Citrus Sinensis ID: 015762

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPVIKGKKSELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY
cccccccccEEEEcccHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHccccccEEEEEccccccccccEEccccccccccHHHHHHHcccccccccccccccEEEEEcccccccEEEccccccccHHHHccHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccEEcEEEEEEEEccccccccccEEEccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHEEEccEEEEEEccccccccEEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccHHHHHHHHccccEEEEEEcccHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccEEEEEEEcc
cccEccccEEEEEcHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHccccccEEEEEccccccccccEEEccccHHHHHHHHHHHHHHHccccHHHcccccEEEEEEccccccEcHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccEEEEEEEEEEEccccccccccccccEEEEEEEcccccHcHHHHHHHHHHHHHHHHHcccEEEEEccccccccccEccEEEccccEEEEEccHHHHcccEEEEEEccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHccccccccEEEccccccccccccEEEccccccEEEEEEEccc
mieyydisgcyimrpwAISIWETMQKFFDAEIKKMkiqncyfplfvsptvlqkekdhiegfapeVAWVTksgesdlevpiairptsetvmypyfskwirghrdlplklNQWCNVVrwefsnptpfirsrEFLWQEGhtafatksEADDEILELYRRIYEEFLavpvikgkkselenskFVQIGVMVMVhgddkglmlppkvasVQVIVipvpykdadtqgIFDACTATVEKLCEAGiransdfrdnyspgwkyshwemkgvplrieigpkdlandQVRAVRrdngakidlprgsLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKmilapwcdeeevEKDVKARTKgemgaaktlcspleqpevpegtlcfasgkpakkwtywgrsy
MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAwvtksgesdlevpiairptsetvMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAfatkseaddEILELYRRIYEEFLavpvikgkkselenskFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGiransdfrdnyspGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRrdngakidlprgslVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKmilapwcdeeeVEKDVKARTKGEMGAAKtlcspleqpevpegtlcfasgkpakkwtywgrsy
MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPVIKGKKSELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSlvervkelleevqeSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY
**EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPVIKGKKSELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDE*********************************TLCFASGKPAKKWTYW****
*IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPVIKGKKSELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY
MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPVIKGKKSELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY
MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPVIKGKKSELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPVIKGKKSELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query401 2.2.26 [Sep-21-2011]
Q8I5R7746 Proline--tRNA ligase OS=P yes no 1.0 0.537 0.474 1e-123
P286681714 Bifunctional glutamate/pr no no 0.997 0.233 0.456 1e-117
Q8CGC71512 Bifunctional glutamate/pr yes no 1.0 0.265 0.455 1e-114
P078141512 Bifunctional glutamate/pr yes no 1.0 0.265 0.436 1e-110
Q8SSD7520 Proline--tRNA ligase OS=E yes no 0.997 0.769 0.405 1e-102
A0Q2I3478 Proline--tRNA ligase OS=C yes no 0.967 0.811 0.377 6e-87
A8MLB3480 Proline--tRNA ligase OS=A yes no 0.970 0.810 0.377 2e-85
B8I5R4478 Proline--tRNA ligase OS=C yes no 0.967 0.811 0.383 1e-84
Q8ESQ5478 Proline--tRNA ligase OS=O yes no 0.967 0.811 0.378 4e-84
Q81IE9476 Proline--tRNA ligase 2 OS yes no 0.967 0.815 0.370 9e-84
>sp|Q8I5R7|SYP_PLAF7 Proline--tRNA ligase OS=Plasmodium falciparum (isolate 3D7) GN=proRS PE=1 SV=1 Back     alignment and function desciption
 Score =  442 bits (1136), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/472 (47%), Positives = 298/472 (63%), Gaps = 71/472 (15%)

Query: 1   MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
           +IEYYDISGCYI+RP A  IWE +Q FF+ EIKK+ ++N YFPLFV+   L+KEK+HIEG
Sbjct: 275 LIEYYDISGCYILRPAAYYIWECVQAFFNKEIKKLNVENSYFPLFVTKNKLEKEKNHIEG 334

Query: 61  FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
           F+PEVAWVTK G+S+L   IAIRPTSET+MY  F KWIR +RDLPLKLNQW  VVRWEF 
Sbjct: 335 FSPEVAWVTKYGDSNLPEEIAIRPTSETIMYSVFPKWIRSYRDLPLKLNQWNTVVRWEFK 394

Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADD---EILELYRRIYEEFLAVPVIKGKKSE---- 173
            PTPFIR+REFLWQEGHTA   + EA     +IL+LYRR YEE+LAVP+IKG KSE    
Sbjct: 395 QPTPFIRTREFLWQEGHTAHKNEEEAVKLVFDILDLYRRWYEEYLAVPIIKGIKSEGEKF 454

Query: 174 -------------LENSKFVQ--------------------------------------- 181
                         EN + +Q                                       
Sbjct: 455 GGANFTSTAEAFISENGRAIQAATSHYLGTNFAKMFKIEFEDENEVKQYVHQTSWGCTTR 514

Query: 182 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 240
            IG+M+M HGDDKGL+LPP V+  +V+++P+ YK  D   I   C    + L  A I   
Sbjct: 515 SIGIMIMTHGDDKGLVLPPNVSKYKVVIVPIFYKTTDENAIHSYCKDIEKILKNAQINCV 574

Query: 241 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 300
            D R +YSPG+K++HWE++G+P+RIE+GPKDL N+    VRRDN  K ++ + S++   +
Sbjct: 575 YDDRASYSPGYKFNHWELRGIPIRIEVGPKDLQNNSCVIVRRDNNEKCNVKKESVLLETQ 634

Query: 301 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCD----EEEVEKDVK 356
           ++L ++ ++LF+ AK++ D  I  V ++ E + AL ++KM+LAPWC+    EEE++K+ +
Sbjct: 635 QMLVDIHKNLFLKAKKKLDDSIVQVTSFSEVMNALNKKKMVLAPWCEDIATEEEIKKETQ 694

Query: 357 ----ARTKGEM---GAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401
                +T  E    GA K LC PL+QP +P    CF SGKPAK+W  +GRSY
Sbjct: 695 RLSLNQTNSETTLSGAMKPLCIPLDQPPMPPNMKCFWSGKPAKRWCLFGRSY 746
Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro) (By similarity). Functions in trans to edit the amino acid moiety from incorrectly charged Ala-tRNA(Pro). Has no activity on correctly charged Pro-tRNA(Pro) or Ala-tRNA(Ala).
Plasmodium falciparum (isolate 3D7) (taxid: 36329)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5
>sp|P28668|SYEP_DROME Bifunctional glutamate/proline--tRNA ligase OS=Drosophila melanogaster GN=Aats-glupro PE=1 SV=2 Back     alignment and function description
>sp|Q8CGC7|SYEP_MOUSE Bifunctional glutamate/proline--tRNA ligase OS=Mus musculus GN=Eprs PE=1 SV=4 Back     alignment and function description
>sp|P07814|SYEP_HUMAN Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5 Back     alignment and function description
>sp|Q8SSD7|SYP_ENCCU Proline--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU02_1360 PE=1 SV=1 Back     alignment and function description
>sp|A0Q2I3|SYP_CLONN Proline--tRNA ligase OS=Clostridium novyi (strain NT) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|A8MLB3|SYP_ALKOO Proline--tRNA ligase OS=Alkaliphilus oremlandii (strain OhILAs) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|B8I5R4|SYP_CLOCE Proline--tRNA ligase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|Q8ESQ5|SYP_OCEIH Proline--tRNA ligase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=proS PE=3 SV=1 Back     alignment and function description
>sp|Q81IE9|SYP2_BACCR Proline--tRNA ligase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=proS2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
224064768498 predicted protein [Populus trichocarpa] 1.0 0.805 0.733 0.0
449468780 511 PREDICTED: bifunctional glutamate/prolin 1.0 0.784 0.735 0.0
118486938498 unknown [Populus trichocarpa] 1.0 0.805 0.722 0.0
297817558 522 predicted protein [Arabidopsis lyrata su 1.0 0.768 0.715 0.0
15228692 530 prolyl-tRNA synthetase [Arabidopsis thal 1.0 0.756 0.718 0.0
356572846 515 PREDICTED: bifunctional aminoacyl-tRNA s 1.0 0.778 0.731 0.0
356505683 515 PREDICTED: bifunctional aminoacyl-tRNA s 1.0 0.778 0.726 0.0
357511557 529 Bifunctional aminoacyl-tRNA synthetase [ 1.0 0.758 0.726 0.0
388491056 529 unknown [Medicago truncatula] 1.0 0.758 0.724 0.0
224130834 508 predicted protein [Populus trichocarpa] 1.0 0.789 0.705 0.0
>gi|224064768|ref|XP_002301553.1| predicted protein [Populus trichocarpa] gi|222843279|gb|EEE80826.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/461 (73%), Positives = 374/461 (81%), Gaps = 60/461 (13%)

Query: 1   MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
           MIEYYDISGCYI+RPW++SIWETMQ FFD EIKKMKI+NCYFPLFVS +VLQKEKDHIEG
Sbjct: 38  MIEYYDISGCYILRPWSMSIWETMQAFFDVEIKKMKIKNCYFPLFVSSSVLQKEKDHIEG 97

Query: 61  FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
           FAPEVAWVTK+G+SDLEVP+AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS
Sbjct: 98  FAPEVAWVTKAGKSDLEVPVAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 157

Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFLAVPV----------- 166
           NPTPFIRSREFLWQEGHTAFA+K EAD+E   ILELYRRIYEEFLA+PV           
Sbjct: 158 NPTPFIRSREFLWQEGHTAFASKQEADEEVLQILELYRRIYEEFLAIPVIKGKKSEMEKF 217

Query: 167 -------------------IKGKKSELENSKFVQ-------------------------- 181
                              I+G  S      F +                          
Sbjct: 218 AGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKGMAWQNSWAYSTR 277

Query: 182 -IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN 240
            IGVMVMVHGDDKGL+LPPKVASVQVIV+PVPYKDADTQGIFDAC ATV+ LCEAGIRA 
Sbjct: 278 TIGVMVMVHGDDKGLVLPPKVASVQVIVVPVPYKDADTQGIFDACAATVDTLCEAGIRAE 337

Query: 241 SDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 300
           +DFR+NYSPGWKYSHWEMKGVPLRIEIGPKDLAN+QVRAVRRDN AK+D+ R SL+E+VK
Sbjct: 338 ADFRENYSPGWKYSHWEMKGVPLRIEIGPKDLANNQVRAVRRDNAAKVDISRDSLMEKVK 397

Query: 301 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 360
           ++L+++Q+ LF AAKQ+RDACIQ+VKTW EF EAL QRKMILAPWCDEEEVE+DVK RT+
Sbjct: 398 DMLDDIQQRLFDAAKQKRDACIQVVKTWGEFKEALSQRKMILAPWCDEEEVERDVKERTR 457

Query: 361 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401
           GEMGAAK+LCSP +QPE+PEGT CFASGKPAKKWTYWGRSY
Sbjct: 458 GEMGAAKSLCSPFDQPELPEGTACFASGKPAKKWTYWGRSY 498

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449468780|ref|XP_004152099.1| PREDICTED: bifunctional glutamate/proline--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118486938|gb|ABK95302.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297817558|ref|XP_002876662.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322500|gb|EFH52921.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15228692|ref|NP_191771.1| prolyl-tRNA synthetase [Arabidopsis thaliana] gi|30695549|ref|NP_850736.1| prolyl-tRNA synthetase [Arabidopsis thaliana] gi|6899922|emb|CAB71872.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gi|16648885|gb|AAL24294.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gi|22136084|gb|AAM91120.1| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gi|332646791|gb|AEE80312.1| prolyl-tRNA synthetase [Arabidopsis thaliana] gi|332646792|gb|AEE80313.1| prolyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356572846|ref|XP_003554576.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356505683|ref|XP_003521619.1| PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|357511557|ref|XP_003626067.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] gi|355501082|gb|AES82285.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388491056|gb|AFK33594.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224130834|ref|XP_002320936.1| predicted protein [Populus trichocarpa] gi|222861709|gb|EEE99251.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
TAIR|locus:2098053530 AT3G62120 [Arabidopsis thalian 0.548 0.415 0.759 2.3e-183
DICTYBASE|DDB_G0284197548 proS "prolyl-tRNA synthetase" 0.436 0.319 0.747 4.5e-125
GENEDB_PFALCIPARUM|PFL0670c746 PFL0670c "Bi-functional aminoa 0.436 0.234 0.685 6.9e-115
UNIPROTKB|Q8I5R7746 proRS "Proline--tRNA ligase" [ 0.436 0.234 0.685 6.9e-115
WB|WBGene00004189581 pars-1 [Caenorhabditis elegans 0.436 0.301 0.640 4.8e-114
MGI|MGI:978381512 Eprs "glutamyl-prolyl-tRNA syn 0.436 0.115 0.696 2.5e-111
UNIPROTKB|G3X6L91511 EPRS "Uncharacterized protein" 0.436 0.115 0.696 4.1e-111
POMBASE|SPBC19C7.06716 prs1 "cytoplasmic proline-tRNA 0.441 0.247 0.714 4.3e-111
RGD|13109521486 Eprs "glutamyl-prolyl-tRNA syn 0.436 0.117 0.691 1.3e-110
UNIPROTKB|F1LMJ91512 Eprs "Protein Eprs" [Rattus no 0.436 0.115 0.691 1.4e-110
TAIR|locus:2098053 AT3G62120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 934 (333.8 bits), Expect = 2.3e-183, Sum P(2) = 2.3e-183
 Identities = 167/220 (75%), Positives = 188/220 (85%)

Query:   182 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 241
             IGVM+M HGDDKGL+LPPKVASVQV+VIPVPYKDA+TQGI+DACTAT   LCEAGIRA  
Sbjct:   311 IGVMIMTHGDDKGLVLPPKVASVQVVVIPVPYKDANTQGIYDACTATASALCEAGIRAEE 370

Query:   242 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSXXXXXXX 301
             D RDNYSPGWKYS WEMKGVPLRIEIGP+DL NDQVR VRRDNG K D+PRGS       
Sbjct:   371 DLRDNYSPGWKYSDWEMKGVPLRIEIGPRDLENDQVRTVRRDNGVKEDIPRGSLVEHVKE 430

Query:   302 XXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKG 361
                    +++  AKQ+R+AC+Q VKTWDEF++AL ++K+ILAPWCDEEEVE+DVKARTKG
Sbjct:   431 LLEKIQQNMYEVAKQKREACVQEVKTWDEFIKALNEKKLILAPWCDEEEVERDVKARTKG 490

Query:   362 EMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401
             E GAAKTLCSP +QPE+PEGTLCFASGKPAKKWTYWGRSY
Sbjct:   491 ETGAAKTLCSPFDQPELPEGTLCFASGKPAKKWTYWGRSY 530
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004827 "proline-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006433 "prolyl-tRNA aminoacylation" evidence=IEA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
DICTYBASE|DDB_G0284197 proS "prolyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFL0670c PFL0670c "Bi-functional aminoacyl-tRNA synthetase, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I5R7 proRS "Proline--tRNA ligase" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
WB|WBGene00004189 pars-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:97838 Eprs "glutamyl-prolyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3X6L9 EPRS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
POMBASE|SPBC19C7.06 prs1 "cytoplasmic proline-tRNA ligase Prs1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
RGD|1310952 Eprs "glutamyl-prolyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMJ9 Eprs "Protein Eprs" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A5I768SYP_CLOBH6, ., 1, ., 1, ., 1, 50.36440.96750.8117yesno
Q63GI2SYP2_BACCZ6, ., 1, ., 1, ., 1, 50.37090.96750.8151yesno
A7FYU0SYP_CLOB16, ., 1, ., 1, ., 1, 50.36440.96750.8117yesno
C4ZC24SYP_EUBR36, ., 1, ., 1, ., 1, 50.36500.96500.8079yesno
B1L224SYP_CLOBM6, ., 1, ., 1, ., 1, 50.36870.96750.8117yesno
Q6HNZ7SYP2_BACHK6, ., 1, ., 1, ., 1, 50.36650.96750.8151yesno
B1IFI2SYP_CLOBK6, ., 1, ., 1, ., 1, 50.36220.96750.8117yesno
C1FM10SYP_CLOBJ6, ., 1, ., 1, ., 1, 50.36440.96750.8117yesno
Q73E50SYP2_BACC16, ., 1, ., 1, ., 1, 50.36870.96750.8151yesno
B3EE36SYP_CHLL26, ., 1, ., 1, ., 1, 50.35790.99000.8253yesno
B2A5T8SYP_NATTJ6, ., 1, ., 1, ., 1, 50.36280.97250.8074yesno
A0R9A0SYP2_BACAH6, ., 1, ., 1, ., 1, 50.36870.96750.8151yesno
Q81IE9SYP2_BACCR6, ., 1, ., 1, ., 1, 50.37090.96750.8151yesno
Q8ESQ5SYP_OCEIH6, ., 1, ., 1, ., 1, 50.37820.96750.8117yesno
A5UU62SYP_ROSS16, ., 1, ., 1, ., 1, 50.35150.96000.8020yesno
Q9L4Q8SYP_CLOSD6, ., 1, ., 1, ., 1, 50.36480.96000.8004yesno
Q18CD7SYP2_CLOD66, ., 1, ., 1, ., 1, 50.35140.97250.8108yesno
B4S9D5SYP_PROA26, ., 1, ., 1, ., 1, 50.34760.97750.8149yesno
C4Z1D7SYP_EUBE26, ., 1, ., 1, ., 1, 50.36650.97000.8121yesno
A8MLB3SYP_ALKOO6, ., 1, ., 1, ., 1, 50.37740.97000.8104yesno
B3EP23SYP_CHLPB6, ., 1, ., 1, ., 1, 50.34700.99000.8253yesno
A0Q2I3SYP_CLONN6, ., 1, ., 1, ., 1, 50.37740.96750.8117yesno
B4SG51SYP_PELPB6, ., 1, ., 1, ., 1, 50.34700.99000.8253yesno
B3ER64SYP_AMOA56, ., 1, ., 1, ., 1, 50.34520.98000.8004yesno
Q3ASP3SYP_CHLCH6, ., 1, ., 1, ., 1, 50.33830.99000.8253yesno
C3KUV8SYP_CLOB66, ., 1, ., 1, ., 1, 50.36650.96750.8117yesno
B3QPX3SYP_CHLP86, ., 1, ., 1, ., 1, 50.34700.99000.8253yesno
Q3IS99SYP_NATPD6, ., 1, ., 1, ., 1, 50.34050.98250.8174yesno
Q5V5H0SYP_HALMA6, ., 1, ., 1, ., 1, 50.33620.98500.8161yesno
A7GIT0SYP_CLOBL6, ., 1, ., 1, ., 1, 50.36220.96750.8117yesno
B3QYP1SYP_CHLT36, ., 1, ., 1, ., 1, 50.33690.97750.8149yesno
Q8KCD1SYP_CHLTE6, ., 1, ., 1, ., 1, 50.34920.99000.8253yesno
B8I5R4SYP_CLOCE6, ., 1, ., 1, ., 1, 50.38390.96750.8117yesno
A7NKX0SYP_ROSCS6, ., 1, ., 1, ., 1, 50.34490.96000.8020yesno
A9KL35SYP_CLOPH6, ., 1, ., 1, ., 1, 50.35350.96500.8113yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.150.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
PRK08661477 PRK08661, PRK08661, prolyl-tRNA synthetase; Provis 0.0
cd00778261 cd00778, ProRS_core_arch_euk, Prolyl-tRNA syntheta 1e-107
COG0442500 COG0442, ProS, Prolyl-tRNA synthetase [Translation 1e-105
cd00862202 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-antico 4e-89
TIGR00408472 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, fam 8e-78
TIGR00408472 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, fam 3e-57
cd00772264 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS 3e-48
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 4e-24
pfam0918068 pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-te 5e-23
smart0094667 smart00946, ProRS-C_1, Prolyl-tRNA synthetase, C-t 8e-22
pfam0312993 pfam03129, HGTP_anticodon, Anticodon binding domai 1e-20
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 5e-16
PRK09194565 PRK09194, PRK09194, prolyl-tRNA synthetase; Provis 8e-15
cd0073894 cd00738, HGTP_anticodon, HGTP anticodon binding do 2e-10
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 3e-09
PRK12325439 PRK12325, PRK12325, prolyl-tRNA synthetase; Provis 3e-09
COG0441589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 5e-09
cd0086091 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon 2e-06
TIGR00409568 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, fa 4e-05
PRK00413638 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed 6e-05
TIGR00418563 TIGR00418, thrS, threonyl-tRNA synthetase 8e-05
PRK03991613 PRK03991, PRK03991, threonyl-tRNA synthetase; Vali 1e-04
PRK12444639 PRK12444, PRK12444, threonyl-tRNA synthetase; Revi 2e-04
PRK12305575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 3e-04
cd0086194 cd00861, ProRS_anticodon_short, ProRS Prolyl-antic 5e-04
cd00779255 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase ( 0.001
TIGR00409 568 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, fa 0.002
>gnl|CDD|236327 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional Back     alignment and domain information 
 Score =  516 bits (1331), Expect = 0.0
 Identities = 193/461 (41%), Positives = 272/461 (59%), Gaps = 70/461 (15%)

Query: 1   MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
           + +Y  + GC +++P+  +IWE +QK  D   K+   +N YFPL +  ++L+KEK+H+EG
Sbjct: 27  LADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEG 86

Query: 61  FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
           FAPEVAWVT  G   LE  +A+RPTSET++YP + KWI+ +RDLPL  NQW NVVRWE +
Sbjct: 87  FAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWE-T 145

Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFLAVPVIKGKKSELE-- 175
              PF+R+REFLWQEGHTA AT+ EA++E   +LE+Y+  +E++LA+PVI GKK+E E  
Sbjct: 146 KTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYLAIPVIIGKKTEWEKF 205

Query: 176 --------------NSKFVQIG-------------------------------------- 183
                         + K +Q G                                      
Sbjct: 206 AGADYTYTIEAMMPDGKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYVHQTSWGVSTRL 265

Query: 184 --VMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 241
              ++M HGDDKGL+LPPK+A +QV+++P+  K+   + + +      E+L +AGIR   
Sbjct: 266 IGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKL 325

Query: 242 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 301
           D R + +PGWK++ WE+KGVPLRIEIGP+DL N+ V  VRRD   K  +P   LVE+V E
Sbjct: 326 DDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPE 385

Query: 302 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALG-QRKMILAPWCDEEEVEKDVKARTK 360
           LLEE+QE+L+  AK+  +     V T +EF EA+  +   + APWC +EE E+ +K  T 
Sbjct: 386 LLEEIQENLYEKAKEFLEENTVEVDTLEEFKEAIEEKGGFVKAPWCGDEECEEKIKEETG 445

Query: 361 GEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401
                A   C PLEQ    E   C   GKPAKK   + ++Y
Sbjct: 446 -----ATIRCIPLEQ----EKGKCIVCGKPAKKRVLFAKAY 477

Length = 477
>gnl|CDD|238401 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238439 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I Back     alignment and domain information
>gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I Back     alignment and domain information
>gnl|CDD|238395 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|220134 pfam09180, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal Back     alignment and domain information
>gnl|CDD|198014 smart00946, ProRS-C_1, Prolyl-tRNA synthetase, C-terminal Back     alignment and domain information
>gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|236405 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238379 cd00738, HGTP_anticodon, HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|237059 PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238437 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II Back     alignment and domain information
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|238438 cd00861, ProRS_anticodon_short, ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>gnl|CDD|238402 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 401
KOG4163551 consensus Prolyl-tRNA synthetase [Translation, rib 100.0
PRK08661477 prolyl-tRNA synthetase; Provisional 100.0
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 100.0
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 100.0
PRK12325439 prolyl-tRNA synthetase; Provisional 100.0
PRK09194565 prolyl-tRNA synthetase; Provisional 100.0
cd00862202 ProRS_anticodon_zinc ProRS Prolyl-anticodon bindin 100.0
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 100.0
PRK03991613 threonyl-tRNA synthetase; Validated 100.0
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 100.0
PRK12444639 threonyl-tRNA synthetase; Reviewed 100.0
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 100.0
PLN02837614 threonine-tRNA ligase 100.0
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 100.0
PLN02908686 threonyl-tRNA synthetase 100.0
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 100.0
PRK04173456 glycyl-tRNA synthetase; Provisional 100.0
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 100.0
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 100.0
CHL00201430 syh histidine-tRNA synthetase; Provisional 100.0
KOG2324457 consensus Prolyl-tRNA synthetase [Translation, rib 100.0
PLN02530487 histidine-tRNA ligase 100.0
KOG1637560 consensus Threonyl-tRNA synthetase [Translation, r 100.0
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 100.0
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 100.0
PLN02734684 glycyl-tRNA synthetase 100.0
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 100.0
PRK14894539 glycyl-tRNA synthetase; Provisional 100.0
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 100.0
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 100.0
PRK12420423 histidyl-tRNA synthetase; Provisional 100.0
PLN02972763 Histidyl-tRNA synthetase 100.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 100.0
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 100.0
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 100.0
KOG1936518 consensus Histidyl-tRNA synthetase [Translation, r 100.0
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 100.0
TIGR00414418 serS seryl-tRNA synthetase. This model represents 100.0
PRK05431425 seryl-tRNA synthetase; Provisional 100.0
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 100.0
PRK00960517 seryl-tRNA synthetase; Provisional 99.97
KOG2298599 consensus Glycyl-tRNA synthetase and related class 99.96
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.96
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 99.95
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 99.95
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 99.93
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.92
PLN02678448 seryl-tRNA synthetase 99.92
PF0918068 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; Int 99.91
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 99.9
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 99.87
PLN02320502 seryl-tRNA synthetase 99.87
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.86
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 99.86
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 99.84
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 99.83
cd00858121 GlyRS_anticodon GlyRS Glycyl-anticodon binding dom 99.78
PF0312994 HGTP_anticodon: Anticodon binding domain; InterPro 99.77
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 99.77
cd0086194 ProRS_anticodon_short ProRS Prolyl-anticodon bindi 99.73
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 99.72
PRK14938387 Ser-tRNA(Thr) hydrolase; Provisional 99.71
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 99.68
cd0086091 ThrRS_anticodon ThrRS Threonyl-anticodon binding d 99.65
cd0073894 HGTP_anticodon HGTP anticodon binding domain, as f 99.58
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.51
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.5
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 99.43
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.4
cd0085991 HisRS_anticodon HisRS Histidyl-anticodon binding d 99.3
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.25
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 99.13
PRK09350306 poxB regulator PoxA; Provisional 98.92
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 98.85
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.82
PRK07080317 hypothetical protein; Validated 98.79
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 98.36
KOG10351351 consensus eIF-2alpha kinase GCN2 [Translation, rib 98.36
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 98.36
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 98.32
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 98.32
PRK06462335 asparagine synthetase A; Reviewed 98.2
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 98.18
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 98.15
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 98.11
TIGR00459583 aspS_bact aspartyl-tRNA synthetase, bacterial type 98.07
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 98.07
PLN02903652 aminoacyl-tRNA ligase 98.05
PTZ00417585 lysine-tRNA ligase; Provisional 98.03
PRK00476588 aspS aspartyl-tRNA synthetase; Validated 98.02
PTZ00385659 lysyl-tRNA synthetase; Provisional 98.01
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 97.99
PLN02502553 lysyl-tRNA synthetase 97.97
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 97.96
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 97.95
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 97.93
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 97.9
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 97.88
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 97.86
PF12745273 HGTP_anticodon2: Anticodon binding domain of tRNAs 97.85
PRK12445505 lysyl-tRNA synthetase; Reviewed 97.84
PLN02850530 aspartate-tRNA ligase 97.79
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 97.72
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 97.71
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 97.69
COG0173585 AspS Aspartyl-tRNA synthetase [Translation, riboso 97.66
PLN02603565 asparaginyl-tRNA synthetase 97.64
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 97.6
PTZ00425586 asparagine-tRNA ligase; Provisional 97.55
PLN02221572 asparaginyl-tRNA synthetase 97.52
PLN02532633 asparagine-tRNA synthetase 97.43
PTZ00401550 aspartyl-tRNA synthetase; Provisional 97.38
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 97.04
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 97.02
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 96.69
KOG2411628 consensus Aspartyl-tRNA synthetase, mitochondrial 96.43
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 96.38
KOG1885560 consensus Lysyl-tRNA synthetase (class II) [Transl 95.97
KOG0554446 consensus Asparaginyl-tRNA synthetase (mitochondri 95.95
KOG0556533 consensus Aspartyl-tRNA synthetase [Translation, r 95.7
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 95.38
PF0918168 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; Int 95.06
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 93.67
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 92.22
PLN02788402 phenylalanine-tRNA synthetase 89.48
PRK06253529 O-phosphoseryl-tRNA synthetase; Reviewed 89.04
KOG0555545 consensus Asparaginyl-tRNA synthetase [Translation 86.82
COG2024 536 Phenylalanyl-tRNA synthetase alpha subunit (archae 85.04
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 84.84
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 81.63
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-119  Score=871.09  Aligned_cols=399  Identities=67%  Similarity=1.212  Sum_probs=387.1

Q ss_pred             CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762            1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI   80 (401)
Q Consensus         1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l   80 (401)
                      |+|||+++|||+++|++++||+.|+.+++..+++.|++++|||+|++.+++++++.|+++|+||++|||..|+.+|++++
T Consensus        81 mieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepi  160 (551)
T KOG4163|consen   81 MIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPI  160 (551)
T ss_pred             hheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEEEecCCcccccce
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762           81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI  157 (401)
Q Consensus        81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i  157 (401)
                      ++|||||+.|+++|++|++||||||+|+|||+||.|||.+++.||+|+|||+|||+||+|++.++|++|   ||++|.++
T Consensus       161 aiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~v  240 (551)
T KOG4163|consen  161 AIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARV  240 (551)
T ss_pred             eeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999   99999999


Q ss_pred             HHHhCcccEEecCCCCcccc------------------------------ch----------------------------
Q 015762          158 YEEFLAVPVIKGKKSELENS------------------------------KF----------------------------  179 (401)
Q Consensus       158 ~~~l~~ipv~~g~k~~~e~f------------------------------nF----------------------------  179 (401)
                      |.+++++||+.|+|++.|+|                              ||                            
T Consensus       241 y~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~~~g~~~fv~QnSWg~sT  320 (551)
T KOG4163|consen  241 YEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIVFEDPGEGEKEFVWQNSWGLST  320 (551)
T ss_pred             HHhhhccccccCccchhhhccCCcceEEEeeeeccccccccccchhhhhHHHHHhhceeecCCCccchhheeeccccccc
Confidence            99999999999999999998                              33                            


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCC----hhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHH
Q 015762          180 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDAD----TQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSH  255 (401)
Q Consensus       180 Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~----~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~  255 (401)
                      |.||+++|.||||+||+|||++||+||+|||++.++..    .+.+.++|..+.++|..+|||++.|+|+++++||||++
T Consensus       321 RtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnh  400 (551)
T KOG4163|consen  321 RTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNH  400 (551)
T ss_pred             ceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCceEeecccccCCCCccccc
Confidence            99999999999999999999999999999999876542    46789999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHh
Q 015762          256 WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEAL  335 (401)
Q Consensus       256 ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~  335 (401)
                      ||++|||+||+|||+|+++++|++.+||+++|.+|++++|+..|+++|++||.+||++|++.+++|++.|++|+||+++|
T Consensus       401 wElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~~~v~elLe~iq~~m~~kA~~~rds~~~~v~~~~eF~~aL  480 (551)
T KOG4163|consen  401 WELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLEKTVKELLEKIQTNLYEKAKEKRDSHIVKVNTWEEFVKAL  480 (551)
T ss_pred             eeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeeeHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEeecCCChhHHHHHHHhhccC-------cCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015762          336 GQRKMILAPWCDEEEVEKDVKARTKGE-------MGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY  401 (401)
Q Consensus       336 ~~~~~~~~pwc~~~~~e~~ik~~~~~~-------~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~~~~~~~rsY  401 (401)
                      ++|+++++||||..+||++||+.|++.       +|||++|||||+||.  .+.+|++||++|+.|+||||||
T Consensus       481 ~~k~iilaPwcg~~ecE~~IK~~s~r~e~ge~apsmGAKtlCiPf~qpe--~~~kcl~cg~~ak~~~lfGRSY  551 (551)
T KOG4163|consen  481 DQKKIILAPWCGEIECEKDIKKRTARDEDGEEAPSMGAKTLCIPFEQPE--LGEKCLCCGKPAKKYTLFGRSY  551 (551)
T ss_pred             ccCCEEEccccCcHHHHHHHHhhhccccCCCCcccCCceeeeecCCCCC--CccceeccCCccceEEEecccC
Confidence            999999999999999999999999753       699999999999995  4668999999999999999999

>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [] Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PF09181 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR015264 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
4hvc_A519 Crystal Structure Of Human Prolyl-trna Synthetase I 2e-98
1h4q_A477 Prolyl-Trna Synthetase From Thermus Thermophilus Co 6e-74
1nj1_A501 Crystal Structure Of Prolyl-Trna Synthetase From Me 4e-51
3ial_A518 Giardia Lamblia Prolyl-Trna Synthetase In Complex W 1e-31
3ial_A518 Giardia Lamblia Prolyl-Trna Synthetase In Complex W 1e-13
1nj8_A459 Crystal Structure Of Prolyl-Trna Synthetase From Me 2e-26
1nj8_A459 Crystal Structure Of Prolyl-Trna Synthetase From Me 2e-18
2i4l_A458 Rhodopseudomonas Palustris Prolyl-trna Synthetase L 4e-07
2j3l_A 572 Prolyl-Trna Synthetase From Enterococcus Faecalis C 2e-06
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In Complex With Halofuginone And Atp Analogue Length = 519 Back     alignment and structure 
Iteration: 1

 Score =  355 bits (911), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/476 (41%), Positives = 271/476 (56%), Gaps = 75/476 (15%)
Query: 1   MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
           MIEY+DISGCYI+RPWA +IWE ++ FFDAEIKK+ ++NCYFP+FVS + L+KEK H+  
Sbjct: 44  MIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVAD 103
Query: 61  FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
           FAPEVAWVT+SG+++L  PIAIRPTSETVMYP ++KW++ HRDLP+KLNQWCNVVRWEF 
Sbjct: 104 FAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFK 163
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFLAVPVIKGKKSELEN- 176
           +P PF+R+REFLWQEGH+AFAT  EA +E   IL+LY ++YEE LA+PV+KG+K+E E  
Sbjct: 164 HPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKF 223
Query: 177 ---------SKFVQIGVMVMVHGDDKGL-----------------------------MLP 198
                      F+      +  G    L                              L 
Sbjct: 224 AGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLT 283
Query: 199 PKVASVQVIV------IPVPYKDADTQGIFDAC---TATVEKLCEAGIRANSDFR----- 244
            +   V  +V      + +P + A  Q +   C    A  E+  EA I   +D+R     
Sbjct: 284 TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLS 343
Query: 245 ----------DNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGS 294
                     DNYSPGWK++HWE+KGVP+R+E+GP+D+ + Q  AVRRD G K+ +    
Sbjct: 344 VNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENE 403
Query: 295 XXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVE-- 352
                         +LF  A +     + +  T ++F + L   K++  P+C E + E  
Sbjct: 404 AETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDW 463
Query: 353 -KDVKARTKG-EMGA----AKTLCSPLE-QPEVPEGTLCFASGKPAKKWTYWGRSY 401
            K   AR +  E GA    AK+LC P +   E+  G  C     PAK +T +GRSY
Sbjct: 464 IKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY 519
>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed With Trnapro(Cgg), Atp And Prolinol Length = 477 Back     alignment and structure
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Bound To Cysteine Sulfamoyl Adenylate Length = 501 Back     alignment and structure
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With Prolyl- Adenylate Length = 518 Back     alignment and structure
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With Prolyl- Adenylate Length = 518 Back     alignment and structure
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanocaldococcus Janaschii Length = 459 Back     alignment and structure
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanocaldococcus Janaschii Length = 459 Back     alignment and structure
>pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase Length = 458 Back     alignment and structure
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis Complexed With A Prolyl-Adenylate Analogue ('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine) Length = 572 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
3ial_A518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 0.0
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 1e-102
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 2e-87
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 3e-14
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 7e-14
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 1e-08
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 7e-07
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 3e-06
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 6e-06
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 8e-06
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 4e-04
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Length = 477 Back     alignment and structure
 Score =  560 bits (1444), Expect = 0.0
 Identities = 168/462 (36%), Positives = 247/462 (53%), Gaps = 72/462 (15%)

Query: 1   MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
           + +Y  + G  ++RP+  +IWE +Q+  D   K+   QN YFPLF+  + L+KE +H+EG
Sbjct: 27  LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEG 86

Query: 61  FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
           F+PE+A VT +G  +LE P+A+RPTSETV+   +SKWIR  RDLP  LNQW NVVRWE  
Sbjct: 87  FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEM- 145

Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFLAVPVIKGKKSELE-- 175
              PF+R+ EFLWQEGHTA AT+ EA++E   +L +Y R+  E+ A+PVI+G K+E E  
Sbjct: 146 RTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKF 205

Query: 176 --------------NSKFVQI----------------------GVMVMVH---------- 189
                         + K +Q                         +  VH          
Sbjct: 206 AGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRF 265

Query: 190 --------GDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 241
                   GDD+GL+LPP++A +QV+++P+ YKD   + + +A     + L   G+R + 
Sbjct: 266 IGAIIMTHGDDRGLVLPPRLAPIQVVIVPI-YKDESRERVLEAAQGLRQALLAQGLRVHL 324

Query: 242 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 301
           D RD ++PG+K+  WE+KGVP R+E+GPKDL   Q     R  G K  LP  +L E +  
Sbjct: 325 DDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPLAALPEALPG 383

Query: 302 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKG 361
            L+   E L+  A   R+   + V T++ F EA+ Q    LA  C ++  E+ ++  T  
Sbjct: 384 KLDAFHEELYRRALAFREDHTRKVDTYEAFKEAV-QEGFALAFHCGDKACERLIQEETT- 441

Query: 362 EMGAAKTLCSPLEQPEVPEGTLCFASGKPAK--KWTYWGRSY 401
               A T C P E    PE   C   G+P+   K   + ++Y
Sbjct: 442 ----ATTRCVPFEAE--PEEGFCVRCGRPSAYGKRVVFAKAY 477
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Length = 518 Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459 Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Length = 572 Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Length = 458 Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Length = 471 Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Length = 465 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Length = 460 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
4hvc_A519 Bifunctional glutamate/proline--tRNA ligase; ligas 100.0
3ial_A518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 100.0
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 100.0
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 100.0
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 100.0
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 100.0
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 100.0
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 100.0
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 100.0
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 100.0
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 100.0
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 100.0
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 100.0
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 100.0
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 100.0
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 100.0
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 100.0
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 100.0
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 100.0
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 100.0
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 100.0
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 100.0
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 100.0
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 100.0
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.98
3err_A536 Fusion protein of microtubule binding domain from 99.97
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 99.97
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 99.97
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 99.96
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 99.94
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 99.87
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 99.77
1v95_A130 Nuclear receptor coactivator 5; coactivator indepe 99.73
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.66
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.38
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 99.22
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 98.93
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 98.93
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 98.88
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 98.82
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 98.74
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 98.64
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 98.59
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 98.33
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 98.3
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 98.3
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 98.23
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 98.06
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 98.05
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 98.03
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 98.01
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 97.99
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 97.88
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 97.63
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.52
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 97.45
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.23
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.73
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.72
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.71
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.62
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 96.37
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 95.91
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 94.08
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 93.63
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 93.63
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 92.8
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 92.4
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.1e-100  Score=790.35  Aligned_cols=401  Identities=52%  Similarity=1.014  Sum_probs=370.2

Q ss_pred             CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762            1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI   80 (401)
Q Consensus         1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l   80 (401)
                      |+|+++++|+++|+|.|+.+|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|++.|+.+|++++
T Consensus        44 lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l  123 (519)
T 4hvc_A           44 MIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPI  123 (519)
T ss_dssp             CEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEE
T ss_pred             CeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccce
Confidence            57888999999999999999999999999999999999999999999999988899999999999999998875566789


Q ss_pred             EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762           81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI  157 (401)
Q Consensus        81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i  157 (401)
                      +||||+|++++++|++|++||++||+|++|||+|||||.+|++||+|+|||+|+|+|++|+++++|++|   ++++|.++
T Consensus       124 ~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i  203 (519)
T 4hvc_A          124 AIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQV  203 (519)
T ss_dssp             EECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             eeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998   88999999


Q ss_pred             HHHhCcccEEecCCCCcccc------------------------------c----h------------------------
Q 015762          158 YEEFLAVPVIKGKKSELENS------------------------------K----F------------------------  179 (401)
Q Consensus       158 ~~~l~~ipv~~g~k~~~e~f------------------------------n----F------------------------  179 (401)
                      |+.++++|+..+.++++++|                              +    |                        
T Consensus       204 ~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~~vh~~~~Gi~  283 (519)
T 4hvc_A          204 YEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLT  283 (519)
T ss_dssp             HHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEEECEEEEEEEE
T ss_pred             HHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecccccccchhhhhcCcEEeccccCCCEEEEEEccccHH
Confidence            99986799988777766654                              0    1                        


Q ss_pred             -HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCC----CChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHH
Q 015762          180 -VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKD----ADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYS  254 (401)
Q Consensus       180 -Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~----~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~  254 (401)
                       |+|++|+++|+|++|++||+++||+||+|||++.++    ..++++.++|.+|++.|+++||||++|++++.++|+||+
T Consensus       284 ~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~  363 (519)
T 4hvc_A          284 TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFN  363 (519)
T ss_dssp             THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred             HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence             999999999999999999999999999999998421    112568899999999999999999999997558999999


Q ss_pred             HHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHH
Q 015762          255 HWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEA  334 (401)
Q Consensus       255 ~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~  334 (401)
                      +|+++|||++|+||++|+++|+|+|++|++|++..|+++++++.|.++|++||++||+||++++++||+.++|||||+++
T Consensus       364 ~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~l~~ll~~i~~~l~~~a~~~~~~~~~~~~~~~~~~~~  443 (519)
T 4hvc_A          364 HWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKI  443 (519)
T ss_dssp             HHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCSHHHHHHH
T ss_pred             HHHhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCEEEeecCCChhHHHHHHHhhc--------cCcCCCeeecccCCCCC-CCCCCcccccCCCcceEEEEeecC
Q 015762          335 LGQRKMILAPWCDEEEVEKDVKARTK--------GEMGAAKTLCSPLEQPE-VPEGTLCFASGKPAKKWTYWGRSY  401 (401)
Q Consensus       335 ~~~~~~~~~pwc~~~~~e~~ik~~~~--------~~~~~~~~~c~p~~~~~-~~~~~~C~~~g~~a~~~~~~~rsY  401 (401)
                      |++||||++||||+.+||++||++|+        +.|||||+|||||+++. ...+++|++||+||+.|++|||||
T Consensus       444 ~~~~~~~~~~w~~~~~~e~~ik~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~a~~~~~~~~~y  519 (519)
T 4hvc_A          444 LDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY  519 (519)
T ss_dssp             HHTTCEEEEEECCCHHHHHHHHHHHHC----------CCCEEEEEESSCSSCCCTTCBCCC--CBCCEEEEEECBC
T ss_pred             HhcCCEEEEeccCCHHHHHHHHHHhccccccccccccCCceeeeccCCCcccCCCCCcccccCCcceEEEEEEEeC
Confidence            99999999999999999999999985        23589999999999974 334568999999999999999999
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 401
d1hc7a1127 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS 2e-23
d1nj8a3268 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) 9e-22
d1nj1a1127 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS 2e-21
d1g5ha1127 c.51.1.1 (A:343-469) The aaRS-like accessory subun 2e-20
d1hc7a2272 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) 8e-20
d1nj8a1126 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS 1e-19
d1nj1a3265 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS 1e-18
d1nj1a271 d.68.5.1 (A:411-481) C-terminal domain of ProRS {A 1e-17
d1hc7a374 d.68.5.1 (A:404-477) C-terminal domain of ProRS {T 2e-16
d1qf6a1110 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (Thr 2e-14
d1atia1111 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS 3e-12
d1qe0a195 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (His 2e-11
d1qf6a4291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 3e-11
d1nyra1113 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (Thr 4e-10
d1kmma199 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (His 2e-09
d1h4vb196 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (His 8e-09
d1wu7a197 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (His 3e-07
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Prolyl-tRNA synthetase (ProRS) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 92.5 bits (229), Expect = 2e-23
 Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 2/128 (1%)

Query: 193 KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWK 252
           +GL+LPP++A +QV+++P+ YKD   + + +A     + L   G+R + D RD ++PG+K
Sbjct: 1   RGLVLPPRLAPIQVVIVPI-YKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYK 59

Query: 253 YSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFV 312
           +  WE+KGVP R+E+GPKDL   Q     R  G +  LP  +L E +   L+   E L+ 
Sbjct: 60  FHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKE-TLPLAALPEALPGKLDAFHEELYR 118

Query: 313 AAKQRRDA 320
            A   R+ 
Sbjct: 119 RALAFRED 126
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 127 Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 126 Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265 Back     information, alignment and structure
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 71 Back     information, alignment and structure
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]} Length = 74 Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 111 Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 95 Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Length = 291 Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 113 Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 99 Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 100.0
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 100.0
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 100.0
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 100.0
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 99.97
d1nj1a1127 Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me 99.97
d1hc7a1127 Prolyl-tRNA synthetase (ProRS) domain {Thermus the 99.97
d1nj8a1126 Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M 99.96
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 99.94
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.93
d1hc7a374 C-terminal domain of ProRS {Thermus thermophilus [ 99.92
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.92
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.92
d1g5ha1127 The aaRS-like accessory subunit of mitochondrial p 99.91
d1nj1a271 C-terminal domain of ProRS {Arhaeon (Methanothermo 99.9
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 99.89
d1atia1111 Glycyl-tRNA synthetase (GlyRS), C-terminal domain 99.88
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 99.88
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 99.87
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 99.87
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 99.86
d1kmma199 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.76
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.75
d1qe0a195 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.75
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.73
d1h4vb196 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.72
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 99.68
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 99.58
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 98.37
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 98.35
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 98.22
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 98.18
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 98.16
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 98.02
d1v95a_130 Nuclear receptor coactivator 5 (KIAA1637) {Human ( 97.9
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.69
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 97.28
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 92.15
d1nj8a262 C-terminal domain of ProRS {Archaeon (Methanocaldo 91.84
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

Probab=100.00  E-value=5.3e-39  Score=305.53  Aligned_cols=171  Identities=33%  Similarity=0.696  Sum_probs=155.7

Q ss_pred             CCcc-cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCc
Q 015762            1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP   79 (401)
Q Consensus         1 l~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~   79 (401)
                      |+|+ ++++|+++|+|.|+++|+.|++++++.++++||++|.||+|.+.++|.++++|++++.++||.++..|+...+++
T Consensus        17 L~d~~~~v~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~   96 (268)
T d1nj8a3          17 IYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVK   96 (268)
T ss_dssp             SCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEE
T ss_pred             CcccCCCCCccEEECccHHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhh
Confidence            5666 578999999999999999999999999999999999999999999998888999999999999998877666788


Q ss_pred             EEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhhe-eccceeecCChhhHHHH---HHHHHH
Q 015762           80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDE---ILELYR  155 (401)
Q Consensus        80 l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~-q~e~~~~~~~~~~a~~e---il~~~~  155 (401)
                      ++||||+|++++.+|++++.|||+||+|+||+|+|||||.++..|++|.|||+ |.|+|+++++.++++++   ++++|.
T Consensus        97 ~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~~y~  176 (268)
T d1nj8a3          97 LALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYK  176 (268)
T ss_dssp             EEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             hhcccCCCchhHHhhhhhccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccccchhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988788999999997 66778888898888777   889999


Q ss_pred             HHHHHhCcccEEecCCC
Q 015762          156 RIYEEFLAVPVIKGKKS  172 (401)
Q Consensus       156 ~i~~~l~~ipv~~g~k~  172 (401)
                      ++|+.++ +|+..+.++
T Consensus       177 ~if~~l~-l~~~~~~~~  192 (268)
T d1nj8a3         177 KFFDTLG-IPYLISKRP  192 (268)
T ss_dssp             HHHHHHT-CCCEEEEEC
T ss_pred             HHHHhcC-cceeecccc
Confidence            9999986 887655443
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj8a2 d.68.5.1 (A:394-455) C-terminal domain of ProRS {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure