct: 313 --TNVSRIEILRKL 324

Arabidopsis thaliana (taxid: 3702)

>sp|O48724|WEB1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 151/287 (52%), Gaps = 33/287 (11%)

Query: 112 SEVNATLESKLVNENVAADLNS--GNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPS 169
           +E+ A +ESKL  E   +  N+    ENM          SH  L    H  V S      
Sbjct: 425 AELVAYMESKLKQEACDSTTNTDPSTENM----------SHPDL----HAAVASAKK--- 467

Query: 170 SVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVS 229
                   EL++  +N+ +   +++ ++ +  S   +LEKE+ +L   ++R  + S  V+
Sbjct: 468 --------ELEEVNVNIEKAAAEVSCLKLASSSLQLELEKEKSTLASIKQREGMASIAVA 519

Query: 230 SLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAIS 289
           S+E E+++TR ++   +          +++  +LQ+ + EA+E K + + AR E+ +A  
Sbjct: 520 SIEAEIDRTRSEIASVQSKEKDAREKMVELPKQLQQAAEEADEAKSLAEVAREELRKAKE 579

Query: 290 EIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGL---SGVLSPKPEGV 346
           E EQ K    T E RL AA+K  EAA+A+E +A+A IKAL  S+     +   SP+    
Sbjct: 580 EAEQAKAGASTMESRLFAAQKEIEAAKASERLALAAIKALEESESTLKANDTDSPRS--- 636

Query: 347 VTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKV 393
           VTL+ EEY  L+ +A +AEEL+  RV  AV +++EA  ++M  L+K+
Sbjct: 637 VTLSLEEYYELSKRAHEAEELANARVAAAVSRIEEAKETEMRSLEKL 683

Required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photorelocation movement via cp-actin filaments regulation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZB6|WEL1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana GN=WEL1 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 105/184 (57%), Gaps = 6/184 (3%)

Query: 178 ELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQ 237
           EL++   N+ + T+++  ++ +  S   +++KE+ +L+  ++R  + S  V+SLE E++ 
Sbjct: 460 ELEEVNANVEKATSEVNCLKVASSSLRLEIDKEKSALDSLKQREGMASVTVASLEAEIDI 519

Query: 238 TRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTK 297
           TR ++ L K          +++  +LQ+ S EA+E K   + AR E+ ++  E EQ K  
Sbjct: 520 TRCEIALVKSKEKETREEMVELPKQLQQASQEADEAKSFAELAREELRKSQEEAEQAKAG 579

Query: 298 IKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLS---GVLSPKPEGVVTLTYEEY 354
             T E RL AA+K  EA +A+E +A+A IKAL  S+  S    V SP+    VTLT EEY
Sbjct: 580 ASTMESRLFAAQKEIEAIKASERLALAAIKALQESESSSKENAVDSPR---TVTLTIEEY 636

Query: 355 SSLT 358
             L+
Sbjct: 637 YELS 640

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMN1|WEL3_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 3 OS=Arabidopsis thaliana GN=WEL3 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 113/210 (53%), Gaps = 12/210 (5%)

Query: 195 DIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAK--DANGSD 252
           DI A+VES  ++LE+ + ++EK    +        SL+ EL + R  L+  K  ++ G  
Sbjct: 413 DIHAAVESARRELEEVKANIEKAASEVKKLKIIAGSLQSELGRERQDLEETKQKESTGLA 472

Query: 253 DTNTMDISWEL-------QRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRL 305
            TN  D   EL       ++ + EAE+ K +  A+R E+  A    EQ K  + T E RL
Sbjct: 473 RTNDKDAGEELVETAKKLEQATKEAEDAKALATASRDELRMAKELSEQAKRGMSTIESRL 532

Query: 306 VAARKMKEAARAAEAVAVAEIKALSYSDGLSGV--LSPKPEGVVTLTYEEYSSLTCKAQD 363
           V A+K  EAARA+E +A+A IKAL  ++       ++  P  ++ ++ EEY  L+ +A +
Sbjct: 533 VEAKKEMEAARASEKLALAAIKALQETESSQRFEEINNSPRSII-ISVEEYYELSKQALE 591

Query: 364 AEELSKKRVVDAVIQVDEANVSKMEILKKV 393
           +EE +  R+ + V Q++ A   +  IL+K+
Sbjct: 592 SEEEANTRLSEIVSQIEVAKEEESRILEKL 621

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C638|WEL2_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 2 OS=Arabidopsis thaliana GN=WEL2 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 113/202 (55%), Gaps = 7/202 (3%)

Query: 194 ADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSD- 252
           +DI+A+V+S  K+LE+   ++EK    +      V SL+ EL + +  L   +  N  D 
Sbjct: 431 SDIQAAVDSARKELEEVISNIEKANSEVKTLKIIVGSLQSELAREKHDLSETRQRNREDT 490

Query: 253 -DTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKM 311
            +    +I+ +LQ  S EAEE K +  AAR E+ +A  E ++ KT +   E +L+ ++K 
Sbjct: 491 REEKCTEIAKKLQEASREAEEAKSLAIAAREELRKAKEESDEAKTGLSAVERQLMESKKE 550

Query: 312 KEAARAAEAVAVAEIKALS---YSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELS 368
            EA+RA+E +A+A IKAL    Y++ +  + S     ++++  EEY  L+ +A + EE +
Sbjct: 551 MEASRASEKLALAAIKALQETEYANKIEDISSSPKSIIISV--EEYYELSKQAHEVEEAA 608

Query: 369 KKRVVDAVIQVDEANVSKMEIL 390
            +++ + V +++ A   +  IL
Sbjct: 609 NRKLAEIVSKIEVAKEEESRIL 630

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
225439633	594	PREDICTED: protein WEAK CHLOROPLAST MOVE	0.905	0.612	0.696	1e-136
255586107	555	conserved hypothetical protein [Ricinus	0.905	0.655	0.708	1e-125
356495117	559	PREDICTED: uncharacterized protein LOC10	0.915	0.658	0.616	1e-108
356506471	547	PREDICTED: uncharacterized protein LOC10	0.898	0.659	0.601	1e-102
297735568	716	unnamed protein product [Vitis vinifera]	0.701	0.393	0.581	1e-100
356566770	561	PREDICTED: uncharacterized protein LOC10	0.922	0.661	0.571	1e-98
357506563	570	hypothetical protein MTR_7g072550 [Medic	0.885	0.624	0.561	6e-97
449464428	559	PREDICTED: WEB family protein At2g38370-	0.880	0.633	0.555	4e-86
224139326	426	predicted protein [Populus trichocarpa]	0.701	0.661	0.543	2e-79
225448625	534	PREDICTED: protein WEAK CHLOROPLAST MOVE	0.833	0.627	0.493	2e-69

>gi|225439633|ref|XP_002266471.1| PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Vitis vinifera]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/379 (69%), Positives = 314/379 (82%), Gaps = 15/379 (3%)

Query: 17  EVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLE 76
           E G R EIDTSAPFESVKEA SRFGGIG+WKPS  KLSE E  +EEVDI  VEE A+ LE
Sbjct: 42  EGGGRGEIDTSAPFESVKEAASRFGGIGFWKPSHCKLSEAERGIEEVDIAQVEEHAAQLE 101

Query: 77  KDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNE 136
           KDLILKERETL+VLKELEATKMI+EELKLKLQKE+SEV A LE+           NS + 
Sbjct: 102 KDLILKERETLDVLKELEATKMIVEELKLKLQKESSEVTAILET-----------NSDDR 150

Query: 137 NMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADI 196
            + P+++E +   HE+ E    +L G L   PSS PGLILMELKQAKLNL+RTT DLADI
Sbjct: 151 IVTPIVQEAEMKRHENPEADQQHLAGGLMLCPSSAPGLILMELKQAKLNLTRTTNDLADI 210

Query: 197 RASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDA--NGSDDT 254
           RASVES NKK+EKER+SLEKTRERL+LNSSK+SSLE ELNQTRLK+QLAKDA   GS D 
Sbjct: 211 RASVESFNKKIEKERISLEKTRERLTLNSSKISSLEAELNQTRLKVQLAKDAEIKGSFD- 269

Query: 255 NTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEA 314
           N MDI+ ELQ+L+SEAE+FKKMG+AA+SEVL+AISEIEQTK +IKTAE+RLVAA+KMKEA
Sbjct: 270 NPMDIARELQKLTSEAEDFKKMGEAAKSEVLKAISEIEQTKARIKTAEIRLVAAKKMKEA 329

Query: 315 ARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVD 374
           ARAAE +A+AEIKALS S+   GVL  KP+G VTL++EEYS+LTC+A++AEELSK +V++
Sbjct: 330 ARAAEVIALAEIKALSNSESSHGVLLQKPDG-VTLSFEEYSALTCRAREAEELSKGKVIE 388

Query: 375 AVIQVDEANVSKMEILKKV 393
           A++QVDEAN+SK+EIL++V
Sbjct: 389 AMLQVDEANISKVEILRRV 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586107|ref|XP_002533717.1| conserved hypothetical protein [Ricinus communis] gi|223526372|gb|EEF28662.1| conserved hypothetical protein [Ricinus communis]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 268/378 (70%), Positives = 316/378 (83%), Gaps = 14/378 (3%)

Query: 18  VGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEK 77
            G+RAEIDTSAPFESVKEAVSRFGGIGYWKPSQ+K  + E D EE+DI  +EEQA+LLEK
Sbjct: 10  FGLRAEIDTSAPFESVKEAVSRFGGIGYWKPSQNKPFQHEDDTEEMDISKLEEQAALLEK 69

Query: 78  DLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNEN 137
           DLI+KERETL+VLKELE+TK ++EELKLKLQK+ASEVN TLES           N+ + N
Sbjct: 70  DLIVKERETLDVLKELESTKTVVEELKLKLQKQASEVNVTLES-----------NADDRN 118

Query: 138 MPPVLKEVQKD-SHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADI 196
           + P  KE +++ +HE+L   +  ++G L+  PSS PGLIL+ELKQAKLNLSRTT DLADI
Sbjct: 119 VTPASKEEKENHNHENLGDHNPTVMGGLSACPSSSPGLILVELKQAKLNLSRTTNDLADI 178

Query: 197 RASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDA-NGSDDTN 255
           R SVE  NKKLEKERLSLE+TRERL+LNSSK+SSLEEELNQT+LKLQ AKDA N     N
Sbjct: 179 RGSVEFLNKKLEKERLSLERTRERLTLNSSKISSLEEELNQTKLKLQGAKDASNRGHCDN 238

Query: 256 TMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAA 315
           ++DI+ ELQRLSSE E FKKMG+AA+SEVL+AISEIEQTK+KIKTAE+RLVAARKMK+AA
Sbjct: 239 SLDITSELQRLSSETENFKKMGEAAQSEVLKAISEIEQTKSKIKTAEIRLVAARKMKQAA 298

Query: 316 RAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVDA 375
           +AAEAVA+AEIKA+S  +  SG  S K EG VTLT+EEYSSLT KAQ+AEELSK +V+DA
Sbjct: 299 KAAEAVALAEIKAMSSHENSSGDSSKKAEG-VTLTFEEYSSLTSKAQEAEELSKTKVIDA 357

Query: 376 VIQVDEANVSKMEILKKV 393
           ++QVDEANVSKMEILKKV
Sbjct: 358 MLQVDEANVSKMEILKKV 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495117|ref|XP_003516427.1| PREDICTED: uncharacterized protein LOC100783770 [Glycine max]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 249/404 (61%), Positives = 302/404 (74%), Gaps = 36/404 (8%)

Query: 1   MAETLDSSSNMEHKHFEVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLS------ 54
           M E  D+++N      E G+RAEIDTSAPFESV+EAV+RFGG+GYWKP  + LS      
Sbjct: 1   MEEVPDTAANRS----EPGLRAEIDTSAPFESVREAVTRFGGVGYWKPILNGLSNKHFAA 56

Query: 55  -EPEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASE 113
            EP H  EE+D   +EEQA++LEK+LILKERETL+VLKELE+TK ++E LK KLQKE SE
Sbjct: 57  TEPHH-TEELDPEKLEEQATVLEKELILKERETLDVLKELESTKRLVENLKSKLQKEESE 115

Query: 114 VNATLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVG----SLNTHPS 169
            N   ++  V EN+ +               V++D  E  E    N+V         + S
Sbjct: 116 ANLNFQTS-VCENILS---------------VKEDEKEDKENGMSNVVQDSKEGCTPYTS 159

Query: 170 SVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVS 229
           S PGLILMELKQAK NL+RTT+D+AD+RASVES NKKLEKERLSLEKTR+RL+ NSSK+ 
Sbjct: 160 SSPGLILMELKQAKFNLNRTTSDIADVRASVESLNKKLEKERLSLEKTRKRLTQNSSKIC 219

Query: 230 SLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAIS 289
           SLEEELNQT+LKL +AKDA   D  N  DI+ ELQRLSSEAE FKKMG+AA+SEV++AIS
Sbjct: 220 SLEEELNQTKLKLLVAKDA---DLDNPSDITRELQRLSSEAEHFKKMGEAAKSEVMKAIS 276

Query: 290 EIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTL 349
           EIEQTK  IKTAE+RLVAARKMKEAARAAEA A+AEIKALS+ +   G    K +G VTL
Sbjct: 277 EIEQTKAMIKTAEIRLVAARKMKEAARAAEAAALAEIKALSHHENSPGDCVEKHDG-VTL 335

Query: 350 TYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKV 393
           ++EEY++LTCK ++AEE SKKRVVDA++ VDEANVSKM+ILKKV
Sbjct: 336 SFEEYTALTCKVREAEEQSKKRVVDAMLLVDEANVSKMDILKKV 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506471|ref|XP_003522005.1| PREDICTED: uncharacterized protein LOC100787199 [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/399 (60%), Positives = 297/399 (74%), Gaps = 38/399 (9%)

Query: 1   MAETLDSSSNMEHKHFEVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDM 60
           M E  D+++N      + G RAEIDTSAPFESV+EAV+RFGG+GYWKP  + L       
Sbjct: 1   MEEVPDTAANRS----DPGFRAEIDTSAPFESVREAVTRFGGVGYWKPILNGL------- 49

Query: 61  EEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLES 120
           +E+D   +EEQA++LEKDLILKERETL+VLKELE+TK ++E LK K+QKE SE N   ++
Sbjct: 50  KELDPEKLEEQAAVLEKDLILKERETLDVLKELESTKRLVENLKSKVQKEESEANLNFQT 109

Query: 121 KLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLV-----GSLNTHPSSVPGLI 175
             V EN+++               V++D  E  E    N+V     G +  +PSS PGLI
Sbjct: 110 S-VCENISS---------------VKEDEREDKENRVSNVVQNSKEGCV-PYPSSSPGLI 152

Query: 176 LMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEEL 235
           LMELKQAK NL+RTT+D+AD+RASVES NKKLEKERLSLEKTRERL+ NSSK+ SLEEEL
Sbjct: 153 LMELKQAKFNLNRTTSDIADVRASVESLNKKLEKERLSLEKTRERLTQNSSKICSLEEEL 212

Query: 236 NQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTK 295
            QT+LKL +AKDA GSD  N  DI+ ELQRLS EAE FK MG+AA+SEV++ +SEIEQTK
Sbjct: 213 YQTKLKLLVAKDA-GSD--NHSDITRELQRLSFEAEHFKNMGEAAKSEVMKEMSEIEQTK 269

Query: 296 TKIKTAEMRLVAARKMKEAARAAEAVAVAEIKAL-SYSDGLSGVLSPKPEGVVTLTYEEY 354
             IKTAE RL+AA+KMKEAARAAEA A+AEIKAL S+ +   G    K +G VTL++EEY
Sbjct: 270 AMIKTAETRLIAAQKMKEAARAAEAAALAEIKALSSHHENSPGDCVEKHDG-VTLSFEEY 328

Query: 355 SSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKV 393
           ++LTCK ++A+E SKKRVVDA+  VDEANVSKMEIL+KV
Sbjct: 329 TALTCKVREAKEQSKKRVVDAMHLVDEANVSKMEILRKV 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735568|emb|CBI18062.3| unnamed protein product [Vitis vinifera]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/373 (58%), Positives = 251/373 (67%), Gaps = 91/373 (24%)

Query: 17  EVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLE 76
           E G R EIDTSAPFESVKEA SRFGGIG+WKPS  KLSE E  +EEVDI  VEE A+ LE
Sbjct: 42  EGGGRGEIDTSAPFESVKEAASRFGGIGFWKPSHCKLSEAERGIEEVDIAQVEEHAAQLE 101

Query: 77  KDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNE 136
           KDLILKERETL+VLKELEATKMI+EELKLKLQKE+SEV A LE+           NS + 
Sbjct: 102 KDLILKERETLDVLKELEATKMIVEELKLKLQKESSEVTAILET-----------NSDDR 150

Query: 137 NMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADI 196
                                 +L G L   PSS PGLILMELKQAKLNL+RTT DLADI
Sbjct: 151 ---------------------IHLAGGLMLCPSSAPGLILMELKQAKLNLTRTTNDLADI 189

Query: 197 RASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNT 256
           RASVES NKK+EKER+SLEKTRERL+LNSSK+SSLE ELNQTRLKLQ             
Sbjct: 190 RASVESFNKKIEKERISLEKTRERLTLNSSKISSLEAELNQTRLKLQ------------- 236

Query: 257 MDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAAR 316
                   +L+SEAE+FKKMG+AA+SEVL+AISEIEQTK +IKTAE+RLVAA+KMKEAAR
Sbjct: 237 --------KLTSEAEDFKKMGEAAKSEVLKAISEIEQTKARIKTAEIRLVAAKKMKEAAR 288

Query: 317 AAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVDAV 376
           AAE +A+AEIKA                                      LS ++V++A+
Sbjct: 289 AAEVIALAEIKA--------------------------------------LSNRKVIEAM 310

Query: 377 IQVDEANVSKMEI 389
           +QVDEAN+SK+ +
Sbjct: 311 LQVDEANISKLAV 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566770|ref|XP_003551601.1| PREDICTED: uncharacterized protein LOC100785049 [Glycine max]

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 231/404 (57%), Positives = 292/404 (72%), Gaps = 33/404 (8%)

Query: 2   AETLDSSSN-----MEHKHFEVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHK---- 52
           A+ +++++N     +E K+ + G+R EIDTSAPFESVKEAV+ FGG GYWK   H     
Sbjct: 4   ADVVETTTNHAERGLEKKNNKSGLRTEIDTSAPFESVKEAVTMFGG-GYWKSPLHSNITC 62

Query: 53  -LSEPEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA 111
             S  EH  EEV    +EEQA +LEK+LILKERETL+VLKELE+TK ++E+LK K+QKE 
Sbjct: 63  VASGSEHHREEVSAEKLEEQAVVLEKELILKERETLDVLKELESTKRLVEDLKSKIQKEE 122

Query: 112 SEVNATLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSV 171
           SE N  L+    ++    D N   EN    L  +Q     S EG           +PSS 
Sbjct: 123 SEANLNLQMGKYDKKSVVDENVEKENQMSQLNVLQP----SREG--------FIPYPSST 170

Query: 172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSL 231
           PGLILMELKQAKLNL++TT DLAD++ SVES NKKLEKER+SLEKTR+RL+ N+ K+SSL
Sbjct: 171 PGLILMELKQAKLNLTKTTNDLADVQTSVESLNKKLEKERISLEKTRDRLAQNTLKISSL 230

Query: 232 EEELNQTRLKLQLAKDA--NGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAIS 289
           EEELNQTRL+LQ+AKDA   G+ D +  DI+ ELQ+LSSEAE FK+MG+ A+SEVLR++S
Sbjct: 231 EEELNQTRLRLQIAKDAEIKGALD-DPSDITRELQQLSSEAENFKRMGEFAKSEVLRSMS 289

Query: 290 EIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTL 349
           EIEQTKT I+TAE+RL+AARKMKEAARAAEA A+AEI ALS  D         P   VTL
Sbjct: 290 EIEQTKTMIRTAEIRLLAARKMKEAARAAEAFALAEINALSNHDS-------SPGNQVTL 342

Query: 350 TYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKV 393
           ++EEY++L  KA+DAEE SK+RV  A ++VDEAN++ M+ILK+V
Sbjct: 343 SFEEYTALMGKARDAEEQSKQRVASATLEVDEANLANMDILKRV 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506563|ref|XP_003623570.1| hypothetical protein MTR_7g072550 [Medicago truncatula] gi|355498585|gb|AES79788.1| hypothetical protein MTR_7g072550 [Medicago truncatula]

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 214/381 (56%), Positives = 270/381 (70%), Gaps = 25/381 (6%)

Query: 19  GVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKL----SEPEHDMEEVDIGNVEEQASL 74
             R EIDTSAPFESVKEAV+ FGG+GYWKP  H L    S  +H +EE+D   +EEQA  
Sbjct: 27  SFRTEIDTSAPFESVKEAVNLFGGVGYWKPF-HNLPSLTSHSKHHIEELDREKLEEQARA 85

Query: 75  LEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSG 134
           LEK+LILKERETL+VLKELE TK ++E+LK KLQKE SE    L   + ++ +  +    
Sbjct: 86  LEKELILKERETLDVLKELEKTKRLVEDLKSKLQKEESETILNLGMSVCDQRLIVEEKEV 145

Query: 135 NENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSV--PGLILMELKQAKLNLSRTTTD 192
            EN        Q    E L+           + PS V  P LILMELKQAKLNL++TT D
Sbjct: 146 KEN--------QSSPSEVLQPMKEC------SMPSRVSSPDLILMELKQAKLNLTKTTHD 191

Query: 193 LADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSD 252
           +AD+RA+VES NKKLEKER+SLEKTRER + N SK+S LEEELNQTRL+LQ+AK A   D
Sbjct: 192 IADVRATVESLNKKLEKERISLEKTRERFTQNCSKMSCLEEELNQTRLRLQVAKGAASGD 251

Query: 253 DTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMK 312
               +D++ EL RLSSEAE F+K  ++A+SEVL+A+SEIE T+  IKTAE+RLVAARKMK
Sbjct: 252 ---PLDVTTELHRLSSEAERFRKKRESAKSEVLKALSEIELTEAMIKTAEIRLVAARKMK 308

Query: 313 EAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRV 372
           +A+RAAEA  +AEI ALS  +G       K E  +TL+ EEY++LT KA++AEE SKKRV
Sbjct: 309 QASRAAEAATLAEINALSSHEGTPEECMQKHEE-ITLSVEEYTTLTRKAREAEEQSKKRV 367

Query: 373 VDAVIQVDEANVSKMEILKKV 393
            DA+++VDEAN S+M++ K+V
Sbjct: 368 ADAMLEVDEANSSQMDVFKRV 388

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464428|ref|XP_004149931.1| PREDICTED: WEB family protein At2g38370-like [Cucumis sativus] gi|449510853|ref|XP_004163785.1| PREDICTED: WEB family protein At2g38370-like [Cucumis sativus]

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 215/387 (55%), Positives = 265/387 (68%), Gaps = 33/387 (8%)

Query: 19  GVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHK----------LSEPEHDMEEVDIGN- 67
             RAE+DTSAPFESVKEAVSRFGG G+WKPS             LSEPE D +EVDI   
Sbjct: 8   AFRAEVDTSAPFESVKEAVSRFGGSGFWKPSHSHTPTHTQSYTHLSEPEDDKDEVDIDAT 67

Query: 68  -VEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNEN 126
            +E+QA  +E +LI+KERETLEVLKELEATK I+E+LKLKL+KEA EV+ T ++K  + N
Sbjct: 68  ILEKQAMNMESELIVKERETLEVLKELEATKRIVEDLKLKLRKEAFEVSVTQDTKRDDIN 127

Query: 127 VAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNL 186
             A   +  EN+ P       DS    E  S              PGLILMEL+QAKLNL
Sbjct: 128 ATAAQEAVKENLRPT------DSQGQNEQIS-----------PPAPGLILMELEQAKLNL 170

Query: 187 SRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAK 246
           +RT +++AD+RASVES NKKLEKER  LEK +ERL+ NSS +S+LE+ELNQT+LKL++ K
Sbjct: 171 TRTPSNIADLRASVESFNKKLEKERTGLEKIQERLAQNSSNISALEKELNQTKLKLRVVK 230

Query: 247 D--ANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMR 304
           D  A G  D N ++IS EL  LS EAE+FKKM +AAR EV R   EIEQ K  +KTA+++
Sbjct: 231 DAEAKGFPD-NPLEISKELHELSEEAEKFKKMREAARLEVSRMEIEIEQNKAMLKTAQVK 289

Query: 305 LVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEG-VVTLTYEEYSSLTCKAQD 363
           LVAARKMKEAARAAEAVA++EI  L+     S   S    G  VTL+ EEY +LT KA +
Sbjct: 290 LVAARKMKEAARAAEAVALSEIMILTKHGNPSSDFSLTHGGERVTLSSEEYFTLTLKACE 349

Query: 364 AEELSKKRVVDAVIQVDEANVSKMEIL 390
           A+E  +KRV+D +  VD AN SKM+IL
Sbjct: 350 AKEQCRKRVIDVMQLVDAANTSKMDIL 376

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139326|ref|XP_002323057.1| predicted protein [Populus trichocarpa] gi|222867687|gb|EEF04818.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 201/370 (54%), Positives = 233/370 (62%), Gaps = 88/370 (23%)

Query: 20  VRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEKDL 79
           ++AEIDTSAPFESVKEAVSRFGGIGYWKPSQ K   PE DME +DI  VEEQA LLEKDL
Sbjct: 2   MKAEIDTSAPFESVKEAVSRFGGIGYWKPSQQK---PE-DMENIDIAKVEEQAVLLEKDL 57

Query: 80  ILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNENMP 139
            +KERETL++LKELE TK I+EELKLKLQK+A+EVNATLE                    
Sbjct: 58  FVKERETLDILKELETTKGIVEELKLKLQKQAAEVNATLE-------------------- 97

Query: 140 PVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRAS 199
                                         S PGLIL+ELKQAKLNLSRTT DLAD R S
Sbjct: 98  ------------------------------STPGLILLELKQAKLNLSRTTNDLADTRTS 127

Query: 200 VESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDI 259
           VE  NKKLEKER+SLEKT                             D NG  D N +DI
Sbjct: 128 VELLNKKLEKERISLEKTHA---------------------------DMNGGSD-NPVDI 159

Query: 260 SWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAE 319
           S ELQRLSSEAE+FKKMGDAA+SEVLR +SEIEQTK +I+TAE+RL+AARKMKEAARA E
Sbjct: 160 SRELQRLSSEAEQFKKMGDAAKSEVLRTLSEIEQTKGRIQTAEIRLIAARKMKEAARAVE 219

Query: 320 AVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQV 379
           AVA+AEIKALS  +  S   + KPEG+  L   E ++   K       SKK + +A+ +V
Sbjct: 220 AVALAEIKALSSHENSSAKSTQKPEGMEVLKKVEEATEEIKT------SKKALEEALNRV 273

Query: 380 DEANVSKMEI 389
           + AN  K+ +
Sbjct: 274 EAANKGKLAV 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448625|ref|XP_002274327.1| PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Vitis vinifera]

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 188/381 (49%), Positives = 252/381 (66%), Gaps = 46/381 (12%)

Query: 5   LDSSSNMEHKHFEVGV--------RAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEP 56
            DSS  + H   E+ V        RAEIDTS PF SV+EAV+RFGG G+W P  HKL + 
Sbjct: 20  CDSSMKVGHGGDEIPVPETKKVECRAEIDTSPPFGSVEEAVTRFGGRGFWIP-LHKLGDA 78

Query: 57  EHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNA 116
            H +EEVDI  VE+QA+ LEKDL+ K++ETL+VLKELEATK  +E+L+LKLQ        
Sbjct: 79  YHGIEEVDINKVEQQAAELEKDLMAKQQETLDVLKELEATKRFVEDLRLKLQ-------- 130

Query: 117 TLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLIL 176
            L+    ++ ++A       + P  +KE+ K++  S   AS     +LN   +S P LIL
Sbjct: 131 ILDLHADDQKISA-------SPPAAIKEMNKENSGSSTAAS-----TLNHPGNSSPDLIL 178

Query: 177 MELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELN 236
           MELKQAKLNLS+TT DLA IR SVES N+K+++E+ SLEK +E + +NS           
Sbjct: 179 MELKQAKLNLSKTTNDLAVIRDSVESLNRKMKQEKSSLEKNQENMVINS----------- 227

Query: 237 QTRLKLQLAKDANGSDDT-NTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTK 295
             R++ Q A    G     N  +IS ELQ+L+SEAE+F KM +AA+ EVLRA+S IEQTK
Sbjct: 228 --RMRPQAALSLEGKGGFENPTNISRELQQLNSEAEQFIKMAEAAKFEVLRAMSGIEQTK 285

Query: 296 TKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALS-YSDGLSGVLSPKPEGVVTLTYEEY 354
           T +KTAEMR VAA+KM+EAARAAEAVA+AEI+ALS  S+  SGV   KPEG +TL++ +Y
Sbjct: 286 TSMKTAEMRWVAAKKMEEAARAAEAVALAEIRALSGGSEASSGVFMQKPEG-ITLSFRDY 344

Query: 355 SSLTCKAQDAEELS-KKRVVD 374
           SS+   +Q  ++++ +K+ VD
Sbjct: 345 SSIVSNSQRTDDMTPRKKAVD 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
TAIR|locus:2057191	522	AT2G38370 "AT2G38370" [Arabido	0.507	0.390	0.351	8e-49
TAIR|locus:2098247	407	AT3G51720 "AT3G51720" [Arabido	0.291	0.287	0.465	2.5e-32
TAIR|locus:2061913	518	AT2G40480 "AT2G40480" [Arabido	0.412	0.320	0.426	1.7e-20
TAIR|locus:2119206	779	AT4G33390 "AT4G33390" [Arabido	0.761	0.392	0.249	1.6e-14
TAIR|locus:2078361	446	AT3G56270 "AT3G56270" [Arabido	0.243	0.219	0.401	2.4e-14
TAIR|locus:2066301	807	WEB1 "WEAK CHLOROPLAST MOVEMEN	0.820	0.408	0.227	4.8e-14
TAIR|locus:2160046	751	AT5G42880 "AT5G42880" [Arabido	0.584	0.312	0.277	3.7e-12
TAIR|locus:2825751	752	AT1G45545 "AT1G45545" [Arabido	0.810	0.433	0.234	6.3e-12
TAIR|locus:2176625	649	AT5G55860 "AT5G55860" [Arabido	0.766	0.474	0.209	2e-07
TAIR|locus:2130729	527	AT4G17210 "AT4G17210" [Arabido	0.425	0.324	0.269	7.5e-06

TAIR|locus:2057191 AT2G38370 "AT2G38370" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 8.0e-49, Sum P(2) = 8.0e-49
 Identities = 78/222 (35%), Positives = 120/222 (54%)

Query:   173 GLILMELKQAKLNLSRTTTDLADIRASVESGNXXXXXXXXXXXXXXXXXXXNSSKVSSLE 232
             G++L +L QAK+NL +    +A IR SVE                       S KV SLE
Sbjct:   130 GVVLKDLSQAKMNLCK----IASIRESVEQLKNKLNEERAALEKTRERLMEKSLKVFSLE 185

Query:   233 EELNQTRLKLQLAKDAN-GSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEI 291
             EE     ++++ AK+   G  D   ++   E+QRLS +A+E KK G+ A  EV++A++E 
Sbjct:   186 EE----EVRVRFAKEGQTGEKDLGMLN---EVQRLSRQAQEVKKTGENAELEVVKAMAET 238

Query:   292 EQTKTKIKTAEMRLXXXXXXXXXXXXXXXXXXXXXXXLSYSDGLSGVLSPKPEGVVTLTY 351
             E T+ KI+TA++RL                       ++  + ++G ++      VT++ 
Sbjct:   239 ESTRDKIRTAKIRLVAARKMKEAAREAEAVA------IAEIEAVTGSMNVGKAEAVTISA 292

Query:   352 EEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKV 393
             EEYS L   A+DAEE ++KRV DA+ +V+EANVSK ++LKKV
Sbjct:   293 EEYSVLARSARDAEEEARKRVEDAMSRVEEANVSKKDVLKKV 334

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2098247 AT3G51720 "AT3G51720" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 2.5e-32, Sum P(2) = 2.5e-32
 Identities = 60/129 (46%), Positives = 81/129 (62%)

Query:    17 EVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLE 76
             E  +  EIDTSAPFESV+EA +RFGG G+WKPS   +SE   +    ++G V + AS LE
Sbjct:     6 EPSLVGEIDTSAPFESVREAATRFGGFGFWKPSSLNISEASQN----EVGMVLK-ASELE 60

Query:    77 KDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNE 136
             K+LI KE ETL+VLK LE+TK I+EELK K+Q +  + N  +       NV  +LN    
Sbjct:    61 KELIEKEGETLKVLKSLESTKAIVEELKSKIQNKEDKENCDM-------NVFKELNQAKM 113

Query:   137 NMPPVLKEV 145
             N+    K++
Sbjct:   114 NLCKTTKDL 122

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0042127 "regulation of cell proliferation" evidence=RCA

TAIR|locus:2061913 AT2G40480 "AT2G40480" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 75/176 (42%), Positives = 103/176 (58%)

Query:    18 VGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEK 77
             VG+RAEIDTS PF SV+EAV+RFGG GYW P   KL +  +   E DI  +EE A+ LEK
Sbjct:    53 VGLRAEIDTSPPFGSVQEAVTRFGGRGYWVP--FKLDDTFNG--EFDIKRMEEHAAELEK 108

Query:    78 DLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNEN 137
             DLI+KE ETL+VL+ L +TK I+E+LK +LQ+EA   +  L S +   N     ++   +
Sbjct:   109 DLIVKELETLDVLEALGSTKRIVEDLKRQLQQEALRCSDQLSSDIKEMNDEHCHHNPMSS 168

Query:   138 MPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDL 193
                +L E+ K +  +L     NLV       SSV  L   ++K+ K  L +T   L
Sbjct:   169 PDLILMEL-KQAKMNLGKTMDNLV----VIQSSVESLN-KKMKEEKDFLEKTRAKL 218

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2119206 AT4G33390 "AT4G33390" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 79/317 (24%), Positives = 131/317 (41%)

Query:    80 ILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGNENMP 139
             +L+++ET    KEL+  +  ++ LK  L     E+   LE       +  DL     +  
Sbjct:   367 MLRDQETHRWEKELKQAEEELQRLKQHLVS-TKELQVKLEFASA---LLLDLKKELADH- 421

Query:   140 PVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILM---ELKQAKLNLSRTTTDLADI 196
                KE  K   E+ E    N+  SL    + +   +     EL++   N+ + T+++  +
Sbjct:   422 ---KESSKVKEETSETVVTNIEISLQEKTTDIQKAVASAKKELEEVNANVEKATSEVNCL 478

Query:   197 RASVESGNXXXXXXXXXXXXXXXXXXXNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNT 256
             + +  S                      S  V+SLE E++ TR ++ L K          
Sbjct:   479 KVASSSLRLEIDKEKSALDSLKQREGMASVTVASLEAEIDITRCEIALVKSKEKETREEM 538

Query:   257 MDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLXXXXXXXXXXX 316
             +++  +LQ+ S EA+E K   + AR E+ ++  E EQ K    T E RL           
Sbjct:   539 VELPKQLQQASQEADEAKSFAELAREELRKSQEEAEQAKAGASTMESRLFAAQKEIEAIK 598

Query:   317 XXXXXXXXXXXXLSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAEELSKKRVVDAV 376
                         L  S+  S   +      VTLT EEY  L+ +A +AEE +  RV  AV
Sbjct:   599 ASERLALAAIKALQESESSSKENAVDSPRTVTLTIEEYYELSKRAHEAEEAANARVAAAV 658

Query:   377 IQVDEANVSKMEILKKV 393
              +V EA  ++   L+K+
Sbjct:   659 SEVGEAKETEKRSLEKL 675

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2078361 AT3G56270 "AT3G56270" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
 Identities = 45/112 (40%), Positives = 62/112 (55%)

Query:     8 SSNMEHKHFEVG-VRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHD-MEEVDI 65
             S N   ++   G +RAEID S            +GG G+W P      E  +D + E DI
Sbjct:    28 SENFNPENTRRGCLRAEIDISPQL---------YGGRGFWVPFN---LEDNYDCVGEFDI 75

Query:    66 GNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNAT 117
               +EEQ   LEKDLI+KE ETL++L+ L +TK I E+LK +LQ++A     T
Sbjct:    76 KRMEEQTVELEKDLIMKELETLDLLEALGSTKRIFEDLKWQLQQQALRCKET 127

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2066301 WEB1 "WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 79/347 (22%), Positives = 154/347 (44%)

Query:    52 KLSEPEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA 111
             +L   +  +E     ++E +   +   +  ++++T    KEL+  +   EEL+ +L ++ 
Sbjct:   349 ELIATKESLESAHASHLEAEEQRIGAAMA-RDQDTHRWEKELKQAE---EELQ-RLNQQI 403

Query:   112 SEVNATLESKLVNEN-VAADLNSGN-ENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPS 169
                +  L+SKL   + +  DL +     M   LK+   DS  + + ++ N+     +HP 
Sbjct:   404 HS-SKDLKSKLDTASALLLDLKAELVAYMESKLKQEACDSTTNTDPSTENM-----SHPD 457

Query:   170 --SVPGLILMELKQAKLNLSRTTTDLADIRASVESGNXXXXXXXXXXXXXXXXXXXNSSK 227
               +       EL++  +N+ +   +++ ++ +  S                      S  
Sbjct:   458 LHAAVASAKKELEEVNVNIEKAAAEVSCLKLASSSLQLELEKEKSTLASIKQREGMASIA 517

Query:   228 VSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRA 287
             V+S+E E+++TR ++   +          +++  +LQ+ + EA+E K + + AR E+ +A
Sbjct:   518 VASIEAEIDRTRSEIASVQSKEKDAREKMVELPKQLQQAAEEADEAKSLAEVAREELRKA 577

Query:   288 ISEIEQTKTKIKTAEMRLXXXXXXXXXXXXXXXXXXXXXXXLSYSDG-LSGVLSPKPEGV 346
               E EQ K    T E RL                       L  S+  L    +  P  V
Sbjct:   578 KEEAEQAKAGASTMESRLFAAQKEIEAAKASERLALAAIKALEESESTLKANDTDSPRSV 637

Query:   347 VTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKV 393
              TL+ EEY  L+ +A +AEEL+  RV  AV +++EA  ++M  L+K+
Sbjct:   638 -TLSLEEYYELSKRAHEAEELANARVAAAVSRIEEAKETEMRSLEKL 683

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009903 "chloroplast avoidance movement" evidence=IMP

GO:0009904 "chloroplast accumulation movement" evidence=IMP

TAIR|locus:2160046 AT5G42880 "AT5G42880" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 69/249 (27%), Positives = 119/249 (47%)

Query:    24 IDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEH-DMEEVDIGNVEEQASLLEKDLILK 82
             IDT++PFESV+EAVS+FGGI  WK   HK+   E   M + ++  ++E     +++  L 
Sbjct:   134 IDTASPFESVREAVSKFGGITDWKA--HKIQTIERRKMVDEELEKIQEAMPEYKREAELA 191

Query:    83 ERETLEVLKELEATKMIIEELKLKLQK-EASEVNATLESKLVNENVAADLNSGNENMPPV 141
             E    + L+ELE TK +IEELKL+L+K E  E  A  +S+L    V  ++  G  N   V
Sbjct:   192 EEAKYDALEELENTKGLIEELKLELEKAEKEEQQAKQDSELAQMRVE-EMEKGVANEASV 250

Query:   142 LKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVE 201
               + Q +  ++ + ++ + + S+      V       L++ +L   R     ADI A +E
Sbjct:   251 AVKTQLEVAKARQVSATSELRSVREEIEMVSNEYKDMLREKELAAER-----ADI-AVLE 304

Query:   202 SGNXXXXXXXXXXXXXXXXXXXNSSKVSSLEEELNQTRLKLQLAKDANGSD-DTNTMDIS 260
             +                      S   + LE E  + R  + +A+D +  + +     + 
Sbjct:   305 AKEIERTMDGLSIELIATKELLESVHTAHLEAE--EKRFSVAMARDQDVYNWEKELKMVE 362

Query:   261 WELQRLSSE 269
              +++RL+ E
Sbjct:   363 NDIERLNQE 371

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2825751 AT1G45545 "AT1G45545" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 81/345 (23%), Positives = 158/345 (45%)

Query:    61 EEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKL--QKEASEV-NAT 117
             EE+++ + E ++ L EKDL  K+ E   VLK  +  K + E L +++   K+  E+ +AT
Sbjct:   296 EEIEMVSNEYESLLTEKDLAAKKAED-SVLKAKDVEKQM-EGLTMEVIATKQLLELAHAT 353

Query:   118 -LES--KLVNENVAADLNSGNENMPPVLKEVQ-KDSHESLEGASHNLVGSLNTHPSSVPG 173
              LE+  K ++  +A D +  N+     + E + K   + ++ A  ++   L T  S++  
Sbjct:   354 HLEAQEKKLDAAMARDQDVYNQEKELKMVEDEIKRFRQDIDAAD-DVKTKLKT-ASALQQ 411

Query:   174 LILMELKQAK-LNLSRTTTDLADIRASVESGNXXXXXXXXXXXXXXXXXXXNSSKVSSLE 232
              +  E+   K  N+ +     +DI+A+V+S                         V SL+
Sbjct:   412 DLRAEIAAYKDSNMGKRNN--SDIQAAVDSARKELEEVISNIEKANSEVKTLKIIVGSLQ 469

Query:   233 EELNQTRLKLQLAKDANGSD--DTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISE 290
              EL + +  L   +  N  D  +    +I+ +LQ  S EAEE K +  AAR E+ +A  E
Sbjct:   470 SELAREKHDLSETRQRNREDTREEKCTEIAKKLQEASREAEEAKSLAIAAREELRKAKEE 529

Query:   291 IEQTKTKIKTAEMRLXXXXXXXXXXXXXXXXXXXXXXXLSYSDGLSGV--LSPKPEGVVT 348
              ++ KT +   E +L                       L  ++  + +  +S  P+ ++ 
Sbjct:   530 SDEAKTGLSAVERQLMESKKEMEASRASEKLALAAIKALQETEYANKIEDISSSPKSII- 588

Query:   349 LTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKV 393
             ++ EEY  L+ +A + EE + +++ + V +++ A   +  IL+ +
Sbjct:   589 ISVEEYYELSKQAHEVEEAANRKLAEIVSKIEVAKEEESRILENL 633

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176625 AT5G55860 "AT5G55860" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 68/324 (20%), Positives = 132/324 (40%)

Query:    85 ETLEVL-KELEATKMIIEELKL---KLQKEASEVNATLESKL------VNENVAADLNSG 134
             E +E+L KE+ A    +E+ KL   + +KE SE+ A  E +       + E+    L   
Sbjct:   202 EKIELLRKEIAAVNESVEQTKLACSQARKEQSEIFAEKEIQQKSYKAGMEESAKKSLALK 261

Query:   135 NENMPPVLK--EVQ-KDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTT 191
             NE  P   K  EVQ  +++  ++     +  +  +   SV G+ L EL +AK    +   
Sbjct:   262 NEFDPEFAKKLEVQLTETYNEIDELQKQMETAKASDIDSVNGVSL-ELNEAKGLFEKLVE 320

Query:   192 DLADIRASVESGNXXXXXXXXXXXXXXXXXXXNSSKVSSLEEELNQTRLKLQLAKDANGS 251
             +   ++  VES                       S    L  +L++++ +L+        
Sbjct:   321 EEKSLQELVESLKAELKNVKMEHDEVEAKEAEIESVAGDLHLKLSRSKSELEQCVTEESK 380

Query:   252 DDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLXXXXXX 311
                   D+   + ++SSE E  ++  +  R++    + E E     ++ +E+ L      
Sbjct:   381 AKAALEDMMLTINQISSETEAARREAEGMRNKAKELMKEAESAHLALEDSELHLRVALDE 440

Query:   312 XXXXXXXXXXXXXXXXXLSYSDGLSGVLSPKPEGV--VTLTYEEYSSLTCKAQDAEELSK 369
                              +S     +   +    G   +TL+ EE+ SL+ +A+  ++L++
Sbjct:   441 AEEAKAAETKALEQIKSMSEKTNAARNSTSSESGSQSITLSQEEFKSLSKRAEVFDKLAE 500

Query:   370 KRVVDAVIQVDEANVSKMEILKKV 393
              +V  A+ QV+    S+ E LKK+
Sbjct:   501 MKVAAALAQVEAVRASENETLKKL 524

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2130729 AT4G17210 "AT4G17210" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
 Identities = 51/189 (26%), Positives = 91/189 (48%)

Query:    17 EVGVRAEIDTSAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEE---VDIGNVEEQAS 73
             EVG   EIDT APF+SV++A+S F  + + K    +LS       +    D+ + E Q  
Sbjct:    21 EVG---EIDTRAPFQSVRDALSLFRQVSFSKKQPPRLSSSSSSQSQDTTTDVSDKEMQLL 77

Query:    74 LLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNS 133
             L E+++   +R  + +   + A    + +L    Q++A+++   LES   +   A    S
Sbjct:    78 LAEQEM---DRVKICLDGSVAAKAQALSDLD-SAQRKAADLRVKLESIKHSRKCAI---S 130

Query:   134 GNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDL 193
                 M   L+++Q ++ E+ E    + +  L T    +    L ELKQ + NLS     L
Sbjct:   131 TKHTMNQRLEQLQSENQET-ESTREDYI--LITAELFMAKYELAELKQ-QFNLS-VEERL 185

Query:   194 ADIRASVES 202
             A+++ + E+
Sbjct:   186 AELQRAEEA 194

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	402
pfam05701	484	pfam05701, DUF827, Plant protein of unknown functi	3e-37
pfam05701	484	pfam05701, DUF827, Plant protein of unknown functi	5e-15
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003

>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827)

 Score =  140 bits (354), Expect = 3e-37
 Identities = 112/328 (34%), Positives = 178/328 (54%), Gaps = 12/328 (3%)

Query: 69  EEQASLLEKDLILKERETLEVLKELEATKMIIEELKLK-LQKEASEVNATLESKLVNENV 127
            ++A        + E++  E+ KE+ A K  +E      L+ E   + A LE     E  
Sbjct: 148 LKRAEEAICASKVNEKKVEELTKEIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETY 207

Query: 128 AADLNSGNENMPPVLKEV--QKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLN 185
             +L    + +  + +++  +KD  +  E ++            +    +L EL++AK N
Sbjct: 208 EKELKEAEKELERLKQDLDPEKDLEKLAEASAELESLQKEISIMASVASVLKELEEAKAN 267

Query: 186 LSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA 245
           L +   +   +R  VES  ++LE+E+  LE+ RE+        SSLE ELN+T+ + +  
Sbjct: 268 LEKAAEEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKESK 327

Query: 246 KDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRL 305
                 +      I  +LQ+ SSEAEE +K  +AAR E+ +   E EQTK  ++TAE+RL
Sbjct: 328 AREKMVE------IPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTKAALETAELRL 381

Query: 306 VAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAE 365
            AA K  EAA+AAEA+A+AEIKAL  S+  +   SP+    +TL+ EEY  L+ KA++AE
Sbjct: 382 EAALKEAEAAKAAEALALAEIKALQESEESAKADSPRK---ITLSLEEYEELSKKAEEAE 438

Query: 366 ELSKKRVVDAVIQVDEANVSKMEILKKV 393
           EL++K+V  A+ QV+EA  S+ E LKK+
Sbjct: 439 ELAEKKVAAALAQVEEAKESENESLKKL 466

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484

>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827)

 Score = 76.2 bits (187), Expect = 5e-15
 Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 27  SAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEKDLILKERET 86
           SAPFESVKEAVS FGGI  WK    + SE    ++E ++   +E+A+ L+K+L + E+E 
Sbjct: 1   SAPFESVKEAVSLFGGIADWKAHLPQRSE-RVLVKETELMLAQEEANKLKKELEVAEKEK 59

Query: 87  LEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVAADLNSGN 135
           L+VLKELE+TK  +E+LKLKL+K   E     +   + +  A +L  G 
Sbjct: 60  LQVLKELESTKRTVEDLKLKLEKAEKEEQQAKQDSELAKLRAEELEQGI 108

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 52/278 (18%), Positives = 97/278 (34%), Gaps = 46/278 (16%)

Query: 49  SQHKLSEPEHDMEEV--DIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLK 106
              +L + + ++  +   I   ++Q + LEK L   E E   +  +L  T   +++L+ +
Sbjct: 36  DDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95

Query: 107 L-----QKEASEVNATLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLV 161
           +     +  A EV    + + + E +AA   SG  N PP L    +D+  S+        
Sbjct: 96  IADLNARLNALEVQEREQRRRLAEQLAALQRSG-RNPPPALLVSPEDAQRSV--RLAIYY 152

Query: 162 GSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERL 221
           G+LN               +    L  T   LA +RA + +   +L          + +L
Sbjct: 153 GALNP-----------ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKL 201

Query: 222 SLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAAR 281
           +    +      +LN                         EL     + EE +      +
Sbjct: 202 AQLLEERKKTLAQLNS------------------------ELSADQKKLEELRANESRLK 237

Query: 282 SEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAE 319
           +E+  A +   + +     AE    A  +  EA R  E
Sbjct: 238 NEIASAEAAAAKAREAAAAAE-AAAARARAAEAKRTGE 274

Length = 420

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 22/256 (8%)

Query: 62  EVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESK 121
           E     +E Q + LE++L     E  E+ K LE  + ++EEL  K++    E    ++ K
Sbjct: 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK 295

Query: 122 LVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQ 181
           +    + A++ S   ++       ++   E  E     L   ++            +L  
Sbjct: 296 I--GELEAEIASLERSI-----AEKERELEDAEERLAKLEAEID------------KLLA 336

Query: 182 AKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLK 241
               L R   +    R  +     +L++E    E  R  L     + +   +EL   R K
Sbjct: 337 EIEELEREIEEERKRRDKLTEEYAELKEEL---EDLRAELEEVDKEFAETRDELKDYREK 393

Query: 242 LQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTA 301
           L+  K            +  ELQRLS E  +         +++     E E    +IK  
Sbjct: 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453

Query: 302 EMRLVAARKMKEAARA 317
           E +L            
Sbjct: 454 EWKLEQLAADLSKYEQ 469

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 9/190 (4%)

Query: 62  EVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESK 121
           E +I  + E+   LE +L   E    E+ +++EA K  +EE +  L++    +    E+K
Sbjct: 301 EGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAK 360

Query: 122 LVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVG---------SLNTHPSSVP 172
              E   + L    E +   L+E   +    L    + L                 S   
Sbjct: 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420

Query: 173 GLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLE 232
             +  ELK+ +  L    T+L ++   +E   ++LE+ R  L++    L+    ++  LE
Sbjct: 421 EDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLE 480

Query: 233 EELNQTRLKL 242
           +EL+    +L
Sbjct: 481 KELSSLEARL 490

Length = 1163

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 12/136 (8%)

Query: 192 DLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGS 251
            L   +A +E+ NK LE   + LE    ++S   S++  + E + +   KL   KD    
Sbjct: 32  ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER-- 89

Query: 252 DDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKM 311
                     EL+ L+ E +  K+  ++   E+   + EIE+ + +I+  + RL    K 
Sbjct: 90  ----------ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139

Query: 312 KEAARAAEAVAVAEIK 327
              A A     VAEI+
Sbjct: 140 LAEAEARLEEEVAEIR 155

Length = 239

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 55/285 (19%), Positives = 114/285 (40%), Gaps = 29/285 (10%)

Query: 50  QHKLSEPEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQK 109
           + +L E E  +    +  + ++   LE++L   E E  E+ +ELE  +  IEELK +L++
Sbjct: 219 KAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278

Query: 110 EASEVNATLESKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPS 169
              E+    E  L  +    +L          L+E  ++    LE     L        +
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISL----LRERLEELENELEELEERLEELKEKIEA 334

Query: 170 -----SVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLN 224
                     +L EL+Q    L     +L +  +++    ++L       E  RE L+  
Sbjct: 335 LKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL------FEALREELAEL 388

Query: 225 SSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEV 284
            ++++ +  EL + + +++  ++               L+RLS   E+ K+      +E+
Sbjct: 389 EAELAEIRNELEELKREIESLEE--------------RLERLSERLEDLKEELKELEAEL 434

Query: 285 LRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKAL 329
               +E+E+   +++  E +L   R   +      A    E++ L
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	402
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	100.0
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.95
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.97
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.85
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.56
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.46
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.08
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.06
KOG0971	1243	consensus Microtubule-associated protein dynactin	93.99
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.29
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	93.26
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	93.02
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	92.36
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	91.31
KOG0996	1293	consensus Structural maintenance of chromosome pro	90.94
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	90.91
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	90.13
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	89.84
PRK11637	428	AmiB activator; Provisional	89.79
KOG0933	1174	consensus Structural maintenance of chromosome pro	88.85
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	88.62
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	88.35
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	87.93
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	86.71
PRK02224	880	chromosome segregation protein; Provisional	82.42
PRK04778	569	septation ring formation regulator EzrA; Provision	81.44
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	81.3
KOG0971	1243	consensus Microtubule-associated protein dynactin	80.39

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=6.2e-68  Score=556.07  Aligned_cols=371  Identities=42%  Similarity=0.498  Sum_probs=322.9

Q ss_pred             CCCcchHHHHHHhccCccccCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 015693           27 SAPFESVKEAVSRFGGIGYWKPSQHKLSEPEHDMEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLK  106 (402)
Q Consensus        27 ~apf~SVkeAV~~FGg~~~w~~~~~~~~~~~~~~~~~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~  106 (402)
                      +|||+|||+||++|||+++|++|  ++++++...+ .+|.++++++++|+++|+++|.+|++||.||+.||++|++|+++
T Consensus         1 ~apf~SVk~Avs~FG~~~~~k~~--~~~e~~~~~e-~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~k   77 (522)
T PF05701_consen    1 SAPFESVKEAVSLFGGSIDWKKH--QSLERVKEKE-TELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLK   77 (522)
T ss_pred             CCCChHHHHHHHHcCCccccccC--CchhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999998  4445555555 69999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHhhhhhhhhhhhhh-----------------------------HhhhhcCCCCCCC-----------------
Q 015693          107 LQKEA-SEVNATLESKLVNEN-----------------------------VAADLNSGNENMP-----------------  139 (402)
Q Consensus       107 l~k~~-~e~~a~~d~ela~~~-----------------------------~~~el~~~~~~~~-----------------  139 (402)
                      |++++ +..++.+|+++++.+                             ++++|.+++.++.                 
T Consensus        78 Le~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~  157 (522)
T PF05701_consen   78 LEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAAL  157 (522)
T ss_pred             HHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 889999999999421                             3677777665551                 


Q ss_pred             ------------------------cchhhhhhhhh-hhhhccccccccC-------------------------------
Q 015693          140 ------------------------PVLKEVQKDSH-ESLEGASHNLVGS-------------------------------  163 (402)
Q Consensus       140 ------------------------~~~ke~~~~~~-~~~~~~~e~~~~~-------------------------------  163 (402)
                                              ..+++.....+ .|.++. +++++.                               
T Consensus       158 ~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAe-ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~  236 (522)
T PF05701_consen  158 KQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAE-EERIEIAAEREQDAEEWEKELEEAEEELEELKEELEA  236 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    00111111111 233322 222222                               


Q ss_pred             ---------------------C---CCCC--------------CCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 015693          164 ---------------------L---NTHP--------------SSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNK  205 (402)
Q Consensus       164 ---------------------~---~~~~--------------~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~  205 (402)
                                           +   ....              ...++++++||+++|.+|+++++|+++|+.++++|+.
T Consensus       237 ~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~  316 (522)
T PF05701_consen  237 AKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRS  316 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 0   0000              1348899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015693          206 KLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVL  285 (402)
Q Consensus       206 ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~  285 (402)
                      +|+++|.++..++++++++++.|++|+.+|++++++|+.++..+.+.+..+.+|+..|++++.|+++||.++..++.|+.
T Consensus       317 ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~  396 (522)
T PF05701_consen  317 ELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVE  396 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888766668999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCcceechHhhhhhhhhHHHHH
Q 015693          286 RAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQDAE  365 (402)
Q Consensus       286 k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~e~~~~~~~~~~~~vITlS~eEY~~Ls~kA~eaE  365 (402)
                      +++.+++++++.|.|++.||+++++|++|||+||++|+++|++|+++.++.+.+.+++++.||||++||++|++||++++
T Consensus       397 ~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~e  476 (522)
T PF05701_consen  397 KAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAE  476 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888776555577777999999999999999999


Q ss_pred             HhhHhHHHHHHHhHHHHhhhHHHHHHHHHhhhhhhc
Q 015693          366 ELSKKRVVDAVIQVDEANVSKMEILKKVGGSHRRNQ  401 (402)
Q Consensus       366 E~A~kKVaaA~aqVeaak~Se~e~L~KLEea~re~~  401 (402)
                      ++|+|||++||+||+++|+|++++|+||++++++|.
T Consensus       477 e~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~  512 (522)
T PF05701_consen  477 ELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIE  512 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999985

Several sequences in this family are described as being myosin heavy chain-like.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.95  E-value=0.0041  Score=66.63  Aligned_cols=237  Identities=21%  Similarity=0.247  Sum_probs=150.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh----hhhhhhh---hHhhhhcCC
Q 015693           63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEAS-EVNATL----ESKLVNE---NVAADLNSG  134 (402)
Q Consensus        63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~~-e~~a~~----d~ela~~---~~~~el~~~  134 (402)
                      .+|...++.+..|..++.    ..-++=..|..|...|..|+.+|..... ......    .+.....   .+..||...
T Consensus       218 ~~leeae~~l~~L~~e~~----~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~a  293 (522)
T PF05701_consen  218 KELEEAEEELEELKEELE----AAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEA  293 (522)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHH
Confidence            356666667777776662    2222334788899999999998877663 222211    0000000   011121111


Q ss_pred             CCCCCcchhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015693          135 NENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSL  214 (402)
Q Consensus       135 ~~~~~~~~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~L  214 (402)
                      +.++-.+..+.     ...               ..+..++..||+.+|.+|..++.......+.|.+|..+|.+.+..|
T Consensus       294 k~~L~~~k~E~-----~~L---------------~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL  353 (522)
T PF05701_consen  294 KKELEKAKEEA-----SSL---------------RASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL  353 (522)
T ss_pred             HHHHHHHHHHH-----HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence            11111110000     000               1346789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693          215 EKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQT  294 (402)
Q Consensus       215 e~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqt  294 (402)
                      +..+..+......+..|...|.++..+...++..-       ..+...+..+..++++++.....+...+.-+..+++.+
T Consensus       354 ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea-------~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaa  426 (522)
T PF05701_consen  354 EAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEA-------EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAA  426 (522)
T ss_pred             HHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888888888888888887774221       12233455566666666666665555555555555444


Q ss_pred             hhhH----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015693          295 KTKI----------------------------------------------KTAEMRLVAARKMKEAARAAEAVAVAEIKA  328 (402)
Q Consensus       295 ka~i----------------------------------------------~TaE~RL~Aa~KE~EAAKAsEa~ALaeika  328 (402)
                      |+.-                                              ..+..|.-+|.-.++++|+||.-+|..+..
T Consensus       427 KasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~  506 (522)
T PF05701_consen  427 KASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEE  506 (522)
T ss_pred             HHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4322                                              125667778888888888888888777766


Q ss_pred             hc
Q 015693          329 LS  330 (402)
Q Consensus       329 Ls  330 (402)
                      +.
T Consensus       507 ~~  508 (522)
T PF05701_consen  507 AM  508 (522)
T ss_pred             HH
Confidence            54

Several sequences in this family are described as being myosin heavy chain-like.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.97  E-value=3.2  Score=47.60  Aligned_cols=51  Identities=12%  Similarity=0.146  Sum_probs=25.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 015693          261 WELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKM  311 (402)
Q Consensus       261 ~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE  311 (402)
                      ..++.+..+.+...........++..++.++...+..+.....++......
T Consensus       448 ~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~  498 (1164)
T TIGR02169       448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ  498 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555555555555555555554444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.85  E-value=5.4  Score=46.98  Aligned_cols=33  Identities=12%  Similarity=0.153  Sum_probs=18.4

Q ss_pred             hhHhHHHHHHHhHHHHhhhHHHHHHHHHhhhhh
Q 015693          367 LSKKRVVDAVIQVDEANVSKMEILKKVGGSHRR  399 (402)
Q Consensus       367 ~A~kKVaaA~aqVeaak~Se~e~L~KLEea~re  399 (402)
                      -..+|...-..+.+....+...++..+++..++
T Consensus       974 ~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~ 1006 (1163)
T COG1196         974 EVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555666666666666655555443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.56  E-value=4.3  Score=46.50  Aligned_cols=21  Identities=19%  Similarity=0.186  Sum_probs=11.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHh
Q 015693           63 VDIGNVEEQASLLEKDLILKE   83 (402)
Q Consensus        63 ~el~k~~eq~~~~ek~l~~~e   83 (402)
                      .++..++.++..++..+....
T Consensus       258 ~~l~~~~~~~~~~~~~~~~~~  278 (1164)
T TIGR02169       258 EEISELEKRLEEIEQLLEELN  278 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555554443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.46  E-value=5.4  Score=39.17  Aligned_cols=67  Identities=28%  Similarity=0.279  Sum_probs=47.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015693          262 ELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKA  328 (402)
Q Consensus       262 ~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeika  328 (402)
                      .+..|..|...++........++..+..+.+.-...+.....++..-.+.+-+++++=..+++.|.-
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e  156 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE  156 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777777777777777777777777777777777777777766666666655553

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.08  E-value=6  Score=38.19  Aligned_cols=221  Identities=17%  Similarity=0.203  Sum_probs=126.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hHhhhhcCCCCCCCcc
Q 015693           63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNE-NVAADLNSGNENMPPV  141 (402)
Q Consensus        63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~~e~~a~~d~ela~~-~~~~el~~~~~~~~~~  141 (402)
                      .+++..++++..++..|..++...-++-.++.+-.+=|..|-..|++......... ..|..- ....+       .-..
T Consensus         8 ~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~-~kL~~~e~~~de-------~er~   79 (237)
T PF00261_consen    8 DELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEAT-EKLEEAEKRADE-------SERA   79 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHH-HHHHHHHHHHHH-------HCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHH-------HHHH
Confidence            48888889999999998888888888888888888888888777776653221110 000000 00000       0000


Q ss_pred             hhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015693          142 LKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERL  221 (402)
Q Consensus       142 ~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre  221 (402)
                      .+.. ++.  +.. + +-+           ++.+...|++++.-+..+-..       .+-....|.-.-..|+++-++.
T Consensus        80 ~k~l-E~r--~~~-~-eer-----------i~~lE~~l~ea~~~~ee~e~k-------~~E~~rkl~~~E~~Le~aEeR~  136 (237)
T PF00261_consen   80 RKVL-ENR--EQS-D-EER-----------IEELEQQLKEAKRRAEEAERK-------YEEVERKLKVLEQELERAEERA  136 (237)
T ss_dssp             HHHH-HHH--HHH-H-HHH-----------HHHCHHHHHHHHHHHHHHHHH-------HHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HhH--HHH-H-HHH-----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            0000 000  000 0 001           223334444444433333322       2333444555556677777888


Q ss_pred             hhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 015693          222 SLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTA  301 (402)
Q Consensus       222 ~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~Ta  301 (402)
                      ......|..|+.+|..+...|..+...+.........+-..|..|......+-.-++.+...+.++-..+......+...
T Consensus       137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~  216 (237)
T PF00261_consen  137 EAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE  216 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888889999999999888888754442211122334445666666666666667777666666666666666666666


Q ss_pred             HHHHHHHHHHHHH
Q 015693          302 EMRLVAARKMKEA  314 (402)
Q Consensus       302 E~RL~Aa~KE~EA  314 (402)
                      ..+...+.++++.
T Consensus       217 k~~~~~~~~eld~  229 (237)
T PF00261_consen  217 KEKYKKVQEELDQ  229 (237)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.06  E-value=7.7  Score=42.31  Aligned_cols=68  Identities=18%  Similarity=0.169  Sum_probs=52.9

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHH
Q 015693          172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTR  239 (402)
Q Consensus       172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr  239 (402)
                      ++.+..|+..+|.-+....+++..|+.....|+.+|...|..|..-.---.-....|++|..+|.=++
T Consensus       150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            77889999999999999999999999999999999998888766443333344556677777776665

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.99  E-value=8.1  Score=44.40  Aligned_cols=135  Identities=20%  Similarity=0.251  Sum_probs=75.1

Q ss_pred             HHHHHHHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccC--
Q 015693          178 ELKQAKLNLSRTTTDLADIRA----SVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGS--  251 (402)
Q Consensus       178 EL~qaK~nL~ka~~El~~i~a----svesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~--  251 (402)
                      -|++-..-|.-|.--+.++.+    ..--|.++|++-+.++..++......+..+..+++.+-..+-...++-.+|+.  
T Consensus       372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~  451 (1243)
T KOG0971|consen  372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVE  451 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence            344444444433333444443    33456677777777776665555555555555555555555555444434321  


Q ss_pred             -CCCccchhHHHHHHhHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 015693          252 -DDTNTMDISWELQRLSSEAEEF---KKMG----DAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMK  312 (402)
Q Consensus       252 -~~~~~~~i~~~Lqql~~EaE~a---K~~a----e~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~  312 (402)
                       .-+...+|--.+..|..+..+.   +-+-    +..++=...+++|+++++.++..++.|..+|.+-+
T Consensus       452 qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~  520 (1243)
T KOG0971|consen  452 QLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETV  520 (1243)
T ss_pred             HHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence             1112334444444454444333   3332    33344456689999999999999999999987643

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.29  E-value=22  Score=42.08  Aligned_cols=129  Identities=19%  Similarity=0.296  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCC
Q 015693          174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDD  253 (402)
Q Consensus       174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~  253 (402)
                      -.+..+.+++..+.=+-.++..+..-.+.+.+.++..+..|....+........+.+|..+|...+.++..+        
T Consensus       490 ~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~--------  561 (1293)
T KOG0996|consen  490 PLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEK--------  561 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--------
Confidence            456667777777777777888888888888888888888888887777777777777777777776665554        


Q ss_pred             CccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015693          254 TNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSD  333 (402)
Q Consensus       254 ~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~e  333 (402)
                                   ..+....+.+....+.-+.++++.++.++......               .+.--+|+.|--+-++.
T Consensus       562 -------------~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~---------------~s~~kVl~al~r~kesG  613 (1293)
T KOG0996|consen  562 -------------EKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS---------------RSRNKVLDALMRLKESG  613 (1293)
T ss_pred             -------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhhhHHHHHHHHHHHcC
Confidence                         22333344444444444455555555555444333               34444556665555555


Q ss_pred             CCCCC
Q 015693          334 GLSGV  338 (402)
Q Consensus       334 ~~~~~  338 (402)
                      .-+++
T Consensus       614 ~i~Gf  618 (1293)
T KOG0996|consen  614 RIPGF  618 (1293)
T ss_pred             CCCcc
Confidence            44443

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=93.26  E-value=22  Score=42.04  Aligned_cols=156  Identities=17%  Similarity=0.191  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHh-------HHHhhh
Q 015693          175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLK-------LQLAKD  247 (402)
Q Consensus       175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~e-------Leaaka  247 (402)
                      +..++......|....+.+..+....+.+...+...+..+..+..........+.+|+.+++..+..       +..+..
T Consensus       756 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~  835 (1163)
T COG1196         756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE  835 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555444333444444444444444444444444444444444       333321


Q ss_pred             hccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693          248 ANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIK  327 (402)
Q Consensus       248 ~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeik  327 (402)
                      .-.........+...+..+....+.++......+.+...+...+...+.....++.+|..+...+...+..-..+...+.
T Consensus       836 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  915 (1163)
T COG1196         836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE  915 (1163)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111112344455566677777777777778888888888888888888888888888888888888887777777777


Q ss_pred             hhc
Q 015693          328 ALS  330 (402)
Q Consensus       328 aLs  330 (402)
                      .+.
T Consensus       916 ~l~  918 (1163)
T COG1196         916 ELE  918 (1163)
T ss_pred             HHH
Confidence            653

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=93.02  E-value=20  Score=40.96  Aligned_cols=16  Identities=31%  Similarity=0.542  Sum_probs=6.3

Q ss_pred             hhhhHHHHHHHHHHHH
Q 015693           64 DIGNVEEQASLLEKDL   79 (402)
Q Consensus        64 el~k~~eq~~~~ek~l   79 (402)
                      ++..++.++..++..+
T Consensus       678 e~~~l~~~~~~l~~~l  693 (1179)
T TIGR02168       678 EIEELEEKIEELEEKI  693 (1179)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333444443333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=92.36  E-value=24  Score=40.29  Aligned_cols=47  Identities=23%  Similarity=0.235  Sum_probs=27.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015693           63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQK  109 (402)
Q Consensus        63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k  109 (402)
                      .++..+..++..++..+...+..--.+-.++.....-++.+..+++.
T Consensus       670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~  716 (1179)
T TIGR02168       670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ  716 (1179)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666777777777777666555444444455555555555554443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=91.31  E-value=43  Score=41.90  Aligned_cols=47  Identities=21%  Similarity=0.282  Sum_probs=39.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693           65 IGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA  111 (402)
Q Consensus        65 l~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~  111 (402)
                      ..++..+..++.+.++.+|..-..+++.+..-..-|++||.+|+...
T Consensus      1268 ~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~ 1314 (1930)
T KOG0161|consen 1268 RSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEET 1314 (1930)
T ss_pred             HHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777888888999999888888888888999999999988655

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.94  E-value=40  Score=39.98  Aligned_cols=179  Identities=19%  Similarity=0.185  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------hhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhH
Q 015693          195 DIRASVESGNKKLEKERLSLEKTRERLSLN-------SSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLS  267 (402)
Q Consensus       195 ~i~asvesLr~ELekeK~~Le~lREre~~a-------s~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~  267 (402)
                      .-+..++.++..|.+-...+.++.-....+       ...++.|+.+...++.++..+.......+....++-..+....
T Consensus       904 ~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~  983 (1293)
T KOG0996|consen  904 AQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAE  983 (1293)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            334455555555555555555444333333       3344445555555555444442211111112223333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCc
Q 015693          268 SEAEEFKKMGDAARSEVLRAISEIEQTKT-KIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGV  346 (402)
Q Consensus       268 ~EaE~aK~~ae~ak~E~~k~k~E~Eqtka-~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~e~~~~~~~~~~~~v  346 (402)
                      .-..+++..-...+.++...+.....-++ .|. ++.+|++....+--.+.....=...++-|+-..++      +....
T Consensus       984 ~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~t------E~~~~ 1056 (1293)
T KOG0996|consen  984 ESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQPEKELKKLSLCNMT------ETRPQ 1056 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhHHHhhCccccccch------hhccc
Confidence            33334444444444444444444444444 445 77778877777777777666666555555543332      33345


Q ss_pred             ceechHhhhhhhhhHHHHHHhhHhHHHHHHHhHHHH
Q 015693          347 VTLTYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEA  382 (402)
Q Consensus       347 ITlS~eEY~~Ls~kA~eaEE~A~kKVaaA~aqVeaa  382 (402)
                      |++...-|++|-..-  -+.....+|+....+++..
T Consensus      1057 ~~~~~~~~Eeleae~--~~~~i~e~i~~lE~~~~~l 1090 (1293)
T KOG0996|consen 1057 IELDVESPEELEAEM--LEDNINEKIALLEKRVEEL 1090 (1293)
T ss_pred             cccccCChHHHHhhh--cHhhHHHHHHHHHHHHHHh
Confidence            566667777775443  3444455788888888776

>TIGR00606 rad50 rad50

Probab=90.91  E-value=39  Score=40.52  Aligned_cols=44  Identities=9%  Similarity=0.023  Sum_probs=19.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015693          265 RLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAA  308 (402)
Q Consensus       265 ql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa  308 (402)
                      ++..+.+..+......+.++..+..+++-....+..++.++...
T Consensus       885 ~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  928 (1311)
T TIGR00606       885 QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL  928 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=90.13  E-value=45  Score=39.21  Aligned_cols=56  Identities=23%  Similarity=0.309  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcccc
Q 015693          175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSS  230 (402)
Q Consensus       175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsS  230 (402)
                      -...+++.+-++..+..+...+....++.+-.|..+-..|..+.+..+.-...+.|
T Consensus       753 ~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s  808 (1074)
T KOG0250|consen  753 KEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRS  808 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            33445566666666666666666677777777777777777776666655555655

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=89.84  E-value=8.4  Score=43.76  Aligned_cols=135  Identities=13%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHH
Q 015693          172 PGLILMELKQAKLNLSRTTTDLADIRA-SVES-------GNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQ  243 (402)
Q Consensus       172 ~~s~~~EL~qaK~nL~ka~~El~~i~a-sves-------Lr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLe  243 (402)
                      .+.+..||+-.-..|++.++++..||+ -++.       ...++..-+..|..+......+...|..|+.+| ++..++.
T Consensus        12 ~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~   90 (775)
T PF10174_consen   12 NERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELN   90 (775)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHH
Confidence            346677777777777777777777665 1222       222233333334444444456667788888888 7777766


Q ss_pred             HhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 015693          244 LAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAA  315 (402)
Q Consensus       244 aaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAA  315 (402)
                      -+...-.+.......+.. +......+.....+-+....|+..++       ..+..++.|+...+....++
T Consensus        91 rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr-------~~lE~~q~~~e~~q~~l~~~  154 (775)
T PF10174_consen   91 RLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLR-------KTLEELQLRIETQQQTLDKA  154 (775)
T ss_pred             HHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            554321111112222222 44444444444444444444444444       44444444444444444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK11637 AmiB activator; Provisional

Probab=89.79  E-value=28  Score=36.34  Aligned_cols=71  Identities=10%  Similarity=0.197  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693          175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLA  245 (402)
Q Consensus       175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaa  245 (402)
                      +..++++.+..|..+..++..+...+..|..+|......|..+..+.......|..|+.++...+.++...
T Consensus        52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444455555554444444443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=88.85  E-value=55  Score=38.42  Aligned_cols=197  Identities=16%  Similarity=0.212  Sum_probs=115.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhhhhHhhhhcCCCCCCCcc
Q 015693           63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA-SEVNATLESKLVNENVAADLNSGNENMPPV  141 (402)
Q Consensus        63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~-~e~~a~~d~ela~~~~~~el~~~~~~~~~~  141 (402)
                      .+|+.++.|+...+++|..-|++    |+.|+.+..-..+|+++|+-.. .-......                      
T Consensus       677 ~~l~~~~~~~~~~q~el~~le~e----L~~le~~~~kf~~l~~ql~l~~~~l~l~~~r----------------------  730 (1174)
T KOG0933|consen  677 QKLKQAQKELRAIQKELEALERE----LKSLEAQSQKFRDLKQQLELKLHELALLEKR----------------------  730 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            35566666666666666665554    7888899999999999998665 22111100                      


Q ss_pred             hhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015693          142 LKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERL  221 (402)
Q Consensus       142 ~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre  221 (402)
                         . ...+.|-.              ......++.++++++.+|.-...-+..-...+..|-+.|...+..-++     
T Consensus       731 ---~-~~~e~~~~--------------~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~-----  787 (1174)
T KOG0933|consen  731 ---L-EQNEFHKL--------------LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRER-----  787 (1174)
T ss_pred             ---H-hcChHhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh-----
Confidence               0 01111111              122556788888888888766656666666666677777665554321     


Q ss_pred             hhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 015693          222 SLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTA  301 (402)
Q Consensus       222 ~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~Ta  301 (402)
                           .+..|+.+|+.++.+++.-...=++....-..|.++..++..+..-.+..-+........++.++...++.+..+
T Consensus       788 -----rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~  862 (1174)
T KOG0933|consen  788 -----RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV  862 (1174)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                 234466777777777766522111211233445555666666666666666666666666766666666666666


Q ss_pred             HHHHHHHHHHHH
Q 015693          302 EMRLVAARKMKE  313 (402)
Q Consensus       302 E~RL~Aa~KE~E  313 (402)
                      +.-...++.++.
T Consensus       863 ~~~~~~~~~el~  874 (1174)
T KOG0933|consen  863 EKDVKKAQAELK  874 (1174)
T ss_pred             HhHHHHHHHHHH
Confidence            665555555443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=88.62  E-value=26  Score=34.47  Aligned_cols=132  Identities=20%  Similarity=0.251  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc--ccHHHHHHHHHHhHHHhhhhccC
Q 015693          174 LILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKV--SSLEEELNQTRLKLQLAKDANGS  251 (402)
Q Consensus       174 s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~V--sSLE~EL~~tr~eLeaaka~E~~  251 (402)
                      .+...|+.+++.++..++.+..+...++.|.++...-...|..++++...+....  .+=..+++....+++.++..   
T Consensus        28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r---  104 (239)
T COG1579          28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKER---  104 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---
Confidence            5666777777777777777777666666666666665565655555544322221  11122233333333333211   


Q ss_pred             CCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015693          252 DDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAE  319 (402)
Q Consensus       252 ~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsE  319 (402)
                                 +..+..+..++....+....+..-++..+..++..+..++.++......+.-..-+-
T Consensus       105 -----------~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~  161 (239)
T COG1579         105 -----------INSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQEL  161 (239)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       122333344444444444444455555556666666666666666666555544433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=88.35  E-value=63  Score=38.52  Aligned_cols=78  Identities=18%  Similarity=0.259  Sum_probs=59.7

Q ss_pred             CchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhh
Q 015693          170 SVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKD  247 (402)
Q Consensus       170 ~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka  247 (402)
                      .++..+..+|+++..-|.........+.......+..++..+..+...+.........+..|+.+....+.++...+.
T Consensus       600 ~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  677 (1201)
T PF12128_consen  600 ASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKE  677 (1201)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777888888888888877777777788888888888887777777777777778888888777777777643

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=87.93  E-value=24  Score=38.67  Aligned_cols=123  Identities=18%  Similarity=0.201  Sum_probs=88.4

Q ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccC
Q 015693          172 PGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGS  251 (402)
Q Consensus       172 ~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~  251 (402)
                      +..+..-|++......+...++..++..++.|+..+.+.-..+...+++.......++.|+++++.++.....+.+...+
T Consensus        94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~  173 (546)
T KOG0977|consen   94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKR  173 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            55677888888888888888888899999999999998877888889999989999999999999999998887433322


Q ss_pred             CCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693          252 DDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQT  294 (402)
Q Consensus       252 ~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqt  294 (402)
                      .......|+..|+.+....++...---.....+..+++++.-.
T Consensus       174 Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~  216 (546)
T KOG0977|consen  174 LKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFL  216 (546)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            2223455555566655555555444444444455555554433

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=86.71  E-value=8.2  Score=39.98  Aligned_cols=51  Identities=22%  Similarity=0.226  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhh
Q 015693          196 IRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAK  246 (402)
Q Consensus       196 i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaak  246 (402)
                      |..-.+.|..+....+..|..++++-...+..|+.+..+|.+..-+|+.++
T Consensus       264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK  314 (359)
T PF10498_consen  264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK  314 (359)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555555555555553

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PRK02224 chromosome segregation protein; Provisional

Probab=82.42  E-value=94  Score=35.23  Aligned_cols=46  Identities=13%  Similarity=0.189  Sum_probs=25.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693           64 DIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEA  111 (402)
Q Consensus        64 el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~k~~  111 (402)
                      -...++.++..++..+..++.  -.+...|.....-+.+|..++....
T Consensus       181 ~~~~~~~~~~~~~~~l~~~~~--~~l~~~l~~~~~~l~el~~~i~~~~  226 (880)
T PRK02224        181 VLSDQRGSLDQLKAQIEEKEE--KDLHERLNGLESELAELDEEIERYE  226 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667767766666433  2333455555555566655555443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=81.44  E-value=87  Score=34.18  Aligned_cols=158  Identities=11%  Similarity=0.127  Sum_probs=87.2

Q ss_pred             hhhHHHHHHHH-----HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhh
Q 015693          172 PGLILMELKQA-----KLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAK  246 (402)
Q Consensus       172 ~~s~~~EL~qa-----K~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaak  246 (402)
                      ...+...+.++     ..+|..+...+..|..-++.|-+-|+++...-.............+..++.....+..++..++
T Consensus       258 i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~  337 (569)
T PRK04778        258 IQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK  337 (569)
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555553     3355666667777777777777777777776666655555555556666666666666666663


Q ss_pred             hh----ccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693          247 DA----NGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVA  322 (402)
Q Consensus       247 a~----E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~A  322 (402)
                      ..    +.-.. ....+...|+.+.............-......+..+.+.....+...+.........+..-+..|.-|
T Consensus       338 ~sY~l~~~e~~-~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eA  416 (569)
T PRK04778        338 QSYTLNESELE-SVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEA  416 (569)
T ss_pred             HccccCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32    10000 11222233333333333333333333333445555555566666666666666666666667777666


Q ss_pred             HHHHHhhc
Q 015693          323 VAEIKALS  330 (402)
Q Consensus       323 LaeikaLs  330 (402)
                      ...++.+.
T Consensus       417 r~kL~~~~  424 (569)
T PRK04778        417 REKLERYR  424 (569)
T ss_pred             HHHHHHHH
Confidence            66665554

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=81.30  E-value=28  Score=30.65  Aligned_cols=48  Identities=25%  Similarity=0.326  Sum_probs=25.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 015693          261 WELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAA  315 (402)
Q Consensus       261 ~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAA  315 (402)
                      ..|..+..+...++       .++..++.+++.++..+...+..|..-+.+++.-
T Consensus        59 ~~L~~lr~e~~~~~-------~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e  106 (132)
T PF07926_consen   59 KELQQLREELQELQ-------QEINELKAEAESAKAELEESEASWEEQKEQLEKE  106 (132)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34555555544444       4445555555555555555666665555555543

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=80.39  E-value=1.3e+02  Score=35.35  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCcce
Q 015693          269 EAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVT  348 (402)
Q Consensus       269 EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaLse~e~~~~~~~~~~~~vIT  348 (402)
                      +-..+-++.+.-+.|+..++.-.|.-...++.+|+.|---+-.+.||--+|++.-    .|.+....-.       ..|.
T Consensus       397 d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~----qLtdknlnlE-------ekVk  465 (1243)
T KOG0971|consen  397 DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVE----QLTDKNLNLE-------EKVK  465 (1243)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH----HHHhhccCHH-------HHHH
Confidence            3344555566666777777777777777888888888888888899988888753    2332211111       0112


Q ss_pred             e---chHhhhhhhhhHHHHHHhhHhHHHHHHHhHHHHhhhHHHHHHHHHhhhhh
Q 015693          349 L---TYEEYSSLTCKAQDAEELSKKRVVDAVIQVDEANVSKMEILKKVGGSHRR  399 (402)
Q Consensus       349 l---S~eEY~~Ls~kA~eaEE~A~kKVaaA~aqVeaak~Se~e~L~KLEea~re  399 (402)
                      +   .+.+.+.|..--.+--|..+.-+-+-+.+||-+|-..++...+.+.+++-
T Consensus       466 lLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet  519 (1243)
T KOG0971|consen  466 LLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQET  519 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            1   22345555555555666677778888999999999999999998887753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	402
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 38/251 (15%), Positives = 89/251 (35%), Gaps = 7/251 (2%)

Query: 69   EEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLESKLVNENVA 128
            EE    +E  +  +E  + ++  E +  +  + +L+ +L++E +        K+  +   
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985

Query: 129  ADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGL--ILMELKQAKLNL 186
              +      M     ++ K+  + LE    +L  +L         L  +  + +     L
Sbjct: 986  KKMEDDILIMEDQNNKLTKER-KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044

Query: 187  SRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNS----SKVSSLEEELNQTRLKL 242
                      R  +E   +KLE E   L +    L        ++++  EEEL     +L
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL 1104

Query: 243  QLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAE 302
            +       +      ++   +  L  + E  K   + A  +      E+E  KT+++   
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTL 1164

Query: 303  MRLVAARKMKE 313
                  ++++ 
Sbjct: 1165 DTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 21/154 (13%), Positives = 53/154 (34%), Gaps = 3/154 (1%)

Query: 177  MELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELN 236
             EL++    +     +  +    +++  KK++++ L LE+   +L    +    L+ E  
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE---QLEEEEAARQKLQLEKV 979

Query: 237  QTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKT 296
                K++  +D     +     ++ E + L     +          +         + ++
Sbjct: 980  TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039

Query: 297  KIKTAEMRLVAARKMKEAARAAEAVAVAEIKALS 330
             I   E+RL    K ++     +     E   L 
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 9e-06
 Identities = 59/340 (17%), Positives = 110/340 (32%), Gaps = 68/340 (20%)

Query: 57  EHDMEEVDIGNVEEQASLLEKDLILKERE--TLEVLKELEATKMIIEE---------LKL 105
           EH  +  DI +V E A     +   K+ +     +L + E   +I+ +            
Sbjct: 13  EHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 106 KLQKEASEVNATLESKL-VNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSL 164
            L K+   V   +E  L +N           +  P ++  +  +  + L   +       
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--- 127

Query: 165 NTHPSSVPGL-ILMELKQAKLNLSRTTTDLADIRASVE----SGNKKLEKERLSLEKTRE 219
                +V  L   ++L+QA L L R   ++      ++    SG   +  +     K + 
Sbjct: 128 ---KYNVSRLQPYLKLRQALLEL-RPAKNVL-----IDGVLGSGKTWVALDVCLSYKVQC 178

Query: 220 RLS-----LNSSKVSSLEEEL-NQTRLKLQLAKDANGSDDT------NTMDISWELQRLS 267
           ++      LN    +S E  L    +L  Q+  +     D           I  EL+RL 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 268 SEAEEFKK----MGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAV 323
              + ++     + +   ++   A +       KI      L+  R  K+      A   
Sbjct: 239 KS-KPYENCLLVLLNVQNAKAWNAFN----LSCKI------LLTTRF-KQVTDFLSAATT 286

Query: 324 AEIKALSYSDGLSGVLSPKPEGVVTLTYEEYSSLTCKAQD 363
             I    +S  L+       E    L       L C+ QD
Sbjct: 287 THISLDHHSMTLT-----PDEVKSLLL----KYLDCRPQD 317

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 65/401 (16%), Positives = 122/401 (30%), Gaps = 102/401 (25%)

Query: 21  RAEIDTSAP--FESVKEAVSRFGGIGYWKPSQHKLS--------EPEH------------ 58
           R++  ++      S++  + R       K   ++            +             
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRL-----LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 59  ---DMEEVDI--GNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASE 113
                +  D          SL    + L   E   +L  L+      ++L     +E   
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLP----REVLT 324

Query: 114 VNATLESKLVNENVAADLNSGNENMPPV----LKEVQKDSHESLEGASH-NLVGSLNTHP 168
            N      ++ E++   L +  +N   V    L  + + S   LE A +  +   L+  P
Sbjct: 325 TNP-RRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 169 SSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEK--TRERLSLNSS 226
            S    I   L      LS    D+  I++ V     KL K  L +EK      +S+ S 
Sbjct: 383 PSAH--IPTIL------LSLIWFDV--IKSDVMVVVNKLHKYSL-VEKQPKESTISIPSI 431

Query: 227 KVSSLEEELNQTRL------KLQLAKDANGSDDT-NTMD------ISWELQ--RLSSEAE 271
            +    +  N+  L         + K  +  D     +D      I   L+         
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 272 EFKKM--------------GDA--ARSEVLRAISEIEQTK---TKIKTAEMRLVAARKMK 312
            F+ +                A  A   +L  + +++  K           RLV A  + 
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LD 550

Query: 313 EAARAAEAVAVAEIKALSYSDGLSGVLSPKPEGVVTLTYEE 353
              +  E +  ++     Y+D L   L  + E +    +EE
Sbjct: 551 FLPKIEENLICSK-----YTDLLRIALMAEDEAI----FEE 582

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 27/193 (13%), Positives = 72/193 (37%), Gaps = 32/193 (16%)

Query: 60   MEEVDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQKEASEVNATLE 119
            +E   +   ++    LE  ++  +R+  E  KE ++    +  L++    E  ++ + +E
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 120  SKLVNENVAADLNSGNENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMEL 179
               ++E  A +  +   ++   + +++K+ H++                         E 
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT-----------------------EK 1007

Query: 180  KQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSK---------VSS 230
            K  +    +   +   + + ++  N  L+ E+  L +     +   ++            
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067

Query: 231  LEEELNQTRLKLQ 243
            LE +LN  RL+ Q
Sbjct: 1068 LELDLNDERLRYQ 1080

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	402
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.65
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.61
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	93.97
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	93.14
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.46
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	81.62

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.65  E-value=0.15  Score=48.29  Aligned_cols=139  Identities=16%  Similarity=0.171  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCC
Q 015693          175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDT  254 (402)
Q Consensus       175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~  254 (402)
                      .+.+|...-..|......+..+...+..|..++..-+..+..++.........+..++.++..++..+...+..-.... 
T Consensus         9 ~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-   87 (256)
T 3na7_A            9 QLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-   87 (256)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence            3444444444444444444444444444444444444444444444444444444444444444444444322110000 


Q ss_pred             ccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 015693          255 NTMDISWELQRLSSEAEEFKKMGDAARSEVLRAISEIEQTKTKIKTAEMRLVAARKMKEAARAA  318 (402)
Q Consensus       255 ~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~E~Eqtka~i~TaE~RL~Aa~KE~EAAKAs  318 (402)
                      .    +..++.+..|.+.++........++..++..++..+..+..++.++......+...++.
T Consensus        88 ~----~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~  147 (256)
T 3na7_A           88 S----ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL  147 (256)
T ss_dssp             S----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1    22355566666777766666666666666666666666666655555555555444443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.61  E-value=1.2  Score=41.95  Aligned_cols=71  Identities=11%  Similarity=0.159  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch--hccccHHHHHHHHHHhHHHh
Q 015693          175 ILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLEKTRERLSLNS--SKVSSLEEELNQTRLKLQLA  245 (402)
Q Consensus       175 ~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le~lREre~~as--~~VsSLE~EL~~tr~eLeaa  245 (402)
                      +..++...+..+.....++..+...+..+..++...+.-+.+.+.+.....  -....|.-|+...+.++..+
T Consensus        37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~l  109 (256)
T 3na7_A           37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQA  109 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444555555555555554443221  12444555555544444443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=93.97  E-value=3.1  Score=36.78  Aligned_cols=45  Identities=20%  Similarity=0.164  Sum_probs=21.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015693           64 DIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQ  108 (402)
Q Consensus        64 el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~  108 (402)
                      +++.+..++..++.++...+..--..-.++...+.-+..+...+.
T Consensus        14 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (284)
T 1c1g_A           14 DKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELD   58 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555544444444444444444444444444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=93.14  E-value=0.22  Score=56.58  Aligned_cols=46  Identities=17%  Similarity=0.046  Sum_probs=23.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015693           63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKLQ  108 (402)
Q Consensus        63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l~  108 (402)
                      .++..+++++.+++..+...+...-.+-..+.....-+.+|..+|+
T Consensus       857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~  902 (1184)
T 1i84_S          857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ  902 (1184)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777766666655544333333333333344444444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=90.46  E-value=6.1  Score=49.62  Aligned_cols=135  Identities=10%  Similarity=0.119  Sum_probs=74.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhhhhhhHhhhhcCCC
Q 015693           63 VDIGNVEEQASLLEKDLILKERETLEVLKELEATKMIIEELKLKL-------QKEASEVNATLESKLVNENVAADLNSGN  135 (402)
Q Consensus        63 ~el~k~~eq~~~~ek~l~~~e~~~~~vl~eLe~tk~~ve~Lk~~l-------~k~~~e~~a~~d~ela~~~~~~el~~~~  135 (402)
                      ..+.+++.++...+..|..|..++-+.|.++...+..++.-|...       ++.+.+.++.++                
T Consensus      1934 ~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~---------------- 1997 (3245)
T 3vkg_A         1934 AQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKV---------------- 1997 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            456777888888888888888888788887776655555444333       332222222211                


Q ss_pred             CCCCcchhhhhhhhhhhhhccccccccCCCCCCCCchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015693          136 ENMPPVLKEVQKDSHESLEGASHNLVGSLNTHPSSVPGLILMELKQAKLNLSRTTTDLADIRASVESGNKKLEKERLSLE  215 (402)
Q Consensus       136 ~~~~~~~ke~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~EL~qaK~nL~ka~~El~~i~asvesLr~ELekeK~~Le  215 (402)
                                  .|.    .+....+++         .-.+.+|.++..+|..++..|..++..+..|..+|.+-+...+
T Consensus      1998 ------------~~e----~dL~~A~Pa---------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A         1998 ------------KAY----ADLEKAEPT---------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp             ------------HHH----HCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------HHH----HHHhhcCCC---------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        111    111111111         2256677777777777777766666666655555555444444


Q ss_pred             HHHHHhhhchhccccHHHHHHHHHHhHHHh
Q 015693          216 KTRERLSLNSSKVSSLEEELNQTRLKLQLA  245 (402)
Q Consensus       216 ~lREre~~as~~VsSLE~EL~~tr~eLeaa  245 (402)
                      ..       ......|+.+++.+..+|..+
T Consensus      2053 ~~-------~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A         2053 TL-------IRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp             HH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            33       223345666666666666665

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=81.62  E-value=28  Score=30.85  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhhhchhccccHHHHHHHHHHhHHHhhhhccCCCCccchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015693          210 ERLSLEKTRERLSLNSSKVSSLEEELNQTRLKLQLAKDANGSDDTNTMDISWELQRLSSEAEEFKKMGDAARSEVLRAIS  289 (402)
Q Consensus       210 eK~~Le~lREre~~as~~VsSLE~EL~~tr~eLeaaka~E~~~~~~~~~i~~~Lqql~~EaE~aK~~ae~ak~E~~k~k~  289 (402)
                      .-..|++..++...+...|..|+.+|..+-..|..+...+..........-..|..|+.....|..-++.+-..+.++-.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888999999999999999999999988888855443221122344566778888888888888888888888888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015693          290 EIEQTKTKIKTAEMRLVAARKMKEAARAAEAVAVAEIKAL  329 (402)
Q Consensus       290 E~Eqtka~i~TaE~RL~Aa~KE~EAAKAsEa~ALaeikaL  329 (402)
                      +++...-.+.....+......++.       -+|.+|..+
T Consensus       106 ~id~lEd~L~~~Kek~~~i~~eLd-------~tl~el~~~  138 (155)
T 2efr_A          106 SIDDLEDELYAQKLKYKAISEEMK-------QLEDKVEEL  138 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhc
Confidence            888877777777777777777776       345555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00