Citrus Sinensis ID: 015754

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVDQ
cccEEEEEEcccccccccccHHHHHHccccccccccccccccccccccccEEEEccccccccccEEEEccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccHHHHHHHHHHHHccccccccEEEEcccccccccccccccccccccccccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHHccEEccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHccccccEEEEccccccccEEEEccccccccHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHccc
ccEEEEEEEccccHHHcHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccEEEEEEcccccHHHEccccccccccccHcEccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHcEEEcccccccccHHHHHHHccccccEcccccccccccccccHHHHHccHHHHHHHHccHHHHHHccccccccEEEEEEEEcccccHHHHHHHHHHHHcccccEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MREIISIHIGQAGIQVGNSCWELyclehgihpdgtmpsdtsvgacHDAFNTffsetgsgqhvpravfvdlepsvidevrtgsyrqlfhpeqlisgkedaannfarghytVGREIVDLCLDRVRKLADNCTGLQGFLVFSavgggtgsgLGSLLLERLsvdygkksklgftiypspqvstavvepynsvlsthsllehTDVAVLLDNEAIYDICRRsldierpnytnLNRLISQIISSLTtslrfdgainvditefqtnlvpyprihfmlssyAPVISAAKAYheqisvpeitsavfepssmmakcdprhgkyMACClmyrgdvvpkdVNTAVATIKtkravqfvdwcptgfkcgihfCNIIKHSFLMVAKCMHGVQRIMTmnlhfdssvfaipdqltlvdq
MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVpeitsavfepsSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVfaipdqltlvdq
MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVgggtgsglgslllerlsVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRlisqiisslttslRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVDQ
***IISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLT****
*REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSD****ACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVD*
MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVDQ
MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVDQ
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MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVDQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query401 2.2.26 [Sep-21-2011]
P33627450 Tubulin alpha-6 chain OS= N/A no 0.890 0.793 0.949 0.0
O22349450 Tubulin alpha-3 chain OS= N/A no 0.890 0.793 0.949 0.0
P28752450 Tubulin alpha-1 chain OS= yes no 0.890 0.793 0.943 0.0
B9DHQ0450 Tubulin alpha-5 chain OS= yes no 0.890 0.793 0.943 0.0
Q56WH1450 Tubulin alpha-3 chain OS= yes no 0.890 0.793 0.943 0.0
Q02245450 Tubulin alpha-5 chain OS= N/A no 0.890 0.793 0.943 0.0
Q43473450 Tubulin alpha-1 chain OS= N/A no 0.890 0.793 0.938 0.0
P11139450 Tubulin alpha-1 chain OS= no no 0.890 0.793 0.924 0.0
Q38771447 Tubulin alpha chain OS=Av N/A no 0.890 0.798 0.927 0.0
Q6VAF9450 Tubulin alpha-4 chain OS= N/A no 0.890 0.793 0.899 0.0
>sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1 Back     alignment and function desciption
 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/357 (94%), Positives = 350/357 (98%)

Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQ 60
           MREIISIHIGQAGIQVGN+CWELYCLEHGI PDGTMPSDTSVG  HDAFNTFFSETGSG+
Sbjct: 1   MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGK 60

Query: 61  HVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRA+FVDLEP+VIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLD
Sbjct: 61  HVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
           RVRKLADNCTGLQGFLVF+AVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERP YTNLNRLISQIISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSS 300
           SLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQ+SVPEIT+AVFEPSS
Sbjct: 241 SLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHF 357
           MMAKCDPRHGKYMACCLMYRGDVVPKDVN AVATIKTKR VQFVDWCPTGFKCGI++
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINY 357
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Zea mays (taxid: 4577)
>sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1 Back     alignment and function description
>sp|P28752|TBA1_ORYSJ Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1 Back     alignment and function description
>sp|B9DHQ0|TBA5_ARATH Tubulin alpha-5 chain OS=Arabidopsis thaliana GN=TUBA5 PE=2 SV=2 Back     alignment and function description
>sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=2 Back     alignment and function description
>sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1 Back     alignment and function description
>sp|Q43473|TBA1_HORVU Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1 Back     alignment and function description
>sp|P11139|TBA1_ARATH Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1 Back     alignment and function description
>sp|Q38771|TBA_AVESA Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1 Back     alignment and function description
>sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
224144808449 tubulin alpha-8 chain [Populus trichocar 0.890 0.795 0.960 0.0
37936220450 alpha-tubulin [Miscanthus sinensis] 0.890 0.793 0.955 0.0
37936232450 alpha-tubulin [Miscanthus floridulus] 0.890 0.793 0.955 0.0
162462001450 tubulin alpha-6 chain [Zea mays] gi|4648 0.890 0.793 0.949 0.0
6094431450 RecName: Full=Tubulin alpha-3 chain; Alt 0.890 0.793 0.949 0.0
37936226450 alpha-tubulin [Miscanthus sinensis subsp 0.890 0.793 0.949 0.0
443908533449 alpha-tubulin 1 [Hevea brasiliensis] 0.890 0.795 0.952 0.0
115472953450 Os07g0574800 [Oryza sativa Japonica Grou 0.890 0.793 0.943 0.0
37936228450 alpha-tubulin [Miscanthus floridulus] 0.890 0.793 0.946 0.0
255582570449 tubulin alpha chain, putative [Ricinus c 0.890 0.795 0.952 0.0
>gi|224144808|ref|XP_002325422.1| tubulin alpha-8 chain [Populus trichocarpa] gi|222862297|gb|EEE99803.1| tubulin alpha-8 chain [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/357 (96%), Positives = 353/357 (98%)

Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQ 60
           MREIISIHIGQAGIQVGNSCWELYCLEHGI PDGTMPSDTS+GA HD+FNTFFSETGSG+
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSIGAEHDSFNTFFSETGSGK 60

Query: 61  HVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRA+FVDLEPSVIDEVR+G+YRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD
Sbjct: 61  HVPRAIFVDLEPSVIDEVRSGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
           RVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERP YTNLNRLISQIISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSS 300
           SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSS
Sbjct: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSS 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHF 357
           MMAKCDPRHGKYMACCLMYRGDVVPKDVN+AV+TIKTKR VQFVDWCPTGFKCGI++
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNSAVSTIKTKRTVQFVDWCPTGFKCGINY 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|37936220|emb|CAD26887.1| alpha-tubulin [Miscanthus sinensis] Back     alignment and taxonomy information
>gi|37936232|emb|CAD26893.1| alpha-tubulin [Miscanthus floridulus] Back     alignment and taxonomy information
>gi|162462001|ref|NP_001105588.1| tubulin alpha-6 chain [Zea mays] gi|464846|sp|P33627.1|TBA6_MAIZE RecName: Full=Tubulin alpha-6 chain; AltName: Full=Alpha-6-tubulin gi|22158|emb|CAA44863.1| alpha-tubulin #6 [Zea mays] gi|224033451|gb|ACN35801.1| unknown [Zea mays] gi|380841319|gb|AFE82989.1| tubulin alpha-5 [Saccharum hybrid cultivar] gi|414887268|tpg|DAA63282.1| TPA: alpha tubulin6 [Zea mays] Back     alignment and taxonomy information
>gi|6094431|sp|O22349.1|TBA3_ELEIN RecName: Full=Tubulin alpha-3 chain; AltName: Full=Alpha-3-tubulin gi|2511535|gb|AAC05719.1| alpha-tubulin 3 [Eleusine indica] Back     alignment and taxonomy information
>gi|37936226|emb|CAD26890.1| alpha-tubulin [Miscanthus sinensis subsp. condensatus] Back     alignment and taxonomy information
>gi|443908533|gb|AGD80034.1| alpha-tubulin 1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|115472953|ref|NP_001060075.1| Os07g0574800 [Oryza sativa Japonica Group] gi|135399|sp|P28752.1|TBA1_ORYSJ RecName: Full=Tubulin alpha-1 chain gi|20379|emb|CAA77988.1| alpha 1 tubulin [Oryza sativa Japonica Group] gi|1136124|emb|CAA62918.1| alfa-tubulin [Oryza sativa Japonica Group] gi|34393570|dbj|BAC83168.1| Tubulin alpha-1 chain [Oryza sativa Japonica Group] gi|50509129|dbj|BAD30236.1| Tubulin alpha-1 chain [Oryza sativa Japonica Group] gi|110617750|gb|ABG78594.1| alpha-tubulin [Oryza sativa Japonica Group] gi|113611611|dbj|BAF21989.1| Os07g0574800 [Oryza sativa Japonica Group] gi|125558900|gb|EAZ04436.1| hypothetical protein OsI_26583 [Oryza sativa Indica Group] gi|125600815|gb|EAZ40391.1| hypothetical protein OsJ_24840 [Oryza sativa Japonica Group] gi|215695370|dbj|BAG90561.1| unnamed protein product [Oryza sativa Japonica Group] gi|215697286|dbj|BAG91280.1| unnamed protein product [Oryza sativa Japonica Group] gi|215740861|dbj|BAG97017.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|37936228|emb|CAD26891.1| alpha-tubulin [Miscanthus floridulus] Back     alignment and taxonomy information
>gi|255582570|ref|XP_002532068.1| tubulin alpha chain, putative [Ricinus communis] gi|223528272|gb|EEF30323.1| tubulin alpha chain, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
TAIR|locus:2183259450 TUA3 "tubulin alpha-3" [Arabid 0.890 0.793 0.859 4.1e-168
TAIR|locus:2183154450 TUA5 "tubulin alpha-5" [Arabid 0.890 0.793 0.859 4.1e-168
TAIR|locus:2010846450 TUA1 "alpha-1 tubulin" [Arabid 0.890 0.793 0.843 2.6e-166
TAIR|locus:2010677450 TUA4 "tubulin alpha-4 chain" [ 0.890 0.793 0.806 1.1e-160
TAIR|locus:2031015450 TUA2 "tubulin alpha-2 chain" [ 0.890 0.793 0.806 1.1e-160
TAIR|locus:3439219450 TUA6 "Tubulin alpha-6" [Arabid 0.890 0.793 0.803 2.2e-160
UNIPROTKB|Q3ZCJ7449 TUBA1C "Tubulin alpha-1C chain 0.890 0.795 0.739 4.2e-150
UNIPROTKB|P81947451 P81947 "Tubulin alpha-1B chain 0.890 0.791 0.733 8.8e-150
UNIPROTKB|P68363451 TUBA1B "Tubulin alpha-1B chain 0.890 0.791 0.733 8.8e-150
UNIPROTKB|Q2XVP4451 TUBA1B "Tubulin alpha-1B chain 0.890 0.791 0.733 8.8e-150
TAIR|locus:2183259 TUA3 "tubulin alpha-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1635 (580.6 bits), Expect = 4.1e-168, P = 4.1e-168
 Identities = 307/357 (85%), Positives = 319/357 (89%)

Query:     1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQ 60
             MREIISIHIGQAGIQVGNSCWELYCLEHGI PDG MPSDT+VG  HDAFNTFFSETG+G+
Sbjct:     1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60

Query:    61 HVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
             HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLD
Sbjct:    61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query:   121 RVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
             RVRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTIYPSPQVSTA
Sbjct:   121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query:   181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRXXXXXXXXXXX 240
             VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERP YTNLNR           
Sbjct:   181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query:   241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSS 300
               RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQ+SVPEIT+AVFEP+S
Sbjct:   241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPAS 300

Query:   301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHF 357
             MMAKCDPRHGKYMACCLMYRGDVVPKDVN AV TIKTKR VQFVDWCPTGFKCGI++
Sbjct:   301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINY 357
GO:0003924 "GTPase activity" evidence=IEA
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0045298 "tubulin complex" evidence=ISS
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0071258 "cellular response to gravity" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
TAIR|locus:2183154 TUA5 "tubulin alpha-5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010846 TUA1 "alpha-1 tubulin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010677 TUA4 "tubulin alpha-4 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031015 TUA2 "tubulin alpha-2 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:3439219 TUA6 "Tubulin alpha-6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCJ7 TUBA1C "Tubulin alpha-1C chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P81947 P81947 "Tubulin alpha-1B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P68363 TUBA1B "Tubulin alpha-1B chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2XVP4 TUBA1B "Tubulin alpha-1B chain" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P28752TBA1_ORYSJNo assigned EC number0.94390.89020.7933yesno
Q02245TBA5_MAIZENo assigned EC number0.94390.89020.7933N/Ano
Q9FT36TBA_DAUCANo assigned EC number0.87670.89020.7915N/Ano
Q27352TBA_TRYCRNo assigned EC number0.83470.89020.7915N/Ano
Q9ZRJ4TBA_CHLVUNo assigned EC number0.87950.89020.7915N/Ano
P11481TBA1_VOLCANo assigned EC number0.87670.89020.7915N/Ano
P28287TBA_OXYGRNo assigned EC number0.86830.89020.7933N/Ano
Q71G51TBA_NEOCANo assigned EC number0.85150.89020.7880N/Ano
P22275TBA3_MAIZENo assigned EC number0.86270.89020.7933N/Ano
Q43473TBA1_HORVUNo assigned EC number0.93830.89020.7933N/Ano
P46259TBA1_PEANo assigned EC number0.89630.89020.7898N/Ano
B9DHQ0TBA5_ARATHNo assigned EC number0.94390.89020.7933yesno
P33623TBA1_ANEPHNo assigned EC number0.88510.89020.7915N/Ano
P12543TBA_PLAYONo assigned EC number0.83750.89020.7880N/Ano
P41351TBA_TETTHNo assigned EC number0.85990.89020.7951N/Ano
Q9ZRR5TBA3_HORVUNo assigned EC number0.89350.89020.7915N/Ano
Q25563TBA13_NAEGRNo assigned EC number0.85990.89020.7880N/Ano
P11139TBA1_ARATHNo assigned EC number0.92430.89020.7933nono
P09243TBA2_STYLENo assigned EC number0.86270.88770.7928N/Ano
P10873TBA_TOXGONo assigned EC number0.85150.89020.7880N/Ano
Q6VAG1TBA1_GOSHINo assigned EC number0.88790.89020.7915N/Ano
Q6VAG0TBA2_GOSHINo assigned EC number0.89630.89020.7933N/Ano
Q96460TBA2_HORVUNo assigned EC number0.88510.89020.7915N/Ano
P09205TBA2_CHLRENo assigned EC number0.87390.89020.7915N/Ano
P09204TBA1_CHLRENo assigned EC number0.87670.89020.7915N/Ano
P10872TBA_TETPYNo assigned EC number0.85990.89020.7951N/Ano
Q38771TBA_AVESANo assigned EC number0.92710.89020.7986N/Ano
Q08114TBA_EUPOCNo assigned EC number0.85990.89020.7933N/Ano
P14641TBA2_MAIZENo assigned EC number0.88510.89020.7915N/Ano
P14640TBA1_MAIZENo assigned EC number0.88510.89020.7915N/Ano
P14642TBA_PLAFKNo assigned EC number0.84590.89020.7880N/Ano
O22348TBA2_ELEINNo assigned EC number0.89630.89020.7986N/Ano
O22349TBA3_ELEINNo assigned EC number0.94950.89020.7933N/Ano
P04105TBAN_PHYPONo assigned EC number0.84310.89020.7951N/Ano
O22347TBA1_ELEINNo assigned EC number0.88790.89020.7915N/Ano
Q56WH1TBA3_ARATHNo assigned EC number0.94390.89020.7933yesno
P33625TBA_EUGGRNo assigned EC number0.87110.89020.7915N/Ano
P33627TBA6_MAIZENo assigned EC number0.94950.89020.7933N/Ano
P33629TBA_PRUDUNo assigned EC number0.89630.89020.7933N/Ano
P11237TBA1_NAEGRNo assigned EC number0.86270.89020.7880N/Ano
P11480TBAE_PHYPONo assigned EC number0.84870.89020.7951N/Ano
P28268TBA_EUPVANo assigned EC number0.84030.88770.7911N/Ano
P50258TBAD_PHYPONo assigned EC number0.85710.89020.7933N/Ano
Q6VAF9TBA4_GOSHINo assigned EC number0.89910.89020.7933N/Ano
Q9ZRB7TBA_WHEATNo assigned EC number0.88230.89020.7915N/Ano
P04106TBA_TRYBRNo assigned EC number0.84590.89020.7915N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 0.0
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 0.0
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-143
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-131
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-130
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-126
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-123
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 2e-94
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 8e-84
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 5e-83
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 4e-81
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 2e-80
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 1e-73
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 2e-51
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 3e-50
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 2e-19
cd06060493 cd06060, misato, Human Misato shows similarity wit 2e-06
cd02202349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 4e-05
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information 
 Score =  817 bits (2113), Expect = 0.0
 Identities = 323/357 (90%), Positives = 343/357 (96%)

Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQ 60
           MRE ISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD +VG   DAFNTFFSETG+G+
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120

Query: 121 RVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
           R+RKLADNCTGLQGFLVF+AVGGGTGSGLGSLLLERLSVDYGKKSKLGFT+YPSPQVSTA
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERP YTNLNRLISQ+ISSLT 
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSS 300
           SLRFDGA+NVDITEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQ+SV EIT++ FEP+S
Sbjct: 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPAS 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHF 357
           MMAKCDPRHGKYMACCLMYRGDVVPKDVN AVATIKTKR +QFVDWCPTGFKCGI++
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINY 357

Length = 450
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 401
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
KOG1374448 consensus Gamma tubulin [Cytoskeleton] 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG1376407 consensus Alpha tubulin [Cytoskeleton] 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
KOG1375369 consensus Beta tubulin [Cytoskeleton] 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 100.0
KOG2530483 consensus Members of tubulin/FtsZ family [Cytoskel 99.98
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.96
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.94
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.93
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.93
PRK13018378 cell division protein FtsZ; Provisional 99.92
PF14881180 Tubulin_3: Tubulin domain 99.88
PRK09330384 cell division protein FtsZ; Validated 99.87
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.46
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.4
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.67
PF13809345 Tubulin_2: Tubulin like 97.44
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=6.1e-122  Score=879.45  Aligned_cols=385  Identities=55%  Similarity=0.986  Sum_probs=368.6

Q ss_pred             CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754            1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT   80 (401)
Q Consensus         1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~   80 (401)
                      ||||||||+||||||||++||+++|+||||.++|.+....+  ...++.++||+|++.|||+||||+||+||+||+.+++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~   78 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN   78 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence            99999999999999999999999999999999999765443  2468899999999999999999999999999999999


Q ss_pred             cccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhh
Q 015754           81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD  160 (401)
Q Consensus        81 ~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~de  160 (401)
                      |+|+.+|||++++.|++|||||||+|+|++|+++.|+++|.|||++|.||+||||+++||+|||||||+|+.|||+|++|
T Consensus        79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e  158 (443)
T COG5023          79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE  158 (443)
T ss_pred             CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccc
Q 015754          161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT  240 (401)
Q Consensus       161 yp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~  240 (401)
                      ||||.+.+|+|||.++.++++|||||++|++++|.|+||+++++||++|+++|.+.|++++|+|.++|++||++++++|+
T Consensus       159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt  238 (443)
T COG5023         159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT  238 (443)
T ss_pred             cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceeccccccc
Q 015754          241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYR  320 (401)
Q Consensus       241 ~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~R  320 (401)
                      ++||||++|.||++|.+|||||||+||+.++|+|+++..+..+++.|+.|+++++|+++|+|++|||+.|+|+++++++|
T Consensus       239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r  318 (443)
T COG5023         239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR  318 (443)
T ss_pred             eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhhc
Q 015754          321 GDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVD  400 (401)
Q Consensus       321 G~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (401)
                      |+++++||++++.++|.|++++||+|+|++||+++|+.||....         ++.    |.-.|.+|.|+|+|.|++++
T Consensus       319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~---------~~~----~s~~~lsNtTsi~e~fkr~~  385 (443)
T COG5023         319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPA---------EVD----VSGCMLSNTTSIAEAFKRID  385 (443)
T ss_pred             cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccc---------cce----eeeEeecCcHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999993221         223    33346788999999999986

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1374 consensus Gamma tubulin [Cytoskeleton] Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376 consensus Alpha tubulin [Cytoskeleton] Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>KOG1375 consensus Beta tubulin [Cytoskeleton] Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton] Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-166
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-166
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 1e-165
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-165
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-165
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-165
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 1e-164
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 1e-164
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-163
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-163
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 1e-163
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-132
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 3e-79
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 3e-79
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 3e-79
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 4e-79
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 4e-79
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 4e-79
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 4e-79
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 4e-79
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 5e-79
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 2e-74
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 6e-64
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 3e-61
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 2e-43
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-43
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  580 bits (1496), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 264/357 (73%), Positives = 302/357 (84%)
Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQ 60
           MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD ++G   D+FNTFFSETG+G+
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61  HVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+G+EI+DL LD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
           RVRKLAD CTGLQGFLVF +                  VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRXXXXXXXXXXX 240
           VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERP YTNLNR           
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSS 300
             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISA KAYHEQ+SV EIT+A FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHF 357
            M KCDPRHGKYMACCL+YRGDVVPKDVN A+ATIKTKR +QFVDWCPTGFK GI++
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 2e-07
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 9e-05
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 2e-04
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  650 bits (1678), Expect = 0.0
 Identities = 290/381 (76%), Positives = 336/381 (88%), Gaps = 4/381 (1%)

Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQ 60
           MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD ++G   D+FNTFFSETG+G+
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+DL LD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 121 RVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
           R+RKLAD CTGLQGFLVF + GGGTGSG  SLL+ERLSVDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240
           VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERP YTNLNRLISQI+SS+T 
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSS 300
           SLRFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISA KAYHEQ+SV EIT+A FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNI 360
            M KCDPRHGKYMACCL+YRGDVVPKDVN A+ATIKTKR++QFVDWCPTGFK GI     
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGI--NYQ 358

Query: 361 IKHSFLMVAKCMHGVQRIMTM 381
                ++    +  VQR + M
Sbjct: 359 P--PTVVPGGDLAKVQRAVCM 377
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Length = 427 Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Length = 389 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.98
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.97
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.71
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.21
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=1.5e-114  Score=878.97  Aligned_cols=392  Identities=75%  Similarity=1.245  Sum_probs=375.4

Q ss_pred             CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754            1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT   80 (401)
Q Consensus         1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~   80 (401)
                      |||||+||+||||||||++||+++|+||||++||.+.++...+..++++++||+|++.|+|+||||||||||+|||++++
T Consensus         1 mrEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~   80 (451)
T 3ryc_A            1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (451)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHH
T ss_pred             CceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeee
Confidence            99999999999999999999999999999999999877654433577899999999999999999999999999999999


Q ss_pred             cccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhh
Q 015754           81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD  160 (401)
Q Consensus        81 ~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~de  160 (401)
                      |+|+.+|||+++++|++|||||||+|||+.|+++.|+++|+||+++|+||+||||+++||+|||||||+|+.|+|+|+|+
T Consensus        81 g~~~~lf~p~~~i~gk~gAgNNwA~G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~lle~L~~e  160 (451)
T 3ryc_A           81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVD  160 (451)
T ss_dssp             STTTTTSCGGGEEECSSCCTTCHHHHHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHeeeccccccCCCCeeecccchHhHHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccc
Q 015754          161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT  240 (401)
Q Consensus       161 yp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~  240 (401)
                      |||+.+++++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.+.+++..|+|.++|++||++++++|+
T Consensus       161 y~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~  240 (451)
T 3ryc_A          161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA  240 (451)
T ss_dssp             TTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhccCCCCCchhhHHHHHhccccccc
Confidence            99999999999999888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhccccccCCccccccccCccccccccccccccCHHHHHHHhcCCCCCccccCCCCCceeccccccc
Q 015754          241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQISVPEITSAVFEPSSMMAKCDPRHGKYMACCLMYR  320 (401)
Q Consensus       241 ~~Rf~g~~n~~l~~l~~nLvp~p~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~f~~~~~~~~~~~~~~~~ls~~~~~R  320 (401)
                      ++||||.+|.||.+|.+|||||||+||++++|+|+++..+..++++++.+|++++|++.|+|++|||+.|+||||++++|
T Consensus       241 slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~R  320 (451)
T 3ryc_A          241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR  320 (451)
T ss_dssp             HHHTTCSSSCSHHHHHHHHCSSSSCCCCEEEEECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCGGGSCEEEEEEEEE
T ss_pred             ccccCcccccCHHHHhhccCCCCceeeeccccCccccccccccccCCHHHHHHHHhccccceEecCCCCCchheehhhcc
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHHHhhhccccccccCCCCceEEEeccCCCcCchhhhhhhhcccceeeeecccccccccchHHHHhhhc
Q 015754          321 GDVVPKDVNTAVATIKTKRAVQFVDWCPTGFKCGIHFCNIIKHSFLMVAKCMHGVQRIMTMNLHFDSSVFAIPDQLTLVD  400 (401)
Q Consensus       321 G~~~~~~i~~~~~~~k~~~~~~fv~W~p~~~k~~i~~~~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (401)
                      |+++++||++++.++|.|++++||+|+|+|||+|+|++||+..|+..||+    +++.+|    |++|+|||++.|++++
T Consensus       321 G~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~----~~~s~~----~lsNsTaI~~~f~rl~  392 (451)
T 3ryc_A          321 GDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAK----VQRAVC----MLSNTTAIAEAWARLD  392 (451)
T ss_dssp             ESCCHHHHHHHHHHHHHHCCCCBCTTSCEEEEEEEECSCCCCCTTSSBCC----CSEEEE----EEEEEGGGHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHhhcCCcceEEEccCceeeeeeccCCccCCCccccc----cceeeE----EecCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999886    677665    5899999999999986
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 401
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-124
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-124
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-113
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 7e-53
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 2e-50
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 7e-42
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  357 bits (917), Expect = e-124
 Identities = 194/245 (79%), Positives = 224/245 (91%)

Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQ 60
           MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD ++G   D+FNTFFSETG+G+
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLD 120
           HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+DL LD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 121 RVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
           R+RKLAD CTGLQGF VF + GGGTGSG  SLL+ERLSVDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT 240
           VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERP YTNLNRLI QI+SS+T 
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 241 SLRFD 245
           SLRFD
Sbjct: 241 SLRFD 245
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 99.96
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 99.95
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 99.93
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.66
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.65
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.63
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.61
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=8.7e-80  Score=577.87  Aligned_cols=245  Identities=79%  Similarity=1.330  Sum_probs=237.3

Q ss_pred             CEeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccccccCCCCCCccceeeeCCCCcccccccc
Q 015754            1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRT   80 (401)
Q Consensus         1 MrEIItiq~Gq~GnqIG~~fW~~~~~E~~i~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~PRailvD~e~~~i~~i~~   80 (401)
                      |||||+||+||||||||.+||+++++||++++||....+....+.++..++||+|.++++|+||||+||+||+||+++++
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~   80 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSG
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeecc
Confidence            99999999999999999999999999999999998877655555677899999999999999999999999999999999


Q ss_pred             cccccccCCceeeeccccccCCCCCCccccchhhHHHHHHHHHHHhhhcCCccceeEEEecCCCccCCchHHHHHHhhhh
Q 015754           81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVD  160 (401)
Q Consensus        81 ~~~~~~f~~~~~i~~~~g~gnnwa~G~~~~G~~~~d~~~d~iR~~~E~cD~lqgf~~~~sl~GGtGSG~gs~lle~L~de  160 (401)
                      ++++++|+|++++.+++|+|||||+|||.+|+++.|+++|.|||++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus        81 ~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d~  160 (245)
T d1tuba1          81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVD  160 (245)
T ss_dssp             GGCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHHH
T ss_pred             CcchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCcceEEEEEecCCCCCccchhhhHHHHHHHHHHhhcccchhcchHHHHHhhhccCCCCCCChhhhHHHHHHHHhhccc
Q 015754          161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPNYTNLNRLISQIISSLTT  240 (401)
Q Consensus       161 yp~~~i~~~~v~P~~~~~~~~v~~yNt~Lsl~~L~e~sd~vi~~dN~al~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~  240 (401)
                      ||++.+++++|+|++..+++++||||++|+|++|.+++|+++++||++|+++|.+.++++.|+|+++|++||+.|+++|+
T Consensus       161 yp~~~~~~~~V~P~~~~~~~vvqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~~~~l~i~~~s~~~lN~via~~ls~~T~  240 (245)
T d1tuba1         161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA  240 (245)
T ss_dssp             TTTSCEEEEECCCCSSCSTTTTHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred             cccccccceEEeccccCCCcccccchhhhhhHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999877899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 015754          241 SLRFD  245 (401)
Q Consensus       241 ~~Rf~  245 (401)
                      ++||.
T Consensus       241 ~~RF~  245 (245)
T d1tuba1         241 SLRFD  245 (245)
T ss_dssp             TTTSS
T ss_pred             hccCC
Confidence            99994
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure