Citrus Sinensis ID: 015701
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | 2.2.26 [Sep-21-2011] | |||||||
| B8FBS0 | 450 | UDP-N-acetylmuramoylalani | yes | no | 0.865 | 0.773 | 0.325 | 2e-40 | |
| Q6AJ52 | 456 | UDP-N-acetylmuramoylalani | yes | no | 0.878 | 0.774 | 0.327 | 4e-40 | |
| Q2IG29 | 462 | UDP-N-acetylmuramoylalani | yes | no | 0.880 | 0.766 | 0.318 | 6e-40 | |
| A8ZXW5 | 459 | UDP-N-acetylmuramoylalani | yes | no | 0.858 | 0.751 | 0.331 | 1e-38 | |
| Q5X1S4 | 447 | UDP-N-acetylmuramoylalani | yes | no | 0.825 | 0.742 | 0.296 | 2e-38 | |
| Q1IKG8 | 453 | UDP-N-acetylmuramoylalani | yes | no | 0.870 | 0.772 | 0.297 | 3e-38 | |
| Q7V0A5 | 473 | UDP-N-acetylmuramoylalani | yes | no | 0.885 | 0.752 | 0.295 | 3e-38 | |
| Q5ZSA3 | 447 | UDP-N-acetylmuramoylalani | yes | no | 0.825 | 0.742 | 0.293 | 7e-38 | |
| Q5WTI5 | 447 | UDP-N-acetylmuramoylalani | yes | no | 0.825 | 0.742 | 0.293 | 1e-37 | |
| Q8R9G4 | 450 | UDP-N-acetylmuramoylalani | yes | no | 0.833 | 0.744 | 0.330 | 1e-36 |
| >sp|B8FBS0|MURD_DESAA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murD PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 200/387 (51%), Gaps = 39/387 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L + G V+ E++ A++ I I+AVTGTNGK+TV + +G+M+ GI AFVGGN
Sbjct: 85 LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+GNPL + + K QV V E+SS+Q++ + F P V+++ N+T DH++R+
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M+ YA +K +F + +L G + A+ G W F G + + EA A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250
Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A+ + Q H M + G HN NAA AAL+ VE + I+
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
+ PHR++ V R++ V + DDSKATN++A L L+G + L ++ G++
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHL-----IMGGRDK 358
Query: 312 NG-FEKLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
G F L + + R +T +G++ T +G S+ ++ AV A+R A
Sbjct: 359 GGHFRDLKDMVEQKAARLYVTGEAAGII---TSALSG-SVEVVQAGTIEKAVEFAKRAAR 414
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVF 395
G+ +VLSPGCASFD+++N++ RG F
Sbjct: 415 PGEVVVLSPGCASFDQYKNYKERGKDF 441
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Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Desulfatibacillum alkenivorans (strain AK-01) (taxid: 439235) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 9 |
| >sp|Q6AJ52|MURD_DESPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=murD PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q2IG29|MURD_ANADE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=murD PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|A8ZXW5|MURD_DESOH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=murD PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5X1S4|MURD_LEGPA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Paris) GN=murD PE=3 SV=1 | Back alignment and function description |
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| >sp|Q1IKG8|MURD_KORVE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter versatilis (strain Ellin345) GN=murD PE=3 SV=1 | Back alignment and function description |
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| >sp|Q7V0A5|MURD_PROMP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=murD PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5ZSA3|MURD_LEGPH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=murD PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5WTI5|MURD_LEGPL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Lens) GN=murD PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8R9G4|MURD_THETN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=murD PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | ||||||
| 297739715 | 479 | unnamed protein product [Vitis vinifera] | 0.970 | 0.814 | 0.739 | 1e-171 | |
| 147779061 | 806 | hypothetical protein VITISV_002512 [Viti | 0.763 | 0.380 | 0.653 | 1e-124 | |
| 302753318 | 492 | hypothetical protein SELMODRAFT_229823 [ | 0.942 | 0.770 | 0.510 | 1e-108 | |
| 302804608 | 492 | hypothetical protein SELMODRAFT_119501 [ | 0.942 | 0.770 | 0.505 | 1e-108 | |
| 302804600 | 492 | hypothetical protein SELMODRAFT_119124 [ | 0.942 | 0.770 | 0.515 | 1e-105 | |
| 168039117 | 521 | predicted protein [Physcomitrella patens | 0.947 | 0.731 | 0.502 | 1e-104 | |
| 225454866 | 307 | PREDICTED: UDP-N-acetylmuramoylalanine-- | 0.733 | 0.960 | 0.520 | 6e-97 | |
| 147774763 | 926 | hypothetical protein VITISV_028258 [Viti | 0.679 | 0.294 | 0.522 | 9e-97 | |
| 303273586 | 647 | predicted protein [Micromonas pusilla CC | 0.912 | 0.567 | 0.351 | 2e-53 | |
| 253997371 | 452 | UDP-N-acetylmuramoylalanine--D-glutamate | 0.835 | 0.743 | 0.317 | 6e-44 |
| >gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 290/392 (73%), Positives = 336/392 (85%), Gaps = 2/392 (0%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L++ GL+ LLQSGKRV+SELDFAA+++PRSIKILAVTGTNGKSTV TF GQML+HLGIE
Sbjct: 87 LESHGLSFLLQSGKRVLSELDFAAEILPRSIKILAVTGTNGKSTVATFSGQMLSHLGIEV 146
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
FVGGNLG PLSEAA C+ PS KP FQVAVVEVSSYQ+E+PNK+FCP+V+VVLNLT DH
Sbjct: 147 FVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVAVVLNLTSDH 206
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKI 190
LERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++ + NLAWIGAFPGVK+
Sbjct: 207 LERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAWIGAFPGVKV 266
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
D E K AS VPA+GVVS+L+L + VMG HNY+NAAVAALSVLGLD+G+D EA++STIE
Sbjct: 267 DKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIE 326
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
LR PPHRMQIVH+D GVTW+DDSKATN+EAT TGL+ LK K VILLGG AKV N QE
Sbjct: 327 KLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSVILLGGLAKVSNSQE 386
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
SNGFE+L+EPL +HRCVITFG+SG LI KTL ++GLSIPCF AN++DAVN AR +A G
Sbjct: 387 SNGFEQLVEPLKYHRCVITFGFSGPLIQKTLSDDGLSIPCFEAANLEDAVNCARSVARYG 446
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 402
DA+VLSPGCASFDEFRNFEHRG VFQEL FS+
Sbjct: 447 DAVVLSPGCASFDEFRNFEHRGKVFQELVFSS 478
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii] gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii] | Back alignment and taxonomy information |
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| >gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii] gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii] | Back alignment and taxonomy information |
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| >gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii] gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii] | Back alignment and taxonomy information |
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| >gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens] gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella patens] gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
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| >gi|225454866|ref|XP_002275450.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147774763|emb|CAN60280.1| hypothetical protein VITISV_028258 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|303273586|ref|XP_003056153.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462237|gb|EEH59529.1| predicted protein [Micromonas pusilla CCMP1545] | Back alignment and taxonomy information |
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| >gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylotenera mobilis JLW8] gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera mobilis JLW8] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 402 | ||||||
| TIGR_CMR|CHY_2071 | 451 | CHY_2071 "UDP-N-acetylmuramoyl | 0.935 | 0.833 | 0.292 | 5.5e-38 | |
| TIGR_CMR|CPS_4467 | 471 | CPS_4467 "UDP-N-acetylmuramoyl | 0.900 | 0.768 | 0.291 | 8.5e-33 | |
| TIGR_CMR|SO_4221 | 439 | SO_4221 "UDP-N-acetylmuramoyla | 0.427 | 0.391 | 0.333 | 6e-31 | |
| TIGR_CMR|GSU_3071 | 452 | GSU_3071 "UDP-N-acetylmuramoyl | 0.320 | 0.285 | 0.366 | 4.9e-30 | |
| UNIPROTKB|Q9KPG5 | 440 | murD "UDP-N-acetylmuramoylalan | 0.420 | 0.384 | 0.319 | 3.5e-28 | |
| TIGR_CMR|VC_2403 | 440 | VC_2403 "UDP-N-acetylmuramoyla | 0.420 | 0.384 | 0.319 | 3.5e-28 | |
| TIGR_CMR|SPO_1187 | 466 | SPO_1187 "UDP-N-acetylmuramoyl | 0.400 | 0.345 | 0.333 | 1.7e-21 | |
| TIGR_CMR|BA_4051 | 450 | BA_4051 "UDP-N-acetylmuramoyla | 0.699 | 0.624 | 0.280 | 2.2e-21 | |
| TIGR_CMR|CJE_0482 | 402 | CJE_0482 "UDP-N-acetylmuramoyl | 0.340 | 0.340 | 0.309 | 2.9e-21 | |
| UNIPROTKB|Q97RU8 | 450 | murD "UDP-N-acetylmuramoylalan | 0.651 | 0.582 | 0.298 | 4e-21 |
| TIGR_CMR|CHY_2071 CHY_2071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 118/403 (29%), Positives = 201/403 (49%)
Query: 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
W L + L +A L+ G V+ E++ A + + I+AVTGTNGK+T +++
Sbjct: 69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
G++L G + + GN+G PL EA + ++ +EVSS+Q+E K F P
Sbjct: 127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
V+V+LNLTPDHL+RHKT++ Y K +F + T + +L + + + + + +
Sbjct: 177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236
Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
++ K V ++GV ++ + N+ + G HN NA +A ++ GV
Sbjct: 237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENA-LATVAACW-SFGV 294
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
+ + + + HR++ V +I GV +V+DSK TN ++T L + V++ G
Sbjct: 295 SGKNIERGLRNFQGVAHRLEKV-AEINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVA-NMKD 358
G+ K N F +L + R I G + + L G + VA + +D
Sbjct: 353 GRNK------GNSFGELAREIREKVRFTILVGECREELKEALEMVGYDK--YVVAESFED 404
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 401
AV A+ +A GD ++LSP AS+D F+N+E RG +F+ L +
Sbjct: 405 AVKKAKELARPGDVVLLSPAAASWDMFKNYEERGELFKRLVLN 447
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| TIGR_CMR|CPS_4467 CPS_4467 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SO_4221 SO_4221 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_3071 GSU_3071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KPG5 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_2403 VC_2403 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SPO_1187 SPO_1187 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|BA_4051 BA_4051 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CJE_0482 CJE_0482 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q97RU8 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Streptococcus pneumoniae TIGR4 (taxid:170187)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2.9 | 0.737 |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 402 | |||
| COG0771 | 448 | COG0771, MurD, UDP-N-acetylmuramoylalanine-D-gluta | 3e-84 | |
| TIGR01087 | 433 | TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-gl | 1e-80 | |
| PRK03803 | 448 | PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 8e-62 | |
| PRK14106 | 450 | PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 2e-58 | |
| PRK02472 | 447 | PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 3e-57 | |
| PRK02006 | 498 | PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 1e-56 | |
| PRK02705 | 459 | PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 2e-55 | |
| PRK01710 | 458 | PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 7e-48 | |
| PRK01390 | 460 | PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 3e-47 | |
| PRK03806 | 438 | PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 1e-43 | |
| PRK03815 | 401 | PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 3e-41 | |
| PRK04308 | 445 | PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 1e-40 | |
| PRK01438 | 480 | PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 7e-40 | |
| PRK01368 | 454 | PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 8e-38 | |
| PRK04663 | 438 | PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 6e-37 | |
| PRK00683 | 418 | PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 1e-36 | |
| PRK04690 | 468 | PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 7e-34 | |
| PRK00141 | 473 | PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 2e-32 | |
| pfam08245 | 178 | pfam08245, Mur_ligase_M, Mur ligase middle domain | 6e-28 | |
| PRK03369 | 488 | PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 5e-24 | |
| COG0770 | 451 | COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy | 1e-20 | |
| PRK00139 | 460 | PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-gluta | 2e-20 | |
| TIGR01085 | 464 | TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide sy | 4e-20 | |
| COG0769 | 475 | COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt | 1e-18 | |
| TIGR01143 | 417 | TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide-- | 8e-18 | |
| PRK11929 | 958 | PRK11929, PRK11929, putative bifunctional UDP-N-ac | 1e-15 | |
| PRK11929 | 958 | PRK11929, PRK11929, putative bifunctional UDP-N-ac | 3e-13 | |
| TIGR01081 | 448 | TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamm | 3e-09 | |
| COG0773 | 459 | COG0773, MurC, UDP-N-acetylmuramate-alanine ligase | 4e-09 | |
| PRK14022 | 481 | PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-g | 2e-08 | |
| TIGR01082 | 448 | TIGR01082, murC, UDP-N-acetylmuramate--alanine lig | 9e-08 | |
| PRK00421 | 461 | PRK00421, murC, UDP-N-acetylmuramate--L-alanine li | 2e-05 | |
| PRK14573 | 809 | PRK14573, PRK14573, bifunctional D-alanyl-alanine | 1e-04 | |
| PRK11930 | 822 | PRK11930, PRK11930, putative bifunctional UDP-N-ac | 5e-04 |
| >gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 263 bits (675), Expect = 3e-84
Identities = 110/387 (28%), Positives = 180/387 (46%), Gaps = 42/387 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+G ++ +++ ++ + I+A+TGTNGK+T + + +L G++A +GGN+G P
Sbjct: 90 KAAGIEIIGDIELFYRLSGEA-PIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMK 140
E V V+E+SS+Q+E + P ++V+LN++ DHL+RH +M+
Sbjct: 149 ALELL-------EQAEPADVYVLELSSFQLETTSS--LRPEIAVILNISEDHLDRHGSME 199
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFP----GVKIDTEAK 195
NYA K + T++ ++ + A + + + W G I
Sbjct: 200 NYAAAKLRILEGQ--TEVAVINADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL 257
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
E +K+ G HN N AA+A LG+ +EAL+S
Sbjct: 258 VFKGEKLLPAD-------ELKLPGAHNLENALAALALARALGVPPEAILEALSS----FT 306
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHR++ V + GV +++DSKATN++AT L G +++ GG K
Sbjct: 307 GLPHRLEFV-GEKDGVLFINDSKATNVDATLAALSGFDG-PVILIAGGDDK------GAD 358
Query: 314 FEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 372
F L E L + ++ G I L +++AV AR +A GD
Sbjct: 359 FSPLAEILAKVIKKLVLIGEDAEKIAAAL--KEAGPSLVICETLEEAVQLARELAQPGDV 416
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQELA 399
++LSP CASFD+F+NFE RG F+EL
Sbjct: 417 VLLSPACASFDQFKNFEERGEEFKELV 443
|
Length = 448 |
| >gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
| >gnl|CDD|235160 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234995 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235162 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179086 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234662 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219763 pfam08245, Mur_ligase_M, Mur ligase middle domain | Back alignment and domain information |
|---|
| >gnl|CDD|179571 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|234660 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Back alignment and domain information |
|---|
| >gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130153 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase | Back alignment and domain information |
|---|
| >gnl|CDD|223844 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|237588 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233264 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
| >gnl|CDD|234757 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237026 PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 100.0 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 100.0 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| COG0773 | 459 | MurC UDP-N-acetylmuramate-alanine ligase [Cell env | 100.0 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 100.0 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 100.0 | |
| PRK10773 | 453 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a | 100.0 | |
| TIGR01081 | 448 | mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl | 100.0 | |
| TIGR01143 | 417 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a | 100.0 | |
| PRK14093 | 479 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop | 100.0 | |
| COG0770 | 451 | MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce | 100.0 | |
| PRK11929 | 958 | putative bifunctional UDP-N-acetylmuramoylalanyl-D | 100.0 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 100.0 | |
| PRK00139 | 460 | murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d | 100.0 | |
| TIGR01085 | 464 | murE UDP-N-acetylmuramyl-tripeptide synthetase. A | 100.0 | |
| PRK11930 | 822 | putative bifunctional UDP-N-acetylmuramoyl-tripept | 100.0 | |
| PRK14022 | 481 | UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l | 100.0 | |
| PRK11929 | 958 | putative bifunctional UDP-N-acetylmuramoylalanyl-D | 100.0 | |
| TIGR01499 | 397 | folC folylpolyglutamate synthase/dihydrofolate syn | 100.0 | |
| COG0769 | 475 | MurE UDP-N-acetylmuramyl tripeptide synthase [Cell | 100.0 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 100.0 | |
| COG0285 | 427 | FolC Folylpolyglutamate synthase [Coenzyme metabol | 100.0 | |
| PRK10846 | 416 | bifunctional folylpolyglutamate synthase/ dihydrof | 100.0 | |
| PLN02913 | 510 | dihydrofolate synthetase | 100.0 | |
| PLN02881 | 530 | tetrahydrofolylpolyglutamate synthase | 100.0 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.98 | |
| PF08245 | 188 | Mur_ligase_M: Mur ligase middle domain; InterPro: | 99.97 | |
| KOG2525 | 496 | consensus Folylpolyglutamate synthase [Coenzyme tr | 99.97 | |
| PF02875 | 91 | Mur_ligase_C: Mur ligase family, glutamate ligase | 99.25 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 95.12 | |
| PF08353 | 113 | DUF1727: Domain of unknown function (DUF1727); Int | 93.08 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 93.06 | |
| PRK15453 | 290 | phosphoribulokinase; Provisional | 91.83 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 91.38 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 90.82 | |
| TIGR03172 | 232 | probable selenium-dependent hydroxylase accessory | 90.73 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 89.8 | |
| PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 89.29 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 89.1 | |
| PHA02519 | 387 | plasmid partition protein SopA; Reviewed | 88.96 | |
| PRK00652 | 325 | lpxK tetraacyldisaccharide 4'-kinase; Reviewed | 88.65 | |
| PRK13705 | 388 | plasmid-partitioning protein SopA; Provisional | 88.33 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 88.23 | |
| PRK13235 | 274 | nifH nitrogenase reductase; Reviewed | 87.97 | |
| PF00485 | 194 | PRK: Phosphoribulokinase / Uridine kinase family; | 87.83 | |
| COG2403 | 449 | Predicted GTPase [General function prediction only | 87.82 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 87.67 | |
| TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kin | 87.6 | |
| COG0132 | 223 | BioD Dethiobiotin synthetase [Coenzyme metabolism] | 87.32 | |
| PRK14494 | 229 | putative molybdopterin-guanine dinucleotide biosyn | 87.31 | |
| PRK13230 | 279 | nitrogenase reductase-like protein; Reviewed | 86.2 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 86.05 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 85.88 | |
| PRK10037 | 250 | cell division protein; Provisional | 85.74 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 85.68 | |
| TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. | 85.61 | |
| COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase | 85.31 | |
| PRK14495 | 452 | putative molybdopterin-guanine dinucleotide biosyn | 85.03 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t | 84.98 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 84.83 | |
| PF06564 | 243 | YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p | 84.82 | |
| cd02029 | 277 | PRK_like Phosphoribulokinase-like (PRK-like) is a | 84.79 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 84.67 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 84.47 | |
| PRK13234 | 295 | nifH nitrogenase reductase; Reviewed | 83.05 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 82.79 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 82.57 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 82.44 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 82.37 | |
| PRK13233 | 275 | nifH nitrogenase reductase; Reviewed | 82.2 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 81.99 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 81.97 | |
| COG4240 | 300 | Predicted kinase [General function prediction only | 81.42 | |
| COG1072 | 283 | CoaA Panthothenate kinase [Coenzyme metabolism] | 81.37 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 81.28 | |
| cd03109 | 134 | DTBS Dethiobiotin synthetase (DTBS) is the penulti | 81.28 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 81.16 | |
| PRK07667 | 193 | uridine kinase; Provisional | 80.98 | |
| cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_ | 80.91 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 80.81 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 80.51 | |
| PRK06696 | 223 | uridine kinase; Validated | 80.4 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 80.12 |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-66 Score=517.80 Aligned_cols=368 Identities=27% Similarity=0.485 Sum_probs=308.7
Q ss_pred eeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchhh
Q 015701 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (402)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~~ 82 (402)
+++|+||+++++||++++|+++|+|++++++++++++ +.++|+||||||||||++||+++|+..|.++.++|++|.|.
T Consensus 64 d~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~~ 141 (433)
T TIGR01087 64 DLVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPA 141 (433)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHHH
Confidence 6899999999999999999999999999999999887 56899999999999999999999999999999999999984
Q ss_pred hhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEEe
Q 015701 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (402)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~n 162 (402)
..... ..+.+++|+|+|+++++.+.. ++|+++|||||++||+++|+|+|+|+++|.++++..++++.+|+|
T Consensus 142 ~~~~~--------~~~~~~~V~E~~~~~l~~~~~-~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n 212 (433)
T TIGR01087 142 LEVLD--------QEGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLN 212 (433)
T ss_pred HHHHh--------ccCCCEEEEEcChhHhcCCcc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 43221 135688999999998886654 799999999999999999999999999999999988888999999
Q ss_pred CCChhhHHHhhcccccEEEeecCCCceeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCH
Q 015701 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (402)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~ 242 (402)
.||+.+..+......++++|+...... ..+.....+..+....+.++++|.||++|+++|+ ++++.+|++.
T Consensus 213 ~dd~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~~ 283 (433)
T TIGR01087 213 ADDPRFARLAQKSKAQVIWFSVEKDAE-------RGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLNL 283 (433)
T ss_pred CCCHHHHHhhhhcCceEEEEeCCccCC-------CceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCCH
Confidence 999988777665566788888542211 0111111111111112468999999999999999 8999999999
Q ss_pred HHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhhhccc
Q 015701 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (402)
Q Consensus 243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
+.|+++|++|++++||||++. ..+++.+|||++||||+|+.++++.++ +++++|+|++.+.. .++++.+.+.
T Consensus 284 ~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~-~~ii~I~Gg~~~~~------d~~~~~~~l~ 355 (433)
T TIGR01087 284 EAILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFD-NPVILIVGGDDKGA------DFSPLAPAAA 355 (433)
T ss_pred HHHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHHHHH
Confidence 999999999999999999996 357899999988999999999999995 47899999774432 3566666664
Q ss_pred c-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHh
Q 015701 323 H-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400 (402)
Q Consensus 323 ~-~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~ 400 (402)
. ++.+++.|.....+.+.++..+. .+..++++++|++.+.+.+++||+||++|++.||++|+||++||+.|+++|+
T Consensus 356 ~~~~~v~~~G~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~gdiVLlspa~as~d~f~~~~~RG~~F~~~v~ 432 (433)
T TIGR01087 356 GKVKAVLAIGEDAAKIAPLLKEAGL--SVYLVESLEEAVQAAREVASPGDVVLLSPACASFDQFKSYEERGEKFKELVR 432 (433)
T ss_pred hhCCEEEEECCCHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHhcCCCCEEEECccchhhccccCHHHHHHHHHHHHh
Confidence 3 56888999999888888865432 3456789999999999999999999999999999999999999999999986
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | Back alignment and domain information |
|---|
| >TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Back alignment and domain information |
|---|
| >PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional | Back alignment and domain information |
|---|
| >TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase | Back alignment and domain information |
|---|
| >PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional | Back alignment and domain information |
|---|
| >PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional | Back alignment and domain information |
|---|
| >PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase | Back alignment and domain information |
|---|
| >COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
| >COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional | Back alignment and domain information |
|---|
| >PLN02913 dihydrofolate synthetase | Back alignment and domain information |
|---|
| >PLN02881 tetrahydrofolylpolyglutamate synthase | Back alignment and domain information |
|---|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
| >PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
|---|
| >KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family | Back alignment and domain information |
|---|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase | Back alignment and domain information |
|---|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
| >PRK15453 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC | Back alignment and domain information |
|---|
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
| >PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
|---|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >PHA02519 plasmid partition protein SopA; Reviewed | Back alignment and domain information |
|---|
| >PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed | Back alignment and domain information |
|---|
| >PRK13705 plasmid-partitioning protein SopA; Provisional | Back alignment and domain information |
|---|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13235 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 | Back alignment and domain information |
|---|
| >COG2403 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
|---|
| >COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional | Back alignment and domain information |
|---|
| >PRK13230 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
| >PRK10037 cell division protein; Provisional | Back alignment and domain information |
|---|
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
| >TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
|---|
| >COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
| >PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon | Back alignment and domain information |
|---|
| >cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
| >PRK13234 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
| >PRK13233 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >COG4240 Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
| >COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
| >cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
| >cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 402 | ||||
| 3lk7_A | 451 | The Crystal Structure Of Udp-N-Acetylmuramoylalanin | 2e-28 | ||
| 1e0d_A | 437 | Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L | 7e-26 | ||
| 2uag_A | 437 | Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L | 3e-25 | ||
| 2jff_A | 445 | Crystal Structure Of Murd Ligase In Complex With D- | 4e-25 | ||
| 2wjp_A | 439 | Crystal Structure Of Murd Ligase In Complex With D- | 4e-25 |
| >pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D- Glutamate (Murd) Ligase From Streptococcus Agalactiae To 1.5a Length = 451 | Back alignment and structure |
|
| >pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437 | Back alignment and structure |
| >pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437 | Back alignment and structure |
| >pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Sulfonamide Inhibitor Length = 445 | Back alignment and structure |
| >pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Rhodanine Inhibitor Length = 439 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = 7e-98
Identities = 94/385 (24%), Positives = 175/385 (45%), Gaps = 33/385 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L+ V++E++ A V +++ +TG+NGK+T T + ++LN G + GN
Sbjct: 89 VKKALEKQIPVLTEVELAYLVSES--QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
+G P SE + V+E+SS+Q+ + F P ++V+ NL P HL+ H
Sbjct: 147 IGFPASEVV-------QAANDKDTLVMELSSFQLMGVKE--FRPHIAVITNLMPTHLDYH 197
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG---AFPGVKIDTE 193
+ ++Y K ++ + M ++ +L F E K + + G + +
Sbjct: 198 GSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQDK 257
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
E + + ++ V G HN NA + G+ + + T+
Sbjct: 258 QLFYKGEN-------IMSVDDIGVPGSHNVENALATIA--VAKLAGISNQVIRETLSNFG 308
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
HR+Q + + G+++ +DSK+TN+ AT L K +++ GG + N
Sbjct: 309 GVKHRLQSL-GKVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDR------GNE 361
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 373
F++LI + + ++ G S + + G + +++DAV+ A +A GD I
Sbjct: 362 FDELIPDITGLKHMVVLGESASRVKRAAQKAG--VTYSDALDVRDAVHKAYEVAQQGDVI 419
Query: 374 VLSPGCASFDEFRNFEHRGMVFQEL 398
+LSP AS+D ++NFE RG F +
Sbjct: 420 LLSPANASWDMYKNFEVRGDEFIDT 444
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439 | Back alignment and structure |
|---|
| >1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498 | Back alignment and structure |
|---|
| >1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452 | Back alignment and structure |
|---|
| >2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454 | Back alignment and structure |
|---|
| >2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535 | Back alignment and structure |
|---|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Length = 326 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469 | Back alignment and structure |
|---|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524 | Back alignment and structure |
|---|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475 | Back alignment and structure |
|---|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491 | Back alignment and structure |
|---|
| >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Length = 437 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 100.0 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 100.0 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 100.0 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 100.0 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 100.0 | |
| 2am1_A | 454 | SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl | 100.0 | |
| 1gg4_A | 452 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino | 100.0 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 100.0 | |
| 1j6u_A | 469 | UDP-N-acetylmuramate-alanine ligase MURC; structur | 100.0 | |
| 1e8c_A | 498 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami | 100.0 | |
| 2wtz_A | 535 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di | 100.0 | |
| 1jbw_A | 428 | Folylpolyglutamate synthase; FPGS folate AMPPCP te | 100.0 | |
| 3nrs_A | 437 | Dihydrofolate:folylpolyglutamate synthetase; struc | 100.0 | |
| 2vos_A | 487 | Folylpolyglutamate synthase protein FOLC; ligase, | 100.0 | |
| 1o5z_A | 442 | Folylpolyglutamate synthase/dihydrofolate synthas; | 100.0 | |
| 1w78_A | 422 | FOLC bifunctional protein; DHFS, dihydrofolate syn | 100.0 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 100.0 | |
| 3mvn_A | 163 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M | 99.79 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.57 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 93.12 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 92.01 | |
| 3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD | 91.97 | |
| 3of5_A | 228 | Dethiobiotin synthetase; structural genomics, cent | 91.92 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 91.48 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 90.63 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 89.68 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 89.36 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 88.69 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 88.36 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 88.03 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 87.97 | |
| 3qxc_A | 242 | Dethiobiotin synthetase; DTBS, structural genomics | 87.87 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 87.21 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 86.86 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 85.74 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 85.19 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 84.7 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 84.63 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 84.33 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 84.2 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 83.5 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 83.23 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 83.18 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 82.96 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 82.87 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 81.65 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 81.63 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 81.6 | |
| 3pg5_A | 361 | Uncharacterized protein; structural genomics, PSI- | 80.15 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 80.1 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 80.03 |
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-70 Score=544.25 Aligned_cols=374 Identities=25% Similarity=0.397 Sum_probs=320.4
Q ss_pred ceeeeeccccCCCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCceeeeccCchh
Q 015701 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (402)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~g~~ 81 (402)
++++|+||+++++||++++|+++|+|+++++++++++. +.++|+||||||||||++||+++|+..|.++.++|++|.|
T Consensus 73 ~d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~ 150 (451)
T 3lk7_A 73 FCYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP 150 (451)
T ss_dssp EEEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSC
T ss_pred CCEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChh
Confidence 47899999999999999999999999999999999987 4599999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCCCccEEEEEeCcccccCCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccccCCCeEEEE
Q 015701 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (402)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~~~~~l~~~~~~~~p~i~iiTni~~dH~~~~~t~e~i~~~k~~i~~~~~~~~~~v~ 161 (402)
++.... ...+.+++|+|+|+++++.++. ++|+++|||||++||+|+|+|+|+|+++|.+|++.+++++.+|+
T Consensus 151 ~~~~~~-------~~~~~d~~VlE~~s~~l~~~~~-~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~ 222 (451)
T 3lk7_A 151 ASEVVQ-------AANDKDTLVMELSSFQLMGVKE-FRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVL 222 (451)
T ss_dssp HHHHTT-------TCCTTCEEEEECCHHHHTTCSS-CCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEE
T ss_pred hhhhhh-------cCCCCCEEEEECCccccccccc-cCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 875432 1235788999999998887765 89999999999999999999999999999999999888999999
Q ss_pred eCCChhhHHHhhcccccEEEeecCCCc-eeccccccceEEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCC
Q 015701 162 PFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (402)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi 240 (402)
|.|||.+..++.....++++|+.+... .+.... ..+.+. +. ..+....++++|.||++|+++|+ ++++.+|+
T Consensus 223 n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~--~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi 295 (451)
T 3lk7_A 223 NFNQGISKELAKTTKATIVPFSTTEKVDGAYVQD--KQLFYK--GE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGI 295 (451)
T ss_dssp ETTSHHHHHHHTTCSSEEEEEESSSCCSSEEEET--TEEEET--TE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTC
T ss_pred ECCcHHHHHHHhhcCCeEEEEccCCCcCCEEEEC--CEEEEC--Cc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCC
Confidence 999999988887777788899875432 010000 122221 21 11223579999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEEeecCCeEEEEcCCCCCHHHHHHHHcccCCCcEEEEEcCCCCcCCCCCCcchHhhhhc
Q 015701 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320 (402)
Q Consensus 241 ~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~ 320 (402)
+.+.|.++|++|+++|||||++. ..+++.+|||||||||+|+.++++.++++|+++|+|++. ++. .++++++.
T Consensus 296 ~~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~-r~~-----d~~~l~~~ 368 (451)
T 3lk7_A 296 SNQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLD-RGN-----EFDELIPD 368 (451)
T ss_dssp CHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSC-CSC-----CCGGGHHH
T ss_pred CHHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCC-CCC-----CHHHHHHH
Confidence 99999999999999999999996 367899999999999999999999997667899998653 221 35567766
Q ss_pred cccccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCcccccccChhHHhHHHHHHHh
Q 015701 321 LNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400 (402)
Q Consensus 321 l~~~d~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~ai~~~~~~~~~~d~vll~~G~~s~~~~~~~~~r~~~~~~~~~ 400 (402)
+..+|.++++|...+.+.+.++..+. ++.+++|+++|++.+.+.+++||+||++|++.||++|++|++||+.|+++|+
T Consensus 369 l~~~d~vi~~G~~~~~l~~~~~~~g~--~~~~~~~~~eAv~~a~~~a~~gD~VLlspa~as~d~f~~~~~RG~~F~~~v~ 446 (451)
T 3lk7_A 369 ITGLKHMVVLGESASRVKRAAQKAGV--TYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGDEFIDTFE 446 (451)
T ss_dssp HTTCSEEEECSTTHHHHHHHHHHTTC--CEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHHHHHHHHH
T ss_pred HHhcCEEEEECCCHHHHHHHHHhcCC--ceEEeCCHHHHHHHHHHhCCCCCEEEEcCcCcchhhhhCHHHHHHHHHHHHH
Confidence 66689999999999999888876654 4667899999999999999999999999999999999999999999999997
Q ss_pred c
Q 015701 401 S 401 (402)
Q Consensus 401 ~ 401 (402)
+
T Consensus 447 ~ 447 (451)
T 3lk7_A 447 S 447 (451)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
| >2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* | Back alignment and structure |
|---|
| >1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
| >1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
| >2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* | Back alignment and structure |
|---|
| >1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A | Back alignment and structure |
|---|
| >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* | Back alignment and structure |
|---|
| >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* | Back alignment and structure |
|---|
| >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 | Back alignment and structure |
|---|
| >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* | Back alignment and structure |
|---|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
| >3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} | Back alignment and structure |
|---|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* | Back alignment and structure |
|---|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} | Back alignment and structure |
|---|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A | Back alignment and structure |
|---|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
| >3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 402 | ||||
| d2jfga2 | 140 | c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanin | 1e-24 | |
| d1p3da3 | 215 | c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine | 1e-16 | |
| d1gg4a4 | 214 | c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl | 2e-15 | |
| d2jfga3 | 204 | c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine | 3e-13 | |
| d1e8ca3 | 234 | c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid | 8e-13 | |
| d1j6ua3 | 207 | c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l | 1e-10 | |
| d2gc6a2 | 296 | c.72.2.2 (A:1-296) Folylpolyglutamate synthetase { | 2e-04 | |
| d1o5za2 | 296 | c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase | 3e-04 |
| >d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurD-like peptide ligases, peptide-binding domain superfamily: MurD-like peptide ligases, peptide-binding domain family: MurCDEF C-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Score = 96.5 bits (239), Expect = 1e-24
Identities = 45/144 (31%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR ++V + GV W++DSKATN+ +T L L + LL G +S F
Sbjct: 3 PHRFEVV-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGG-----DGKSADFS 56
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L LN + L M+ A+ GD ++L
Sbjct: 57 PLARYLNGDNVRLYCFGRDGAQLAAL----RPEVAEQTETMEQAMRLLAPRVQPGDMVLL 112
Query: 376 SPGCASFDEFRNFEHRGMVFQELA 399
SP CAS D+F+NFE RG F LA
Sbjct: 113 SPACASLDQFKNFEQRGNEFARLA 136
|
| >d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 215 | Back information, alignment and structure |
|---|
| >d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214 | Back information, alignment and structure |
|---|
| >d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204 | Back information, alignment and structure |
|---|
| >d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234 | Back information, alignment and structure |
|---|
| >d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207 | Back information, alignment and structure |
|---|
| >d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296 | Back information, alignment and structure |
|---|
| >d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 402 | |||
| d1p3da3 | 215 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 100.0 | |
| d2jfga3 | 204 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 100.0 | |
| d1e8ca3 | 234 | UDP-N-acetylmuramyl tripeptide synthetase MurE {Es | 100.0 | |
| d1gg4a4 | 214 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 100.0 | |
| d1j6ua3 | 207 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 100.0 | |
| d1o5za2 | 296 | Folylpolyglutamate synthetase {Thermotoga maritima | 99.97 | |
| d2gc6a2 | 296 | Folylpolyglutamate synthetase {Lactobacillus casei | 99.96 | |
| d2jfga2 | 140 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 99.91 | |
| d1gg4a1 | 135 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 99.78 | |
| d1e8ca2 | 160 | UDP-N-acetylmuramyl tripeptide synthetase MurE {Es | 99.65 | |
| d1j6ua2 | 151 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 99.47 | |
| d1p3da2 | 152 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 99.37 | |
| d1o5za1 | 137 | Folylpolyglutamate synthetase, C-terminal domain { | 99.15 | |
| d2gc6a1 | 129 | Folylpolyglutamate synthetase, C-terminal domain { | 99.15 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.66 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 94.73 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.03 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.58 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 92.45 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.92 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.42 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 89.6 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 89.03 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 87.52 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 85.98 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 85.9 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 85.86 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 85.26 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 83.59 | |
| d2vo1a1 | 273 | CTP synthase PyrG, N-terminal domain {Human (Homo | 83.07 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 82.01 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 80.74 |
| >d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=1.6e-37 Score=277.52 Aligned_cols=207 Identities=18% Similarity=0.210 Sum_probs=160.7
Q ss_pred HHHHHHhhCCCCCcEEEEecCCChhhHHHHHHHHHHhcCCcee-eeccCchhhhhhhhhhccCCCCCCCccEEEEEeCcc
Q 015701 31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (402)
Q Consensus 31 ~~~~~~~~~~~~~~vI~VTGT~GKTTt~~ml~~iL~~~g~~~~-~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~ 109 (402)
|.|+|+++. +..++|+||||||||||++||+++|+..|+.+. +.|.+..++..... ....+++|+|++++
T Consensus 1 r~e~L~~~~-r~~~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~v~E~~~~ 71 (215)
T d1p3da3 1 RAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAH--------LGASRYLIAEADES 71 (215)
T ss_dssp HHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTTTEEEE--------CCSSSEEEEECCCT
T ss_pred CHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccCccccc--------cCCCceEEEEcCCc
Confidence 567888877 677899999999999999999999999998874 34444333322110 23457799999987
Q ss_pred cccCCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhccccCCCeEEEEeCCChhhHHHhhcccccEEEeecCCCc
Q 015701 110 QMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188 (402)
Q Consensus 110 ~l~~~~~~~~p~i~iiTni~~dH~~~~-~t~e~i~~~k~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~ 188 (402)
+.... .++||++|||||++||+|+| +++|.|+++|.++++.++++|.+|+|.||+....+......++++||.+...
T Consensus 72 ~~~~~--~~~p~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~ 149 (215)
T d1p3da3 72 DASFL--HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQA 149 (215)
T ss_dssp TSGGG--GCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESSTTC
T ss_pred cccce--eEcCCEEEEecccccccccccCCHHHHHHHHHHHHhcCCCCCEEEEeCcchHHHHHHHhcCCceEEEcccccc
Confidence 66544 37999999999999999988 6999999999999999999999999999999999887777888999876542
Q ss_pred eec-----cccccce-EEEecCCeeeEEeeeccCcCChhhHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 015701 189 KID-----TEAKTAS-FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253 (402)
Q Consensus 189 ~~~-----~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~ 253 (402)
... ....... +......... .+.+|++|.||++|+++|+ ++|+.+|+++++|+++|++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~N~laAi--a~a~~lGi~~~~i~~~L~~Fk 215 (215)
T d1p3da3 150 DYRIEDYEQTGFQGHYTVICPNNERI---NVLLNVPGKHNALNATAAL--AVAKEEGIANEAILEALADFQ 215 (215)
T ss_dssp SEEEEEEEEETTEEEEEEECTTCCEE---EEEESSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCC
T ss_pred ccccccccccccccccccccccccee---eEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence 211 1111111 1111222222 2468999999999999999 899999999999999999986
|
| >d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
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| >d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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| >d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
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| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
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| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
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| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
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| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
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| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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