Citrus Sinensis ID: 015736

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
MDELLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREGENERFGEREANRLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWSDGGSSTAYS
cccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHcccccEEEEccccccccccccccHHHHHHHcccccEEEEEcccccccccEEEEEcHHHHHHHHHHcccccccccHHccccHHHHHHHHHHcccccccccccccccccEEEEEccccccccccccccccEEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEcccccccEEEcccEEEEEEcccccccccccc
ccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccHHccccccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEccHccccHHHccccHHHHHHHHcccEEEEEEcccccccccccEEEcHHHHHHHHHcccccccccEEEEcccHHHHcHHHHHHcEccccccccccccccEEEEEccccccccccccccccEEEEEEcEEEEEEccccccHHcccccccccccccEEccccccccccccccccccEEEEEccccEEEEccccEEEEEccccEEEEEEEEEccccccccc
mdelltpimdeespRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEqlhsgpwhsvlpVWRDAYSMACLHGAkyhyrngefkEALRVLDMGVLMGGPVLRKDLDSAIETLSLKARegenerfgereANRLVSEEFNTAKalqvlpnrslsckLVVKRSALSLEGFLseyflsgspviitdcmahwpartnwndldylkrvagdrtvpvevgknylcqdwkqelipFSQFLERIqsngssasvptyLAQHQLFDQINELrndicipdycfvgggelrslnawfgpagtvtplhhdphhniLAQVVGKKYIrlypaslseelypysetmlcnssqvdldnidetkfpkvrdlEFFDCIldegemlyippkwwhYVRSLSISFSVSfwwsdggsstays
MDELLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSlkaregenerfgereanrlvSEEFNtakalqvlpnrslsCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWSDGGSSTAYS
MDELLTPIMDEESPRLLQTISEHggyayvgmaaqaaadiraaeaardlaWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKaregenerfgereanrLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWSDGGSSTAYS
****************LQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIE**************************FNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWS*********
***LLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLS*********************************************RSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWSDGGS*****
MDELLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREGENERFGEREANRLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWSD********
***LLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKARE********************TAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWSDGG******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDELLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLxxxxxxxxxxxxxxxxxxxxxRFGEREANRLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWSDGGSSTAYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query401 2.2.26 [Sep-21-2011]
Q9CXT6414 Lysine-specific demethyla yes no 0.862 0.835 0.432 2e-78
Q497B8414 Lysine-specific demethyla yes no 0.862 0.835 0.426 4e-76
Q8N371416 Lysine-specific demethyla yes no 0.855 0.824 0.429 3e-75
B5XF11404 Lysine-specific demethyla N/A no 0.850 0.844 0.417 4e-74
B2GUS6443 Lysine-specific demethyla yes no 0.912 0.826 0.378 3e-73
Q1JP61406 Lysine-specific demethyla yes no 0.887 0.876 0.421 2e-71
A8E534406 Lysine-specific demethyla yes no 0.872 0.862 0.409 1e-68
Q55DF5448 JmjC domain-containing pr yes no 0.553 0.495 0.468 2e-57
Q54FG7474 JmjC domain-containing pr no no 0.855 0.723 0.271 2e-30
Q8BLR9349 Hypoxia-inducible factor no no 0.526 0.604 0.312 5e-21
>sp|Q9CXT6|KDM8_MOUSE Lysine-specific demethylase 8 OS=Mus musculus GN=Kdm8 PE=2 SV=1 Back     alignment and function desciption
 Score =  293 bits (749), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/361 (43%), Positives = 210/361 (58%), Gaps = 15/361 (4%)

Query: 39  IRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGA----KYHYRNGEFKEALRVLD 94
           ++A+EA  D +WE+L++GPW  V   WR  YS  CL  A    +   +     EALRV D
Sbjct: 62  LQASEAVLDYSWEKLNTGPWRDVDKEWRRVYSFGCLLKALCLCQAPQKATTVVEALRVCD 121

Query: 95  MGVLMGGPVLRKDLDSAIETLSLKAREGENERFGEREANRLVSE-EFNTAKALQVLPNRS 153
           MG+LMG  +L   L   +  L      G+    G  +      + + + + A  V+  R 
Sbjct: 122 MGLLMGAAILEDILLKVVAVLQTHQLPGKQPARGPHQDQPATKKAKCDASPAPDVMLER- 180

Query: 154 LSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPV 213
               +V +     L+ F   + + G PVI+     HWP    W+ L Y++ +AG RTVPV
Sbjct: 181 ----MVPRLRCPPLQYFKQHFLVPGRPVILEGVADHWPCMKKWS-LQYIQEIAGCRTVPV 235

Query: 214 EVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYC 273
           EVG  Y  +DW Q L+   +F+++     S A    YLAQHQLFDQI EL+ DI IPDYC
Sbjct: 236 EVGSRYTDEDWSQTLMTVDEFIQKFIL--SEAKDVGYLAQHQLFDQIPELKRDISIPDYC 293

Query: 274 FVGGGELR--SLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSET 331
            +G GE    ++NAWFGP GT++PLH DP  N L QV+G+KYIRLY    SE +YP+   
Sbjct: 294 CLGNGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVLGRKYIRLYSPQESEAVYPHETH 353

Query: 332 MLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWW 391
           +L N+SQVD++N D  KFPK  +  F  CIL  G+ L+IP K+WHYVRSL +SFSVSFWW
Sbjct: 354 ILHNTSQVDVENPDLEKFPKFTEAPFLSCILSPGDTLFIPAKYWHYVRSLDLSFSVSFWW 413

Query: 392 S 392
           S
Sbjct: 414 S 414
Histone demethylase required for G2/M phase cell cycle progression. Specifically demethylates dimethylated 'Lys-36' (H3K36me2) of histone H3, an epigenetic repressive mark, thereby acting as a transcription activator. Regulates expression of CCNA1 (cyclin-A1).
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2EC: 7
>sp|Q497B8|KDM8_RAT Lysine-specific demethylase 8 OS=Rattus norvegicus GN=Kdm8 PE=2 SV=1 Back     alignment and function description
>sp|Q8N371|KDM8_HUMAN Lysine-specific demethylase 8 OS=Homo sapiens GN=KDM8 PE=1 SV=1 Back     alignment and function description
>sp|B5XF11|KDM8_SALSA Lysine-specific demethylase 8 OS=Salmo salar GN=kdm8 PE=2 SV=1 Back     alignment and function description
>sp|B2GUS6|KDM8_XENTR Lysine-specific demethylase 8 OS=Xenopus tropicalis GN=kdm8 PE=2 SV=1 Back     alignment and function description
>sp|Q1JP61|KDM8_BOVIN Lysine-specific demethylase 8 OS=Bos taurus GN=KDM8 PE=2 SV=1 Back     alignment and function description
>sp|A8E534|KDM8_DANRE Lysine-specific demethylase 8 OS=Danio rerio GN=kdm8 PE=2 SV=1 Back     alignment and function description
>sp|Q55DF5|JMJCD_DICDI JmjC domain-containing protein D OS=Dictyostelium discoideum GN=jcdD PE=4 SV=1 Back     alignment and function description
>sp|Q54FG7|JMJCF_DICDI JmjC domain-containing protein F OS=Dictyostelium discoideum GN=jcdF PE=4 SV=1 Back     alignment and function description
>sp|Q8BLR9|HIF1N_MOUSE Hypoxia-inducible factor 1-alpha inhibitor OS=Mus musculus GN=Hif1an PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
224057513413 predicted protein [Populus trichocarpa] 0.987 0.958 0.774 1e-180
255544780416 transcription factor, putative [Ricinus 0.992 0.956 0.751 1e-176
359478758411 PREDICTED: lysine-specific demethylase 8 0.985 0.961 0.738 1e-175
356541175 575 PREDICTED: lysine-specific demethylase 8 0.982 0.685 0.746 1e-168
297830774429 transcription factor jumonji domain-cont 0.972 0.909 0.711 1e-167
18402759418 transcription factor jumonji (jmjC) doma 0.987 0.947 0.713 1e-167
339896187414 jmjC domain-containing histone demethyla 0.977 0.946 0.708 1e-166
30685945429 transcription factor jumonji (jmjC) doma 0.987 0.923 0.696 1e-165
356541868413 PREDICTED: lysine-specific demethylase 8 0.982 0.953 0.741 1e-163
449476026413 PREDICTED: lysine-specific demethylase 8 0.962 0.934 0.717 1e-162
>gi|224057513|ref|XP_002299244.1| predicted protein [Populus trichocarpa] gi|222846502|gb|EEE84049.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 309/399 (77%), Positives = 352/399 (88%), Gaps = 3/399 (0%)

Query: 4   LLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAA-DIRAAEAARDLAWEQLHSGPWHSVL 62
           L TP +D ES  LLQTIS HGGYAYV M+  AA+ D RAAEAAR++AWEQLHSGPWHSVL
Sbjct: 14  LTTPTLDAESSNLLQTISSHGGYAYVSMSTLAASGDFRAAEAAREMAWEQLHSGPWHSVL 73

Query: 63  PVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREG 122
           P WRDAYSMACLH AK+HYRNGEFKE+LRVLD+G++MGG +L+KDL+SAIE ++ K+RE 
Sbjct: 74  PAWRDAYSMACLHVAKFHYRNGEFKESLRVLDLGLIMGGVLLKKDLESAIEIVTAKSREK 133

Query: 123 ENERFGEREANRLVSE--EFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSP 180
           E+E F +    + V E  EF+  + L+VLP +SLS K+VVK+S LSLEGFL E+FLSGSP
Sbjct: 134 ESEGFEKGPKCKFVEEGDEFDKEEVLRVLPEKSLSSKIVVKKSGLSLEGFLREHFLSGSP 193

Query: 181 VIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQS 240
           VII+DCMAHWPART WND+DYLKRVAGDRTVPVEVGKNYLCQ+WKQELI FS+FLE+IQS
Sbjct: 194 VIISDCMAHWPARTKWNDMDYLKRVAGDRTVPVEVGKNYLCQEWKQELITFSEFLEKIQS 253

Query: 241 NGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDP 300
           N SS++VPTYLAQHQLFDQINELR DICIPDYC  GGGELRSLNAWFGPAGTVTPLHHDP
Sbjct: 254 NDSSSAVPTYLAQHQLFDQINELRKDICIPDYCCAGGGELRSLNAWFGPAGTVTPLHHDP 313

Query: 301 HHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDC 360
           HHNILAQVVGKKY+RLY +S+SEELYPY+ETMLCNSSQVDLDNID+ ++PKV DLEF DC
Sbjct: 314 HHNILAQVVGKKYVRLYTSSVSEELYPYNETMLCNSSQVDLDNIDDGQYPKVHDLEFLDC 373

Query: 361 ILDEGEMLYIPPKWWHYVRSLSISFSVSFWWSDGGSSTA 399
           IL+EGEMLYIPPKWWHYVRSL+ISFSVSFWWS+  SS A
Sbjct: 374 ILEEGEMLYIPPKWWHYVRSLTISFSVSFWWSNSESSDA 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544780|ref|XP_002513451.1| transcription factor, putative [Ricinus communis] gi|223547359|gb|EEF48854.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359478758|ref|XP_003632166.1| PREDICTED: lysine-specific demethylase 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541175|ref|XP_003539056.1| PREDICTED: lysine-specific demethylase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|297830774|ref|XP_002883269.1| transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329109|gb|EFH59528.1| transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18402759|ref|NP_566667.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi|9294408|dbj|BAB02489.1| unnamed protein product [Arabidopsis thaliana] gi|21536708|gb|AAM61040.1| unknown [Arabidopsis thaliana] gi|332642905|gb|AEE76426.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|339896187|gb|AEK21797.1| jmjC domain-containing histone demethylases [Brassica rapa subsp. campestris] Back     alignment and taxonomy information
>gi|30685945|ref|NP_850617.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi|20147203|gb|AAM10317.1| AT3g20810/MOE17_10 [Arabidopsis thaliana] gi|21928039|gb|AAM78048.1| AT3g20810/MOE17_10 [Arabidopsis thaliana] gi|332642904|gb|AEE76425.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356541868|ref|XP_003539394.1| PREDICTED: lysine-specific demethylase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|449476026|ref|XP_004154619.1| PREDICTED: lysine-specific demethylase 8-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
TAIR|locus:2091861429 JMJD5 "AT3G20810" [Arabidopsis 0.987 0.923 0.648 4.3e-141
UNIPROTKB|F1NW34389 F1NW34 "Uncharacterized protei 0.561 0.578 0.532 1.2e-73
RGD|1304823414 Kdm8 "lysine (K)-specific deme 0.556 0.538 0.517 1.2e-71
UNIPROTKB|B2GUS6443 kdm8 "Lysine-specific demethyl 0.548 0.496 0.493 4.2e-71
MGI|MGI:1924285414 Kdm8 "lysine (K)-specific deme 0.835 0.809 0.428 4.3e-70
UNIPROTKB|F1RFF8414 KDM8 "Uncharacterized protein" 0.558 0.541 0.519 1.2e-69
UNIPROTKB|E2RER6414 KDM8 "Uncharacterized protein" 0.556 0.538 0.517 2e-69
UNIPROTKB|Q8N371416 KDM8 "Lysine-specific demethyl 0.827 0.798 0.428 4.4e-68
UNIPROTKB|Q1JP61406 KDM8 "Lysine-specific demethyl 0.830 0.820 0.428 1.5e-67
UNIPROTKB|B5XF11404 kdm8 "Lysine-specific demethyl 0.835 0.829 0.423 2.4e-67
TAIR|locus:2091861 JMJD5 "AT3G20810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
 Identities = 267/412 (64%), Positives = 304/412 (73%)

Query:     4 LLTPIMDEESPRLLQTIS-EHXXXXXXXXXXXXXXXXXXXXXXXXXXWEQLHSGPWHSVL 62
             L TP +D ES  LLQ+IS E                           WEQLHSGPWHSVL
Sbjct:    17 LPTPTLDAESQTLLQSISAEGGYAYARMAVLAVAGDQSAAEAARDMAWEQLHSGPWHSVL 76

Query:    63 PVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDL-DSA--IETLSLKX 119
             PVWRDAYSMACLH AK H+  GEF EAL  LDMG++MGG +LRKDL DS   + + + K 
Sbjct:    77 PVWRDAYSMACLHVAKIHFAAGEFGEALGALDMGLIMGGMLLRKDLHDSVLLVSSEARKM 136

Query:   120 XXXXXXXXXXXXXXXLVSE---EFNTAK---------ALQVLPNRSLSCKLVVKRSALSL 167
                            LV E   + N  +          L++LP RSL+CK V KRS LSL
Sbjct:   137 TKSLEEASGDFKGERLVPEVPVDVNEVRHVLANLQLLVLKILPCRSLTCKRVEKRSGLSL 196

Query:   168 EGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQE 227
             EGFL +Y+L G+PV+IT+ MAHWPART WN LDYL  VAG+RTVPVEVGKNYLC DWKQE
Sbjct:   197 EGFLRDYYLPGTPVVITNSMAHWPARTKWNHLDYLNAVAGNRTVPVEVGKNYLCSDWKQE 256

Query:   228 LIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWF 287
             L+ FS+FLER+++N SS   PTYLAQH LFDQINELR+DICIPDYCFVGGGEL+SLNAWF
Sbjct:   257 LVTFSKFLERMRTNKSSPMEPTYLAQHPLFDQINELRDDICIPDYCFVGGGELQSLNAWF 316

Query:   288 GPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDET 347
             GPAGTVTPLHHDPHHNILAQVVGKKYIRLYP+ L +ELYPYSETMLCNSSQVDLDNIDET
Sbjct:   317 GPAGTVTPLHHDPHHNILAQVVGKKYIRLYPSFLQDELYPYSETMLCNSSQVDLDNIDET 376

Query:   348 KFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWSDGGSSTA 399
             +FPK  +LEF DCIL+EGEMLYIPPKWWHYVRSL++S SVSFWWS+   S++
Sbjct:   377 EFPKAMELEFMDCILEEGEMLYIPPKWWHYVRSLTMSLSVSFWWSNEAESSS 428
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0007623 "circadian rhythm" evidence=IMP
GO:0042752 "regulation of circadian rhythm" evidence=IMP
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
UNIPROTKB|F1NW34 F1NW34 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1304823 Kdm8 "lysine (K)-specific demethylase 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B2GUS6 kdm8 "Lysine-specific demethylase 8" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
MGI|MGI:1924285 Kdm8 "lysine (K)-specific demethylase 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFF8 KDM8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RER6 KDM8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N371 KDM8 "Lysine-specific demethylase 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q1JP61 KDM8 "Lysine-specific demethylase 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B5XF11 kdm8 "Lysine-specific demethylase 8" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8N371KDM8_HUMAN1, ., 1, 4, ., 1, 1, ., 2, 70.42970.85530.8245yesno
Q9CXT6KDM8_MOUSE1, ., 1, 4, ., 1, 1, ., 2, 70.43210.86280.8357yesno
A8E534KDM8_DANRE1, ., 1, 4, ., 1, 1, ., 2, 70.40970.87280.8620yesno
B2GUS6KDM8_XENTR1, ., 1, 4, ., 1, 1, ., 2, 70.37880.91270.8261yesno
Q1JP61KDM8_BOVIN1, ., 1, 4, ., 1, 1, ., 2, 70.42130.88770.8768yesno
Q497B8KDM8_RAT1, ., 1, 4, ., 1, 1, ., 2, 70.42650.86280.8357yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
pfam13621247 pfam13621, Cupin_8, Cupin-like domain 3e-61
pfam08007319 pfam08007, Cupin_4, Cupin superfamily protein 1e-06
>gnl|CDD|222269 pfam13621, Cupin_8, Cupin-like domain Back     alignment and domain information 
 Score =  197 bits (504), Expect = 3e-61
 Identities = 81/240 (33%), Positives = 111/240 (46%), Gaps = 16/240 (6%)

Query: 170 FLSEYFLSGSPVIITDCMAHWPARTNWND-LDYLKRVAGDRTVPVEVGKN------YLCQ 222
           F  EY     PV++      WPA   W D LDYLK   GD  V VEV         +   
Sbjct: 4   FFREYVAKRKPVVLKGAAKDWPAVKKWTDALDYLKEKYGDVEVSVEVTPPGRADRFFYND 63

Query: 223 DW-----KQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQI-NELRNDICIPDYCFVG 276
           D      K+E +PF  FL+ +++     + P    Q    D     LR D  +P      
Sbjct: 64  DLSGVNFKEERMPFKDFLDLLRAGSDQETPPYLYLQSSNLDSEFPGLREDNDLPLAPEAF 123

Query: 277 GGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELY--PYSETMLC 334
           G   +++N W G  GT T LH+D + N+   V G+K   L+P S    LY  P   T   
Sbjct: 124 GKLPQAVNLWIGNGGTTTSLHYDAYENLYCVVSGRKRFTLFPPSQVPNLYPGPLDRTGGQ 183

Query: 335 NSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLS-ISFSVSFWWSD 393
             S VD DN D  KFP+ +D +     L+ G+ LYIP  WWH+VRSL   + +V++W+  
Sbjct: 184 PFSLVDPDNPDLEKFPRFKDAKALVAELEPGDALYIPAGWWHHVRSLDDFNIAVNYWFDP 243

This cupin like domain shares similarity to the JmjC domain. Length = 247
>gnl|CDD|219693 pfam08007, Cupin_4, Cupin superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 401
KOG2132355 consensus Uncharacterized conserved protein, conta 100.0
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 100.0
KOG2130 407 consensus Phosphatidylserine-specific receptor Ptd 100.0
KOG2508 437 consensus Predicted phospholipase [Lipid transport 99.95
KOG2131 427 consensus Uncharacterized conserved protein, conta 99.9
COG2850 383 Uncharacterized conserved protein [Function unknow 99.73
PF08007319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 99.7
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 99.27
KOG3706 629 consensus Uncharacterized conserved protein [Funct 99.1
KOG1633 776 consensus F-box protein JEMMA and related proteins 98.33
KOG2132355 consensus Uncharacterized conserved protein, conta 98.27
KOG1356889 consensus Putative transcription factor 5qNCA, con 97.96
COG2140209 Thermophilic glucose-6-phosphate isomerase and rel 97.53
PF00190144 Cupin_1: Cupin; InterPro: IPR006045 This family re 97.07
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 96.41
PRK04190191 glucose-6-phosphate isomerase; Provisional 96.35
TIGR03037159 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase 96.27
PF06560182 GPI: Glucose-6-phosphate isomerase (GPI); InterPro 96.27
PRK13264177 3-hydroxyanthranilate 3,4-dioxygenase; Provisional 95.94
smart0055857 JmjC A domain family that is part of the cupin met 95.88
TIGR03404367 bicupin_oxalic bicupin, oxalate decarboxylase fami 95.59
smart00835146 Cupin_1 Cupin. This family represents the conserve 95.16
TIGR03404 367 bicupin_oxalic bicupin, oxalate decarboxylase fami 94.67
COG1898173 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela 94.27
PF06052151 3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte 94.03
PF02041167 Auxin_BP: Auxin binding protein; InterPro: IPR0005 93.39
COG1917131 Uncharacterized conserved protein, contains double 93.3
TIGR01221176 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en 93.13
PF05523131 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 92.3
COG0662127 {ManC} Mannose-6-phosphate isomerase [Carbohydrate 92.1
PRK09943185 DNA-binding transcriptional repressor PuuR; Provis 91.45
TIGR02272 335 gentisate_1_2 gentisate 1,2-dioxygenase. This fami 91.44
COG4101142 Predicted mannose-6-phosphate isomerase [Carbohydr 91.36
PF00908176 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer 90.42
PLN00212493 glutelin; Provisional 88.19
TIGR02466201 conserved hypothetical protein. This family consis 88.12
PF02311136 AraC_binding: AraC-like ligand binding domain; Int 85.77
KOG0958 690 consensus DNA damage-responsive repressor GIS1/RPH 85.69
PRK13290125 ectC L-ectoine synthase; Reviewed 85.05
PF0931382 DUF1971: Domain of unknown function (DUF1971); Int 82.56
TIGR03214 260 ura-cupin putative allantoin catabolism protein. T 82.32
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-69  Score=513.83  Aligned_cols=331  Identities=45%  Similarity=0.745  Sum_probs=281.3

Q ss_pred             HHHHHHhhhccccCCCCCchHHHHHHHHHHHHHHhhccCCcHHHHHHHHHhhhccCCCcchhHHHHHHHHhhhhhhcCCC
Q 015736           45 ARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREGEN  124 (401)
Q Consensus        45 ~~~~a~e~l~~g~~~~v~~~wr~~y~~~~l~~~~~~~~~~~~~~~~~~ld~~li~g~~~~~~~~~~~~~~~~~~~~~~~~  124 (401)
                      ++++||||||+|||++|+..||++|+++|+++++..++++.+.+|+| ||||++||+......    ++.+++....+..
T Consensus        22 ~l~~awe~l~tg~~~~v~~~wr~~y~~~c~~~~~~~~~~~~~~~al~-~D~gllmg~~~~~d~----~l~va~~~~~~~~   96 (355)
T KOG2132|consen   22 ALDPAWEKLNTGHWSFVDRVWRRLYAIACLAKALIEFQAPLVYAALK-LDMGLLMGNIGLGDS----LLKVASELKFGYY   96 (355)
T ss_pred             ccCchhhhhccCccccCCchHHHHHHHHHHHHHHhhcccchhHHHHh-hCHHHHhhchhcchH----HHHHHHHhhccCc
Confidence            58999999999999999999999999999999999999999999999 999999998765221    1222222211111


Q ss_pred             cccccccccccccc-ccchhhhhccCCCCCcCCCcccccCCCCHHHHHHhhhcCCCcEEEecCCCCCccCCCCCcHHHHH
Q 015736          125 ERFGEREANRLVSE-EFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLK  203 (401)
Q Consensus       125 ~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~i~r~~~lS~e~F~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~yL~  203 (401)
                      .+..-.  ...-.. +.....+...+|.... +..+++.+.+++++|..+++.+++|++++|.+.||||.++|+ ++|+.
T Consensus        97 ~~~~~~--~~~~~~p~~e~~~~~~~ip~~~~-~~~~~~~~~~~l~~~l~d~~~~~~p~~~l~~~~hwpa~~kw~-l~~l~  172 (355)
T KOG2132|consen   97 SDKPAA--VALNFKPNREENKVHEFIPKVQL-EIDVPGEDRLSLQEFLNDTVGRGTPVILLGFNWHWPAIQKWS-LGYLQ  172 (355)
T ss_pred             ccchhh--hhccCCCCccccccccccchhhh-hhhhccccchHHHHHHHHhhcCCCceEEecccccchHhhhcc-hhHHH
Confidence            000000  000000 1111223444555333 567888899999999999999999999999999999999995 99999


Q ss_pred             HHhCCceEEEEeCcccccCCceeeecCHHHHHHHHHhCCCCCCCCceeeccchhhhhHhhhccCCCCCccccCCccc--c
Q 015736          204 RVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGEL--R  281 (401)
Q Consensus       204 ~~~G~~~V~ve~g~~y~~~~w~~~~mt~~eFl~~~~~~~~~~~~~~YL~q~~l~~~~p~L~~Di~~P~~~~~~~~~~--~  281 (401)
                      +..|.|+|+||+|.+|.+.+|.|..|++.+|+.++....  +..++|++||.+|+|+|+++.||.+||||+..+.+.  .
T Consensus       173 ~va~~rTvpvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~--p~~~~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~~~~v  250 (355)
T KOG2132|consen  173 QVAGNRTVPVEVGSTYADEDWSQNLMTQIKGIKRCILFE--PRECLYLAQHHLFDQIPELKFDISIPDYCSFPNFENEVV  250 (355)
T ss_pred             hcccceeeeeecccccchhHHHhhhHHHhhhhhhhhcCC--ccccchhhhhhhhccchhhhhccCCCceeecCCCCcccc
Confidence            999999999999999999999999999999999998876  457899999999999999999999999998766554  6


Q ss_pred             ccceeeccCCCCCccccccCCceeEEEeeeeEEEEecCCCCCccccCcccccCCCCcccCCCcccccCCCCCCCceEEEE
Q 015736          282 SLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCI  361 (401)
Q Consensus       282 ~~~~W~Gp~gt~splH~D~~~n~l~qV~G~K~~~L~pP~~~~~Lyp~~~~~~~ntS~vD~~~~d~~~fP~~~~a~~~e~i  361 (401)
                      ..++|+||+||+||+|+|++||+++||.|+|+|+|++|..++.+||+...++. |||||+++||++.||+|++++.++|+
T Consensus       251 ~~~~w~GpaGtV~pih~dp~hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~-tsqvdvenPdlk~fp~~~k~~~l~~l  329 (355)
T KOG2132|consen  251 DINAWIGPAGTVLPIHMDPWHNILSQVFGRKRIRLYPPEDSGALYPTDTYLLE-TSQVDVENPDLKAFPKFAKARFLDCL  329 (355)
T ss_pred             ceeEEeccCCceeccccccccceeeeeecceEEEEecCcccCCCCCccchhhc-ccccccCCCChhhhhHHHHHHHHHHh
Confidence            88999999999999999999999999999999999999999999999877655 99999999999999999999999999


Q ss_pred             EcCCCEEEeCCCceEEEEecCceEEE
Q 015736          362 LDEGEMLYIPPKWWHYVRSLSISFSV  387 (401)
Q Consensus       362 L~pGD~LyIP~gWwH~V~sl~~siSV  387 (401)
                      |+|||+||||+.|||+|++++.|+|+
T Consensus       330 L~pGe~L~iP~kwwhyvrs~d~s~s~  355 (355)
T KOG2132|consen  330 LEPGEALFIPPKWWHYVRSLDKSFSV  355 (355)
T ss_pred             cCCchhccccHHHhhhhhhccccccC
Confidence            99999999999999999999999875

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism] Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>COG2850 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>KOG3706 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] Back     alignment and domain information
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel) Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information
>PRK04190 glucose-6-phosphate isomerase; Provisional Back     alignment and domain information
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase Back     alignment and domain information
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5 Back     alignment and domain information
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>smart00835 Cupin_1 Cupin Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1 Back     alignment and domain information
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER) Back     alignment and domain information
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase Back     alignment and domain information
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase [] Back     alignment and domain information
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional Back     alignment and domain information
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase Back     alignment and domain information
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5 Back     alignment and domain information
>PLN00212 glutelin; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC Back     alignment and domain information
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK13290 ectC L-ectoine synthase; Reviewed Back     alignment and domain information
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins Back     alignment and domain information
>TIGR03214 ura-cupin putative allantoin catabolism protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
3uyj_A248 Crystal Structure Of Jmjd5 Catalytic Core Domain In 5e-64
4aap_A239 Crystal Structure Of Jmjd5 Domain Of Human Lysine-S 6e-64
4gjz_A235 Jmjd5 In Complex With 2-Oxoglutarate Length = 235 1e-63
4gjy_A235 Jmjd5 In Complex With N-Oxalylglycine Length = 235 4e-63
1iz3_A349 Dimeric Structure Of Fih (Factor Inhibiting Hif) Le 2e-20
3kcx_A335 Factor Inhibiting Hif-1 Alpha In Complex With Clioq 2e-20
1h2k_A349 Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 2e-20
1mze_A351 Human Factor Inhibiting Hif (Fih1) Length = 351 2e-20
2y0i_A352 Factor Inhibiting Hif-1 Alpha In Complex With Tanky 2e-20
2xum_A349 Factor Inhibiting Hif (Fih) Q239h Mutant In Complex 2e-20
3d8c_A349 Factor Inhibiting Hif-1 Alpha D201g Mutant In Compl 1e-19
2ilm_A349 Factor Inhibiting Hif-1 Alpha D201a Mutant In Compl 1e-19
3al5_A338 Crystal Structure Of Human Tyw5 Length = 338 6e-12
3ld8_A334 Structure Of Jmjd6 And Fab Fragments Length = 334 1e-05
3k2o_A336 Structure Of An Oxygenase Length = 336 6e-05
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In Complex With Nickle And Alpha-Kg Length = 248 Back     alignment and structure 
Iteration: 1

 Score =  241 bits (615), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 121/249 (48%), Positives = 161/249 (64%), Gaps = 6/249 (2%)
Query: 146 LQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRV 205
           + ++P+  L  K V +    SL+ F  ++ + G PVI+     HWP    W+ L+Y++ +
Sbjct: 4   MGLIPDVKLE-KTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEI 61
Query: 206 AGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRN 265
           AG RTVPVEVG  Y  ++W Q L+  ++F+ +   N        YLAQHQLFDQI EL+ 
Sbjct: 62  AGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDV--GYLAQHQLFDQIPELKQ 119
Query: 266 DICIPDYCFVGGGELR--SLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSE 323
           DI IPDYC +G GE    ++NAWFGP GT++PLH DP  N L QV+G+KYIRLY    S 
Sbjct: 120 DISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESG 179
Query: 324 ELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSI 383
            LYP+   +L N+SQVD++N D  KFPK     F  CIL  GE+L+IP K+WHYVR+L +
Sbjct: 180 ALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDL 239
Query: 384 SFSVSFWWS 392
           SFSVSFWWS
Sbjct: 240 SFSVSFWWS 248
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine (Nog) Length = 239 Back     alignment and structure
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate Length = 235 Back     alignment and structure
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine Length = 235 Back     alignment and structure
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif) Length = 349 Back     alignment and structure
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol Length = 335 Back     alignment and structure
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha Fragment Peptide Length = 349 Back     alignment and structure
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1) Length = 351 Back     alignment and structure
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2 (Tnks2) Fragment Peptide (21-Mer) Length = 352 Back     alignment and structure
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer) Length = 349 Back     alignment and structure
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer Length = 349 Back     alignment and structure
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer Length = 349 Back     alignment and structure
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5 Length = 338 Back     alignment and structure
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments Length = 334 Back     alignment and structure
>pdb|3K2O|A Chain A, Structure Of An Oxygenase Length = 336 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
3uyj_A248 Lysine-specific demethylase 8; jellyroll-like all 7e-93
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 1e-79
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 9e-77
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 1e-65
1vrb_A342 Putative asparaginyl hydroxylase; 2636534, structu 7e-41
3kv9_A 397 JMJC domain-containing histone demethylation prote 2e-25
4diq_A 489 Lysine-specific demethylase NO66; structural genom 4e-20
3pua_A 392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 1e-17
3k3o_A 371 PHF8, PHD finger protein 8; histone demethylase, c 4e-16
2xdv_A 442 MYC-induced nuclear antigen; ribosome biogenesis, 1e-11
2yu1_A 451 JMJC domain-containing histone demethylation PROT; 2e-10
3kv5_D 488 JMJC domain-containing histone demethylation prote 2e-08
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 4e-08
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold, nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB: 4aap_A* Length = 248 Back     alignment and structure
 Score =  278 bits (712), Expect = 7e-93
 Identities = 118/236 (50%), Positives = 154/236 (65%), Gaps = 5/236 (2%)

Query: 159 VVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKN 218
           V +    SL+ F  ++ + G PVI+     HWP    W+ L+Y++ +AG RTVPVEVG  
Sbjct: 16  VPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEIAGCRTVPVEVGSR 74

Query: 219 YLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGG 278
           Y  ++W Q L+  ++F+ +   N        YLAQHQLFDQI EL+ DI IPDYC +G G
Sbjct: 75  YTDEEWSQTLMTVNEFISKYIVNEPRD--VGYLAQHQLFDQIPELKQDISIPDYCSLGDG 132

Query: 279 ELR--SLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSETMLCNS 336
           E    ++NAWFGP GT++PLH DP  N L QV+G+KYIRLY    S  LYP+   +L N+
Sbjct: 133 EEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNT 192

Query: 337 SQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWS 392
           SQVD++N D  KFPK     F  CIL  GE+L+IP K+WHYVR+L +SFSVSFWWS
Sbjct: 193 SQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS 248
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Length = 338 Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Length = 349 Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336 Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Length = 342 Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397 Back     alignment and structure
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Length = 489 Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392 Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371 Back     alignment and structure
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} Length = 442 Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 100.0
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 100.0
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 100.0
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 100.0
2yu1_A 451 JMJC domain-containing histone demethylation PROT; 100.0
3k3o_A 371 PHF8, PHD finger protein 8; histone demethylase, c 99.98
3kv5_D 488 JMJC domain-containing histone demethylation prote 99.98
3kv9_A 397 JMJC domain-containing histone demethylation prote 99.98
1vrb_A342 Putative asparaginyl hydroxylase; 2636534, structu 99.97
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 99.97
3pua_A 392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 99.97
2xdv_A 442 MYC-induced nuclear antigen; ribosome biogenesis, 99.91
4diq_A 489 Lysine-specific demethylase NO66; structural genom 99.88
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 99.83
2ypd_A392 Probable JMJC domain-containing histone demethyla 99.48
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 98.51
3avr_A 531 Lysine-specific demethylase 6A; cupin superfamily, 98.41
4ask_A 510 Lysine-specific demethylase 6B; oxidoreductase, KD 97.57
3dxt_A354 JMJC domain-containing histone demethylation PROT; 97.37
2ox0_A381 JMJC domain-containing histone demethylation PROT; 96.55
3opt_A373 DNA damage-responsive transcriptional repressor R; 96.52
1x82_A190 Glucose-6-phosphate isomerase; cupin superfamily, 96.2
1dgw_A178 Canavalin; duplicated swiss-roll beta barrels, loo 96.08
1fi2_A201 Oxalate oxidase, germin; beta-jellyroll, oxidoredu 96.04
3fz3_A531 Prunin; TREE NUT allergen, allergy, amandin, almon 96.02
2e9q_A459 11S globulin subunit beta; cucubitin, pumpkin SEED 95.97
3c3v_A510 Arachin ARAH3 isoform; peanut allergen, allergy, g 95.84
3ksc_A496 LEGA class, prolegumin; PEA prolegumin, 11S SEED s 95.78
1fxz_A476 Glycinin G1; proglycinin, legumin, SEED storage pr 95.72
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 95.48
1v70_A105 Probable antibiotics synthesis protein; structural 95.45
2gm6_A208 Cysteine dioxygenase type I; structural genomics, 95.4
2vqa_A361 SLL1358 protein, MNCA; periplasmic binding protein 95.39
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 95.38
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 95.27
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 95.26
2vqa_A 361 SLL1358 protein, MNCA; periplasmic binding protein 95.25
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 95.24
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 95.23
3kgl_A466 Cruciferin; 11S SEED globulin, rapeseed, SEED stor 95.22
1yfu_A174 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid 95.21
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 95.18
1zvf_A176 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b 95.13
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 95.13
3h8u_A125 Uncharacterized conserved protein with double-STR 95.1
2d5f_A493 Glycinin A3B4 subunit; soybean, globulin, 11S,SEED 95.06
2d40_A354 Z3393, putative gentisate 1,2-dioxygenase; gentisi 95.04
3st7_A369 Capsular polysaccharide synthesis enzyme CAP5F; ro 95.04
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 95.01
3ejk_A174 DTDP sugar isomerase; YP_390184.1, structural geno 94.92
2o8q_A134 Hypothetical protein; cpuin-like fold, structural 94.82
1lr5_A163 Auxin binding protein 1; beta jellyroll, double st 94.81
3bu7_A394 Gentisate 1,2-dioxygenase; cupin domain, oxidoredu 94.8
3qac_A465 11S globulin SEED storage protein; 11S SEED storag 94.8
3lag_A98 Uncharacterized protein RPA4178; functionally unkn 94.74
1j58_A 385 YVRK protein; cupin, decarboxyklase, oxalate, mang 94.74
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 94.72
2b8m_A117 Hypothetical protein MJ0764; structural genomics, 94.68
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 94.61
2oa2_A148 BH2720 protein; 10175341, structural genomics, joi 94.6
4i4a_A128 Similar to unknown protein; structural genomics, P 94.48
3nw4_A 368 Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc 94.42
3lwc_A119 Uncharacterized protein; structural genomics, unkn 94.4
3l2h_A162 Putative sugar phosphate isomerase; AFE_0303, stru 94.34
2phl_A397 Phaseolin; plant SEED storage protein(vicilin); HE 94.24
2y0o_A175 Probable D-lyxose ketol-isomerase; carbohydrate me 94.08
3i7d_A163 Sugar phosphate isomerase; YP_168127.1, structural 94.02
3nw4_A368 Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc 94.01
1uij_A416 Beta subunit of beta conglycinin; double-stranded 93.95
1uij_A 416 Beta subunit of beta conglycinin; double-stranded 93.81
2cav_A445 Protein (canavalin); vicilin, 7S SEED protein, dom 93.73
2opk_A112 Hypothetical protein; putative mannose-6-phosphate 93.59
2ea7_A434 7S globulin-1; beta barrel, cupin superfamily, pla 93.46
3bu7_A 394 Gentisate 1,2-dioxygenase; cupin domain, oxidoredu 93.44
3rns_A 227 Cupin 2 conserved barrel domain protein; structura 93.38
2xlg_A239 SLL1785 protein, CUCA; metal binding protein, cupi 93.38
2q30_A110 Uncharacterized protein; double-stranded beta-heli 93.36
3cew_A125 Uncharacterized cupin protein; all beta-protein, j 93.34
1j58_A385 YVRK protein; cupin, decarboxyklase, oxalate, mang 93.29
2ea7_A 434 7S globulin-1; beta barrel, cupin superfamily, pla 93.18
3d82_A102 Cupin 2, conserved barrel domain protein; structur 93.09
3h7j_A243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 93.07
3uss_A211 Putative uncharacterized protein; cupin, three his 93.0
2qnk_A 286 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol 92.88
3ryk_A205 DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat 92.86
3h7j_A 243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 92.8
1y3t_A 337 Hypothetical protein YXAG; BI cupin, dioxygenase, 92.78
1nxm_A197 DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell 92.77
2d40_A 354 Z3393, putative gentisate 1,2-dioxygenase; gentisi 92.72
3eqe_A171 Putative cystein deoxygenase; YUBC, SR112, NESG, s 92.7
1o4t_A133 Putative oxalate decarboxylase; double-stranded be 92.45
2bnm_A198 Epoxidase; oxidoreductase, cupin, HTH, cation-depe 92.34
1wlt_A196 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 92.08
3es1_A172 Cupin 2, conserved barrel domain protein; YP_00116 92.04
1dzr_A183 DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 91.94
1ep0_A185 DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race 91.93
2ixk_A184 DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l 91.86
1vj2_A126 Novel manganese-containing cupin TM1459; structura 91.57
2f4p_A147 Hypothetical protein TM1010; double-stranded beta- 91.52
1y9q_A192 Transcriptional regulator, HTH_3 family; transcrip 91.45
1o5u_A101 Novel thermotoga maritima enzyme TM1112; cupin, st 91.27
1oi6_A205 PCZA361.16; epimerase, vancomycin group antibiotic 91.11
2c0z_A216 NOVW; isomerase, epimerase, antibiotic biosynthesi 91.1
1y3t_A337 Hypothetical protein YXAG; BI cupin, dioxygenase, 91.06
1upi_A225 DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat 90.93
2pa7_A141 DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug 90.85
2cav_A 445 Protein (canavalin); vicilin, 7S SEED protein, dom 90.85
4b29_A217 Dimethylsulfoniopropionate lyase; hydrolase, dimet 90.59
3eln_A200 Cysteine dioxygenase type 1; peroxysulfenate, non- 90.55
3rns_A227 Cupin 2 conserved barrel domain protein; structura 90.18
1juh_A 350 Quercetin 2,3-dioxygenase; cupin, glycoprotein, be 89.66
4axo_A151 EUTQ, ethanolamine utilization protein; structural 89.4
4hn1_A201 Putative 3-epimerase in D-allose pathway; 3'-monoe 89.12
2vpv_A166 Protein MIF2, MIF2P; nucleus, mitosis, centromere, 89.1
2i45_A107 Hypothetical protein; neisseria meningitidis cupin 89.03
3bb6_A127 Uncharacterized protein YEAR; structural genomics, 86.91
3bcw_A123 Uncharacterized protein; structural genomics, join 86.57
1vr3_A191 Acireductone dioxygenase; 13543033, structural gen 86.52
3s7i_A418 Allergen ARA H 1, clone P41B; bicupin, vicilin, st 85.37
1fxz_A 476 Glycinin G1; proglycinin, legumin, SEED storage pr 84.92
2ozi_A98 Hypothetical protein RPA4178; APC6210, putative pr 84.7
2pyt_A133 Ethanolamine utilization protein EUTQ; structural 84.66
1juh_A350 Quercetin 2,3-dioxygenase; cupin, glycoprotein, be 84.62
1sef_A274 Conserved hypothetical protein; structural genomic 84.37
2e9q_A 459 11S globulin subunit beta; cucubitin, pumpkin SEED 84.15
3s7i_A 418 Allergen ARA H 1, clone P41B; bicupin, vicilin, st 83.07
2d5f_A 493 Glycinin A3B4 subunit; soybean, globulin, 11S,SEED 82.7
4h7l_A157 Uncharacterized protein; structural genomics, PSI- 82.46
3dl3_A119 Tellurite resistance protein B; X-RAY NESG VFR98 Q 80.81
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-57  Score=424.97  Aligned_cols=232  Identities=51%  Similarity=0.988  Sum_probs=210.3

Q ss_pred             cccccCCCCHHHHHHhhhcCCCcEEEecCCCCCccCCCCCcHHHHHHHhCCceEEEEeCcccccCCceeeecCHHHHHHH
Q 015736          158 LVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLER  237 (401)
Q Consensus       158 ~i~r~~~lS~e~F~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~yL~~~~G~~~V~ve~g~~y~~~~w~~~~mt~~eFl~~  237 (401)
                      .|+|++.+|.++|+++|+.+++||||+|++++|||+++|+ .+||++++|++.|+|+.+..+.+.++....|+|++|++.
T Consensus         2 tipri~~pS~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~-~~yL~~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~   80 (235)
T 4gjz_A            2 TVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISK   80 (235)
T ss_dssp             BCCEEESCCHHHHHHHTTTTTCCEEEESSSTTSHHHHHCS-HHHHHHHHTTSEEEEEEC-------CEEEEEEHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHhcCCCcEEEeCCCcCCcccccCC-HHHHHHHcCCCeEEEEecCcccCCccceeeccHHHHHHH
Confidence            5899999999999999999999999999999999999998 899999999999999999888888899999999999999


Q ss_pred             HHhCCCCCCCCceeeccchhhhhHhhhccCCCCCccccCCc--cccccceeeccCCCCCccccccCCceeEEEeeeeEEE
Q 015736          238 IQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGG--ELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIR  315 (401)
Q Consensus       238 ~~~~~~~~~~~~YL~q~~l~~~~p~L~~Di~~P~~~~~~~~--~~~~~~~W~Gp~gt~splH~D~~~n~l~qV~G~K~~~  315 (401)
                      +....  .....|++++.+.++.|+|.+|+.+|+++.....  .....++|||++||+|++|+|+++|++|||.|+|+|+
T Consensus        81 ~~~~~--~~~~~y~~~~~~~~~~~~l~~d~~~p~~~~~~~~~~~~~~~~~wiG~~gs~t~~H~D~~~n~~~qv~G~K~w~  158 (235)
T 4gjz_A           81 YIVNE--PRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIR  158 (235)
T ss_dssp             HTSSC--CSSCEEEEEECHHHHCHHHHTTCCCCGGGGGSSSCGGGCEEEEEEECTTCEEEEECCSSEEEEEEEESCEEEE
T ss_pred             HhhcC--CcccceeehhhhhhhhHHHHHhhcCCccccccccccCccceEEEEeCCCCCceeeeccccceEEEEeeeEeeE
Confidence            87765  6678999999999999999999999998765432  2345789999999999999999999999999999999


Q ss_pred             EecCCCCCccccCcccccCCCCcccCCCcccccCCCCCCCceEEEEEcCCCEEEeCCCceEEEEecCceEEEEeccC
Q 015736          316 LYPASLSEELYPYSETMLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLYIPPKWWHYVRSLSISFSVSFWWS  392 (401)
Q Consensus       316 L~pP~~~~~Lyp~~~~~~~ntS~vD~~~~d~~~fP~~~~a~~~e~iL~pGD~LyIP~gWwH~V~sl~~siSVs~wf~  392 (401)
                      ||||.+.+.+|+.......+.|.+|++++|+++||.++++++++|+|+|||+||||+||||+|+|+++|||||+||+
T Consensus       159 L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~w~s  235 (235)
T 4gjz_A          159 LYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS  235 (235)
T ss_dssp             EECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEC
T ss_pred             EcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCCCEEEeCCCCcEEEEECCCEEEEEEecC
Confidence            99999999999987777788999999999999999999999999999999999999999999999999999999995
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Back     alignment and structure
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} Back     alignment and structure
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* Back     alignment and structure
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Back     alignment and structure
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Back     alignment and structure
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Back     alignment and structure
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Back     alignment and structure
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Back     alignment and structure
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Back     alignment and structure
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Back     alignment and structure
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Back     alignment and structure
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 Back     alignment and structure
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Back     alignment and structure
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A* Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20 Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Back     alignment and structure
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Back     alignment and structure
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} Back     alignment and structure
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Back     alignment and structure
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Back     alignment and structure
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Back     alignment and structure
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} Back     alignment and structure
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} Back     alignment and structure
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} Back     alignment and structure
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A Back     alignment and structure
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Back     alignment and structure
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Back     alignment and structure
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Back     alignment and structure
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp} Back     alignment and structure
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Back     alignment and structure
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A Back     alignment and structure
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Back     alignment and structure
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Back     alignment and structure
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Back     alignment and structure
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} Back     alignment and structure
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Back     alignment and structure
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Back     alignment and structure
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Back     alignment and structure
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Back     alignment and structure
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19 Back     alignment and structure
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A Back     alignment and structure
>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str} Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A* Back     alignment and structure
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Back     alignment and structure
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} Back     alignment and structure
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A Back     alignment and structure
>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A Back     alignment and structure
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} Back     alignment and structure
>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A* Back     alignment and structure
>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A* Back     alignment and structure
>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A* Back     alignment and structure
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Back     alignment and structure
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Back     alignment and structure
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A Back     alignment and structure
>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A Back     alignment and structure
>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1 Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A* Back     alignment and structure
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A* Back     alignment and structure
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Back     alignment and structure
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism} Back     alignment and structure
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Back     alignment and structure
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} Back     alignment and structure
>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A Back     alignment and structure
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae} Back     alignment and structure
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Back     alignment and structure
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13 Back     alignment and structure
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50} Back     alignment and structure
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6 Back     alignment and structure
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Back     alignment and structure
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Back     alignment and structure
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 Back     alignment and structure
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Back     alignment and structure
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11 Back     alignment and structure
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Back     alignment and structure
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Back     alignment and structure
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A Back     alignment and structure
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus} Back     alignment and structure
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 401
d1h2ka_335 b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibit 5e-52
d1vrba1319 b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla 1e-42
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Length = 335 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  175 bits (443), Expect = 5e-52
 Identities = 72/272 (26%), Positives = 117/272 (43%), Gaps = 31/272 (11%)

Query: 149 LPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGD 208
           L + S   + + + S         E   +  PV++TD    +PA   W+ L+YL+   G+
Sbjct: 18  LRSYSFPTRPIPRLSQSDPRAE--ELIENEEPVVLTDTNLVYPALK-WD-LEYLQENIGN 73

Query: 209 RTVPVEVGKNY---------------LCQDWKQELIPFSQFLERIQ-SNGSSASVPTYLA 252
               V     +                     +E + F +F+E++Q           YL 
Sbjct: 74  GDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQ 133

Query: 253 QHQLFDQINELRNDICIPDYCFV-------GGGELRSLNAWFGPAGTVTPLHHDPHHNIL 305
           Q        ++  D    ++ ++       G G+L S     G  G VTP H+D   N  
Sbjct: 134 QTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQNFF 193

Query: 306 AQVVGKKYIRLYPASLSEELYPYSETMLC-NSSQVDLDNIDETKFPKVRDLEFFDCILDE 364
           AQ+ G K   L+P    E LYPY     C   SQVD DN D  +FP  +++  ++ ++  
Sbjct: 194 AQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGP 253

Query: 365 GEMLYIPPKWWHYVRSL---SISFSVSFWWSD 393
           G++LYIP  WWH++ SL    I+ +V+FW+  
Sbjct: 254 GDVLYIPMYWWHHIESLLNGGITITVNFWYKG 285
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 100.0
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 100.0
d1lr5a_160 Auxin binding protein {Maize (Zea mays) [TaxId: 45 97.4
d1x82a_190 Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc 97.33
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 96.98
d1fxza2174 Seed storage 7S protein {Soybean (Glycine max), pr 96.94
d1od5a2173 Seed storage 7S protein {Soybean (Glycine max), gl 96.9
g1dgw.1168 Seed storage 7S protein {Jack bean (Canavalia ensi 96.76
d2phla2162 Seed storage 7S protein {French bean (Phaseolus vu 96.71
d1j58a_372 Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil 96.55
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 96.53
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 96.4
d1j58a_ 372 Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil 96.34
d1uika2185 Seed storage 7S protein {Soybean (Glycine max), be 96.18
d2et1a1201 Germin {Barley (Hordeum vulgare) [TaxId: 4513]} 96.17
d1uija1170 Seed storage 7S protein {Soybean (Glycine max), be 95.95
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 95.75
d1zvfa1175 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea 95.65
d2f4pa1134 Hypothetical protein TM1010 {Thermotoga maritima [ 95.56
d1dgwa_178 Seed storage 7S protein {Jack bean (Canavalia ensi 95.31
d2phda1 351 Gentisate 1,2-dioxygenase {Pseudaminobacter salicy 95.31
d2d40a1 308 Gentisate 1,2-dioxygenase {Escherichia coli [TaxId 95.2
d2d40a1308 Gentisate 1,2-dioxygenase {Escherichia coli [TaxId 95.09
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 95.04
d1nxma_194 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto 94.94
d1uika1203 Seed storage 7S protein {Soybean (Glycine max), be 94.85
d1wlta1176 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo 94.82
d2pa7a1135 dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane 94.75
d2ixca1198 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac 94.64
d1y3ta1 330 Hypothetical protein YxaG {Bacillus subtilis [TaxI 94.55
d3bu7a1355 Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ 94.39
d2phda1351 Gentisate 1,2-dioxygenase {Pseudaminobacter salicy 93.96
d1yfua1174 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m 93.91
d1y3ta1330 Hypothetical protein YxaG {Bacillus subtilis [TaxI 93.81
d1juha_ 348 Quercetin 2,3-dioxygenase {Aspergillus japonicus [ 93.79
d3bu7a1 355 Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ 93.74
d1ep0a_183 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo 93.73
d1dzra_183 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone 93.54
d2c0za1190 Novobiocin biosynthesis protein NovW {Streptomyces 93.34
d2bnma2122 Hydroxypropylphosphonic acid epoxidase Fom4, C-ter 93.15
d1oi6a_202 dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc 92.84
d1sefa_250 Hypothetical protein EF2996 {Enterococcus faecalis 92.14
d1juha_348 Quercetin 2,3-dioxygenase {Aspergillus japonicus [ 91.5
d2gm6a1192 Cysteine dioxygenase type I {Ralstonia eutropha [T 91.43
d2ixha1184 dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom 91.42
d2pyta1128 Ethanolamine utilization protein EutQ {Salmonella 90.93
d3bb6a1109 Uncharacterized protein YeaR {Escherichia coli [Ta 90.86
d3elna1186 Cysteine dioxygenase type I {Rattus norvegicus [Ta 90.71
d1y9qa299 Probable transcriptional regulator VC1968, C-termi 89.58
d2phla1200 Seed storage 7S protein {French bean (Phaseolus vu 89.58
d3dl3a196 Tellurite resistance protein B, TehB {Vibrio fisch 89.49
d1sefa_ 250 Hypothetical protein EF2996 {Enterococcus faecalis 88.86
d1sfna_245 Hypothetical protein DR1152 {Deinococcus radiodura 88.61
d1rc6a_ 253 Hypothetical protein YlbA {Escherichia coli [TaxId 88.37
d1sq4a_273 Glyoxylate-induced protein PA1140 {Pseudomonas aer 87.73
d1rc6a_253 Hypothetical protein YlbA {Escherichia coli [TaxId 87.23
d1sq4a_ 273 Glyoxylate-induced protein PA1140 {Pseudomonas aer 84.07
d1sfna_ 245 Hypothetical protein DR1152 {Deinococcus radiodura 80.02
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-46  Score=364.25  Aligned_cols=241  Identities=28%  Similarity=0.473  Sum_probs=196.7

Q ss_pred             cCCCcccccCCCCHHHHHHhhhcCCCcEEEecCCCCCccCCCCCcHHHHHHHhCCceEEEEeCcccc-------------
Q 015736          154 LSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYL-------------  220 (401)
Q Consensus       154 ~~~~~i~r~~~lS~e~F~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~yL~~~~G~~~V~ve~g~~y~-------------  220 (401)
                      +...+|+|++..+.  |.++|+.+++||||+|++.+|||+ +|+ .+||++++|++.|+|+++....             
T Consensus        23 ~~~~~vpr~~~~~~--~~e~y~~~~~PvVi~g~~~~Wpa~-kWt-~dyL~~~~Gd~~V~v~~~~~~~~~~~~~~~~~~~~   98 (335)
T d1h2ka_          23 FPTRPIPRLSQSDP--RAEELIENEEPVVLTDTNLVYPAL-KWD-LEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQ   98 (335)
T ss_dssp             SCEEECCEECTTCH--HHHHHHHTTCCEEESCCCTTGGGG-GCC-HHHHHHHSCSCCEEEEEESSSBCCCCCGGGGGGGT
T ss_pred             CCCcccCccCCCCc--CHHHHhcCCCCEEEeCCCCCCCcc-cCC-HHHHHHhhCCceEEEEEecCccccccccccccccc
Confidence            34568899987766  467899999999999999999998 698 8999999999999999754311             


Q ss_pred             --cCCceeeecCHHHHHHHHHhCC-CCCCCCceeeccchhhhhHhhhccCCCCCcccc-------CCccccccceeeccC
Q 015736          221 --CQDWKQELIPFSQFLERIQSNG-SSASVPTYLAQHQLFDQINELRNDICIPDYCFV-------GGGELRSLNAWFGPA  290 (401)
Q Consensus       221 --~~~w~~~~mt~~eFl~~~~~~~-~~~~~~~YL~q~~l~~~~p~L~~Di~~P~~~~~-------~~~~~~~~~~W~Gp~  290 (401)
                        ........|++++|++.+.... .......|+.+.......+++..|+..|++++.       ..+.....++|||++
T Consensus        99 ~~~~~~~~~~~~~~ef~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lwiG~~  178 (335)
T d1h2ka_          99 NFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGME  178 (335)
T ss_dssp             TCCCSEEEEEECHHHHHHHHHHHHHTTCCCEEEEEEECCTTSCHHHHHHHHTSCHHHHHHHHHHHTCCCEEECEEEEECT
T ss_pred             ccccccchhcccHHHHHHHHHhccccCCCcceEhhhccccccChhhhcccccCcccccchhhccccccCCcceEEEEcCC
Confidence              1123467899999999886432 114556788877655556777777766665432       223345678999999


Q ss_pred             CCCCccccccCCceeEEEeeeeEEEEecCCCCCccccCccc-ccCCCCcccCCCcccccCCCCCCCceEEEEEcCCCEEE
Q 015736          291 GTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELYPYSET-MLCNSSQVDLDNIDETKFPKVRDLEFFDCILDEGEMLY  369 (401)
Q Consensus       291 gt~splH~D~~~n~l~qV~G~K~~~L~pP~~~~~Lyp~~~~-~~~ntS~vD~~~~d~~~fP~~~~a~~~e~iL~pGD~Ly  369 (401)
                      ||+|++|+|+++|++|||.|+|+|+||||.+.+.+|+.... ...+.|.+|++++|++++|.+.++++++|+|+|||+||
T Consensus       179 gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l~pGd~L~  258 (335)
T d1h2ka_         179 GNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLY  258 (335)
T ss_dssp             TCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEECTTCEEE
T ss_pred             CCCCccccccccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEECCCCEEe
Confidence            99999999999999999999999999999999999987643 24567899999999999999999999999999999999


Q ss_pred             eCCCceEEEEecCc---eEEEEeccCCCCCCC
Q 015736          370 IPPKWWHYVRSLSI---SFSVSFWWSDGGSST  398 (401)
Q Consensus       370 IP~gWwH~V~sl~~---siSVs~wf~~~~~~~  398 (401)
                      ||+||||+|+|+++   ||||||||+..+.+.
T Consensus       259 iP~~w~H~V~~~~~~~~sisvn~w~~~~~~~~  290 (335)
T d1h2ka_         259 IPMYWWHHIESLLNGGITITVNFWYKGAPTPK  290 (335)
T ss_dssp             ECTTCEEEEEECTTSCCEEEEEEEEECCCCC-
T ss_pred             eCCCCeEEEEEcCCCCeEEEEEeeecCCCChh
Confidence            99999999999965   999999999877654
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Back     information, alignment and structure
>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Back     information, alignment and structure
>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Back     information, alignment and structure
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Back     information, alignment and structure
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Back     information, alignment and structure
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]} Back     information, alignment and structure
>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Back     information, alignment and structure
>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]} Back     information, alignment and structure
>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Back     information, alignment and structure
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Back     information, alignment and structure
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]} Back     information, alignment and structure
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Back     information, alignment and structure
>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Back     information, alignment and structure
>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]} Back     information, alignment and structure
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Back     information, alignment and structure
>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Back     information, alignment and structure
>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} Back     information, alignment and structure
>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Back     information, alignment and structure
>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]} Back     information, alignment and structure
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure