Citrus Sinensis ID: 015735

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
ccccccEEEccEEEEEcccccEEEEEEEEEcccccEEEEEEEEcccccEEEEccccccccccEEEEEEEcccccHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEccccccccccHHcccccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccc
ccccEEEEccHHcccccccEEEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEHHHHHcccccccccccccccccEEcHHHHHHHHHHHHHHHHHHHEEccccccccccccccccEEEEEEEEcccccHHHccHHHHccccccEEEEcEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHcHHHHHcHHHcccccccccccHccHHHHHHHcHHcccccccccccccccccEcccccccccHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccc
maeelldiqplelKFTFEVKKQSTCVIQlgnksdqcvafkvkttspkkycvrpnvsiikpkaisdftginCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMqaqrvappdlqckdkfliqgivvpfgtsdeditsdmfakdsgkyveEKKLRVIlmsppqspvllprngelkqdsspetslqkdralsgvenippgdgvaanaEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLreakdvqtfessKDIDELISAaedeqsrpaedaselkpaKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYlshpqnrlsll
maeelldiqpleLKFTFEVKKQSTCViqlgnksdqcvafkvkttspkkycvrpnvsiikpkaiSDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPfgtsdeditsdMFAKDSGKYVEEKKLRVILMsppqspvllprngelkqdsspetslqkdralSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKerdesraakdvqmfgttnvtnklreakdvqtfesskDIDELISAaedeqsrpaedaselkpakDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHElevlrrksnlrrvQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINcvsslcllcchltllecvchIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
*****LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFA*****YV***KLRVI*************************************************EVFETAKFAD********************************************************************************LELKLAKDFEELKLKLNVM*****************************HELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLS*********
**EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLA********************FLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM**************************************************************************************************************************************************************************************************************LFVCMVALIGLVVGYLSHPQNRLS**
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNG***************RALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLEN**********KDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISA**************LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
**EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP*****************************************************************************************************************************SELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQN*****
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MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query401 2.2.26 [Sep-21-2011]
B9DHD7386 Vesicle-associated protei yes no 0.842 0.875 0.366 1e-59
Q9SHC8239 Vesicle-associated protei no no 0.466 0.782 0.382 3e-35
Q8VZ95256 Vesicle-associated protei no no 0.361 0.566 0.392 8e-33
Q84WW5239 Vesicle-associated protei no no 0.359 0.602 0.406 1e-30
Q9LVU1220 Vesicle-associated protei no no 0.309 0.563 0.404 2e-26
Q9SYC9571 Vesicle-associated protei no no 0.376 0.264 0.335 1e-23
O82213149 Vesicle-associated protei no no 0.304 0.818 0.373 2e-23
P40075244 Vesicle-associated membra yes no 0.304 0.5 0.264 4e-08
O60119383 Vesicle-associated membra yes no 0.825 0.864 0.236 2e-07
A5GFS8243 Vesicle-associated membra yes no 0.139 0.230 0.491 2e-07
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function desciption
 Score =  230 bits (587), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 160/436 (36%), Positives = 222/436 (50%), Gaps = 98/436 (22%)

Query: 1   MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
           M   LLDIQP  L+F  ++KKQ++CV+QL N +   VAFKVKTTSPKKYCVRPNV ++ P
Sbjct: 1   MNMPLLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60

Query: 61  KAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVA 120
           K+  +FT                                            V MQA +  
Sbjct: 61  KSTCEFT--------------------------------------------VIMQAFKEP 76

Query: 121 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPR 180
           PPD+ CKDKFLIQ   V   T+DEDIT+ MF+K  GK++EE KLRV L+ P  SP L P 
Sbjct: 77  PPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSDSPELSPI 136

Query: 181 NGELKQDSSPETSLQKDRALSGVENIPP----GDGV-------------AANAEVFETAK 223
           N   KQ +  E S+ KDR  S  E + P    G+ V             A NA+  +T K
Sbjct: 137 NTP-KQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGHDELKAADNAKELKTPK 195

Query: 224 FA-----------DELTETKD------------LQWLENAKERDESRAAKDVQMFGTTNV 260
            A           ++L  TKD               + + K+ D+ RA K      TTN+
Sbjct: 196 MATVDFVEDRYTANDLKATKDSYDSSRMAKETGFDPIRSHKDADDGRAIK-----ATTNL 250

Query: 261 TNKLREAKDV---QTFESSKDIDE--LISAAEDEQSRPAEDASELKPAKDILELKLAKDF 315
              +++A D+   Q F +   +D    IS   D       D   ++    + ELKL KD 
Sbjct: 251 DAPMKKAMDLPRDQGFTNGIAVDSEPKISKERDVVQLQKTDGQNVR---GLDELKLVKDI 307

Query: 316 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPL 375
           EE+KLK++ ++S+L++A+ TI KLME R ++++ +  L+HEL  LR K  ++ V  GFPL
Sbjct: 308 EEMKLKVDALESKLKQADSTISKLMEERSISSQHRQSLQHELAELRTKKIVKEVHNGFPL 367

Query: 376 LFVCMVALIGLVVGYL 391
           L+VC+VA I  V+G+ 
Sbjct: 368 LYVCVVAFIAYVIGHF 383
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus scrofa GN=VAPB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
449432791340 PREDICTED: vesicle-associated protein 2- 0.845 0.997 0.487 1e-87
359806816295 uncharacterized protein LOC100801987 [Gl 0.735 1.0 0.472 3e-87
358248386295 uncharacterized protein LOC100794670 [Gl 0.735 1.0 0.474 1e-86
225432396293 PREDICTED: vesicle-associated protein 2- 0.725 0.993 0.494 7e-86
357478585306 Vesicle-associated membrane protein-asso 0.733 0.960 0.455 5e-83
255551631304 vesicle-associated membrane protein, put 0.713 0.940 0.467 8e-83
217072786306 unknown [Medicago truncatula] 0.733 0.960 0.453 1e-81
225451130336 PREDICTED: vesicle-associated protein 2- 0.815 0.973 0.456 1e-77
359806487278 uncharacterized protein LOC100816526 [Gl 0.688 0.992 0.401 2e-64
449517920394 PREDICTED: vesicle-associated protein 2- 0.862 0.878 0.365 9e-60
>gi|449432791|ref|XP_004134182.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] gi|449495402|ref|XP_004159830.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 192/394 (48%), Positives = 243/394 (61%), Gaps = 55/394 (13%)

Query: 1   MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
           M  EL +IQP ELKFTFE+KKQS+C+IQL NKS+Q +AFKVKTTSPKKYCVRPN  IIKP
Sbjct: 1   MTMELFEIQPAELKFTFELKKQSSCLIQLINKSEQHIAFKVKTTSPKKYCVRPNTGIIKP 60

Query: 61  KAISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVA 120
           K   DFT                                            VTM AQR A
Sbjct: 61  KNTCDFT--------------------------------------------VTMLAQRTA 76

Query: 121 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPR 180
           PPD+QCKDKFL+QG V+  GTS+EDITSD+FAKDSGK++EEKKL+V L S   +PVLLP 
Sbjct: 77  PPDMQCKDKFLVQGTVISPGTSEEDITSDVFAKDSGKHIEEKKLKVFLASATPTPVLLPI 136

Query: 181 NGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENA 240
           NGELK DS+ ETS+ +DR  +GVENIPP   VA ++   +T K  DEL        L   
Sbjct: 137 NGELKLDSNHETSMPRDRMQTGVENIPPPSKVAEDSNGLDTRKHIDELRPVDTPVSLSPP 196

Query: 241 KERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASEL 300
                 + A+ V+   T    ++   A++V T  S     E+  + E+ ++ PAE   E 
Sbjct: 197 -----YKVAEGVEKIDTCKDADENGAAENVPTRRS-----EVAESVENIETMPAEGIEES 246

Query: 301 KPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVL 360
           K +KD+ EL L KDF+ELK KL +MD++L EAE TI +L + R + T+E++MLK +LE L
Sbjct: 247 KLSKDLPELNLTKDFQELKSKLALMDAELLEAEATIMRLKKERTVTTQEREMLKRDLETL 306

Query: 361 RRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHP 394
            RKS  R +QVGFPL++V MVA I L+VGY  HP
Sbjct: 307 -RKSGQRSIQVGFPLMYVLMVACISLLVGYFIHP 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359806816|ref|NP_001241309.1| uncharacterized protein LOC100801987 [Glycine max] gi|255641982|gb|ACU21258.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|358248386|ref|NP_001239873.1| uncharacterized protein LOC100794670 [Glycine max] gi|255634614|gb|ACU17669.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225432396|ref|XP_002277190.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|297736920|emb|CBI26121.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357478585|ref|XP_003609578.1| Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] gi|355510633|gb|AES91775.1| Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255551631|ref|XP_002516861.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223543949|gb|EEF45475.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|217072786|gb|ACJ84753.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225451130|ref|XP_002266266.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|298204983|emb|CBI34290.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359806487|ref|NP_001240997.1| uncharacterized protein LOC100816526 [Glycine max] gi|255635548|gb|ACU18124.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449517920|ref|XP_004165992.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.201 0.316 0.469 3.9e-44
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.142 0.238 0.637 1.6e-43
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.142 0.259 0.614 1.6e-41
TAIR|locus:2025585386 VAP27-2 "vamp/synaptobrevin-as 0.523 0.544 0.320 2.7e-40
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.299 0.502 0.419 1.9e-38
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.147 0.395 0.576 3.5e-26
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.239 0.150 0.427 2.1e-22
UNIPROTKB|Q5F419151 VAPA "Uncharacterized protein" 0.144 0.384 0.474 1.2e-11
SGD|S000000922244 SCS2 "Integral ER membrane pro 0.137 0.225 0.472 1.3e-11
POMBASE|SPBC16G5.05c383 SPBC16G5.05c "VAP family prote 0.451 0.472 0.265 6.1e-10
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 201 (75.8 bits), Expect = 3.9e-44, Sum P(3) = 3.9e-44
 Identities = 39/83 (46%), Positives = 58/83 (69%)

Query:   112 VTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 171
             VTMQAQ+ AP D+QCKDKFL+QG++   G + +++T +MF+K++G  VEE KLRV  ++P
Sbjct:    85 VTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAP 144

Query:   172 PQSPVLLPRNGELKQDSSPETSL 194
             P+ P  +    E  + SSP  S+
Sbjct:   145 PRPPSPVHEGSE--EGSSPRASV 165
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0046907 "intracellular transport" evidence=TAS
GO:0000326 "protein storage vacuole" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0016021 "integral to membrane" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006605 "protein targeting" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006886 "intracellular protein transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000000922 SCS2 "Integral ER membrane protein, regulates phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPBC16G5.05c SPBC16G5.05c "VAP family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B9DHD7VAP22_ARATHNo assigned EC number0.36690.84280.8756yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 4e-19
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 6e-11
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 45/152 (29%), Positives = 54/152 (35%), Gaps = 46/152 (30%)

Query: 5   LLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
           LL I P   L F     KQ T  + L N SD+ VAFKVKTT+PK+Y VRPN  I+KP   
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 64  SDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPD 123
              T                                            +T Q     P D
Sbjct: 61  VTIT--------------------------------------------ITRQPFDKEPGD 76

Query: 124 LQCKDKFLIQGIVVPFGTSDEDITSDMFAKDS 155
            + KDKF+IQ    P    D         K+ 
Sbjct: 77  PK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNG 107

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 401
KOG0439218 consensus VAMP-associated protein involved in inos 99.95
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.95
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.9
PF14874102 PapD-like: Flagellar-associated PapD-like 98.09
PRK10884206 SH3 domain-containing protein; Provisional 96.49
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 94.02
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 89.04
PRK0440675 hypothetical protein; Provisional 87.2
PRK10884206 SH3 domain-containing protein; Provisional 86.93
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 85.79
PRK0432574 hypothetical protein; Provisional 84.25
PRK10404101 hypothetical protein; Provisional 83.01
PF0595794 DUF883: Bacterial protein of unknown function (DUF 81.48
PRK0211973 hypothetical protein; Provisional 80.9
PRK0279372 phi X174 lysis protein; Provisional 80.33
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=99.95  E-value=8.4e-28  Score=216.91  Aligned_cols=130  Identities=40%  Similarity=0.662  Sum_probs=117.5

Q ss_pred             CCCceEec-CeeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhcc
Q 015735            3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCH   81 (401)
Q Consensus         3 ~~lL~I~P-~EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~   81 (401)
                      ..+|.|+| .+|.|.+++++++++.|+|+|+++.+||||||||+|++||||||.|+|.||++++|.              
T Consensus         6 ~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~--------------   71 (218)
T KOG0439|consen    6 ESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIE--------------   71 (218)
T ss_pred             cCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEE--------------
Confidence            46899999 799999999999999999999999999999999999999999999999999999999              


Q ss_pred             cccchhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeCCCCCCcchhhhhhccCC--CCce
Q 015735           82 LTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDS--GKYV  159 (401)
Q Consensus        82 ~~~~~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp~~~sd~di~~~mwkk~~--~~~v  159 (401)
                                                    |++||+...|+|++|||||+||++.++.... .+ ..+.|+..+  +..+
T Consensus        72 ------------------------------v~~q~~~~~P~d~~~r~kF~v~~~~~~~~~~-~~-~~~~~~~~k~~~~~~  119 (218)
T KOG0439|consen   72 ------------------------------VTHQPFEKSPPDFKSRHKFLIQSLKAPPPTT-RD-VVDLWKFQKETPKES  119 (218)
T ss_pred             ------------------------------EEeccCccCchhhcccceEEEEEEecCCccc-cc-hhhhccccccccccc
Confidence                                          9999998889999999999999999998722 22 357888877  8999


Q ss_pred             eeEEEEEEEeCCCCCCCcC
Q 015735          160 EEKKLRVILMSPPQSPVLL  178 (401)
Q Consensus       160 ~e~KLrVvf~~p~~~p~~~  178 (401)
                      .+.|++|.|+.|+.++...
T Consensus       120 ~~~k~~~~~~~~~~~~~~~  138 (218)
T KOG0439|consen  120 FETKLRVVFVAPTETDSVV  138 (218)
T ss_pred             cceeeEEEeeCCCCCcccc
Confidence            9999999999988775443

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PRK04406 hypothetical protein; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information
>PRK04325 hypothetical protein; Provisional Back     alignment and domain information
>PRK10404 hypothetical protein; Provisional Back     alignment and domain information
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD Back     alignment and domain information
>PRK02119 hypothetical protein; Provisional Back     alignment and domain information
>PRK02793 phi X174 lysis protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 2e-08
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 4e-08
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 1e-07
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 1e-07
2rr3_A130 Solution Structure Of The Complex Between Human Vap 2e-07
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 3  EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSII 58
          E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  II
Sbjct: 7  EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 63
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 7e-27
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 3e-25
2cri_A147 Vesicle-associated membrane protein-associated pro 1e-23
1z9l_A128 Vesicle-associated membrane protein-associated pro 3e-22
1m1s_A116 WR4; structural genomics, major sperm protein, bio 2e-17
1row_A109 SSP-19, MSP-domain protein like family member; bet 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  103 bits (258), Expect = 7e-27
 Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 50/182 (27%)

Query: 4   ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
            LL I P  EL F      +   +I L N +   VAFKV+TT+P+KY V+P+ S   P  
Sbjct: 17  PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPG- 75

Query: 63  ISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPP 122
                                                           ++ +        
Sbjct: 76  -----------------------------------------------ASIDIIVSPHGGL 88

Query: 123 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKD-SGKYVEEKKLRVILMSPPQSPVLLPRN 181
            +  +D+FLI    +   +         F K+     V E +LR   +   +   L+   
Sbjct: 89  TVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSG 148

Query: 182 GE 183
             
Sbjct: 149 PS 150
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 99.98
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.95
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.95
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 97.98
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 97.26
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 97.23
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 96.33
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 90.38
3efg_A78 Protein SLYX homolog; xanthomonas campestris PV. c 86.59
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 85.93
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=1.4e-35  Score=256.59  Aligned_cols=125  Identities=35%  Similarity=0.588  Sum_probs=115.0

Q ss_pred             CCCceEecC-eeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhcc
Q 015735            3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCH   81 (401)
Q Consensus         3 ~~lL~I~P~-EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~   81 (401)
                      +.+|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++||||||.|+|+||++++|.              
T Consensus        12 ~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~--------------   77 (147)
T 2cri_A           12 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVS--------------   77 (147)
T ss_dssp             CCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEE--------------
T ss_pred             CCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEE--------------
Confidence            369999996 99999999999999999999999999999999999999999999999999999999              


Q ss_pred             cccchhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeCCCCCCcchhhhhhccCCCCceee
Q 015735           82 LTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEE  161 (401)
Q Consensus        82 ~~~~~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp~~~sd~di~~~mwkk~~~~~v~e  161 (401)
                                                    |+|||+++. |+++|+|||+||++.+|++.++  + .++|++..+..+++
T Consensus        78 ------------------------------V~l~~~~~~-p~~~~kDKFlVqs~~~~~~~~d--~-~~~wk~~~~~~i~e  123 (147)
T 2cri_A           78 ------------------------------VMLQPFDYD-PNEKSKHKFMVQTIFAPPNISD--M-EAVWKEAKPDELMD  123 (147)
T ss_dssp             ------------------------------EEECCCCCC-TTCCSCCCEEEEEEECCTTCCC--H-HHHHHHSCTTTCEE
T ss_pred             ------------------------------EEECCCcCC-ccccCCCEEEEEEEEcCCCccc--H-HHHhhcCCCCceEE
Confidence                                          999998765 5689999999999999987543  3 68999999999999


Q ss_pred             EEEEEEEeCCCCCC
Q 015735          162 KKLRVILMSPPQSP  175 (401)
Q Consensus       162 ~KLrVvf~~p~~~p  175 (401)
                      +||||+|+.|++.+
T Consensus       124 ~kLrv~f~~p~~~~  137 (147)
T 2cri_A          124 SKLRCVFEMPNEND  137 (147)
T ss_dssp             EEEEEEEECSCCSS
T ss_pred             EEEEEEEecCCCCc
Confidence            99999999987664
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 401
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 2e-25
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 2e-23
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 5e-15
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 2e-14
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.9 bits (246), Expect = 2e-25
 Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 50/174 (28%)

Query: 4   ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
            LL I P  EL F      +   +I L N +   VAFKV+TT+P+KY V+P+ S   P  
Sbjct: 17  PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPG- 75

Query: 63  ISDFTGINCVSSLCLLCCHLTLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPP 122
                                                           ++ +        
Sbjct: 76  -----------------------------------------------ASIDIIVSPHGGL 88

Query: 123 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKD-SGKYVEEKKLRVILMSPPQSP 175
            +  +D+FLI    +   +         F K+     V E +LR   +   +  
Sbjct: 89  TVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPN 142
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 99.97
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.97
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.89
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.89
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 83.22
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.1e-31  Score=230.13  Aligned_cols=125  Identities=30%  Similarity=0.420  Sum_probs=112.3

Q ss_pred             CCceEecC-eeEEecccCceeEEEEEEEcCCCCeEEEEEeeCCCCceeeeCCceeeCCCCeEEEeeccccccchhhhccc
Q 015735            4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTGINCVSSLCLLCCHL   82 (401)
Q Consensus         4 ~lL~I~P~-EL~F~~p~~k~~t~~L~L~N~Sd~~VAFKVKTTaPkkYcVRPN~GiI~Pg~s~~I~~~~c~~~~~~~~~~~   82 (401)
                      +||.|+|. +|.|.++++++.+|.|+|+|+++++||||||||+|++|+||||.|+|.||++++|.               
T Consensus        17 ~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~---------------   81 (152)
T d1wica_          17 PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDII---------------   81 (152)
T ss_dssp             SSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEE---------------
T ss_pred             CeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEE---------------
Confidence            59999995 79999999999999999999999999999999999999999999999999999998               


Q ss_pred             ccchhhhccccchhccchhhhhhccccceEEeccCCCCCCCCCCCceEEEEEEEeCCCCCC--cchhhhhhccCCCCcee
Q 015735           83 TLLECVCHIMSLIVGICDQFFNIALLAEAVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSD--EDITSDMFAKDSGKYVE  160 (401)
Q Consensus        83 ~~~~c~c~~~s~~v~ic~~~~~i~~~~~~VtmQa~~~~Ppd~q~KDKFLVQsi~vp~~~sd--~di~~~mwkk~~~~~v~  160 (401)
                                                   |++++.    +.++|+|||+||++.+++..+.  .|+ .++|+...+..++
T Consensus        82 -----------------------------v~~~~~----~~~~~kdKFli~~~~v~~~~~~~~~d~-~~~wk~~~~~~i~  127 (152)
T d1wica_          82 -----------------------------VSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVM  127 (152)
T ss_dssp             -----------------------------EEECSS----SCCCSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCE
T ss_pred             -----------------------------EEECCC----CcccCCCcEEEEEEEeCCCCCCCccCH-HHHhhcCCcCcEE
Confidence                                         888864    3567999999999999876543  344 5899998899999


Q ss_pred             eEEEEEEEeCCCCCCCc
Q 015735          161 EKKLRVILMSPPQSPVL  177 (401)
Q Consensus       161 e~KLrVvf~~p~~~p~~  177 (401)
                      ++||||+|+.+++|+++
T Consensus       128 ~~kLkv~~~~~~~p~s~  144 (152)
T d1wica_         128 EHRLRCHTVESSKPNSL  144 (152)
T ss_dssp             EEEECBCCCCSCSSSSS
T ss_pred             EEEEEEEEeCCCCCCCc
Confidence            99999999999877654
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure