Citrus Sinensis ID: 015719
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 402 | ||||||
| 359476646 | 402 | PREDICTED: UPF0183 protein At3g51130-lik | 0.990 | 0.990 | 0.865 | 0.0 | |
| 224134150 | 401 | predicted protein [Populus trichocarpa] | 0.975 | 0.977 | 0.86 | 0.0 | |
| 356538264 | 403 | PREDICTED: UPF0183 protein At3g51130-lik | 0.990 | 0.987 | 0.845 | 0.0 | |
| 357483667 | 404 | hypothetical protein MTR_5g021520 [Medic | 0.990 | 0.985 | 0.835 | 0.0 | |
| 356496677 | 400 | PREDICTED: UPF0183 protein At3g51130-lik | 0.990 | 0.995 | 0.844 | 0.0 | |
| 449434186 | 398 | PREDICTED: UPF0183 protein At3g51130-lik | 0.985 | 0.994 | 0.844 | 0.0 | |
| 224094913 | 398 | predicted protein [Populus trichocarpa] | 0.962 | 0.972 | 0.853 | 0.0 | |
| 449491389 | 398 | PREDICTED: UPF0183 protein At3g51130-lik | 0.985 | 0.994 | 0.844 | 0.0 | |
| 388499418 | 404 | unknown [Medicago truncatula] | 0.990 | 0.985 | 0.828 | 0.0 | |
| 297735048 | 389 | unnamed protein product [Vitis vinifera] | 0.962 | 0.994 | 0.863 | 0.0 |
| >gi|359476646|ref|XP_003631875.1| PREDICTED: UPF0183 protein At3g51130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/400 (86%), Positives = 369/400 (92%), Gaps = 2/400 (0%)
Query: 5 QKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEP 64
Q+PRRRCEGTAMGAIVLDL+PG+GIGPFSLGMPI +AFA IEQQPNIYDVVHVKYFDEEP
Sbjct: 3 QRPRRRCEGTAMGAIVLDLKPGLGIGPFSLGMPISKAFAQIEQQPNIYDVVHVKYFDEEP 62
Query: 65 LKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYAL 124
LKLDI+ISFPDHGFHLRFDPWSQRLRLIEIFD+KRLQMRYATSLIGG STLATFVAVYAL
Sbjct: 63 LKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDVKRLQMRYATSLIGGPSTLATFVAVYAL 122
Query: 125 FGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVS 184
FGPTFPG YDK+R VY LFYPGLSFAFPIP QY DCC D EAELPLEFPDGTTPVTCRVS
Sbjct: 123 FGPTFPGSYDKDRGVYTLFYPGLSFAFPIPTQYTDCCHDGEAELPLEFPDGTTPVTCRVS 182
Query: 185 IYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQDV 244
IYD S D KVGVGS +KA AP LP GSLY+EEVH KLGEEL FTVG QHIPFGASPQDV
Sbjct: 183 IYDSSTDSKVGVGSSMEKASAPPLPAGSLYMEEVHVKLGEELRFTVGGQHIPFGASPQDV 242
Query: 245 WTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFI 304
WTELGRPCGIHQKQVDQMVIHSASDPRPR+TLCGDYFYNY+ RGLDILFDGQTHKIKKF+
Sbjct: 243 WTELGRPCGIHQKQVDQMVIHSASDPRPRTTLCGDYFYNYFDRGLDILFDGQTHKIKKFV 302
Query: 305 MHTNYPGHADFNSYIKCNFIILGSDCTSA--EVHSYKNKITPNTKWEQVKEILGDCGRAA 362
+HTNYPGHADFNSY+KCNF+I GSD + EV K++ITP+TKWEQVKEILGDCGRAA
Sbjct: 303 LHTNYPGHADFNSYMKCNFVIYGSDFGGSFQEVKMSKHRITPSTKWEQVKEILGDCGRAA 362
Query: 363 IQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 402
IQTQGST+NPFGSTFVYGYQN+AFEVMKNGYI+TVT+FQS
Sbjct: 363 IQTQGSTNNPFGSTFVYGYQNVAFEVMKNGYIATVTLFQS 402
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134150|ref|XP_002327768.1| predicted protein [Populus trichocarpa] gi|222836853|gb|EEE75246.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356538264|ref|XP_003537624.1| PREDICTED: UPF0183 protein At3g51130-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357483667|ref|XP_003612120.1| hypothetical protein MTR_5g021520 [Medicago truncatula] gi|355513455|gb|AES95078.1| hypothetical protein MTR_5g021520 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356496677|ref|XP_003517192.1| PREDICTED: UPF0183 protein At3g51130-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449434186|ref|XP_004134877.1| PREDICTED: UPF0183 protein At3g51130-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224094913|ref|XP_002310289.1| predicted protein [Populus trichocarpa] gi|222853192|gb|EEE90739.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449491389|ref|XP_004158881.1| PREDICTED: UPF0183 protein At3g51130-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|388499418|gb|AFK37775.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|297735048|emb|CBI17410.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 402 | ||||||
| TAIR|locus:2080873 | 410 | AT3G51130 [Arabidopsis thalian | 0.992 | 0.973 | 0.815 | 1.1e-188 | |
| DICTYBASE|DDB_G0271880 | 519 | DDB_G0271880 "UPF0183 family p | 0.614 | 0.475 | 0.384 | 2.9e-60 | |
| UNIPROTKB|Q9BSU1 | 422 | C16orf70 "UPF0183 protein C16o | 0.420 | 0.400 | 0.431 | 3.3e-55 | |
| RGD|621098 | 422 | RGD621098 "similar to RIKEN cD | 0.402 | 0.383 | 0.443 | 4.2e-55 | |
| MGI|MGI:2443049 | 422 | D230025D16Rik "RIKEN cDNA D230 | 0.402 | 0.383 | 0.443 | 7.8e-54 | |
| FB|FBgn0035877 | 438 | CG7083 [Drosophila melanogaste | 0.786 | 0.721 | 0.364 | 1.3e-45 | |
| WB|WBGene00011344 | 422 | T01G9.2a [Caenorhabditis elega | 0.390 | 0.372 | 0.356 | 4.7e-41 | |
| UNIPROTKB|P34692 | 422 | T01G9.2 "UPF0183 protein T01G9 | 0.390 | 0.372 | 0.356 | 4.7e-41 | |
| ASPGD|ASPL0000038147 | 516 | AN10404 [Emericella nidulans ( | 0.320 | 0.25 | 0.310 | 4.4e-20 | |
| UNIPROTKB|G4MWK3 | 526 | MGG_01174 "Uncharacterized pro | 0.447 | 0.342 | 0.267 | 4.9e-17 |
| TAIR|locus:2080873 AT3G51130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1829 (648.9 bits), Expect = 1.1e-188, P = 1.1e-188
Identities = 328/402 (81%), Positives = 366/402 (91%)
Query: 2 LQSQKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFD 61
L Q+PRRR EGTAMGA V DLRPGVGIGPFS+GMPICEAFA IEQQPNIYDVVHVKY+D
Sbjct: 11 LVMQRPRRRLEGTAMGATVFDLRPGVGIGPFSIGMPICEAFAQIEQQPNIYDVVHVKYYD 70
Query: 62 EEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 121
E+PLKLD++ISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAV
Sbjct: 71 EDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAV 130
Query: 122 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTC 181
YALFGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTC
Sbjct: 131 YALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTC 190
Query: 182 RVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASP 241
RVSIYD S+DKKVGVG L D+A P LP GSLY+EEVH K G+EL+FTVG QH+PFGASP
Sbjct: 191 RVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASP 250
Query: 242 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIK 301
QDVWTELGRPCGIH KQVDQMVIHSASDPRP++T+CGDYFYNY+TRGLDILFDG+THK+K
Sbjct: 251 QDVWTELGRPCGIHPKQVDQMVIHSASDPRPKTTICGDYFYNYFTRGLDILFDGETHKVK 310
Query: 302 KFIMHTNYPGHADFNSYIKCNFII-LGSDCTSAEVHSYKNKITPNTKWEQVKEILGDCGR 360
KF++HTNYPGHADFNSYIKCNF+I G+D +AE + NKITP+T W+QVKEILG+CG
Sbjct: 311 KFVLHTNYPGHADFNSYIKCNFVISAGAD--AAEANRSGNKITPSTNWDQVKEILGECGP 368
Query: 361 AAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 402
AAIQTQGSTSNPFGST+VYGYQN+AFEVMKNG+I+T+T+FQS
Sbjct: 369 AAIQTQGSTSNPFGSTYVYGYQNVAFEVMKNGHIATITLFQS 410
|
|
| DICTYBASE|DDB_G0271880 DDB_G0271880 "UPF0183 family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9BSU1 C16orf70 "UPF0183 protein C16orf70" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|621098 RGD621098 "similar to RIKEN cDNA D230025D16Rik" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2443049 D230025D16Rik "RIKEN cDNA D230025D16 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| FB|FBgn0035877 CG7083 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00011344 T01G9.2a [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P34692 T01G9.2 "UPF0183 protein T01G9.2" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000038147 AN10404 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4MWK3 MGG_01174 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 402 | |||
| pfam03676 | 395 | pfam03676, UPF0183, Uncharacterized protein family | 0.0 |
| >gnl|CDD|217668 pfam03676, UPF0183, Uncharacterized protein family (UPF0183) | Back alignment and domain information |
|---|
Score = 542 bits (1399), Expect = 0.0
Identities = 185/405 (45%), Positives = 245/405 (60%), Gaps = 39/405 (9%)
Query: 26 GVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPW 85
G G F LGMPI +A A I+QQP I V VKY D++PL +D++I+ P G LRFDP
Sbjct: 1 GNGQWEFVLGMPISQAIAIIQQQPRIIKNVQVKYSDKDPLSMDLVINLPQDGIRLRFDPV 60
Query: 86 SQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYP 145
SQRL+LIE+FD+KR++++YA S L T VY FG T PGVYD +Y LF+
Sbjct: 61 SQRLKLIEVFDLKRVKLKYAGVYFNSPSVLPTIEQVYHSFGATHPGVYDASHQLYALFFR 120
Query: 146 GLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIA 205
GLSF+FPI ++Y L+FPDG TPV R+SIYDGS +A
Sbjct: 121 GLSFSFPIDSKYTPGFGHGLGS--LKFPDGATPVVSRMSIYDGSN---------LAEAKV 169
Query: 206 PSLPV----GSLYIEEVHA------KLGEELHFTVG--------------SQHIPFGASP 241
P LP+ G+LY+E V LG +L ++HI FG S
Sbjct: 170 PPLPLSCYLGNLYLESVEVLRDSGGTLGLKLQLVTEGGPGVALEPRVRTFTRHIYFGDSC 229
Query: 242 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIK 301
QDV + LG PC + K D+M IHS SD R + C DYF+NY+T GLDILFD QTH++K
Sbjct: 230 QDVLSALGSPCKVFYKSEDKMKIHSPSDHRLVQSKCSDYFFNYFTLGLDILFDAQTHRVK 289
Query: 302 KFIMHTNYPGHADFNSYIKCNFII-LGSDCTSAEVHSYKNKITPNTKWEQVKEILGDCG- 359
KF++HTN+PGH +FN Y +CNF+I L +D + + ITP +KW+QV EILG+ G
Sbjct: 290 KFVLHTNFPGHYNFNMYHRCNFVIQLPADKDGTDSPTDSPPITPYSKWDQVSEILGNSGE 349
Query: 360 RAAIQTQGSTS--NPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 402
R + + S++ NPFGSTF YGYQ+I FEVM N +I++VT++ +
Sbjct: 350 RPVVLHRASSTNTNPFGSTFCYGYQDIIFEVMPNNHIASVTLYGA 394
|
This family of proteins includes Lin-10 from C. elegans. Length = 395 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 402 | |||
| PF03676 | 394 | UPF0183: Uncharacterised protein family (UPF0183); | 100.0 | |
| KOG2819 | 413 | consensus Uncharacterized conserved protein [Funct | 100.0 |
| >PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-127 Score=969.77 Aligned_cols=366 Identities=47% Similarity=0.866 Sum_probs=337.2
Q ss_pred CCcccceecCCcHHHHHHHHhcCCCccceEEEEEcCCCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCCcceEEEc
Q 015719 26 GVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYA 105 (402)
Q Consensus 26 g~gLG~f~LG~sL~~vl~~Lk~~~~~~~~v~i~Ys~~~Pl~~~Ivi~l~~~GirL~Fd~~~QRL~lIEv~d~~~~~L~Y~ 105 (402)
|.++|+|+|||||||||++||+++++||+|||+||+++|+..||||+||++||||+|||++||||||||+||++++|+|+
T Consensus 1 ~~~~g~f~LG~~l~~vl~~lk~~~~~~~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~~QrL~lIEv~d~~~i~L~Y~ 80 (394)
T PF03676_consen 1 GNSLGEFVLGMSLHQVLTILKSEPQTFPKVDLIYSDQDPLSSDIVINLPENGIRLRFDGPSQRLRLIEVYDFSKIKLRYK 80 (394)
T ss_pred CCccceEEcCCcHHHHHHHHHhccccCCceEEEECCCCCCcCCEEEEcCCCCeEEEECCCCcEEEEEEEecCccceEEeC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcceeeeehhccCCCCCCccCCCCcEEEEeeCceEEEEeCCcccccccccccCCcccccCCCCCcceeEEEE
Q 015719 106 TSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSI 185 (402)
Q Consensus 106 ~~~~~~~~~~~t~~~Iy~~FGPTyPG~y~~~~~~y~LsYpGlaF~F~i~~~~~~~~~~~~~~l~l~~~~~~~p~~~~m~I 185 (402)
+++|++|++.|||++||++|||||||+||+++++|+||||||||+||+++++++.+.++.+ +++++++++|++++|+|
T Consensus 81 ~~~~~~p~~~pTf~~Iy~~FGPTyPG~yd~~~~~YvLsYpGlaF~Fpi~~~~~~~~~~~~~--sl~~~~~ssp~~tsmaI 158 (394)
T PF03676_consen 81 GSVFSSPEIGPTFRHIYRLFGPTYPGEYDKSRGTYVLSYPGLAFSFPIPSKFQSSYSDGLD--SLEFPSGSSPVATSMAI 158 (394)
T ss_pred cccccCcccCcchheeheccCCCCCCccCCCCCEEEEEECCEEEEeeCchhhcccccCCcc--eeecCCCCCcceeEEEE
Confidence 9999999999999999999999999999999999999999999999999988888887753 88999999999999999
Q ss_pred eeCCCCcccccCCcccccCCCCCCC----CceEEEEEEEEcC------CcEEEEecc--------------eeEEcCCCH
Q 015719 186 YDGSADKKVGVGSLFDKAIAPSLPV----GSLYIEEVHAKLG------EELHFTVGS--------------QHIPFGASP 241 (402)
Q Consensus 186 ~~~~~~~~v~~G~s~~e~~~p~l~~----~~~~~~~v~v~~~------~~l~f~~~~--------------~~I~~G~T~ 241 (402)
| +|++|++++.|++|. +++|+++|+|... ..+.|.... ++|+||+||
T Consensus 159 f---------~G~s~~ear~p~lp~~~~~~~~~~~~v~v~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~ 229 (394)
T PF03676_consen 159 F---------SGSSWAEARAPPLPLSCYCGNLYLESVEVLRDNKETVGLELSLVTEGGPGRIEEPRRSNFERWIRFGDTP 229 (394)
T ss_pred E---------cCCchhcccCCCccccccCCCcceeeEEeeccCCCCcCcEEEEEEcCCCcccccccccCceEEEEeCCCH
Confidence 9 999999999987764 8889999988433 244444332 699999999
Q ss_pred HHHHHhcCCCCccccccCCceeeccCCCCCCCCCccCcceeeecccceeEEEeCCcceEEEEEeeeCCCCCcCcCceeee
Q 015719 242 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKC 321 (402)
Q Consensus 242 QDVl~eLGpP~~if~K~Ddrm~IH~~~~~~~~~~~~~dyFyNYF~lGlDiLfd~~th~v~K~ILHtN~PG~y~Fn~Y~RC 321 (402)
|||++|||||++||||+||||+||++++.+...+..+|||||||+||||||||++||+|||||||||+||||+||+|+||
T Consensus 230 qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~~~yf~nYf~~G~Dilfd~~~~~v~K~ILHtN~PG~~~Fn~y~rC 309 (394)
T PF03676_consen 230 QDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKPSDYFYNYFTLGLDILFDGNTHRVKKFILHTNIPGHYDFNRYNRC 309 (394)
T ss_pred HHHHHhhCCccceeecccccccccccccccCCccCCCCEEEeccccceEEEEeCCCceEEEEEEecCCCCCccccceeee
Confidence 99999999999999999999999999888777788899999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCcc-cccccccccCCCCChHHHHHhhCCCC-CceEecCCCCC--CCCcceEEeeeCCeEEEEEcCCceEEE
Q 015719 322 NFIILGSDCTSA-EVHSYKNKITPNTKWEQVKEILGDCG-RAAIQTQGSTS--NPFGSTFVYGYQNIAFEVMKNGYISTV 397 (402)
Q Consensus 322 ~w~I~~~~~~~~-~~~~~~~~it~~~~~~~i~~~l~~~~-rpvvLnR~~~~--npfG~T~lyG~~giIfEV~~n~~IasV 397 (402)
||+|....++.. +.......|+++++||+|++.|.... +||||||++++ ||||+|+||||+|||||||+||+||||
T Consensus 310 ~f~I~~~~~~~~~~~~~~~~~i~~~~kwd~i~~~L~~~~~~pvvl~r~s~~n~npfGsT~~yG~~~~IfEVm~n~~IasV 389 (394)
T PF03676_consen 310 NFEIELSNDSNETDSPTNSPMITPYTKWDDIQEILGKAEDRPVVLNRASSSNDNPFGSTFLYGYQGIIFEVMKNGHIASV 389 (394)
T ss_pred eeEEEecCcccccccccccceeeccCCHhHhHHhhcccccCCcccccccccCCCCCcceeEeCCCCEEEEEecCCcEEEE
Confidence 999999764332 22223345999999999999997654 99999999886 999999999999999999999999999
Q ss_pred EEeeC
Q 015719 398 TMFQS 402 (402)
Q Consensus 398 Tlf~~ 402 (402)
|||+.
T Consensus 390 Tly~~ 394 (394)
T PF03676_consen 390 TLYQA 394 (394)
T ss_pred EEecC
Confidence 99974
|
|
| >KOG2819 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 402 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-09 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 4e-09
Identities = 72/436 (16%), Positives = 126/436 (28%), Gaps = 130/436 (29%)
Query: 20 VLDLRPGVGIGPFSLGMPIC-------EAFASIEQQPNIYDVVH---VKYFDEEPLKLDI 69
+L+LRP + G+ + S + Q + + +K + L++
Sbjct: 144 LLELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 70 IISF-----------PDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLI--------- 109
+ DH +++ S + L + Y L+
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNAK 257
Query: 110 ------GGSSTLAT--FVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCC 161
L T F V + M P + + +Y DC
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKS--LLLKYLDC- 313
Query: 162 QDREAELPLEFPDGTTPVTCRV---SIYDGSA----------DK-----KVGVGSL---- 199
R +LP E P + SI DG A DK + + L
Sbjct: 314 --RPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 200 ----FDK-AIAPS---LPVGSLYI------EEVHAKLGEELH-----------FTVGSQH 234
FD+ ++ P +P L + + + +LH T+
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---S 427
Query: 235 IPFGASPQDVWTELGRPC----GIHQKQVDQMVIHSASDPRPRSTLCGD-YFYNYYTRGL 289
IP ++ EL +H+ VD I D D YFY++ L
Sbjct: 428 IP------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 290 DILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDC--------TSAEVHSYKNK 341
+ ++ F + DF +++ + T ++ YK
Sbjct: 482 KNI--EHPERMTLF--RMVF---LDFR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 342 ITPN-TKWEQ-VKEIL 355
I N K+E+ V IL
Sbjct: 534 ICDNDPKYERLVNAIL 549
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00