Citrus Sinensis ID: 015760

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG
cccccccccEEEHHHHHHccccEEEEEEEEEEccccEEcccccEEEEEEEEEcccccccEEEEEEcccccccccccccccEEEEcEEEEEEEccEEEEEEEccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEccccccccEEEEEEEEEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccHHHHHcccccEEEEEEEEccccHHHHHcccccccEEEEEccEEEEEccEEEEEEEccccEEEcccccHHHHHHHHHHHHccccccccccccccccccEEcccccccccHHHHHHccccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEccccEEEEEEEcccccccccc
ccccccccEEEEHHHHHHccccEEEEEEEEEEcccccccccccEEEEEEEEEcccccccEEEEEEcccHHHcccEcccccEEEEEEEEEEEEccEEEEEEEccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEHHHccccccEEEEEEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccHHHHcccccccEEEEEEEccccHHHHHHHcccccEEEEEEEEEEEEccEEEEEEccccEEEEcccccccHHHHHHHHHHccccccccccccccccccccccccccccEHHHHHcccccccEEEEEEEEEEEccccHHHHccccccEEEEEEEEEEccccEEEEEEEccccHHcccc
mssqrnqggivRIKELAMHVKHKVNLLGVVLefsiprksqgtdYVCVLKIVddsqqspeLLVNIFTSsidqlprvlsprdliLLKNVMIKKHQAELSAVfykdsssfalfdgnsgsnllpyqsspqrfeiTEAEERRINVLRQWCVgfefssgsndyllslkdisehrYFDLVCKVFHVSYDDSKGLWMLFVwdgtdvpplsipgkledeehnplplhiesspldletlrnffpvgtVLRVSTDRSYENFGRYFTATGKWVRIRNMscqvssgmwhgllqssskirlfsdndNVVWDYMRErisgghghmpiwtdpssqfltevDWVNVASVTLMKIATQLQGNVRCCCIVRVvsihpfqaehysspngsseytmkltledpTARIHALLCGKEWVRFQLG
mssqrnqggivrikelamhVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFtssidqlprvLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVlrvstdrsyenfgryftatgkwvrIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHpfqaehysspngssEYTMKLTLEDPTARIHALLCGKEWVRFQLG
MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNvrcccivrvvSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG
********GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDG*****************ITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSI*******************PLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHY*********TMKLTLEDPTARIHALLCGKEWVRF***
******Q***VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGS***************EAEERRINVLRQWC***************LKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPG*********LPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVW****************************DWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG
********GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG
*****NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWV*FQ*G
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query401 2.2.26 [Sep-21-2011]
Q56Y52467 Protection of telomeres p yes no 0.947 0.813 0.327 9e-51
Q6NKX5454 Protection of telomeres p no no 0.947 0.837 0.331 2e-43
P62597 778 Protection of telomeres p yes no 0.413 0.213 0.303 2e-15
Q9NUX5 634 Protection of telomeres p yes no 0.413 0.261 0.320 6e-14
A9JTY4144 Protection of telomeres p no no 0.279 0.777 0.315 6e-14
Q95K48 634 Protection of telomeres p N/A no 0.413 0.261 0.314 6e-14
Q91WC1 640 Protection of telomeres p no no 0.406 0.254 0.302 7e-12
P29550493 Telomere-binding protein N/A no 0.379 0.308 0.241 0.0007
>sp|Q56Y52|POT1A_ARATH Protection of telomeres protein 1a OS=Arabidopsis thaliana GN=POT1A PE=1 SV=1 Back     alignment and function desciption
 Score =  201 bits (511), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 135/412 (32%), Positives = 217/412 (52%), Gaps = 32/412 (7%)

Query: 1   MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPEL 60
           M+ +R    +++IK+    +  +V+L+G+VLE   P++ +  D++C L+I+DD+  SP L
Sbjct: 1   MAKKRESPKLIKIKDAIKLINQQVSLIGIVLEQREPKQCRNNDWICTLRIIDDTYPSPGL 60

Query: 61  LVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA--ELSAVFYKDSSSFALFDGNSGSNL 118
            VN+F+ +++QLP++ +  D+IL   + ++   +   ++A   +  SSFALF+   G + 
Sbjct: 61  TVNVFSKTLEQLPQIKNHDDMILFTRIKMQTFDSGERVNAACSRWVSSFALFE---GVDF 117

Query: 119 LPYQSSPQRFEITEAEERRINVLRQWCVG----------FEFSSGSNDYLLS-LKDISEH 167
           + YQ S    E     +  ++ LR+   G            + +     + S L++I   
Sbjct: 118 VCYQCSTNFHEEEALYKSAMDDLRKVFAGCSQVIKAMQSISYRTKPCSEVFSFLREIKIG 177

Query: 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKL--EDEEHNPLPLHIESSPLD 225
           + FDLVC++ H   D S     +FVWDGTD PP SI  K   ED+  + L +H   + L 
Sbjct: 178 KRFDLVCRILHADEDTS----AVFVWDGTDAPPASILAKRSEEDKAFSSLSVH---TLLS 230

Query: 226 LETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKI 285
            + L +F  VGT+LRV    S   F  Y    G WV++ ++ C+V  G W   + SS+K+
Sbjct: 231 RDVLLSFPTVGTILRVHL--SSHLF--YRVKPGDWVKLYHLLCEVDRGSWVIKVTSSTKV 286

Query: 286 RLFSDNDNVVWDYMR---ERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQ 342
              + +D +V   MR   +R+S   GH+  W  PS   LTE D      VTLM I T  +
Sbjct: 287 HHLAQDDRLVEKIMRIYDKRLSSKLGHISFWCFPSPPGLTETDDNCAPFVTLMDIITFPK 346

Query: 343 GNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKE 394
              +  CIVRVV+ +P+Q E + S      + + LTLED TA + A LC K+
Sbjct: 347 VTCKYRCIVRVVAAYPWQVEDFCSDENRRHHQVLLTLEDSTATLEAFLCNKD 398
Component of the telomerase ribonucleoprotein (RNP) complex that is essential for positive telomere length regulation. Binds specifically the telomerase RNA template component TER1. Does not bind single-stranded telomeric DNA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6NKX5|POT1B_ARATH Protection of telomeres protein 1b OS=Arabidopsis thaliana GN=POT1B PE=1 SV=1 Back     alignment and function description
>sp|P62597|POTE1_CHICK Protection of telomeres protein 1 OS=Gallus gallus GN=POT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9NUX5|POTE1_HUMAN Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1 Back     alignment and function description
>sp|A9JTY4|POT1C_ARATH Protection of telomeres protein 1c OS=Arabidopsis thaliana GN=POT1C PE=2 SV=2 Back     alignment and function description
>sp|Q95K48|POTE1_MACFA Protection of telomeres protein 1 OS=Macaca fascicularis GN=POT1 PE=2 SV=1 Back     alignment and function description
>sp|Q91WC1|POTE1_MOUSE Protection of telomeres protein 1 OS=Mus musculus GN=Pot1 PE=2 SV=1 Back     alignment and function description
>sp|P29550|TEBA_STYMY Telomere-binding protein subunit alpha OS=Stylonychia mytilis GN=STY56V PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
255556592460 conserved hypothetical protein [Ricinus 0.957 0.834 0.49 6e-94
255579267449 conserved hypothetical protein [Ricinus 0.940 0.839 0.411 3e-78
297734334491 unnamed protein product [Vitis vinifera] 0.957 0.782 0.400 2e-76
225456171487 PREDICTED: uncharacterized protein LOC10 0.957 0.788 0.400 3e-76
213495898466 protection of telomeres 1 protein [Solan 0.980 0.843 0.396 1e-75
213495900466 protection of telomeres 1 protein [Nicot 0.955 0.821 0.391 4e-73
213495878462 protection of telomeres 1 protein [Popul 0.970 0.841 0.382 7e-72
213495876466 protection of telomeres 1 protein [Lactu 0.957 0.824 0.395 2e-71
449439461449 PREDICTED: protection of telomeres prote 0.930 0.830 0.379 8e-70
213495880467 protection of telomeres 1 protein [Helia 0.985 0.845 0.384 2e-69
>gi|255556592|ref|XP_002519330.1| conserved hypothetical protein [Ricinus communis] gi|223541645|gb|EEF43194.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 196/400 (49%), Positives = 265/400 (66%), Gaps = 16/400 (4%)

Query: 11  VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID 70
           + I E+A +V  KVNL+G+V+EFS PRKS GTD+V +LKIVD S QSPEL  NIFT  ++
Sbjct: 8   IPIGEVANYVDKKVNLIGIVVEFSFPRKSNGTDFVSILKIVDQSPQSPELSANIFTEKVE 67

Query: 71  QLPRVLSPRDLILLKNVMIKKHQ--AELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRF 128
            LP V S  DLI L+NV I+K+     ++AVF K  SSF LF G+   ++  YQ+  + F
Sbjct: 68  HLPVVKSHGDLIFLQNVTIEKYDDGGVVNAVFDKRFSSFGLFWGSYADDIFCYQTF-RSF 126

Query: 129 EITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLW 188
            ++ +E   +  LR W       SG+N+YL+S+KDI++  YFDLVC+V HVSYD S+G+W
Sbjct: 127 SLSWSERNDLINLRNWWPNAHLDSGTNEYLVSVKDINKGTYFDLVCQVLHVSYDVSRGVW 186

Query: 189 MLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYE 248
           +LFVWDGTD P LS+  KL+DEE +PLPL +ES PL  + L NF  +GTVLRV  D  +E
Sbjct: 187 ILFVWDGTDAPLLSLDQKLKDEEKDPLPLQVESVPLGRDILCNFHHIGTVLRVMADECHE 246

Query: 249 NFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMR---ERISG 305
           N    F   GKWVRIRNMS +V +GMW+G L  SSK+RL +DND +V DY R   ER S 
Sbjct: 247 NLCPQFQGIGKWVRIRNMSGKVWAGMWYGALNPSSKVRLLADNDGIVVDYKRKFKERKS- 305

Query: 306 GHGHMPIWTDPSSQFLTEVDWVN----VASVTLMKIATQLQGNVRCCCIVRVVSIHPFQA 361
               +P+W+ P+   LTE+++ +    +  +TLM + T+ + +    CIVRVV+IHP++ 
Sbjct: 306 ERDRLPLWS-PNDD-LTEIEYDDEGDSIQFMTLMDVLTRKKDDDLFYCIVRVVAIHPYEL 363

Query: 362 EHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVRFQLG 401
           +   S   S E  M+LTLEDPT RIHA L G++ V+F  G
Sbjct: 364 KVLCS---SDEGVMRLTLEDPTGRIHAYLLGEDLVKFVNG 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579267|ref|XP_002530479.1| conserved hypothetical protein [Ricinus communis] gi|223529976|gb|EEF31902.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297734334|emb|CBI15581.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456171|ref|XP_002278684.1| PREDICTED: uncharacterized protein LOC100262869 [Vitis vinifera] Back     alignment and taxonomy information
>gi|213495898|gb|ACJ49169.1| protection of telomeres 1 protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|213495900|gb|ACJ49170.1| protection of telomeres 1 protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|213495878|gb|ACJ49159.1| protection of telomeres 1 protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|213495876|gb|ACJ49158.1| protection of telomeres 1 protein [Lactuca sativa] Back     alignment and taxonomy information
>gi|449439461|ref|XP_004137504.1| PREDICTED: protection of telomeres protein 1a-like [Cucumis sativus] gi|449503109|ref|XP_004161838.1| PREDICTED: protection of telomeres protein 1a-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|213495880|gb|ACJ49160.1| protection of telomeres 1 protein [Helianthus argophyllus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
TAIR|locus:2051214467 AtPOT1a "Protection of Telomer 0.947 0.813 0.315 5.6e-45
TAIR|locus:2164295454 AtPOT1b "protection of telomer 0.947 0.837 0.329 2.8e-41
UNIPROTKB|F1NSB0 778 POT1 "Protection of telomeres 0.523 0.269 0.275 2.2e-15
UNIPROTKB|P62597 778 POT1 "Protection of telomeres 0.523 0.269 0.275 2.2e-15
UNIPROTKB|E1BGK3 782 POT1 "Uncharacterized protein" 0.665 0.341 0.263 8.4e-14
UNIPROTKB|F1P716 785 POT1 "Uncharacterized protein" 0.523 0.267 0.293 1.1e-13
UNIPROTKB|Q9NUX5 634 POT1 "Protection of telomeres 0.523 0.331 0.293 1.3e-13
UNIPROTKB|Q95K48 634 POT1 "Protection of telomeres 0.523 0.331 0.293 1.3e-13
ZFIN|ZDB-GENE-110324-1 773 pot1 "protection of telomeres 0.453 0.235 0.312 8.4e-13
RGD|1582873 636 Pot1b "protection of telomeres 0.411 0.259 0.294 1.8e-11
TAIR|locus:2051214 AtPOT1a "Protection of Telomeres 1a" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 130/412 (31%), Positives = 210/412 (50%)

Query:     1 MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPEL 60
             M+ +R    +++IK+    +  +V+L+G+VLE   P++ +  D++C L+I+DD+  SP L
Sbjct:     1 MAKKRESPKLIKIKDAIKLINQQVSLIGIVLEQREPKQCRNNDWICTLRIIDDTYPSPGL 60

Query:    61 LVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA--ELSAVFYKDSSSFALFDGNSGSNL 118
              VN+F+ +++QLP++ +  D+IL   + ++   +   ++A   +  SSFALF+G    + 
Sbjct:    61 TVNVFSKTLEQLPQIKNHDDMILFTRIKMQTFDSGERVNAACSRWVSSFALFEG---VDF 117

Query:   119 LPYQSSPQRFEITEAEERRINVLRQWCVGFE-----FSSGS------NDYLLSLKDISEH 167
             + YQ S    E     +  ++ LR+   G         S S      ++    L++I   
Sbjct:   118 VCYQCSTNFHEEEALYKSAMDDLRKVFAGCSQVIKAMQSISYRTKPCSEVFSFLREIKIG 177

Query:   168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKL--EDEEHNPLPLHIESSPLD 225
             + FDLVC++ H   D S     +FVWDGTD PP SI  K   ED+  + L +H   + L 
Sbjct:   178 KRFDLVCRILHADEDTSA----VFVWDGTDAPPASILAKRSEEDKAFSSLSVH---TLLS 230

Query:   226 LETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKI 285
              + L +F  VGT+LRV    S   F  Y    G WV++ ++ C+V  G W   + SS+K+
Sbjct:   231 RDVLLSFPTVGTILRVHL--SSHLF--YRVKPGDWVKLYHLLCEVDRGSWVIKVTSSTKV 286

Query:   286 RLFSDNDNVVWDYMR---ERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQ 342
                + +D +V   MR   +R+S   GH+  W  PS   LTE D      VTLM I T  +
Sbjct:   287 HHLAQDDRLVEKIMRIYDKRLSSKLGHISFWCFPSPPGLTETDDNCAPFVTLMDIITFPK 346

Query:   343 GNXXXXXXXXXXSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKE 394
                         + +P+Q E + S      + + LTLED TA + A LC K+
Sbjct:   347 VTCKYRCIVRVVAAYPWQVEDFCSDENRRHHQVLLTLEDSTATLEAFLCNKD 398
GO:0000723 "telomere maintenance" evidence=IEA;IMP
GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0032206 "positive regulation of telomere maintenance" evidence=IMP
GO:0043047 "single-stranded telomeric DNA binding" evidence=TAS
GO:0032212 "positive regulation of telomere maintenance via telomerase" evidence=IMP
GO:0042162 "telomeric DNA binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2164295 AtPOT1b "protection of telomeres 1b" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSB0 POT1 "Protection of telomeres protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P62597 POT1 "Protection of telomeres protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGK3 POT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P716 POT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NUX5 POT1 "Protection of telomeres protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q95K48 POT1 "Protection of telomeres protein 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-110324-1 pot1 "protection of telomeres 1 homolog" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1582873 Pot1b "protection of telomeres 1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q56Y52POT1A_ARATHNo assigned EC number0.32760.94760.8137yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
cd04497138 cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfami 1e-26
pfam02765141 pfam02765, Telo_bind, Telomeric single stranded DN 2e-26
smart00976137 smart00976, Telo_bind, Telomeric single stranded D 5e-22
>gnl|CDD|239943 cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) Back     alignment and domain information 
 Score =  103 bits (258), Expect = 1e-26
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 11  VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDS-QQSPELLVNIFTSSI 69
             +          VN++GVV++   P +S+GTDY C L I D S   S  L V +F  + 
Sbjct: 4   TPLSSALKESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE 63

Query: 70  DQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFE 129
           + LP V    D+ILL+ V I+ +  +   +     SS+A+F G+ G   +P QSS    E
Sbjct: 64  ESLPIV-KVGDIILLRRVKIQSYNGKPQGISNDRGSSWAVFRGDDGVVPIPQQSSKP-VE 121

Query: 130 ITEAEERRINVLRQW 144
               EE  +  LR+W
Sbjct: 122 FGPEEEPSVEELRKW 136

POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. A second OB fold has not been predicted in S. pombe POT1. OnTEBP binds the extreme 3-prime end of telomeric DNA. It is heterodimeric and contains four OB folds - three in the alpha subunit (two in the N-terminal domain and one in the C-terminal domain) and one in the beta subunit. OB1Nalpha, together with the second OB fold of the N-terminal domain of OnTEBP alpha subunit and the beta subunit OB fold, forms a deep cleft that binds ssDNA. Length = 138
>gnl|CDD|217218 pfam02765, Telo_bind, Telomeric single stranded DNA binding POT1/CDC13 Back     alignment and domain information
>gnl|CDD|214949 smart00976, Telo_bind, Telomeric single stranded DNA binding POT1/CDC13 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 401
KOG4757 522 consensus Predicted telomere binding protein [Gene 100.0
cd04497138 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f 100.0
PF02765146 POT1: Telomeric single stranded DNA binding POT1/C 100.0
cd04498123 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds simil 99.86
PRK12366637 replication factor A; Reviewed 99.39
PRK12366 637 replication factor A; Reviewed 99.23
TIGR00617608 rpa1 replication factor-a protein 1 (rpa1). This f 99.16
PRK07218423 replication factor A; Provisional 99.12
PRK14699484 replication factor A; Provisional 99.03
PRK15491374 replication factor A; Provisional 98.99
PRK06386358 replication factor A; Reviewed 98.97
PRK07211485 replication factor A; Reviewed 98.86
PRK15491374 replication factor A; Provisional 98.76
PRK07211 485 replication factor A; Reviewed 98.54
PRK14699484 replication factor A; Provisional 98.53
cd04475101 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor 98.16
TIGR00617608 rpa1 replication factor-a protein 1 (rpa1). This f 98.07
PRK08402355 replication factor A; Reviewed 98.02
PRK06461129 single-stranded DNA-binding protein; Reviewed 98.0
PRK07218 423 replication factor A; Provisional 97.67
cd0449182 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil 97.66
PRK08402355 replication factor A; Reviewed 97.23
PRK06461129 single-stranded DNA-binding protein; Reviewed 96.82
cd0352475 RPA2_OBF_family RPA2_OBF_family: A family of oligo 96.8
KOG3416134 consensus Predicted nucleic acid binding protein [ 96.46
cd04497138 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f 96.44
PRK07217311 replication factor A; Reviewed 96.29
cd0448978 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol 95.8
cd04481106 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of unc 95.76
PRK07217311 replication factor A; Reviewed 95.61
PRK06386358 replication factor A; Reviewed 95.52
PF0133675 tRNA_anti-codon: OB-fold nucleic acid binding doma 95.51
PF02765146 POT1: Telomeric single stranded DNA binding POT1/C 95.36
cd04474104 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor 95.04
cd04476166 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds cor 94.84
cd0447895 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor 94.7
PF15489 1144 CTC1: CST, telomere maintenance, complex subunit C 94.66
cd0448584 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp 94.18
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 93.99
cd0449283 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol 93.2
cd0448392 hOBFC1_like hOBFC1_like: A subfamily of OB folds s 92.82
PF08646146 Rep_fac-A_C: Replication factor-A C terminal domai 91.94
cd0449182 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil 90.61
PF1374299 tRNA_anti_2: OB-fold nucleic acid binding domain 90.53
cd04475101 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor 89.71
cd0448773 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f 85.78
cd04474104 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor 85.72
cd0448875 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f 84.75
PRK07373449 DNA polymerase III subunit alpha; Reviewed 81.96
cd0448482 polC_OBF polC_OBF: A subfamily of OB folds corresp 80.65
>KOG4757 consensus Predicted telomere binding protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-46  Score=360.82  Aligned_cols=364  Identities=24%  Similarity=0.243  Sum_probs=273.4

Q ss_pred             CCCCCcceeeHHhhhhccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEE
Q 015760            3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLI   82 (401)
Q Consensus         3 ~~~~~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GDII   82 (401)
                      .-++.|+|..+++++.+.+..||+||||++++||++++|+||+||++|+||...+.||+|++|+++.++||.|+++||||
T Consensus         2 ~~~ds~k~Iri~da~kk~~tiVNl~GiVkef~pp~qs~g~D~~~tv~IvDp~~ss~gLtv~lfSkt~edLP~Ik~~GDii   81 (522)
T KOG4757|consen    2 DVRDSLKLIRISDALKKKNTIVNLIGIVKEFTPPRQSLGKDWVCTVYIVDPDYSSIGLTVHLFSKTGEDLPVIKQVGDII   81 (522)
T ss_pred             CcccchheeechHHHHhcCcEEEEEEEEEeccChhhccCCceEEEEEEeCCCCCCCCcEEEEecCchhhCccccccCcEE
Confidence            34688999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             EEeeEEEEEecCeeEEEeecCce-EEEEEeCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccc
Q 015760           83 LLKNVMIKKHQAELSAVFYKDSS-SFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSL  161 (401)
Q Consensus        83 ~l~rvki~~~~g~~~~~~~~~~s-s~~lf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~~~L  161 (401)
                      +|||+|||.|+.+.+|+++..|+ +|++|+|+ +.+..|||+|+. |-++       .+||+|++.+.....+ ++ ..+
T Consensus        82 llhRiKiq~y~~rtqgl~s~~fss~~~~Feg~-svd~i~~qssp~-f~~t-------~nlrew~a~~~s~~w~-c~-t~~  150 (522)
T KOG4757|consen   82 LLHRIKIQSYRDRTQGLCSDQFSSAWALFEGN-SVDTICYQSSPR-FMKT-------GNLREWFALYKSKIWD-CQ-TNL  150 (522)
T ss_pred             EEEEEEEEEhhhhhhhhhhcchhhhhhhhcCC-CCCccCCCCchh-hhcc-------chHHHHHHHHhCcccc-cc-cCH
Confidence            99999999999999999998764 59999999 889999999987 8777       8999999999887776 46 778


Q ss_pred             ccccCCceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcc-cCCCCCccccCCCCcHHhhhcCCCCccEEE
Q 015760          162 KDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDE-EHNPLPLHIESSPLDLETLRNFFPVGTVLR  240 (401)
Q Consensus       162 ~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~~p~~G~~l~  240 (401)
                      .++.++..-.|.||+++.. ......|. .|||-|.+...++++...-- -+.-.|++.+.  ++...+..||..|.+.+
T Consensus       151 ~k~fel~cs~l~~q~v~g~-s~~~~~w~-lv~d~~~h~~~s~~~~~~~~~ySlr~~l~~~~--~~T~~~l~Fp~~g~ts~  226 (522)
T KOG4757|consen  151 HKNFELLCSSLARQNVTGL-SYPSVSWS-LVSDITPHQRCSFYAQVIKTWYSLRNPLLYVT--DPTENLLFFPMSGYTSS  226 (522)
T ss_pred             hHhhhhhcchhhhheeecc-ccccceee-eeecccccccccccccceeeEeeccccccccc--CchHhhhhcccCCceee
Confidence            8888888888888888887 55567777 79996655554444321100 01124566655  66677889998899888


Q ss_pred             EEecCcchhhhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEccCCChHHH-H--Hhh----------------h
Q 015760          241 VSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVW-D--YMR----------------E  301 (401)
Q Consensus       241 V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~~~d~~v~-~--l~r----------------~  301 (401)
                      +..+...++...+.+.+|.-+..+|+....+.     .|.++  ++.+.  |..-. +  ++.                |
T Consensus       227 ~r~~rv~~e~~i~ilq~~~d~~~~Nl~~e~D~-----~f~~~--~~sl~--dh~~lsrc~~~~~saprl~~sl~lhc~~e  297 (522)
T KOG4757|consen  227 SRWDRVSEEFSICILQDEHDFYCRNLIKEGDY-----VFMKN--VRSLI--DHLGLSRCILHGDSAPRLNMSLELHCSEE  297 (522)
T ss_pred             eeeecccccccchhccccchhhhhhhcccccc-----ccccc--chhhh--HHHHHHHHHHHhhccccccceeEeecCcc
Confidence            88777777777777888888888888763222     22221  11111  11100 0  000                1


Q ss_pred             hhcCCCCCCCCcCCCCCCcccccccCCCccccHHHHhcCCCCCceEE-EEEEEEE---eeCCCccccccCCCceEEEEEE
Q 015760          302 RISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCC-CIVRVVS---IHPFQAEHYSSPNGSSEYTMKL  377 (401)
Q Consensus       302 r~~~~~~~~p~~~~p~~~~~t~~~~~~~p~ttL~dIL~~~~~~~kfr-~~VRVv~---~~P~~~~df~~~~g~~~~~~~L  377 (401)
                      .+..++..+.  .+-.++..|.+++..+|+++|||+++...++.||| |.||+|+   .+|..+|.+.--+    -.+.-
T Consensus       298 hll~ev~~e~--r~~~q~~~tgi~~v~a~fvsl~Ds~t~~~vt~k~R~~vvrfva~~~~~P~sve~l~~i~----i~l~~  371 (522)
T KOG4757|consen  298 HLLNEVKPEK--RLYVQNCQTGIEAVIAPFVSLMDSETPFIVTEKKRTCVVRFVAHVINYPASVELLTIIT----ILLAP  371 (522)
T ss_pred             hhhcccCccc--ceeecccccCcchhhcccchhhhhccccccchhcceeeeeehhhcccccchhhhhhhhh----hhhHH
Confidence            1111221111  11245778889999999999999999888999999 9999999   9999999985331    12333


Q ss_pred             EEeCCCceEEEEEeccccc
Q 015760          378 TLEDPTARIHALLCGKEWV  396 (401)
Q Consensus       378 ~leD~t~~i~~~v~~~da~  396 (401)
                      +.+|.++|.|+.++..|..
T Consensus       372 ic~l~n~r~H~~l~~le~s  390 (522)
T KOG4757|consen  372 ICNLLNPRKHRLLVQLEDS  390 (522)
T ss_pred             Hhhhhchhhhhhhhhhccc
Confidence            4555566666655555544

>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) Back     alignment and domain information
>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold [] Back     alignment and domain information
>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1) Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1) Back     alignment and domain information
>PRK07218 replication factor A; Provisional Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>PRK06386 replication factor A; Reviewed Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PRK14699 replication factor A; Provisional Back     alignment and domain information
>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) Back     alignment and domain information
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1) Back     alignment and domain information
>PRK08402 replication factor A; Reviewed Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>PRK07218 replication factor A; Provisional Back     alignment and domain information
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) Back     alignment and domain information
>PRK08402 replication factor A; Reviewed Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only] Back     alignment and domain information
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP) Back     alignment and domain information
>PRK07217 replication factor A; Reviewed Back     alignment and domain information
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit Back     alignment and domain information
>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) Back     alignment and domain information
>PRK07217 replication factor A; Reviewed Back     alignment and domain information
>PRK06386 replication factor A; Reviewed Back     alignment and domain information
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands Back     alignment and domain information
>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold [] Back     alignment and domain information
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PF15489 CTC1: CST, telomere maintenance, complex subunit CTC1 Back     alignment and domain information
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) Back     alignment and domain information
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) Back     alignment and domain information
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing Back     alignment and domain information
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) Back     alignment and domain information
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain Back     alignment and domain information
>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ Back     alignment and domain information
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) Back     alignment and domain information
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG Back     alignment and domain information
>PRK07373 DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
1xjv_A294 Crystal Structure Of Human Pot1 Bound To Telomeric 2e-15
3kjo_A299 Crystal Structure Of Hpot1v2-Dtrud(Agggttag) Length 2e-15
>pdb|1XJV|A Chain A, Crystal Structure Of Human Pot1 Bound To Telomeric Single- Stranded Dna (Ttagggttag) Length = 294 Back     alignment and structure 
Iteration: 1

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 24  VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83
           VN+ GVV  F  P  S+GTDY  V+ IVD  Q + +L   +F+ + + LP +    D++ 
Sbjct: 18  VNVYGVVKFFKPPYLSKGTDYCSVVTIVD--QTNVKLTCLLFSGNYEALPIIYKNGDIVR 75
Query: 84  LKNVMIKKHQAELSAVFYKDSSSFA--LFDGNSGSNLLPYQSSPQRFEITEAEERRINVL 141
              + I+ ++ E   +    SS FA   F+G  G+ ++P ++S + F  T  + + +  L
Sbjct: 76  FHRLKIQVYKKETQGI---TSSGFASLTFEGTLGAPIIP-RTSSKYFNFTTEDHKMVEAL 131
Query: 142 RQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVP 199
           R W       S +   LL L D+   +YFDL C++   +  D    ++L VWDGT  P
Sbjct: 132 RVWASTHMSPSWT---LLKLCDVQPMQYFDLTCQLLGKAEVDGAS-FLLKVWDGTRTP 185
>pdb|3KJO|A Chain A, Crystal Structure Of Hpot1v2-Dtrud(Agggttag) Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
1xjv_A294 Protection of telomeres 1; protein-DNA complex, si 4e-53
1jb7_A495 Telomere-binding protein alpha subunit; DNA-protei 4e-48
1qzg_A187 Protection of telomeres protein 1; protrein-DNA co 3e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Length = 294 Back     alignment and structure
 Score =  177 bits (451), Expect = 4e-53
 Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 40/300 (13%)

Query: 23  KVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLI 82
            VN+ GVV  F  P  S+GTDY  V+ IVD +  + +L   +F+ + + LP +    D++
Sbjct: 17  IVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT--NVKLTCLLFSGNYEALPIIYKNGDIV 74

Query: 83  LLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLR 142
               + I+ ++ E   +     +S   F+G  G+ ++P  SS   F  T  + + +  LR
Sbjct: 75  RFHRLKIQVYKKETQGITSSGFASL-TFEGTLGAPIIPRTSSK-YFNFTTEDHKMVEALR 132

Query: 143 QWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLS 202
            W          +  LL L D+   +YFDL C++   +  D    ++L VWDGT  P  S
Sbjct: 133 VW---ASTHMSPSWTLLKLCDVQPMQYFDLTCQLLGKAEVD-GASFLLKVWDGTRTPFPS 188

Query: 203 IPGKLED---EEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGK 259
               ++D   E        +++  +D+    N   V   L+V                G 
Sbjct: 189 WRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKV----------------GS 232

Query: 260 WVRIRNMSCQVSS------------GMWHGLLQSSSKIRLFSDNDNVVWDYMRERISGGH 307
           ++RI ++  ++ S               HG       IR+  ++++ V D +++ +   +
Sbjct: 233 FLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDV-DQLKKDLESAN 291
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Length = 495 Back     alignment and structure
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Length = 187 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
1jb7_A495 Telomere-binding protein alpha subunit; DNA-protei 100.0
1xjv_A294 Protection of telomeres 1; protein-DNA complex, si 100.0
1qzg_A187 Protection of telomeres protein 1; protrein-DNA co 100.0
4hik_A143 Protection of telomeres protein 1; specificity, pl 99.96
4gop_C444 Putative uncharacterized protein; OB fold, ssDNA b 99.18
2k50_A115 Replication factor A related protein; uncharacteri 98.52
1jmc_A246 Protein (replication protein A (RPA)); human ssDNA 98.5
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 98.37
1jmc_A246 Protein (replication protein A (RPA)); human ssDNA 98.22
4gop_C444 Putative uncharacterized protein; OB fold, ssDNA b 98.2
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 98.19
2kbn_A109 Conserved protein; nucleic acid binding protein, b 97.86
3dm3_A105 Replication factor A; probably plays AN essential 97.77
3e0e_A97 Replication protein A; structural genomics, PSI-2, 97.62
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 97.52
2k50_A115 Replication factor A related protein; uncharacteri 97.31
2kbn_A109 Conserved protein; nucleic acid binding protein, b 97.3
1wjj_A145 Hypothetical protein F20O9.120; DNA-binding protei 97.27
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 97.25
1wjj_A145 Hypothetical protein F20O9.120; DNA-binding protei 96.93
3dm3_A105 Replication factor A; probably plays AN essential 95.92
3e0e_A97 Replication protein A; structural genomics, PSI-2, 95.4
1xjv_A294 Protection of telomeres 1; protein-DNA complex, si 95.03
1ynx_A114 Replication factor-A protein 1; canonical OB fold, 94.84
3u4z_A109 Telomerase-associated protein 82; TEB1, processivi 94.47
1qzg_A187 Protection of telomeres protein 1; protrein-DNA co 94.12
1ynx_A114 Replication factor-A protein 1; canonical OB fold, 94.04
1l1o_C181 Replication protein A 70 kDa DNA-binding subunit; 93.54
1miu_A738 BRCA2, breast cancer type 2 susceptibility protein 93.4
4gop_B136 Putative uncharacterized protein; OB fold, ssDNA b 93.17
3kdf_D132 Replication protein A 32 kDa subunit; wheat GERM c 92.68
3u58_A213 Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1 91.73
3ebe_A200 Protein MCM10 homolog; OB-fold, zinc finger, CCCH, 91.05
4hik_A143 Protection of telomeres protein 1; specificity, pl 90.48
2pi2_A270 Replication protein A 32 kDa subunit; FULL-length 89.64
1jb7_A 495 Telomere-binding protein alpha subunit; DNA-protei 89.15
3u50_C172 Telomerase-associated protein 82; TEB1, processivi 83.82
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Back     alignment and structure
Probab=100.00  E-value=2.2e-78  Score=620.53  Aligned_cols=348  Identities=19%  Similarity=0.250  Sum_probs=300.7

Q ss_pred             CCCCCcceeeHHhhhhccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCC-----CCe-----EEEEecCCCCCC
Q 015760            3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQS-----PEL-----LVNIFTSSIDQL   72 (401)
Q Consensus         3 ~~~~~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~-----~gl-----~v~iF~~~~e~L   72 (401)
                      +..++|+|++|++|....++.|||||||+|+++|++|+|+||+|+|+|+|+|+..     .||     +|+||++++++|
T Consensus        31 ~~~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L  110 (495)
T 1jb7_A           31 DKGHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL  110 (495)
T ss_dssp             -----CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS
T ss_pred             cccCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC
Confidence            4578999999999987789999999999999999999999999999999999982     389     999999999999


Q ss_pred             CCCCCCCCEEEEeeEEEEEecCeeEEEeecCc-eEEEEEeCCC------------CCCccccccCCCCCCCCHHHHHHHH
Q 015760           73 PRVLSPRDLILLKNVMIKKHQAELSAVFYKDS-SSFALFDGNS------------GSNLLPYQSSPQRFEITEAEERRIN  139 (401)
Q Consensus        73 P~v~~~GDII~l~rvki~~~~g~~~~~~~~~~-ss~~lf~~~~------------~~~~~P~~~s~~~~~~~~~e~~~v~  139 (401)
                      |.|.++||||+|||++|+.|+|+++++++.++ |+||||++..            +.++.||+.|+.+|+++++|++++.
T Consensus       111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~  190 (495)
T 1jb7_A          111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ  190 (495)
T ss_dssp             CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHH
T ss_pred             CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHH
Confidence            99988999999999999999999999999876 8999999987            7789999988667999999999999


Q ss_pred             HHHHhhhcCccc---CCCcccccccc-cccCCceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCC
Q 015760          140 VLRQWCVGFEFS---SGSNDYLLSLK-DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPL  215 (401)
Q Consensus       140 ~Lr~W~~~~~~~---~~~~~f~~~L~-di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~  215 (401)
                      .||+|+.++...   .++++| .+|+ ||++++||||+||||+++ ..++++++|||||||++|+++             
T Consensus       191 ~LR~W~~~~~~~~~~~~~~~f-~~L~~di~~~~f~DLv~qVv~~~-~~d~~~~~L~VwDgT~~~~~~-------------  255 (495)
T 1jb7_A          191 NLRKWANQYFSSYSVISSDMY-TALNKAQAQKGDFDVVAKILQVH-ELDEYTNELKLKDASGQVFYT-------------  255 (495)
T ss_dssp             HHHHHHHHHHHHSCSSCGGGS-CCGGGGGGCSSCEEEEEEEEEEE-ECSSSEEEEEEEETTCCEEEE-------------
T ss_pred             HHHHHHHhcccccccccccch-hhhhhhhccCCceeEEEEEeEEe-ccCCCeEEEEEEeCCCCCcce-------------
Confidence            999999987653   356678 8999 999999999999999999 558899999999999998864             


Q ss_pred             CccccCCCCcHHhhhcCCCC--ccEEEEEecCcchhhh-cccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceE------
Q 015760          216 PLHIESSPLDLETLRNFFPV--GTVLRVSTDRSYENFG-RYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR------  286 (401)
Q Consensus       216 ~~~~e~~~l~~~~~~~~p~~--G~~l~V~~~~~~~~~~-~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~------  286 (401)
                                .+++|++|.+  |++++|..++..+... .+.++.|+|   +|+.          ++.++++++      
T Consensus       256 ----------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~  312 (495)
T 1jb7_A          256 ----------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAK  312 (495)
T ss_dssp             ----------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHH
T ss_pred             ----------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhc
Confidence                      2346889999  9999998886655433 577889999   5777          566677887      


Q ss_pred             EccCCChHHHHHhhhhhcCCCCCCCCcCCCCCCcccccc--cCCCccccHHHHhcC----CCCCce--EEEEEEEEEeeC
Q 015760          287 LFSDNDNVVWDYMRERISGGHGHMPIWTDPSSQFLTEVD--WVNVASVTLMKIATQ----LQGNVR--CCCIVRVVSIHP  358 (401)
Q Consensus       287 ~l~~~d~~v~~l~r~r~~~~~~~~p~~~~p~~~~~t~~~--~~~~p~ttL~dIL~~----~~~~~k--fr~~VRVv~~~P  358 (401)
                      +++++   +.+..  +       +|+++.++++.+|+++  |+++|+|||||||++    +++++|  |||+||||+|||
T Consensus       313 ~l~~~---~~~~~--~-------~~~~~~~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P  380 (495)
T 1jb7_A          313 IQDDH---SVEVA--S-------LKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEP  380 (495)
T ss_dssp             SCCCC---HHHHH--H-------TTSSSCSSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEES
T ss_pred             ccchh---hhhhh--h-------cccccCCCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEEecC
Confidence            77665   33321  2       4666777778899988  999999999999987    778888  999999999999


Q ss_pred             CCccccccC-----------CC-----ceEEEEEEEEeCCC-------ceEEEEEeccccccccc
Q 015760          359 FQAEHYSSP-----------NG-----SSEYTMKLTLEDPT-------ARIHALLCGKEWVRFQL  400 (401)
Q Consensus       359 ~~~~df~~~-----------~g-----~~~~~~~L~leD~t-------~~i~~~v~~~da~~f~~  400 (401)
                      +++||||++           .|     +++|||||||||+|       |||||||||+||+.||+
T Consensus       381 ~~i~df~~~~~~~~~~~~s~~g~~~~~~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~  445 (495)
T 1jb7_A          381 SDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFN  445 (495)
T ss_dssp             SSGGGGEEEEETTTTEEECSTTCGGGCEEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTS
T ss_pred             CCHHHhhhhhccccccccccccccCCCCceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecC
Confidence            999999943           23     67999999999999       99999999998888884
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Back     alignment and structure
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Back     alignment and structure
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A* Back     alignment and structure
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Back     alignment and structure
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A Back     alignment and structure
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3 Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A Back     alignment and structure
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila} Back     alignment and structure
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A Back     alignment and structure
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3 Back     alignment and structure
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A Back     alignment and structure
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B Back     alignment and structure
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila} Back     alignment and structure
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A Back     alignment and structure
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A* Back     alignment and structure
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Back     alignment and structure
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 401
d1xjva1140 b.40.4.3 (A:6-145) Protection of telomeres protein 2e-33
d1jb7a1169 b.40.4.3 (A:36-204) Telomere end binding protein a 2e-31
d1qzga_170 b.40.4.3 (A:) Protection of telomeres protein 1, P 6e-29
d1xjva2151 b.40.4.3 (A:149-299) Protection of telomeres prote 4e-15
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (301), Expect = 2e-33
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 24  VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83
           VN+ GVV  F  P  S+GTDY  V+ IVD +  + +L   +F+ + + LP +    D++ 
Sbjct: 18  VNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT--NVKLTCLLFSGNYEALPIIYKNGDIVR 75

Query: 84  LKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQ 143
              + I+ ++ E   +     +S   F+G  G+ ++P  SS   F  T  + + +  LR 
Sbjct: 76  FHRLKIQVYKKETQGITSSGFASLT-FEGTLGAPIIPRTSSK-YFNFTTEDHKMVEALRV 133

Query: 144 W 144
           W
Sbjct: 134 W 134
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Length = 169 Back     information, alignment and structure
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 170 Back     information, alignment and structure
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
d1jb7a1169 Telomere end binding protein alpha subunit {Oxytri 100.0
d1xjva1140 Protection of telomeres protein 1, Pot1 {Human (Ho 100.0
d1qzga_170 Protection of telomeres protein 1, Pot1 {Fission y 100.0
d1xjva2151 Protection of telomeres protein 1, Pot1 {Human (Ho 99.92
d1jmca2122 Replication protein A 70 KDa subunit (RPA70) {Huma 98.77
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 97.71
d1jb7a3167 Telomere end binding protein alpha subunit {Oxytri 97.66
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 97.62
d1jb7a2124 Telomere end binding protein alpha subunit {Oxytri 97.61
d1wjja_145 Hypothetical protein At4g28440 (F20O9.120) {Thale 97.36
d1wjja_145 Hypothetical protein At4g28440 (F20O9.120) {Thale 97.25
d1xjva1140 Protection of telomeres protein 1, Pot1 {Human (Ho 96.02
d1jb7a2124 Telomere end binding protein alpha subunit {Oxytri 95.66
d1jmca2122 Replication protein A 70 KDa subunit (RPA70) {Huma 94.89
d1jb7a1169 Telomere end binding protein alpha subunit {Oxytri 94.39
d1jmca1116 Replication protein A 70 KDa subunit (RPA70) {Huma 94.36
d1l1oc_178 Replication protein A 70 KDa subunit (RPA70) {Huma 94.19
d1jmca1116 Replication protein A 70 KDa subunit (RPA70) {Huma 92.25
d1qzga_170 Protection of telomeres protein 1, Pot1 {Fission y 89.83
d1xjva2151 Protection of telomeres protein 1, Pot1 {Human (Ho 88.69
d2pi2a1128 Replication protein A 32 KDa subunit (RPA32) fragm 83.6
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Telomere end binding protein alpha subunit
species: Oxytricha nova [TaxId: 200597]

Probab=100.00  E-value=3.5e-40  Score=290.64  Aligned_cols=142  Identities=21%  Similarity=0.340  Sum_probs=131.4

Q ss_pred             cceeeHHhhhhccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCC----------CCCeEEEEecCCCCCCCCCCC
Q 015760            8 GGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ----------SPELLVNIFTSSIDQLPRVLS   77 (401)
Q Consensus         8 y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~----------~~gl~v~iF~~~~e~LP~v~~   77 (401)
                      |+|++|++|....++.|||||||+|+++|++|+|+||+|+|+|+|+|++          ++||+|+||+++.++||.|.+
T Consensus         1 Y~y~~l~~a~~~~~~~vNv~GVV~~~~~p~~s~g~D~~~tl~I~D~S~~~~~~~~~~~~~~~l~v~~F~~~~~~LP~V~~   80 (169)
T d1jb7a1           1 YEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHR   80 (169)
T ss_dssp             CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCCCCE
T ss_pred             CeeeeHHHHHHhcCCeEEEEEEEeecCCceecCCCcEEEEEEEEeCCCCccccccccccCCceEEEEECCCHHHCCCCCC
Confidence            8999999998788999999999999999999999999999999999985          358999999999999999988


Q ss_pred             CCCEEEEeeEEEEEecCeeEEEeecCc-eEEEEEeCC------------CCCCccccccCCCCCCCCHHHHHHHHHHHHh
Q 015760           78 PRDLILLKNVMIKKHQAELSAVFYKDS-SSFALFDGN------------SGSNLLPYQSSPQRFEITEAEERRINVLRQW  144 (401)
Q Consensus        78 ~GDII~l~rvki~~~~g~~~~~~~~~~-ss~~lf~~~------------~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W  144 (401)
                      +||||+|||++|+.|||+++++++..+ ||||+|++.            .+.++.|||+|+++|+++++|+++++.||+|
T Consensus        81 ~GDII~l~rv~i~~~~g~~~~v~~~~~~SswavF~~~~~~~~~~~~~~~~~~~~~Pyq~S~~~~~~~~~d~~~v~~LR~W  160 (169)
T d1jb7a1          81 AGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQNLRKW  160 (169)
T ss_dssp             ETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHHHHHHH
T ss_pred             CCCEEEEEEEEEEEECCceeEEEccccceeEEEEeCCCCCcccccccccCCCCcccccccCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998654 899999984            3356899999999999999999999999999


Q ss_pred             hhcCc
Q 015760          145 CVGFE  149 (401)
Q Consensus       145 ~~~~~  149 (401)
                      +.+|.
T Consensus       161 a~~~~  165 (169)
T d1jb7a1         161 ANQYF  165 (169)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98764
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1jb7a3 b.40.4.3 (A:329-495) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wjja_ b.40.4.3 (A:) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Back     information, alignment and structure
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1xjva2 b.40.4.3 (A:149-299) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure