Citrus Sinensis ID: 015697

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
MAFFRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN
cccccHHHHHHHHHHHHHccccccccHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHcccccccEEEccccccccccccccEEcEEEccccccccccccHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHccccc
cHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccccEEEcccEEEccccEHHHHHHHccEccccccEcHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccEcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccc
MAFFRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKSELgkaqlgniTVDMVIGGMRGMTGLlwetslldpdegirfrglsipecqkllpaakpdgeplpEGLLWLLLtgkvpskeqvDGLSKElrdratvpdyVYKAidalpvtahpmtqfaSGVMALQVQSEFQEAYEKgihkskyweptyedsLNLIARVPVVAAYVYQRIykdgkiipkddsldyggnfshmlgfddpKMLELMRLYVTIhsdheggnvsahTGHLVASALSDPYLSFAAALNglagplhglaNQEVLLWIKSVVDecgenvtteqLKDYVWKTLnsgkvvpgfghgvlrktdprytcQREFAlkhlpddplfQLVSKLFEVvppiltklgkvsn
maffrsvtalsrlrsrvgqqsnlsnSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKselgkaqlgnitvdMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGkvpskeqvdglskelrdratVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLnsgkvvpgfghgvlrktDPRYTCQREFALKHLPDDPLFQLVSKLFEVvppiltklgkvsn
MAFFRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDgeplpegllwlllTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN
****************************************************************AQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPA*******LPEGLLWLLLTGKVP***********LRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKL*****
***************************************LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVS*
MAFFRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPS*********ELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN
*******************QSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLG****
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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAFFRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLxxxxxxxxxxxxxxxxxxxxxLGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query402 2.2.26 [Sep-21-2011]
P49298471 Citrate synthase, mitocho N/A no 1.0 0.853 0.967 0.0
O80433472 Citrate synthase, mitocho N/A no 1.0 0.851 0.846 0.0
P20115474 Citrate synthase 4, mitoc yes no 1.0 0.848 0.848 0.0
Q9M1D3464 Citrate synthase 5, mitoc no no 0.980 0.849 0.816 0.0
Q43175471 Citrate synthase, mitocho N/A no 0.992 0.847 0.784 0.0
P83372469 Citrate synthase, mitocho N/A no 0.977 0.837 0.791 0.0
Q16P20467 Probable citrate synthase N/A no 0.980 0.843 0.599 1e-142
Q17GM7467 Probable citrate synthase N/A no 0.980 0.843 0.599 1e-142
Q0QHL3465 Probable citrate synthase N/A no 0.935 0.808 0.622 1e-139
Q4S5X1469 Citrate synthase, mitocho N/A no 0.987 0.846 0.567 1e-139
>sp|P49298|CISY_CITMA Citrate synthase, mitochondrial OS=Citrus maxima GN=CIT PE=2 SV=1 Back     alignment and function desciption
 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/402 (96%), Positives = 394/402 (98%)

Query: 1   MAFFRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKS 60
           MA  RS TALSRLRSR GQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKS
Sbjct: 1   MASLRSATALSRLRSRAGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKS 60

Query: 61  ELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGE 120
           +LGKAQLGNIT+D+VIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGE
Sbjct: 61  DLGKAQLGNITIDVVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGE 120

Query: 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVM 180
           PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPV+AHPMTQFASGVM
Sbjct: 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVSAHPMTQFASGVM 180

Query: 181 ALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSL 240
           ALQVQSEFQEAYEKGIHKSK WEPT EDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSL
Sbjct: 181 ALQVQSEFQEAYEKGIHKSKSWEPTSEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSL 240

Query: 241 DYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALN 300
           DYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSF AALN
Sbjct: 241 DYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFLAALN 300

Query: 301 GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTD 360
           GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTD
Sbjct: 301 GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTD 360

Query: 361 PRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN 402
           PRYTCQREFALKHLPDDPLFQLVSKL+EVVPPILTKLGKV N
Sbjct: 361 PRYTCQREFALKHLPDDPLFQLVSKLYEVVPPILTKLGKVKN 402

Citrus maxima (taxid: 37334)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1
>sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial OS=Daucus carota GN=CS PE=2 SV=1 Back     alignment and function description
>sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial OS=Arabidopsis thaliana GN=CSY4 PE=1 SV=3 Back     alignment and function description
>sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial OS=Arabidopsis thaliana GN=CSY5 PE=1 SV=2 Back     alignment and function description
>sp|Q43175|CISY_SOLTU Citrate synthase, mitochondrial OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|P83372|CISY_FRAAN Citrate synthase, mitochondrial OS=Fragaria ananassa GN=MCSI PE=1 SV=1 Back     alignment and function description
>sp|Q16P20|CISY2_AEDAE Probable citrate synthase 2, mitochondrial OS=Aedes aegypti GN=AAEL011789 PE=3 SV=1 Back     alignment and function description
>sp|Q17GM7|CISY1_AEDAE Probable citrate synthase 1, mitochondrial OS=Aedes aegypti GN=AAEL002956 PE=3 SV=1 Back     alignment and function description
>sp|Q0QHL3|CISY_GLOMM Probable citrate synthase, mitochondrial OS=Glossina morsitans morsitans PE=2 SV=1 Back     alignment and function description
>sp|Q4S5X1|CISY_TETNG Citrate synthase, mitochondrial OS=Tetraodon nigroviridis GN=cs PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
325301868471 citrate synthase [Citrus maxima] 1.0 0.853 0.995 0.0
40646744464 mitochondrial citrate synthase precursor 1.0 0.866 0.995 0.0
255928569471 citrate synthase [Citrus sinensis] 1.0 0.853 0.992 0.0
1352088471 RecName: Full=Citrate synthase, mitochon 1.0 0.853 0.967 0.0
449436243471 PREDICTED: citrate synthase, mitochondri 1.0 0.853 0.905 0.0
224121066478 predicted protein [Populus trichocarpa] 1.0 0.841 0.884 0.0
15982952473 citrate synthase [Prunus persica] 1.0 0.849 0.880 0.0
388891235473 citrate synthase [Malus baccata] 1.0 0.849 0.878 0.0
302745202473 citrate synthase [Malus xiaojinensis] 1.0 0.849 0.870 0.0
225450299472 PREDICTED: citrate synthase, mitochondri 1.0 0.851 0.870 0.0
>gi|325301868|gb|ADZ05826.1| citrate synthase [Citrus maxima] Back     alignment and taxonomy information
 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/402 (99%), Positives = 401/402 (99%)

Query: 1   MAFFRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKS 60
           MAFFRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKS
Sbjct: 1   MAFFRSVTALSRLRSRVGQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVKS 60

Query: 61  ELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGE 120
           ELGKAQLGNIT+DMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGE
Sbjct: 61  ELGKAQLGNITIDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDGE 120

Query: 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVM 180
           PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVM
Sbjct: 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVM 180

Query: 181 ALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSL 240
           ALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSL
Sbjct: 181 ALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSL 240

Query: 241 DYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALN 300
           DYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALN
Sbjct: 241 DYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALN 300

Query: 301 GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTD 360
           GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTD
Sbjct: 301 GLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTD 360

Query: 361 PRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN 402
           PRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKV N
Sbjct: 361 PRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKN 402

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|40646744|gb|AAR88248.1| mitochondrial citrate synthase precursor [Citrus junos] Back     alignment and taxonomy information
>gi|255928569|gb|ACU42176.1| citrate synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|1352088|sp|P49298.1|CISY_CITMA RecName: Full=Citrate synthase, mitochondrial; Flags: Precursor gi|624676|gb|AAA82743.1| citrate synthase precursor [Citrus maxima] Back     alignment and taxonomy information
>gi|449436243|ref|XP_004135902.1| PREDICTED: citrate synthase, mitochondrial-like [Cucumis sativus] gi|449524948|ref|XP_004169483.1| PREDICTED: citrate synthase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224121066|ref|XP_002330895.1| predicted protein [Populus trichocarpa] gi|222872717|gb|EEF09848.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15982952|gb|AAL11504.1|AF367444_1 citrate synthase [Prunus persica] Back     alignment and taxonomy information
>gi|388891235|gb|AFK80525.1| citrate synthase [Malus baccata] Back     alignment and taxonomy information
>gi|302745202|gb|ADL62695.1| citrate synthase [Malus xiaojinensis] Back     alignment and taxonomy information
>gi|225450299|ref|XP_002271451.1| PREDICTED: citrate synthase, mitochondrial [Vitis vinifera] gi|297741211|emb|CBI32162.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
TAIR|locus:2050554474 ATCS [Arabidopsis thaliana (ta 1.0 0.848 0.818 2.7e-178
TAIR|locus:2101467464 CSY5 "citrate synthase 5" [Ara 0.980 0.849 0.789 1.8e-167
UNIPROTKB|Q16P20467 AAEL011789 "Probable citrate s 0.980 0.843 0.574 1.1e-121
UNIPROTKB|Q17GM7467 AAEL002956 "Probable citrate s 0.980 0.843 0.574 1.1e-121
FB|FBgn0261955464 kdn "knockdown" [Drosophila me 0.980 0.849 0.568 2e-118
UNIPROTKB|Q0QHL3465 Q0QHL3 "Probable citrate synth 0.935 0.808 0.593 2.6e-118
UNIPROTKB|Q6S9V5469 cs "Citrate synthase, mitochon 0.987 0.846 0.542 4.2e-118
UNIPROTKB|Q4S5X1469 cs "Citrate synthase, mitochon 0.987 0.846 0.542 5.4e-118
ZFIN|ZDB-GENE-030131-1058468 cs "citrate synthase" [Danio r 0.985 0.846 0.547 6.9e-118
UNIPROTKB|Q0GNE0469 CS "Citrate synthase, mitochon 0.982 0.842 0.546 1.1e-117
TAIR|locus:2050554 ATCS [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1731 (614.4 bits), Expect = 2.7e-178, P = 2.7e-178
 Identities = 330/403 (81%), Positives = 361/403 (89%)

Query:     1 MAFFRSVTALSRLRSRV-GQQSNLSNSVRWLQMQSSADLDLHSQLKEMIPEQQERLKKVK 59
             M FFRSV+A +RLRSRV GQQS+LSNSVRW+QMQSS DLDL SQL+E+IPEQQ+RLKK+K
Sbjct:     1 MVFFRSVSAFTRLRSRVQGQQSSLSNSVRWIQMQSSTDLDLKSQLQELIPEQQDRLKKLK 60

Query:    60 SELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKPDX 119
             SE GK QLGNITVDMVIGGMRGMTGLLWETSLLDP+EGIRFRGLSIPECQK+LP A+   
Sbjct:    61 SEHGKVQLGNITVDMVIGGMRGMTGLLWETSLLDPEEGIRFRGLSIPECQKVLPTAQSGA 120

Query:   120 XXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGV 179
                         TGKVPSKEQV+ LSK+L +RA VPDYVY AIDALP TAHPMTQFASGV
Sbjct:   121 EPLPEGLLWLLLTGKVPSKEQVEALSKDLANRAAVPDYVYNAIDALPSTAHPMTQFASGV 180

Query:   180 MALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDS 239
             MALQVQSEFQ+AYE GIHKSK+WEPTYED LNLIARVPVVAAYVY+R+YK+G  IP D S
Sbjct:   181 MALQVQSEFQKAYENGIHKSKFWEPTYEDCLNLIARVPVVAAYVYRRMYKNGDSIPSDKS 240

Query:   240 LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAAL 299
             LDYG NFSHMLGFDD K+ ELMRLY+TIHSDHEGGNVSAHTGHLV SALSDPYLSFAAAL
Sbjct:   241 LDYGANFSHMLGFDDEKVKELMRLYITIHSDHEGGNVSAHTGHLVGSALSDPYLSFAAAL 300

Query:   300 NGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKT 359
             NGLAGPLHGLANQEVLLWIKSVV+ECGE+++ EQLK+YVWKTLNSGKV+PG+GHGVLR T
Sbjct:   301 NGLAGPLHGLANQEVLLWIKSVVEECGEDISKEQLKEYVWKTLNSGKVIPGYGHGVLRNT 360

Query:   360 DPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN 402
             DPRY CQREFALKHLPDDPLFQLVSKL+EVVPP+LT+LGKV N
Sbjct:   361 DPRYVCQREFALKHLPDDPLFQLVSKLYEVVPPVLTELGKVKN 403
GO:0004108 "citrate (Si)-synthase activity" evidence=IEA;ISS;IDA
GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS
GO:0006099 "tricarboxylic acid cycle" evidence=IEA;ISS;TAS
GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA
GO:0046912 "transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005524 "ATP binding" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
TAIR|locus:2101467 CSY5 "citrate synthase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q16P20 AAEL011789 "Probable citrate synthase 2, mitochondrial" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
UNIPROTKB|Q17GM7 AAEL002956 "Probable citrate synthase 1, mitochondrial" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
FB|FBgn0261955 kdn "knockdown" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q0QHL3 Q0QHL3 "Probable citrate synthase, mitochondrial" [Glossina morsitans morsitans (taxid:37546)] Back     alignment and assigned GO terms
UNIPROTKB|Q6S9V5 cs "Citrate synthase, mitochondrial" [Kajikia audax (taxid:13721)] Back     alignment and assigned GO terms
UNIPROTKB|Q4S5X1 cs "Citrate synthase, mitochondrial" [Tetraodon nigroviridis (taxid:99883)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1058 cs "citrate synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q0GNE0 CS "Citrate synthase, mitochondrial" [Iguana iguana (taxid:8517)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9W401CISY_DROME2, ., 3, ., 3, ., 10.59590.98000.8491yesno
Q6S9V5CISY_TETAD2, ., 3, ., 3, ., 10.56780.98750.8464N/Ano
Q6S9V7CISY_KATPE2, ., 3, ., 3, ., 10.56530.98750.8464N/Ano
Q6S9V6CISY_XIPGL2, ., 3, ., 3, ., 10.56530.98750.8464N/Ano
P23007CISY_CHICK2, ., 3, ., 3, ., 10.57720.91540.8498yesno
Q29RK1CISY_BOVIN2, ., 3, ., 3, ., 10.57970.98000.8454yesno
Q6S9V9CISY_THUAL2, ., 3, ., 3, ., 10.56530.98750.8464N/Ano
Q6S9V8CISY_THUOB2, ., 3, ., 3, ., 10.56530.98750.8464N/Ano
P83372CISY_FRAAN2, ., 3, ., 3, ., 10.79160.97760.8379N/Ano
Q7ZVY5CISY_DANRE2, ., 3, ., 3, ., 10.57280.98500.8461yesno
O80433CISY_DAUCA2, ., 3, ., 3, ., 10.84611.00.8516N/Ano
P34575CISY_CAEEL2, ., 3, ., 3, ., 10.55880.92780.7970yesno
Q9M1D3CISY5_ARATH2, ., 3, ., 3, ., 10.81630.98000.8491nono
Q17GM7CISY1_AEDAE2, ., 3, ., 3, ., 10.59940.98000.8436N/Ano
P51044CISY_ASPNG2, ., 3, ., 3, ., 10.54390.90290.7642yesno
Q9CZU6CISY_MOUSE2, ., 3, ., 3, ., 10.57460.98000.8491yesno
O00098CISY_EMENI2, ., 3, ., 3, ., 10.56040.90290.7658yesno
P20115CISY4_ARATH2, ., 3, ., 3, ., 10.84861.00.8481yesno
Q4S5X1CISY_TETNG2, ., 3, ., 3, ., 10.56780.98750.8464N/Ano
Q4QDX3CISY_LEIMA2, ., 3, ., 3, ., 10.51130.95020.8127yesno
P79024CISY_CANTR2, ., 3, ., 3, ., 10.53190.96010.8265N/Ano
Q10306CISY_SCHPO2, ., 3, ., 3, ., 10.54670.90290.7515yesno
P00889CISY_PIG2, ., 3, ., 3, ., 10.57460.98000.8491yesno
O75390CISY_HUMAN2, ., 3, ., 3, ., 10.60270.91790.7918yesno
P49298CISY_CITMA2, ., 3, ., 3, ., 10.96761.00.8535N/Ano
Q43175CISY_SOLTU2, ., 3, ., 3, ., 10.78410.99250.8471N/Ano
Q28DK1CISY_XENTR2, ., 3, ., 3, ., 10.59830.92030.7905yesno
Q0GNE1CISY_AMBCR2, ., 3, ., 3, ., 10.56920.98250.8422N/Ano
Q0GNE0CISY_IGUIG2, ., 3, ., 3, ., 10.57170.98250.8422N/Ano
Q0QHL3CISY_GLOMM2, ., 3, ., 3, ., 10.62200.93530.8086N/Ano
Q16P20CISY2_AEDAE2, ., 3, ., 3, ., 10.59940.98000.8436N/Ano
A4HXU4CISY_LEIIN2, ., 3, ., 3, ., 10.50620.95020.8127yesno
Q8VHF5CISY_RAT2, ., 3, ., 3, ., 10.58910.91790.7918yesno
P00890CISY1_YEAST2, ., 3, ., 3, ., 10.52130.98750.8288yesno
Q553V1CISYM_DICDI2, ., 3, ., 3, ., 10.55890.95520.8347yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.3.10.994
3rd Layer2.3.30.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
cd06105427 cd06105, ScCit1-2_like, Saccharomyces cerevisiae ( 0.0
TIGR01793427 TIGR01793, cit_synth_euk, citrate (Si)-synthase, e 0.0
cd06103426 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) 0.0
PLN02456455 PLN02456, PLN02456, citrate synthase 0.0
PRK09569437 PRK09569, PRK09569, type I citrate synthase; Revie 1e-172
cd06106428 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc 1e-170
pfam00285352 pfam00285, Citrate_synt, Citrate synthase 1e-104
cd06118358 cd06118, citrate_synt_like_1, Citrate synthase (CS 4e-95
COG0372390 COG0372, GltA, Citrate synthase [Energy production 1e-78
cd06101265 cd06101, citrate_synt, Citrate synthase (CS) catal 1e-50
cd06099213 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citr 2e-49
cd06110356 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) cit 4e-42
cd06114400 cd06114, EcCS_like, Escherichia coli (Ec) citrate 7e-37
TIGR01800368 TIGR01800, cit_synth_II, 2-methylcitrate synthase/ 2e-36
cd06112373 cd06112, citrate_synt_like_1_1, Citrate synthase ( 1e-34
PRK05614419 PRK05614, gltA, type II citrate synthase; Reviewed 2e-31
PRK14036377 PRK14036, PRK14036, citrate synthase; Provisional 1e-30
cd06107382 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec 2e-30
PRK14035371 PRK14035, PRK14035, citrate synthase; Provisional 2e-29
cd06111362 cd06111, DsCS_like, Cold-active citrate synthase ( 2e-29
cd06113406 cd06113, citrate_synt_like_1_2, Citrate synthase ( 3e-28
PRK14034372 PRK14034, PRK14034, citrate synthase; Provisional 4e-28
PRK14032447 PRK14032, PRK14032, citrate synthase; Provisional 8e-28
PRK12349369 PRK12349, PRK12349, citrate synthase 3; Provisiona 2e-26
PRK14033375 PRK14033, PRK14033, citrate synthase; Provisional 1e-25
cd06115410 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath 3e-25
cd06116384 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) 1e-24
TIGR01798412 TIGR01798, cit_synth_I, citrate synthase I (hexame 3e-24
cd06108363 cd06108, Ec2MCS_like, Escherichia coli (Ec) 2-meth 8e-23
cd06117366 cd06117, Ec2MCS_like_1, Subgroup of Escherichia co 1e-18
PRK12351378 PRK12351, PRK12351, methylcitrate synthase; Provis 1e-17
PRK14037377 PRK14037, PRK14037, citrate synthase; Provisional 2e-16
cd06109349 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citra 3e-16
PRK12350353 PRK12350, PRK12350, citrate synthase 2; Provisiona 6e-12
cd06102282 cd06102, citrate_synt_like_2, Citrate synthase (CS 6e-10
cd06101265 cd06101, citrate_synt, Citrate synthase (CS) catal 1e-09
>gnl|CDD|99858 cd06105, ScCit1-2_like, Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information 
 Score =  706 bits (1823), Expect = 0.0
 Identities = 238/363 (65%), Positives = 297/363 (81%)

Query: 40  LHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIR 99
           L  +L E+IP++Q R+KK + E GK  +G +TVDMV GGMRG+ GL+WETS+LDP+EGIR
Sbjct: 1   LKDRLAELIPKEQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIR 60

Query: 100 FRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVY 159
           FRGLSIPECQKLLP A    EPLPEGL WLLLTG+VP+KEQV  LSKE   RA +P +V 
Sbjct: 61  FRGLSIPECQKLLPKAPGGEEPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVV 120

Query: 160 KAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVV 219
             +D  P   HPM+Q ++ + AL  +S+F +AY +GIHKSKYWE  YEDS++LIA++P V
Sbjct: 121 TMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKSKYWEYVYEDSMDLIAKLPCV 180

Query: 220 AAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAH 279
           AA +Y+ +Y+ GKII  D +LD+  NF++MLG+ DP+  ELMRLY+TIHSDHEGGNVSAH
Sbjct: 181 AAKIYRNLYRGGKIIAIDSNLDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 240

Query: 280 TGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVW 339
           T HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL+W+  +  E G++V+ EQL++YVW
Sbjct: 241 TTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVW 300

Query: 340 KTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGK 399
           KTLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP+DPLF+LVS+L+++VPP+LT+ GK
Sbjct: 301 KTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGK 360

Query: 400 VSN 402
             N
Sbjct: 361 AKN 363

Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). ScCit1 is a nuclear-encoded mitochondrial CS with highly specificity for AcCoA. In addition to its CS function, ScCit1 plays a part in the construction of the TCA cycle metabolon. Yeast cells deleted for Cit1 are hyper-susceptible to apoptosis induced by heat and aging stress. ScCit2 is a peroxisomal CS involved in the glyoxylate cycle; in addition to having activity with AcCoA, it may have activity with PrCoA. Chicken and pig heart CS, two Arabidopsis thaliana (Ath) CSs, CSY4 and -5, and Aspergillus niger (An) CS also belong to this group. Ath CSY4 has a mitochondrial targeting sequence; AthCSY5 has no identifiable targeting sequence. AnCS encoded by the citA gene has both an N-terminal mitochondrial import signal and a C-terminal peroxisiomal target sequence; it is not known if both these signals are functional in vivo. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. Length = 427
>gnl|CDD|130853 TIGR01793, cit_synth_euk, citrate (Si)-synthase, eukaryotic Back     alignment and domain information
>gnl|CDD|99857 cd06103, ScCS-like, Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase Back     alignment and domain information
>gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|99859 cd06106, ScCit3_like, Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>gnl|CDD|215837 pfam00285, Citrate_synt, Citrate synthase Back     alignment and domain information
>gnl|CDD|99871 cd06118, citrate_synt_like_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|223449 COG0372, GltA, Citrate synthase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99853 cd06099, CS_ACL-C_CCL, Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>gnl|CDD|99863 cd06110, BSuCS-II_like, Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>gnl|CDD|99867 cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>gnl|CDD|130859 TIGR01800, cit_synth_II, 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>gnl|CDD|99865 cd06112, citrate_synt_like_1_1, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|180164 PRK05614, gltA, type II citrate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|237591 PRK14036, PRK14036, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|184468 PRK14035, PRK14035, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99864 cd06111, DsCS_like, Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>gnl|CDD|99866 cd06113, citrate_synt_like_1_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|184467 PRK14034, PRK14034, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184465 PRK14032, PRK14032, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237069 PRK12349, PRK12349, citrate synthase 3; Provisional Back     alignment and domain information
>gnl|CDD|237590 PRK14033, PRK14033, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99868 cd06115, AthCS_per_like, Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>gnl|CDD|99869 cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>gnl|CDD|233579 TIGR01798, cit_synth_I, citrate synthase I (hexameric type) Back     alignment and domain information
>gnl|CDD|99861 cd06108, Ec2MCS_like, Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>gnl|CDD|99870 cd06117, Ec2MCS_like_1, Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>gnl|CDD|183463 PRK12351, PRK12351, methylcitrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184470 PRK14037, PRK14037, citrate synthase; Provisional Back     alignment and domain information
>gnl|CDD|99862 cd06109, BsCS-I_like, Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>gnl|CDD|237070 PRK12350, PRK12350, citrate synthase 2; Provisional Back     alignment and domain information
>gnl|CDD|99856 cd06102, citrate_synt_like_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>gnl|CDD|99855 cd06101, citrate_synt, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 402
TIGR01793427 cit_synth_euk citrate (Si)-synthase, eukaryotic. T 100.0
KOG2617458 consensus Citrate synthase [Energy production and 100.0
cd06105427 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrat 100.0
PRK09569437 type I citrate synthase; Reviewed 100.0
cd06106428 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methyl 100.0
cd06103426 ScCS-like Saccharomyces cerevisiae (Sc) citrate sy 100.0
PLN02456455 citrate synthase 100.0
cd06115410 AthCS_per_like Arabidopsis thaliana (Ath) peroxiso 100.0
cd06107382 EcCS_AthCS-per_like Escherichia coli (Ec) citrate 100.0
cd06116384 CaCS_like Chloroflexus aurantiacus (Ca) citrate sy 100.0
cd06109349 BsCS-I_like Bacillus subtilis (Bs) citrate synthas 100.0
PRK12351378 methylcitrate synthase; Provisional 100.0
COG0372390 GltA Citrate synthase [Energy production and conve 100.0
PRK14036377 citrate synthase; Provisional 100.0
TIGR01798412 cit_synth_I citrate synthase I (hexameric type). T 100.0
cd06117366 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2- 100.0
cd06108363 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate 100.0
PRK14032447 citrate synthase; Provisional 100.0
cd06112373 citrate_synt_like_1_1 Citrate synthase (CS) cataly 100.0
PRK05614419 gltA type II citrate synthase; Reviewed 100.0
PRK14035371 citrate synthase; Provisional 100.0
cd06113406 citrate_synt_like_1_2 Citrate synthase (CS) cataly 100.0
PRK14034372 citrate synthase; Provisional 100.0
PRK14037377 citrate synthase; Provisional 100.0
cd06114400 EcCS_like Escherichia coli (Ec) citrate synthase ( 100.0
PF00285356 Citrate_synt: Citrate synthase; InterPro: IPR00202 100.0
cd06111362 DsCS_like Cold-active citrate synthase (CS) from a 100.0
PRK12349369 citrate synthase 3; Provisional 100.0
cd06118358 citrate_synt_like_1 Citrate synthase (CS) catalyze 100.0
TIGR01800368 cit_synth_II 2-methylcitrate synthase/citrate synt 100.0
cd06110356 BSuCS-II_like Bacillus subtilis (Bs) citrate synth 100.0
PRK14033375 citrate synthase; Provisional 100.0
PRK12350353 citrate synthase 2; Provisional 100.0
cd06101265 citrate_synt Citrate synthase (CS) catalyzes the c 100.0
cd06102282 citrate_synt_like_2 Citrate synthase (CS) catalyze 100.0
PRK06224263 citrate synthase; Provisional 100.0
cd06099213 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya 100.0
cd06100227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 100.0
PLN02522608 ATP citrate (pro-S)-lyase 100.0
KOG1254600 consensus ATP-citrate lyase [Energy production and 98.75
cd06100227 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal p 97.89
KOG2617458 consensus Citrate synthase [Energy production and 95.07
cd06099213 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lya 87.8
PRK14037377 citrate synthase; Provisional 83.15
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic Back     alignment and domain information 
Probab=100.00  E-value=4.1e-106  Score=822.63  Aligned_cols=365  Identities=78%  Similarity=1.272  Sum_probs=353.1

Q ss_pred             hhHHHHHHhHCHHHHHHHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCceecCCCHHHHhhhCCCCCC
Q 015697           38 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP  117 (402)
Q Consensus        38 ~~lk~~~~~~ip~~~~~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~  117 (402)
                      ++||++++++||.+++++|+||++||+++||++||+|+++||||+++++|+||+|||++||+||||+|+||++.+|++.+
T Consensus         2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~   81 (427)
T TIGR01793         2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG   81 (427)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999987777778


Q ss_pred             CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccC
Q 015697          118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH  197 (402)
Q Consensus       118 ~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~  197 (402)
                      ++++.||||+||||||+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|++++.|+++|+.+.+
T Consensus        82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~  161 (427)
T TIGR01793        82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH  161 (427)
T ss_pred             cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             CCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHhhCCCChHHHHHHHHHHHHhccCCCCCCh
Q 015697          198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS  277 (402)
Q Consensus       198 k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~Lil~aDHeg~n~S  277 (402)
                      +.++|++.++++++|||++|+|+|++||+.+++|+.++|++++||++||++||+++++.++++||++|||||||||+|+|
T Consensus       162 ~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~i~p~~~l~~a~Nfl~Ml~~~~~~~~~~l~~~LiLhADHeg~NaS  241 (427)
T TIGR01793       162 KTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQSISIDDSKDYSANFAHMLGYDSPSFQELMRLYLTIHSDHEGGNVS  241 (427)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHhhhcccccccch
Confidence            88999999999999999999999999998776776789999999999999999999999999999999999999989999


Q ss_pred             hHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCC
Q 015697          278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLR  357 (402)
Q Consensus       278 t~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vyr  357 (402)
                      |||+||||||++|||+|++|||++|+||+||||||+|++||.++.+++|.+++++++++||++.+++|++||||||||||
T Consensus       242 TfaarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr  321 (427)
T TIGR01793       242 AHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLR  321 (427)
T ss_pred             hHHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence            99999999999999999999999999999999999999999999888887778999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 015697          358 KTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN  402 (402)
Q Consensus       358 ~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~l~~~~k~~n  402 (402)
                      .+|||+++|+++++++.+++++++++.++++++++++.+++|.||
T Consensus       322 ~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~  366 (427)
T TIGR01793       322 KTDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKN  366 (427)
T ss_pred             CCCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccC
Confidence            999999999999999989999999999999999999999999886

This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
>KOG2617 consensus Citrate synthase [Energy production and conversion] Back     alignment and domain information
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like Back     alignment and domain information
>PRK09569 type I citrate synthase; Reviewed Back     alignment and domain information
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like Back     alignment and domain information
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like Back     alignment and domain information
>PLN02456 citrate synthase Back     alignment and domain information
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like Back     alignment and domain information
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like Back     alignment and domain information
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like Back     alignment and domain information
>PRK12351 methylcitrate synthase; Provisional Back     alignment and domain information
>COG0372 GltA Citrate synthase [Energy production and conversion] Back     alignment and domain information
>PRK14036 citrate synthase; Provisional Back     alignment and domain information
>TIGR01798 cit_synth_I citrate synthase I (hexameric type) Back     alignment and domain information
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like Back     alignment and domain information
>PRK14032 citrate synthase; Provisional Back     alignment and domain information
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK05614 gltA type II citrate synthase; Reviewed Back     alignment and domain information
>PRK14035 citrate synthase; Provisional Back     alignment and domain information
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK14034 citrate synthase; Provisional Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like Back     alignment and domain information
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2 Back     alignment and domain information
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like Back     alignment and domain information
>PRK12349 citrate synthase 3; Provisional Back     alignment and domain information
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II Back     alignment and domain information
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like Back     alignment and domain information
>PRK14033 citrate synthase; Provisional Back     alignment and domain information
>PRK12350 citrate synthase 2; Provisional Back     alignment and domain information
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle) Back     alignment and domain information
>PRK06224 citrate synthase; Provisional Back     alignment and domain information
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>PLN02522 ATP citrate (pro-S)-lyase Back     alignment and domain information
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>KOG2617 consensus Citrate synthase [Energy production and conversion] Back     alignment and domain information
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL Back     alignment and domain information
>PRK14037 citrate synthase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
2cts_A437 Crystallographic Refinement And Atomic Models Of Tw 1e-129
4cts_A437 Crystal Structure Analysis And Molecular Model Of A 1e-128
6csc_A437 Chicken Citrate Synthase Complex With Trifluoroacet 1e-127
1amz_A435 Chicken Citrate Synthase Complex With Nitromethylde 1e-127
1csc_A433 Structure Of Ternary Complexes Of Citrate Synthase 1e-120
5csc_B429 Structure Of An Open Form Of Chicken Heart Citrate 1e-120
1vgp_A373 Crystal Structure Of An Isozyme Of Citrate Synthase 1e-24
3msu_A427 Crystal Structure Of Citrate Synthase From Francise 5e-23
2h12_A436 Structure Of Acetobacter Aceti Citrate Synthase Com 2e-21
1aj8_A371 Citrate Synthase From Pyrococcus Furiosus Length = 6e-20
1iom_A377 Crystal Structure Of Citrate Synthase From Thermus 7e-19
2ibp_A409 Crystal Structure Of Citrate Synthase From Pyrobacu 9e-19
2p2w_A367 Crystal Structure Of Citrate Synthase From Thermoto 2e-16
3o8j_A404 Crystal Structure Of 2-Methylcitrate Synthase (Prpc 3e-15
1a59_A378 Cold-Active Citrate Synthase Length = 378 7e-15
3l96_A426 Structural Determination Of The A50t:s279g:s280k:v2 8e-15
1o7x_A377 Citrate Synthase From Sulfolobus Solfataricus Lengt 2e-14
3tqg_A375 Structure Of The 2-Methylcitrate Synthase (Prpc) Fr 8e-14
2c6x_A363 Structure Of Bacillus Subtilis Citrate Synthase Len 9e-14
1k3p_A426 Three Dimensional Structure Analysis Of The Type Ii 2e-13
1nxe_A427 A Novel Nadh Allosteric Regulator Site Is Found On 2e-13
4e6y_A432 Type Ii Citrate Synthase From Vibrio Vulnificus Len 2e-13
1owb_A427 Three Dimensional Structure Analysis Of The Variant 4e-13
1vgm_A378 Crystal Structure Of An Isozyme Of Citrate Synthase 6e-10
2r26_A384 The Structure Of The Ternary Complex Of Carboxymeth 1e-08
2ifc_A385 The Structure Of The Binary Complex Of Oxalateaceta 2e-08
3hwk_A414 Crystal Structure Of Methylcitrate Synthase From My 6e-08
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two Different Forms Of Citrate Synthase At 2.7 And 1.7 Angstroms Resolution Length = 437 Back     alignment and structure 
Iteration: 1

 Score =  457 bits (1176), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 210/369 (56%), Positives = 277/369 (75%), Gaps = 1/369 (0%)
Query: 35  SADLDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDP 94
           ++  +L   L ++IP++Q R+K  + + G   +G ITVDM+ GGMRGM GL++ETS+LDP
Sbjct: 1   ASSTNLKDILADLIPKEQARIKTFRQQHGNTAVGQITVDMMYGGMRGMKGLVYETSVLDP 60
Query: 95  DEGIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATV 154
           DEGIRFRG SIPECQK+LP AK               TG++P++EQV  LSKE   RA +
Sbjct: 61  DEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 120
Query: 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIA 214
           P +V   +D  P   HPM+Q ++ + AL  +S F  AY +GIH++KYWE  YED ++LIA
Sbjct: 121 PSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIA 180
Query: 215 RVPVVAAYVYQRIYKDGKIIPKDDS-LDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEG 273
           ++P VAA +Y+ +Y++G  I   DS LD+  NF++MLG+ D +  ELMRLY+TIHSDHEG
Sbjct: 181 KLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEG 240
Query: 274 GNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQ 333
           GNVSAHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVL+W+  +  E G++V+ E+
Sbjct: 241 GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEK 300
Query: 334 LKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPI 393
           L+DY+W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +
Sbjct: 301 LRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNV 360
Query: 394 LTKLGKVSN 402
           L + GK  N
Sbjct: 361 LLEQGKAKN 369
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A Complex Of Citrate Synthase With Oxaloacetate And S-Acetonyl- Coenzyme A Length = 437 Back     alignment and structure
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With Trifluoroacetonyl-Coa And Citrate Length = 437 Back     alignment and structure
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa And Malate Length = 435 Back     alignment and structure
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D- And L-Malate: Mechanistic Implications Length = 433 Back     alignment and structure
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate Synthase At 2.8 Angstroms Resolution Length = 429 Back     alignment and structure
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From Sulfolbus Tokodaii Strain7 Length = 373 Back     alignment and structure
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella Tular Length = 427 Back     alignment and structure
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed With Oxaloacetate And Carboxymethyldethia Coenzyme A (Cmx) Length = 436 Back     alignment and structure
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus Length = 371 Back     alignment and structure
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus Thermophilus Hb8 Length = 377 Back     alignment and structure
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum Aerophilum Length = 409 Back     alignment and structure
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga Maritima Msb8 Length = 367 Back     alignment and structure
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From Salmonella Typhimurium Length = 404 Back     alignment and structure
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase Length = 378 Back     alignment and structure
>pdb|3L96|A Chain A, Structural Determination Of The A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate Synthase From E. Coli Length = 426 Back     alignment and structure
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus Length = 377 Back     alignment and structure
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From Coxiella Burnetii Length = 375 Back     alignment and structure
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase Length = 363 Back     alignment and structure
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii Citrate From E.Coli Length = 426 Back     alignment and structure
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The Surfa Hexameric Type Ii Phe383ala Variant Of Citrate Synthase Length = 427 Back     alignment and structure
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus Length = 432 Back     alignment and structure
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l Nadh Complex Of Type Ii Citrate Synthase From E. Coli Length = 427 Back     alignment and structure
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From Sulfolbus Tokodaii Strain7 Length = 378 Back     alignment and structure
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl Coenzyme A And Oxalateacetate With Citrate Synthase From The Thermophilic Archaeonthermoplasma Acidophilum Length = 384 Back     alignment and structure
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With Citrate Synthase From The Thermophilic Archaeon Thermolasma Acidophilum Length = 385 Back     alignment and structure
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From Mycobacterium Tuberculosis Length = 414 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 0.0
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 3e-49
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 3e-48
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 1e-47
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 1e-47
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 5e-47
2p2w_A367 Citrate synthase; transferase, structural genomics 6e-47
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 7e-47
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 7e-47
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 5e-46
1vgm_A378 378AA long hypothetical citrate synthase; open for 1e-45
1iom_A377 Citrate synthase; open form, riken structural geno 1e-45
1vgp_A373 373AA long hypothetical citrate synthase; open for 9e-45
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 1e-44
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 5e-44
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 5e-44
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 3e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Length = 435 Back     alignment and structure
 Score =  563 bits (1453), Expect = 0.0
 Identities = 217/365 (59%), Positives = 280/365 (76%), Gaps = 1/365 (0%)

Query: 39  DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI 98
           +L   L  +IP++Q R+K  + + G   +G ITVDM  GGMRGM GL++ETS+LDPDEGI
Sbjct: 3   NLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGI 62

Query: 99  RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYV 158
           RFRG SIPECQKLLP A    EPLPEGL WLL+TG++P+ EQV  +SKE   RA +P +V
Sbjct: 63  RFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHV 122

Query: 159 YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPV 218
              +D  P   HPM+Q ++ + AL  +S F  AY +GI+++KYWE  YED+++LIA++P 
Sbjct: 123 VTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPC 182

Query: 219 VAAYVYQRIYKDGK-IIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277
           VAA +Y+ +Y+ G  I   D  LD+  NF++MLG+ DP+  ELMRLY+TIHSDHEGGNVS
Sbjct: 183 VAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVS 242

Query: 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDY 337
           AHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVLLW+  +  + G + + E+L+DY
Sbjct: 243 AHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDY 302

Query: 338 VWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKL 397
           +W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L + 
Sbjct: 303 IWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQ 362

Query: 398 GKVSN 402
           GK  N
Sbjct: 363 GKAKN 367
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Length = 378 Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Length = 363 Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Length = 385 Back     alignment and structure
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Length = 414 Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} Length = 375 Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Length = 367 Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Length = 377 Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Length = 404 Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Length = 371 Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Length = 378 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Length = 377 Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Length = 373 Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Length = 409 Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Length = 427 Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Length = 436 Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Length = 426 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
1csh_A435 Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A 100.0
3hwk_A414 Methylcitrate synthase; niaid, ssgcid, structural 100.0
2ibp_A409 Citrate synthase; disulfide bond, homodimer, therm 100.0
3msu_A427 Citrate synthase; helix bundle, APHA-beta fold, cs 100.0
3tqg_A375 2-methylcitrate synthase; energy metabolism, trans 100.0
2h12_A436 Citrate synthase; acidophIle, acetic acid resistan 100.0
3o8j_A404 2-methylcitrate synthase; short chain fatty acids, 100.0
3l96_A426 Citrate synthase; quaternary, hexamer, GRAM-negati 100.0
2p2w_A367 Citrate synthase; transferase, structural genomics 100.0
1a59_A378 Citrate synthase; cold-activity; HET: COA CIT; 2.0 100.0
2c6x_A363 Citrate synthase 1; tricarboxylic acid cycle, tran 100.0
2ifc_A385 Citrate synthase; oxaloacetate, EC 2.3.3.1, transf 100.0
1vgm_A378 378AA long hypothetical citrate synthase; open for 100.0
1o7x_A377 Citrate synthase; lyase, tricarboxylic acid cycle; 100.0
1iom_A377 Citrate synthase; open form, riken structural geno 100.0
1aj8_A371 Citrate synthase; hyperthermostable, lyase; HET: C 100.0
1vgp_A373 373AA long hypothetical citrate synthase; open for 100.0
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B Back     alignment and structure
Probab=100.00  E-value=5e-101  Score=788.67  Aligned_cols=365  Identities=59%  Similarity=1.071  Sum_probs=350.8

Q ss_pred             hhHHHHHHhHCHHHHHHHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCceecCCCHHHHhhhCCCCCC
Q 015697           38 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP  117 (402)
Q Consensus        38 ~~lk~~~~~~ip~~~~~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~  117 (402)
                      ++||++++++||.+++.+|+|+++||+++||++|+|++++||+|+++++|+||+|||++||+||||+|+||++++|+.++
T Consensus         2 ~~lk~~~~~~i~~~~~~~~~~~~~~g~~~~~~~t~~~~~~Gl~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~~~~~~~~   81 (435)
T 1csh_A            2 TNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGG   81 (435)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccCcCCCeeeeeeeeEEcCCCCeeECCccHHHHHhhCccccc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999998777


Q ss_pred             CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccC
Q 015697          118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH  197 (402)
Q Consensus       118 ~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~  197 (402)
                      +.+++||||+||||+|+|||++|+++|+++|..++.+|+++.++|++||+++|||++|+++|++|+++++|+++|+++.+
T Consensus        82 ~~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~  161 (435)
T 1csh_A           82 GEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIN  161 (435)
T ss_dssp             CCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCC
T ss_pred             CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCC
Confidence            87889999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             CCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCC-cccCCCCCCCHHHHHHHhhCCCChHHHHHHHHHHHHhccCCCCCC
Q 015697          198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG-KIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNV  276 (402)
Q Consensus       198 k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~-~~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~Lil~aDHeg~n~  276 (402)
                      +.++|++.++++++|||++|+|+|++||++++++ .+++|++++||++||++||+++++.++++||++|||||||||+|+
T Consensus       162 ~~~~~~~~~~~a~~LiAk~p~iaa~~yr~~~~~~~~~i~p~~~ls~a~nfl~ml~~p~~~~~~~ld~~LiLhADHeg~N~  241 (435)
T 1csh_A          162 RTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNV  241 (435)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHccCCCCCch
Confidence            6778999999999999999999999999998765 578999999999999999999999999999999999999977999


Q ss_pred             hhHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC
Q 015697          277 SAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL  356 (402)
Q Consensus       277 St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vy  356 (402)
                      ||||+|+++||++|+|+|++|||++|+||+||||||+|++||.++.++||++.+++++++||++.+++|++|||||||||
T Consensus       242 STftaRvvaSt~ad~ysavaagi~aL~GplHGGAne~v~~ml~~i~~~ig~~~~~~~~~~~v~~~l~~g~~i~GfGHrVy  321 (435)
T 1csh_A          242 SAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVL  321 (435)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhccCCcccChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCceecCCcccc
Confidence            99999999999999999999999999999999999999999999988899766789999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 015697          357 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN  402 (402)
Q Consensus       357 r~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~l~~~~k~~n  402 (402)
                      |++|||+++|+++++++.+++|+++++.+||++++++|.+++|.||
T Consensus       322 k~~DPRa~~L~~~a~~l~~~~~~~~~a~~le~~a~~~l~~~~~~k~  367 (435)
T 1csh_A          322 RKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKN  367 (435)
T ss_dssp             CSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999988899999999999999999999888776
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum} Back     alignment and structure
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis} Back     alignment and structure
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0 Back     alignment and structure
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Back     alignment and structure
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica} Back     alignment and structure
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A Back     alignment and structure
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} Back     alignment and structure
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1 Back     alignment and structure
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} Back     alignment and structure
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A* Back     alignment and structure
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1 Back     alignment and structure
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A* Back     alignment and structure
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1 Back     alignment and structure
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 402
d1csha_435 a.103.1.1 (A:) Citrate synthase {Chicken (Gallus g 1e-108
d1ioma_374 a.103.1.1 (A:) Citrate synthase {Thermus thermophi 9e-43
d1k3pa_426 a.103.1.1 (A:) Citrate synthase {Escherichia coli 8e-42
d1o7xa_367 a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolob 2e-40
d1aj8a_371 a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococc 8e-36
d1a59a_377 a.103.1.1 (A:) Citrate synthase {Antarctic bacteri 9e-35
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 435 Back     information, alignment and structure

class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  322 bits (827), Expect = e-108
 Identities = 217/365 (59%), Positives = 280/365 (76%), Gaps = 1/365 (0%)

Query: 39  DLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI 98
           +L   L  +IP++Q R+K  + + G   +G ITVDM  GGMRGM GL++ETS+LDPDEGI
Sbjct: 3   NLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGI 62

Query: 99  RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYV 158
           RFRG SIPECQKLLP A    EPLPEGL WLL+TG++P+ EQV  +SKE   RA +P +V
Sbjct: 63  RFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHV 122

Query: 159 YKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPV 218
              +D  P   HPM+Q ++ + AL  +S F  AY +GI+++KYWE  YED+++LIA++P 
Sbjct: 123 VTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPC 182

Query: 219 VAAYVYQRIYKDGKIIPK-DDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVS 277
           VAA +Y+ +Y+ G  I   D  LD+  NF++MLG+ DP+  ELMRLY+TIHSDHEGGNVS
Sbjct: 183 VAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVS 242

Query: 278 AHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDY 337
           AHT HLV SALSDPYLSFAAA+NGLAGPLHGLANQEVLLW+  +  + G + + E+L+DY
Sbjct: 243 AHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDY 302

Query: 338 VWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKL 397
           +W TLNSG+VVPG+GH VLRKTDPRYTCQREFALKHLP DP+F+LV++L+++VP +L + 
Sbjct: 303 IWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQ 362

Query: 398 GKVSN 402
           GK  N
Sbjct: 363 GKAKN 367
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Length = 374 Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Length = 426 Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 367 Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 371 Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Length = 377 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
d1csha_435 Citrate synthase {Chicken (Gallus gallus) [TaxId: 100.0
d1ioma_374 Citrate synthase {Thermus thermophilus [TaxId: 274 100.0
d1o7xa_367 Citrate synthase {Archaeon Sulfolobus solfataricus 100.0
d1k3pa_426 Citrate synthase {Escherichia coli [TaxId: 562]} 100.0
d1a59a_377 Citrate synthase {Antarctic bacterium DS2-3R [TaxI 100.0
d1aj8a_371 Citrate synthase {Archaeon Pyrococcus furiosus [Ta 100.0
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Citrate synthase
superfamily: Citrate synthase
family: Citrate synthase
domain: Citrate synthase
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.2e-102  Score=799.94  Aligned_cols=365  Identities=59%  Similarity=1.071  Sum_probs=353.9

Q ss_pred             hhHHHHHHhHCHHHHHHHHHHHHhhCCccccceehhcccccccccccceeecceecCCCCceecCCCHHHHhhhCCCCCC
Q 015697           38 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP  117 (402)
Q Consensus        38 ~~lk~~~~~~ip~~~~~~k~l~~~~g~~~ig~~tv~~~~~Glrgv~~~~t~iS~iD~~~Gi~yRGy~I~eL~~~~p~~~~  117 (402)
                      ++||++|+++||++++.+|+||++||++++|++|+||+++||||+++++|+||+|||++||+||||+|+||++.+||..+
T Consensus         2 ~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~it~d~~~~Glrg~~~~~t~iS~iDg~~Gi~YRGy~I~eL~~~l~k~~~   81 (435)
T d1csha_           2 TNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGG   81 (435)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeecccccccCCCceeEEeceeEcCccceeECCccHHHHHHHhhcccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhhccchhhHHhhhccC
Q 015697          118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH  197 (402)
Q Consensus       118 ~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~av~aL~~~s~f~~~y~~~~~  197 (402)
                      +++++||||+||||||+|||++|+++|+++|.+++.+|+++.++|++||+++|||++|+++|++|++++++...|.++.+
T Consensus        82 ~e~~~fEEV~yLLl~GeLPt~~EL~~f~~~L~~~~~lp~~v~~~i~~~P~~~hPM~~L~~~vsaL~~~~~~~~~~~~~~~  161 (435)
T d1csha_          82 GEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIN  161 (435)
T ss_dssp             CCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCC
T ss_pred             cccCcHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhcCCccHHHHHHHHHHHhhccCccchhhccccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCCCCCchHHHHHHHHHhhhHHHHHHHHHHhcCCc-ccCCCCCCCHHHHHHHhhCCCChHHHHHHHHHHHHhccCCCCCC
Q 015697          198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK-IIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNV  276 (402)
Q Consensus       198 k~~~~~~~~e~a~~LiAklp~iaa~iyr~~~~~~~-~~~p~~~l~~~~nf~~ml~~~~~~~~~~l~~~Lil~aDHeg~n~  276 (402)
                      +.++|++.++++++|||++|+|+|++||+.++.|. +++||+++||++||++||++++|.+.++||++|||||||||+|+
T Consensus       162 ~~~~~e~~~~~a~~LiAk~P~i~A~~yr~~~~~g~~~~~pd~~ls~a~nfl~ml~~~~p~~~~~l~~~lil~aDHeg~n~  241 (435)
T d1csha_         162 RTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNV  241 (435)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSH
T ss_pred             ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCCCCCCCcCHHHHHHHHhcCccHHHHHHHHHHHHHHhhccCCcc
Confidence            88899999999999999999999999998766664 67899999999999999999999999999999999999998999


Q ss_pred             hhHHHHHHhccCCChHHHHHHHhhcccCCccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC
Q 015697          277 SAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL  356 (402)
Q Consensus       277 St~aarvvaSt~sd~y~avaAgi~aL~GplHGgAne~v~~~l~~i~~~ig~~~s~~~~~~~v~~~l~~g~~IpGfGH~Vy  356 (402)
                      ||||+|+|+||++|+|+|++||+++|+||+||||||+|++||.++.+.++.+.+++++++||++.+++|++|||||||||
T Consensus       242 St~a~rvvaSt~sd~~sav~agi~al~GplHGGA~~~v~~~l~~i~~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGH~vy  321 (435)
T d1csha_         242 SAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVL  321 (435)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSC
T ss_pred             hHHHHHHHhccccchHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCcccccCcccc
Confidence            99999999999999999999999999999999999999999999998887777899999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHhcCCCCC
Q 015697          357 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVSN  402 (402)
Q Consensus       357 r~~DPRa~~l~~~a~~~~~~d~~~~la~~le~~~~~~l~~~~k~~n  402 (402)
                      |..|||+++|+++++++++++|+++++.++++++++++.+++|.||
T Consensus       322 k~~DPRa~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~k~  367 (435)
T d1csha_         322 RKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKN  367 (435)
T ss_dssp             CSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             cCCCcchHHHHHHHHHHcccCchhHHHHHHHHHHHHHHHHhcccCC
Confidence            9999999999999999999999999999999999999999999886
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Back     information, alignment and structure
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure