Citrus Sinensis ID: 015770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
Protein Sequence
MRIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQSAEVEKVDEKKLPNGKEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGENKQIETKGQGRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRSG
Secondary Structure (PSIPRED)
ccccccEEEEEcHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEEcccEEEcccccccHHHHHHHHHHccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEEcccccccccEEEEEEcccccHHHHHHHHHHccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcHHHHHHHHHHccHccccHHHHHHHcccccccccEEEEEEccccccccccccccHHccccccccccccccccccccccEEEEEEcccccccHHHcccccccHHHHHHHHHHHcccccccccEEEcccccccccccEEEEcccEEEccccHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccHccccHHHHHHHHHHHHHHccccccEEEEEEEEccccccccEEEEEcccccccccEEEEEEEccccHHHHHHHHHccccEcHHHHcccccccHHHHHHHHHccccccHHcccccccccccccccccccccccccccccEccccccccccccHHHHHcccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrigdpfrILITPAAAAAAaryhplhqakpllilshalhptrtrTRILItrtdtnnmstisaeddakygftrEEMYKEKLagtvnpygrhVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVcgggegtdgdvlifpemikyeglkesdvdsfvddvlvngkpwasgvqeglTGSYVFVCshgsrdkrcgvcgpaLIEKFNAEidsrglkdqifvkpcshigghkyagnlivyspdsegkimghwygyvtpddvpaiLDQHIAKGEIIERLwrgqlgqsaevekvdekklpngkeeskskkledgntqvtkenvtggccqgasgfscckdrssdvtgenkqietkgqgrlsswlgsfEQRDVLTAAAVVGAVATIAVAYSIYRRSG
Flexible Loop (DISEMBL)
MRIGDPFRILITPAAAAAAARYHPLHQAKPLLilshalhptrtrtrilitrtdtnnmstisaeddakygFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVeasdtdtlPKLLASalktrkddmtvKSLMTvcgggegtdgdvlIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWrgqlgqsaevekvdekklpngkeeskskkledgntqvtKENVTGGCCQGASGFSCCKDRSSDVtgenkqietkgqgrlssWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRSG
Low Complexity Region (SEG)
MRIGDPFRILITPaaaaaaaRYHPLHQAKPLLILSHALHPtrtrtrilitrtdtNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKEsdvdsfvddvlvNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQSAEVEKVDEKKLPNGKEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGENKQIETKGQGRLSSWLGSFEQRDvltaaavvgavatiavaYSIYRRSG
Disordered region (IsUnstruct)
*****PFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNM**I****DAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQL*************************************VTGGCCQGASGFSCC*********************LSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIY****
Disordered Region (DISOPRED)
****DPFRILITPAAAAAAAR*******************************************DAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLP*******************************DVLIFPEMIKYEGLKESDVDSFVDDVLVN***********LTGSYVFVCSHGSRDK****CGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQSAEVEKVDEKKLP********************ENVTGGCCQGASGFSC*************************WLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRS*
Disordered Region (DISEMBL)
MRIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQ******************************VTKENVTGGCCQGASGFSCC*********************LSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRSG
Disordered Region (DISPRO)
*RIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQSAEVEKVDEKKLP********************************************************GRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQSAEVEKVDEKKLPNGKEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGENKQIETKGQGRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	400	2.2.26 [Sep-21-2011]
Q6BPT6	273	Altered inheritance of mi	yes	no	0.26	0.380	0.388	7e-16
A5DK49	282	Altered inheritance of mi	N/A	no	0.255	0.361	0.396	2e-15
P38281	316	Actin patches distal prot	yes	no	0.332	0.420	0.306	7e-15
Q6FLQ5	313	Altered inheritance of mi	no	no	0.51	0.651	0.273	1e-14
C4Y1G7	273	Altered inheritance of mi	N/A	no	0.43	0.630	0.300	2e-14
C5DDQ4	332	Altered inheritance of mi	yes	no	0.26	0.313	0.361	2e-14
C5DZI5	326	Altered inheritance of mi	no	no	0.235	0.288	0.352	2e-11
Q6CXH7	322	Altered inheritance of mi	no	no	0.515	0.639	0.255	8e-11
D3XDD3	311	Altered inheritance of mi	N/A	no	0.245	0.315	0.336	4e-09
Q5XQP3	311	Altered inheritance of mi	N/A	no	0.235	0.302	0.339	7e-09

>sp|Q6BPT6|AIM32_DEBHA Altered inheritance of mitochondria protein 32 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=AIM32 PE=3 SV=2

 Score = 85.5 bits (210), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 183 QEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAG 242
           ++ +    + VC H  RD RCG   P L+++F   +  RGL   + V   SHIGGH YAG
Sbjct: 170 EQDIGKDLILVCGHTQRDVRCGKIAPILVDQFKKSLKDRGLDVDVGV--VSHIGGHAYAG 227

Query: 243 NLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQL 290
           N+I +  D   K +  WYG V P+ V  I+D+ +  G II+ L+RG++
Sbjct: 228 NVIYFPSDKTKKSI--WYGRVFPEKVAGIVDETVIGGNIIKELYRGEV 273

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|A5DK49|AIM32_PICGU Altered inheritance of mitochondria protein 32 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=AIM32 PE=3 SV=2

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 4/106 (3%)

Query: 183 QEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAG 242
           ++ +T   V +C HGSRD RCGV GP L  +F+  +    +   +     +H+GGH YAG
Sbjct: 176 EQDITDELVLICGHGSRDVRCGVMGPLLQREFDQVLTQENMSSHVKTGQITHVGGHAYAG 235

Query: 243 NLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRG 288
           N +VY P     +   WYG V P+DV  I+D  I +G II   +RG
Sbjct: 236 N-VVYFPRKGESV---WYGRVFPEDVQGIVDTTIKQGVIIRDKYRG 277

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

>sp|P38281|APD1_YEAST Actin patches distal protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APD1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 27/160 (16%)

Query: 142 GTDGDVLIFPEMIKYEGLKESDVDSFVD-------------DVLVNGKPWASGVQEGLTG 188
           GT  +VLI P  I    L+  DV++ +D             + L+  +P  +  +E    
Sbjct: 145 GTKNNVLILPYFIWLNDLRSDDVEATLDGLVPDLLDENISREKLLETRPNVAVARER--- 201

Query: 189 SYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGL--------KDQIFVKPCSHIGGHKY 240
           ++VF+CSH +RDKRCG+  P L + F++++   GL         + + +   +H+GGHK+
Sbjct: 202 AFVFICSHTTRDKRCGITAPYLKKVFDSKLQEHGLYRDNSDYRAEGVKIAFVNHVGGHKF 261

Query: 241 AGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGE 280
           A N+ +Y  +    I   W G VTP  VP+I++  I   E
Sbjct: 262 AANVQIYLRNPNTLI---WLGRVTPTIVPSIVEHLIVPEE 298

Required for normal localization of actin patches. Involved in tolerance to sodium ions and hydrogen peroxide.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6FLQ5|AIM32_CANGA Altered inheritance of mitochondria protein 32 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=AIM32 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 116/260 (44%), Gaps = 56/260 (21%)

Query: 80  LAGTVNPYGRHVFLC-------FKGP----EMWVARVEASDTDTLPKLLASALK----TR 124
           L   V  Y +HV L         K P     +W +R+E  +  T P  + S L       
Sbjct: 59  LKTAVPSYDKHVMLISDINRGMAKKPGVWKNIWESRIE--NNTTHPYDIISKLNFGPGVL 116

Query: 125 KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDV------------- 171
            + +++ S +           D L+ P+M +Y  +K+ D++ F   +             
Sbjct: 117 FNAISITSSLESFAPTSLEFYDFLVMPDM-RYYRVKKPDIEKFSQYINSGHAVAPKLSFS 175

Query: 172 -LVNGKPWASGV----------------QEGLTGSYVFVCSHGSRDKRCGVCGPALIEKF 214
             ++GK  A+ V                +E    +++FVC H  RD RCG+ GP ++   
Sbjct: 176 DYLSGKAAATTVSNNNQITLSLDDSIYYRELKNDAWLFVCGHEKRDMRCGIMGPEILHSV 235

Query: 215 NAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSP----DSEGKIMGHWYGYVTPDDVPA 270
           N   +S+ L +   +   SHIGGHK+AGN+++Y P    +   K+   W+G VTP +V  
Sbjct: 236 NTA-NSKPLVNNTGI--ISHIGGHKFAGNILIYKPIENQNGRKKVDSLWFGKVTPFNVSE 292

Query: 271 ILDQHIAKGEIIERLWRGQL 290
           I+ Q + +G IIE  +RG L
Sbjct: 293 IV-QSVNEGVIIENNFRGGL 311

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|C4Y1G7|AIM32_CLAL4 Altered inheritance of mitochondria protein 32 OS=Clavispora lusitaniae (strain ATCC 42720) GN=AIM32 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 34/206 (16%)

Query: 111 DTLPKLLASALKTRKDDM------TVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV 164
           + +P  LAS  +  +  M         S   V G   GT   V I+P+ I+ E  K +++
Sbjct: 73  NLVPGSLASEFEVLRRKMLSPQHPVTLSNAIVSGIDGGTHQKVFIYPDCIQVE-FKLANL 131

Query: 165 DSFVDDVLVNGK-------PWASG-------------VQE-GLTGSYVFVCSHGSRDKRC 203
             F+   L+  +       P+AS               QE  +    V +C H  RD RC
Sbjct: 132 PEFIQHYLLPVQETESVFNPFASANATPHTKVERPHLFQETPIHKDLVLICGHTQRDIRC 191

Query: 204 GVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYV 263
           G   P L+++F   +    L   + +   SHIGGH YAGN+I +S          WYG V
Sbjct: 192 GRIAPLLLQEFERVLAHEKLDVDVGL--VSHIGGHAYAGNVIYFSKHQPPV----WYGRV 245

Query: 264 TPDDVPAILDQHIAKGEIIERLWRGQ 289
            P+ V  I+ + I +G II+ L+RGQ
Sbjct: 246 FPEQVQGIVRETIVEGRIIKELYRGQ 271

Clavispora lusitaniae (strain ATCC 42720) (taxid: 306902)

>sp|C5DDQ4|AIM32_LACTC Altered inheritance of mitochondria protein 32 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=AIM32 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 15/119 (12%)

Query: 179 ASGVQEGLTGSY----VFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSH 234
           A+G+++    SY    V VC H  RD+RCG   P LI++F A+++     + + +   SH
Sbjct: 214 AAGMKQFAAQSYQNNLVLVCGHHQRDERCGQIAPRLIKEFEAKVE-----EDLDLAIVSH 268

Query: 235 IGGHKYAGNLIVY-----SPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRG 288
           IGGHK+AGN+I Y       D +  +   W+G + P  VP +L+ H+ + EII   +RG
Sbjct: 269 IGGHKFAGNVIFYKFLGFEADGKATVDSLWFGKILPSAVPTLLE-HLGRNEIITPWFRG 326

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

>sp|C5DZI5|AIM32_ZYGRC Altered inheritance of mitochondria protein 32 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=AIM32 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 11/105 (10%)

Query: 190 YVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYS- 248
           ++ VC H  RD+RCG+ G  LI     EI ++GL     V   SH+GGHK+AGNLI+Y+ 
Sbjct: 222 WILVCGHNQRDRRCGILGKELIN----EISAKGLDKDKNVALISHVGGHKFAGNLILYNY 277

Query: 249 -----PDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRG 288
                   E ++   W+  V P ++  +L +H+   +I +  +RG
Sbjct: 278 VGTNEKTGENQLDSLWFSRVLPPNLGTLL-EHVDAKKIPQEYYRG 321

Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307)

>sp|Q6CXH7|AIM32_KLULA Altered inheritance of mitochondria protein 32 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=AIM32 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 56/262 (21%)

Query: 80  LAGTVNPYGRHVFLCFKGPE---MWVARVEASD--TDTLPKLLASALKTRKDD--MTVKS 132
           L   V  Y +HV +  K P+    W +++E +     ++   L S+LK  +D   + V  
Sbjct: 68  LPNKVPEYHKHVLMLSKDPKGWKNWPSKLEMAHEYPHSMVGTLKSSLKDTRDGSGVLVNE 127

Query: 133 LMTVCGGGEGTDGDVLIFPEMIKYEGLKE--SDVDSFVDD-------------------- 170
           L         T    L+ P+M  YE  ++  SD   F+ D                    
Sbjct: 128 LALDGYTSSETHLKFLVIPDMKVYEVHRDRVSDFALFLGDGKQDSRKKLSFNDFLKGSDA 187

Query: 171 ----------VLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDS 220
                      + N  P  +   E        VC H  RD RCG   P LI K N+    
Sbjct: 188 VGQTAIHSSGSVANSIP--NFQSEPFHSDIAMVCGHYLRDARCGELAPLLIAKLNS---- 241

Query: 221 RGLKDQIFVKPCSHIGGHKYAGNLIVY--------SPDSEGKIMGHWYGYVTPDDVPAIL 272
             +K  +     SH GGHK+AGNLI Y        + +  GKI G W   + P ++  + 
Sbjct: 242 --IKPNLKTGIVSHFGGHKFAGNLIYYQFNGLKIHNDNETGKIDGLWLSKLLPQNLEFVF 299

Query: 273 DQHIAKGEIIERLWRGQLGQSA 294
            +H+ K  I++  +RG +  +A
Sbjct: 300 -RHLDKDIILQDFYRGHMSTAA 320

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|D3XDD3|AIM32_SACKU Altered inheritance of mitochondria protein 32 OS=Saccharomyces kudriavzevii GN=AIM32 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 9/107 (8%)

Query: 186 LTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLI 245
           L   +  VC H  RD +CG  GP +I  F    D + L D   +   SH+GGH +AGN+I
Sbjct: 205 LLRDWSLVCGHYKRDAKCGEMGPDIIAAFQ---DEKLLTDNN-LGLISHVGGHVFAGNVI 260

Query: 246 VY----SPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRG 288
            Y    + ++  K+   W+G V P ++  +L +++  G+II+ ++RG
Sbjct: 261 FYKLFKAENALNKLDSLWFGKVYPHNL-KLLCENLENGKIIDEMYRG 306

Saccharomyces kudriavzevii (taxid: 114524)

>sp|Q5XQP3|AIM32_SACK1 Altered inheritance of mitochondria protein 32 OS=Saccharomyces kudriavzevii (strain ATCC MYA-4449 / AS 2.2408 / CBS 8840 / NBRC 1802 / NCYC 2889) GN=AIM32 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 9/103 (8%)

Query: 190 YVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVY-- 247
           +  VC H  RD +CG  GP +I  F    D + L D   +   SH+GGH +AGN+I Y  
Sbjct: 209 WSLVCGHYKRDAKCGEMGPDIIAAFQ---DEKLLTDNN-LGLISHVGGHVFAGNVIFYKL 264

Query: 248 --SPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRG 288
             + ++  K+   W+G V P ++  +L +++  G+II+ ++RG
Sbjct: 265 FKAENALNKLDSLWFGKVYPHNL-KLLCENLENGKIIDEMYRG 306

Saccharomyces kudriavzevii (taxid: 114524)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
224055571	356	predicted protein [Populus trichocarpa]	0.857	0.963	0.672	1e-129
255560918	361	conserved hypothetical protein [Ricinus	0.852	0.944	0.676	1e-125
225452328	399	PREDICTED: altered inheritance of mitoch	0.987	0.989	0.586	1e-118
296087603	330	unnamed protein product [Vitis vinifera]	0.815	0.987	0.654	1e-111
449522640	363	PREDICTED: altered inheritance of mitoch	0.865	0.953	0.582	1e-110
449450070	363	PREDICTED: altered inheritance of mitoch	0.865	0.953	0.580	1e-110
297818354	339	AT3g27570/MMJ24_12 [Arabidopsis lyrata s	0.822	0.970	0.571	1e-108
15237439	333	Sucrase/ferredoxin-like family protein [	0.812	0.975	0.519	1e-105
21553503	333	sucrose cleavage protein-like [Arabidops	0.812	0.975	0.519	1e-105
30688845	379	Sucrase/ferredoxin-like protein [Arabido	0.857	0.905	0.565	1e-103

>gi|224055571|ref|XP_002298545.1| predicted protein [Populus trichocarpa] gi|222845803|gb|EEE83350.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/357 (67%), Positives = 285/357 (79%), Gaps = 14/357 (3%)

Query: 54  TNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTL 113
           T N+ST + ED A YGFTR EMYK  LAGTV PY RHVFLCFK P+ W+  VE  D   L
Sbjct: 4   TENVSTTATEDAANYGFTRSEMYKSNLAGTVGPYDRHVFLCFKNPDAWLPHVEEDD---L 60

Query: 114 PKLLASALKTRKDDMTVKSLMTVCGGGEGT---DGDVLIFPEMIKYEGLKESDVDSFVDD 170
           PKL+A+ALKTRK+D+TVK+ +T+C GGEG+   +GDVLIFP+MIKY+ LK+SDVD FVDD
Sbjct: 61  PKLVATALKTRKNDITVKTKVTICEGGEGSEFENGDVLIFPDMIKYKDLKDSDVDGFVDD 120

Query: 171 VLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVK 230
           VLV+GKPWASGVQE LTGS+VFVC+HGSRDKRCGVCGP LIEK    I+SRGL D++FV 
Sbjct: 121 VLVSGKPWASGVQEVLTGSHVFVCAHGSRDKRCGVCGPVLIEKLKEGIESRGLNDKVFVS 180

Query: 231 PCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQL 290
            CSH+GGHKYAGNLI+YSP+SEGK MGHWYGYVTP+DVP ILDQHI KG +IER+WRGQ+
Sbjct: 181 ACSHVGGHKYAGNLIIYSPNSEGKTMGHWYGYVTPEDVPEILDQHIEKGIVIERIWRGQM 240

Query: 291 GQSAEV-EKVDEKKLPNGKEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDV 349
           G S E  EKV E+KL NGK+++KSKK E+ + +  K+NV   CCQGA+GFSCC+D SS++
Sbjct: 241 GLSTEEGEKVGEQKLRNGKDKTKSKKPEENSAEAAKDNVA-SCCQGANGFSCCRDGSSEI 299

Query: 350 TGENK---QIETKGQG---RLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRSG 400
             E K    IE  G+G   +LS W+GS EQ DVL A AVVGAVATIAVAYS Y+RSG
Sbjct: 300 IKEKKLEENIEGHGKGGLDKLSRWIGSLEQGDVLAAGAVVGAVATIAVAYSFYKRSG 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560918|ref|XP_002521472.1| conserved hypothetical protein [Ricinus communis] gi|223539371|gb|EEF40962.1| conserved hypothetical protein [Ricinus communis]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/352 (67%), Positives = 279/352 (79%), Gaps = 11/352 (3%)

Query: 59  TISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLA 118
           + +AE+DAK+GFTR EMYK  LAGTV+ Y RHVFLCFK P+ W+ RVE S TD LPKL +
Sbjct: 11  SAAAEEDAKFGFTRPEMYKSNLAGTVDQYDRHVFLCFKNPDAWLPRVEESQTDPLPKLFS 70

Query: 119 SALKTRKDDMTVKSLMTVCGGGEGTD---GDVLIFPEMIKYEGLKESDVDSFVDDVLVNG 175
           SA+K RK+D+T+K+ +T+  GGEGTD   GDVLIFP+MIKY+ LKE+DVD FV+DVLVNG
Sbjct: 71  SAVKARKNDITIKTKVTISEGGEGTDFENGDVLIFPDMIKYKCLKETDVDGFVEDVLVNG 130

Query: 176 KPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHI 235
           KPWASGVQE LTGS+VFVC+HGSRDKRCGVCGP LIEK    I SRGL DQIFV  CSH+
Sbjct: 131 KPWASGVQEVLTGSHVFVCAHGSRDKRCGVCGPILIEKLKEGIQSRGLSDQIFVSACSHV 190

Query: 236 GGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLG-QSA 294
           GGHKYAGNLI+YSPDSEGK MGHWYGYVTPDDVP ILDQHI KG +IER+WRG++G    
Sbjct: 191 GGHKYAGNLIIYSPDSEGKTMGHWYGYVTPDDVPEILDQHIGKGVVIERIWRGKMGEVIE 250

Query: 295 EVEKVDEKKLPNGKEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGENK 354
           E EKV E+KLPNGK+  +SKK ++ +T V KENV GGCCQG++GFSCC+D +     E K
Sbjct: 251 EGEKVVEEKLPNGKDVKESKKHDESSTNVNKENV-GGCCQGSNGFSCCRDGNLGANEEKK 309

Query: 355 QIET------KGQGRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRSG 400
             E       K  G LSSW+ S EQ DVL A AV+GAVATIAVAYS+Y+RSG
Sbjct: 310 AKEIGEVRGKKRLGSLSSWISSLEQSDVLAAVAVIGAVATIAVAYSLYKRSG 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452328|ref|XP_002273410.1| PREDICTED: altered inheritance of mitochondria protein 32 [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/404 (58%), Positives = 293/404 (72%), Gaps = 9/404 (2%)

Query: 1   MRIGDPFRILITPAAAAAAARYHPLHQAKPLLILSHALHPTRTRTRILITRTDTNNMSTI 60
           MRIG     LI       A  Y      +P L    +  P +T    +    D  +  + 
Sbjct: 1   MRIGHRRGTLI-----FVAQHYFSFTSLQPRLHRFGSHFPLKTLVFSMAEAVDNPSSFSG 55

Query: 61  SAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASA 120
            +++D KYGF REEMYK  +AGTV+ Y RHVFLCFK PE W+ RVE SD+D LPKL +SA
Sbjct: 56  ESDEDFKYGFQREEMYKASIAGTVDAYDRHVFLCFKSPEDWLPRVEGSDSDLLPKLFSSA 115

Query: 121 LKTRKDDMTVKSLMTVCGGGEGT---DGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKP 177
           LK+RK+D+ VK+  T+C G +GT   DGDVLIFPEMIKY+ LK+SDVDSFVDDV+VNGKP
Sbjct: 116 LKSRKNDIAVKTKFTICEGRDGTEFSDGDVLIFPEMIKYKSLKDSDVDSFVDDVIVNGKP 175

Query: 178 WASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGG 237
           WASG+QE LTGS++FVC+HGSRDKRCGVCGP LI+K   EID RGL DQ+FV PCSH+GG
Sbjct: 176 WASGMQEVLTGSHIFVCAHGSRDKRCGVCGPVLIQKLKEEIDLRGLGDQVFVTPCSHVGG 235

Query: 238 HKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQSAEV- 296
           HKYAGNLI+YSP+ EGKIMGHWYGYVTP+DVP +LDQHI KGEIIER+WRGQ+G S E  
Sbjct: 236 HKYAGNLIIYSPNPEGKIMGHWYGYVTPNDVPELLDQHIGKGEIIERIWRGQMGSSTEEG 295

Query: 297 EKVDEKKLPNGKEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGENKQI 356
           EKVDE+KLPNGK++ + KK ++ +  +  +    GCCQGA G SCC+D +      +++ 
Sbjct: 296 EKVDEQKLPNGKDQKRKKKHQEDSPSLGNKESVAGCCQGADGVSCCRDATLVDKCTSEEQ 355

Query: 357 ETKGQGRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRSG 400
             K   +LS W+G++EQ DV    AVVGAVAT+AVAYS+YRRSG
Sbjct: 356 GKKVLTKLSHWMGTWEQGDVFATIAVVGAVATVAVAYSLYRRSG 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087603|emb|CBI34859.3| unnamed protein product [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/330 (65%), Positives = 263/330 (79%), Gaps = 4/330 (1%)

Query: 75  MYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLM 134
           MYK  +AGTV+ Y RHVFLCFK PE W+ RVE SD+D LPKL +SALK+RK+D+ VK+  
Sbjct: 1   MYKASIAGTVDAYDRHVFLCFKSPEDWLPRVEGSDSDLLPKLFSSALKSRKNDIAVKTKF 60

Query: 135 TVCGGGEGT---DGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYV 191
           T+C G +GT   DGDVLIFPEMIKY+ LK+SDVDSFVDDV+VNGKPWASG+QE LTGS++
Sbjct: 61  TICEGRDGTEFSDGDVLIFPEMIKYKSLKDSDVDSFVDDVIVNGKPWASGMQEVLTGSHI 120

Query: 192 FVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDS 251
           FVC+HGSRDKRCGVCGP LI+K   EID RGL DQ+FV PCSH+GGHKYAGNLI+YSP+ 
Sbjct: 121 FVCAHGSRDKRCGVCGPVLIQKLKEEIDLRGLGDQVFVTPCSHVGGHKYAGNLIIYSPNP 180

Query: 252 EGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQSAEV-EKVDEKKLPNGKEE 310
           EGKIMGHWYGYVTP+DVP +LDQHI KGEIIER+WRGQ+G S E  EKVDE+KLPNGK++
Sbjct: 181 EGKIMGHWYGYVTPNDVPELLDQHIGKGEIIERIWRGQMGSSTEEGEKVDEQKLPNGKDQ 240

Query: 311 SKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGENKQIETKGQGRLSSWLGS 370
            + KK ++ +  +  +    GCCQGA G SCC+D +      +++   K   +LS W+G+
Sbjct: 241 KRKKKHQEDSPSLGNKESVAGCCQGADGVSCCRDATLVDKCTSEEQGKKVLTKLSHWMGT 300

Query: 371 FEQRDVLTAAAVVGAVATIAVAYSIYRRSG 400
           +EQ DV    AVVGAVAT+AVAYS+YRRSG
Sbjct: 301 WEQGDVFATIAVVGAVATVAVAYSLYRRSG 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522640|ref|XP_004168334.1| PREDICTED: altered inheritance of mitochondria protein 32-like [Cucumis sativus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/362 (58%), Positives = 271/362 (74%), Gaps = 16/362 (4%)

Query: 54  TNNMSTIS-AEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDT 112
           ++N+ST+S   DD  YGF REEMY+  LAGTV  Y RHVFLC+K PE W + +E+SD+D 
Sbjct: 3   SDNLSTLSGTADDDTYGFHREEMYQSNLAGTVTAYDRHVFLCYKTPESWPSHLESSDSDL 62

Query: 113 LPKLLASALKTRKDDMTVKSLMTVCGGGEGTD---GDVLIFPEMIKYEGLKESDVDSFVD 169
           LPKLL++A+K RKDD+++K+ +T+  G + T    GDVLIFP+MIKY GLK+SDVD FVD
Sbjct: 63  LPKLLSAAIKARKDDISLKTKLTMFSGRDETGFSYGDVLIFPDMIKYSGLKDSDVDGFVD 122

Query: 170 DVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFV 229
           DVLVN KPWASGV E  T S+VFVC H SRD+RCGVCGP L++K + EI+ RGLKDQ++V
Sbjct: 123 DVLVNNKPWASGVPEVFTSSHVFVCVHASRDRRCGVCGPILVQKLDEEIELRGLKDQVYV 182

Query: 230 KPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQ 289
            PCSHIGGHKYAGNLI+Y P ++GK  GHWYGYVTP+D+P + +QHIAKGE++ERL RGQ
Sbjct: 183 SPCSHIGGHKYAGNLIIYQPGADGKTTGHWYGYVTPEDLPELFEQHIAKGEVVERLLRGQ 242

Query: 290 LGQSA-EVEKVDEKKLPNGKEESKSKKLE-DGNTQVTKENVTGGCCQGASGFSCCKD--- 344
           +G +  EV+K  E+KLPNG E++K  K+E   N   +K      CCQG++GF+CC+D   
Sbjct: 243 MGTNPEEVQKEGEQKLPNG-EDTKENKVEIQENGNQSKVEPVASCCQGSNGFTCCRDESS 301

Query: 345 -RSSDVTGENKQIETKGQ-----GRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRR 398
            +SS +  + K+I    Q      + S W G +EQ ++LTA AVVGAVAT+AVAYSIYRR
Sbjct: 302 GKSSSIEEKPKEISNDEQVPTIASKFSCWTGKWEQSEILTAVAVVGAVATVAVAYSIYRR 361

Query: 399 SG 400
           SG
Sbjct: 362 SG 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450070|ref|XP_004142787.1| PREDICTED: altered inheritance of mitochondria protein 32-like [Cucumis sativus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/362 (58%), Positives = 271/362 (74%), Gaps = 16/362 (4%)

Query: 54  TNNMSTIS-AEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDT 112
           ++N+ST+S   DD  YGF REEMY+  LAGTV  Y RHVFLC+K PE W + +E+SD+D 
Sbjct: 3   SDNLSTLSGTADDDTYGFHREEMYQSNLAGTVTAYDRHVFLCYKTPESWPSHLESSDSDL 62

Query: 113 LPKLLASALKTRKDDMTVKSLMTVCGGGEGTD---GDVLIFPEMIKYEGLKESDVDSFVD 169
           LPKLL++A+K RKDD+++K+ +T+  G + T    GDVLIFP+MIKY GLK+SDVD FVD
Sbjct: 63  LPKLLSAAIKARKDDISLKTKLTMFSGRDETGFSYGDVLIFPDMIKYSGLKDSDVDGFVD 122

Query: 170 DVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFV 229
           DVLVN KPWASGV E  T S+VFVC H SRD+RCGVCGP L++K + EI+ RGLKDQ++V
Sbjct: 123 DVLVNNKPWASGVPEVFTSSHVFVCVHASRDRRCGVCGPILVQKLDEEIELRGLKDQVYV 182

Query: 230 KPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQ 289
            PCSHIGGHKYAGNLI+Y P ++GK  GHWYGYVTP+D+P + +QHIAKG+++ERL RGQ
Sbjct: 183 SPCSHIGGHKYAGNLIIYQPGADGKTTGHWYGYVTPEDLPELFEQHIAKGKVVERLLRGQ 242

Query: 290 LGQSA-EVEKVDEKKLPNGKEESKSKKLE-DGNTQVTKENVTGGCCQGASGFSCCKD--- 344
           +G +  EV+K  E+KLPNG E++K  K+E   N   +K      CCQG++GF+CC+D   
Sbjct: 243 MGTNPEEVQKEGEQKLPNG-EDTKENKVEIQENGNQSKVEPVASCCQGSNGFTCCRDESS 301

Query: 345 -RSSDVTGENKQIETKGQ-----GRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRR 398
            +SS +  + K+I    Q      + S W G +EQ ++LTA AVVGAVAT+AVAYSIYRR
Sbjct: 302 GKSSSIEEKPKEISNDEQVPTIASKFSCWTGKWEQSEILTAVAVVGAVATVAVAYSIYRR 361

Query: 399 SG 400
           SG
Sbjct: 362 SG 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818354|ref|XP_002877060.1| AT3g27570/MMJ24_12 [Arabidopsis lyrata subsp. lyrata] gi|297322898|gb|EFH53319.1| AT3g27570/MMJ24_12 [Arabidopsis lyrata subsp. lyrata]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/348 (57%), Positives = 254/348 (72%), Gaps = 19/348 (5%)

Query: 56  NMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPK 115
           N++ +   +D  YGF R EMY   LAG+V PYGRHVFLC+K  E W+ RVE   T+ LP+
Sbjct: 8   NVNAVPVSEDELYGFKRPEMYSGTLAGSVGPYGRHVFLCYKSHETWLPRVE---TEGLPQ 64

Query: 116 LLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNG 175
             A + K RK D  V++ +TVCGGGE +DGDVLIFPEM++Y+ ++++DVD+FV+DVLV G
Sbjct: 65  RFAKSFKDRKADFGVETKLTVCGGGE-SDGDVLIFPEMVRYKAIQDTDVDAFVEDVLVKG 123

Query: 176 KPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHI 235
           KPW SGVQE L+GS+VFVC+HGSRDKRCGVCGP L+EKF  EI SRGL ++I V PCSHI
Sbjct: 124 KPWTSGVQEELSGSFVFVCAHGSRDKRCGVCGPVLMEKFQQEIGSRGLSEKIVVLPCSHI 183

Query: 236 GGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQL---GQ 292
           GGHKYAGNLIV+SPDS G + GHWYGYVTPDDVPA+LDQHIAKGEII+ L RG +    +
Sbjct: 184 GGHKYAGNLIVFSPDSAGNVSGHWYGYVTPDDVPAMLDQHIAKGEIIQNLSRGGMRLRPE 243

Query: 293 SAEVEKVDEKKLPNGKEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGE 352
             E EK DE K+PNG     +  + +    V ++  TGGCCQGA+G SCC++++ +   +
Sbjct: 244 GEEAEKEDEHKIPNG-----NSVVVEAREPVEQKGFTGGCCQGANGVSCCQEQTPEPVKK 298

Query: 353 NKQIETKGQGRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRSG 400
            + ++        +WL +  + +VL  AA V AVATIAVAYSIYRRSG
Sbjct: 299 EESMKL-------NWLRTIGKEEVLLGAAAVSAVATIAVAYSIYRRSG 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237439|ref|NP_198867.1| Sucrase/ferredoxin-like family protein [Arabidopsis thaliana] gi|17979496|gb|AAL50084.1| AT5g40510/MNF13_30 [Arabidopsis thaliana] gi|20147291|gb|AAM10359.1| AT5g40510/MNF13_30 [Arabidopsis thaliana] gi|332007173|gb|AED94556.1| Sucrase/ferredoxin-like family protein [Arabidopsis thaliana]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/354 (51%), Positives = 253/354 (71%), Gaps = 29/354 (8%)

Query: 53  DTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDT 112
           D  N++++ A +D +YGF R EMY   +A ++  Y RHVF+ +K PE W++ VE    + 
Sbjct: 3   DVENLNSVPASEDTEYGFKRPEMYSTNIANSITSYARHVFVLYKTPEAWLSHVEE---EG 59

Query: 113 LPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVL 172
           LP+  A+ LK RK D+ V++ + VC GG G+DGDVLIFP+MI+Y+G+K++DV+ F +DVL
Sbjct: 60  LPQRFATLLKDRKSDLLVQTKLNVCEGG-GSDGDVLIFPDMIRYKGVKDTDVEGFFEDVL 118

Query: 173 VNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPC 232
           VNGKPW+SG+QE ++G++VFVC+H SRDKRCGVCGP ++E+F  EI SRGL DQI +K C
Sbjct: 119 VNGKPWSSGIQEEISGTFVFVCTHASRDKRCGVCGPVILERFKQEIGSRGLSDQITLKRC 178

Query: 233 SHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLG- 291
           SH+G HKYAGNLI++ PDS GKI G+WYGYVTPDDVP +LDQHIAKGEII+R+WRGQ+G 
Sbjct: 179 SHVGQHKYAGNLIIFCPDSAGKITGNWYGYVTPDDVPELLDQHIAKGEIIQRIWRGQMGL 238

Query: 292 QSAEVEKVDEKK-LPNG----KEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRS 346
              E EKV E+K +PNG    KEESK                TGGCCQG++G SCC+D +
Sbjct: 239 PGGEAEKVHEQKVIPNGHGVVKEESK--------------GFTGGCCQGSNGVSCCQDET 284

Query: 347 SDVTGENKQIETKGQGRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRSG 400
                  K+++     + + W    ++ ++   AAVVGA+ATIA+A++ ++RSG
Sbjct: 285 PKPEPIKKEVK-----KCTIWFQPLDKEELYIGAAVVGAIATIAMAFTFFKRSG 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553503|gb|AAM62596.1| sucrose cleavage protein-like [Arabidopsis thaliana]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/354 (51%), Positives = 252/354 (71%), Gaps = 29/354 (8%)

Query: 53  DTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDT 112
           D  N++++ A +D +YGF R EMY   +A ++  Y RHVF+ +K PE W++ VE    + 
Sbjct: 3   DVENLNSVPASEDTEYGFKRPEMYSTNIANSITSYARHVFVLYKTPEAWLSHVEE---EG 59

Query: 113 LPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVL 172
           LP+  A+ LK RK D+ V++ + VC GG G+DGDVLIFP+MI+Y+G+K++DV+ F +DVL
Sbjct: 60  LPQRFATLLKDRKSDLLVQTKLNVCEGG-GSDGDVLIFPDMIRYKGVKDTDVEGFFEDVL 118

Query: 173 VNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPC 232
           VNGKPW+SG+QE ++G++VFVC+H SRDKRCGVCGP ++E+F  EI SRGL DQI +K C
Sbjct: 119 VNGKPWSSGIQEEISGTFVFVCTHASRDKRCGVCGPVILERFKQEIGSRGLSDQITLKRC 178

Query: 233 SHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLG- 291
           SH+G HKYAGNLI++ PDS GKI G+WYGYVTPDDVP +LDQHIAKGEII+R+WRGQ+G 
Sbjct: 179 SHVGQHKYAGNLIIFCPDSAGKITGNWYGYVTPDDVPELLDQHIAKGEIIQRIWRGQMGL 238

Query: 292 QSAEVEKVDEKK-LPNG----KEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRS 346
              E EKV E+K +PNG    KEESK                TGGCCQG++G SCC+D +
Sbjct: 239 PGGEAEKVHEQKVIPNGNGVVKEESK--------------GFTGGCCQGSNGVSCCQDET 284

Query: 347 SDVTGENKQIETKGQGRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRSG 400
                  K++      + + W    ++ ++   AAVVGA+ATIA+A++ ++RSG
Sbjct: 285 PKPEPIKKEVR-----KCTIWFQPLDKEELYIGAAVVGAIATIAMAFTFFKRSG 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688845|ref|NP_566821.2| Sucrase/ferredoxin-like protein [Arabidopsis thaliana] gi|332643817|gb|AEE77338.1| Sucrase/ferredoxin-like protein [Arabidopsis thaliana]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/361 (56%), Positives = 260/361 (72%), Gaps = 18/361 (4%)

Query: 43  TRTRILITRTDTNNMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWV 102
            R +  +      N++ +   +D  YGF R EMY   LAG+V PYGRHVFLC+K  E W+
Sbjct: 34  VRKKTSMAEEVAENVNAVPVSEDELYGFKRSEMYSGTLAGSVGPYGRHVFLCYKSHETWL 93

Query: 103 ARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKES 162
            RVE   T+ LP+  A   K RK D  V++ +TVCGGG  +DGDVLIFPEM++Y+ ++++
Sbjct: 94  PRVE---TEGLPQRFAKLFKDRKADFAVETKLTVCGGGGESDGDVLIFPEMVRYKAIQDT 150

Query: 163 DVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRG 222
           DVD+FV+DVLV GK W SG+QE LTGS+VFVC+HGSRDKRCGVCGP L+EKF  EI SRG
Sbjct: 151 DVDAFVEDVLVKGKTWTSGIQEELTGSFVFVCAHGSRDKRCGVCGPVLMEKFEQEISSRG 210

Query: 223 LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEII 282
           L D+IFV PCSHIGGHKYAGNLIV+SPDS G + GHWYGYVTPDDVPA+LDQHIAKGEII
Sbjct: 211 LSDKIFVLPCSHIGGHKYAGNLIVFSPDSAGNVSGHWYGYVTPDDVPAMLDQHIAKGEII 270

Query: 283 ERLWRGQL---GQSAEVEKVDEKKLPNGKEESKSKKLEDGNTQVTKENVTGGCCQGASGF 339
           + L RGQ+    +  E EK DE K+PNG     +  + +    V ++  TGGCCQGA+G 
Sbjct: 271 QNLSRGQMRLRPEGEEAEKEDEHKIPNG-----NSVMVEEREPVEQKGFTGGCCQGANGV 325

Query: 340 SCCKDRSSDVTGENKQIETKGQGRLSSWLGSFEQRDVLTAAAVVGAVATIAVAYSIYRRS 399
           SCC++++++       ++ +G  +L +WL S  + +VL  AAVV AVAT+AVAYSIYRRS
Sbjct: 326 SCCQEQAAE------PVKKEGCMKL-NWLKSMGKEEVLLGAAVVSAVATVAVAYSIYRRS 378

Query: 400 G 400
           G
Sbjct: 379 G 379

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
TAIR|locus:2091433	379	AT3G27570 "AT3G27570" [Arabido	0.825	0.870	0.525	2e-95
TAIR|locus:2168733	333	AT5G40510 "AT5G40510" [Arabido	0.815	0.978	0.463	4.7e-87
TAIR|locus:2133842	443	AT4G26620 "AT4G26620" [Arabido	0.74	0.668	0.449	2e-73
TAIR|locus:2178383	413	AT5G55900 "AT5G55900" [Arabido	0.727	0.704	0.447	6.8e-71
DICTYBASE|DDB_G0270420	321	DDB_G0270420 "sucraseferredoxi	0.562	0.700	0.358	9.5e-34
CGD|CAL0000907	330	orf19.612 [Candida albicans (t	0.272	0.330	0.376	6e-16
UNIPROTKB|Q59X65	330	CaO19.612 "Putative uncharacte	0.272	0.330	0.376	6e-16
CGD|CAL0003160	308	orf19.158 [Candida albicans (t	0.23	0.298	0.388	1.2e-10
UNIPROTKB|Q59JR9	308	APD1 "Potential actin patch lo	0.23	0.298	0.388	1.2e-10
SGD|S000000355	316	APD1 "Protein of unknown funct	0.222	0.281	0.36	8.4e-10

TAIR|locus:2091433 AT3G27570 "AT3G27570" [Arabidopsis thaliana (taxid:3702)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 183/348 (52%), Positives = 232/348 (66%)

Query:    56 NMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPK 115
             N++ +   +D  YGF R EMY   LAG+V PYGRHVFLC+K  E W+ RVE   T+ LP+
Sbjct:    47 NVNAVPVSEDELYGFKRSEMYSGTLAGSVGPYGRHVFLCYKSHETWLPRVE---TEGLPQ 103

Query:   116 LLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKEXXXXXXXXXXXXNG 175
               A   K RK D  V++ +TVCGGG  +DGDVLIFPEM++Y+ +++             G
Sbjct:   104 RFAKLFKDRKADFAVETKLTVCGGGGESDGDVLIFPEMVRYKAIQDTDVDAFVEDVLVKG 163

Query:   176 KPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHI 235
             K W SG+QE LTGS+VFVC+HGSRDKRCGVCGP L+EKF  EI SRGL D+IFV PCSHI
Sbjct:   164 KTWTSGIQEELTGSFVFVCAHGSRDKRCGVCGPVLMEKFEQEISSRGLSDKIFVLPCSHI 223

Query:   236 GGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLG---Q 292
             GGHKYAGNLIV+SPDS G + GHWYGYVTPDDVPA+LDQHIAKGEII+ L RGQ+    +
Sbjct:   224 GGHKYAGNLIVFSPDSAGNVSGHWYGYVTPDDVPAMLDQHIAKGEIIQNLSRGQMRLRPE 283

Query:   293 SAEVEKVDEKKLPNGKEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGE 352
               E EK DE K+PNG     S  +E+    V ++  TGGCCQGA+G SCC++++++    
Sbjct:   284 GEEAEKEDEHKIPNGN----SVMVEE-REPVEQKGFTGGCCQGANGVSCCQEQAAE---- 334

Query:   353 NKQIETKGQGRLSSWLGSFEQRDXXXXXXXXXXXXXXXXXYSIYRRSG 400
                ++ +G  +L+ WL S  + +                 YSIYRRSG
Sbjct:   335 --PVKKEGCMKLN-WLKSMGKEEVLLGAAVVSAVATVAVAYSIYRRSG 379

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2168733 AT5G40510 "AT5G40510" [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 161/347 (46%), Positives = 226/347 (65%)

Query:    56 NMSTISAEDDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPK 115
             N++++ A +D +YGF R EMY   +A ++  Y RHVF+ +K PE W++ VE    + LP+
Sbjct:     6 NLNSVPASEDTEYGFKRPEMYSTNIANSITSYARHVFVLYKTPEAWLSHVEE---EGLPQ 62

Query:   116 LLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKEXXXXXXXXXXXXNG 175
               A+ LK RK D+ V++ + VC GG G+DGDVLIFP+MI+Y+G+K+            NG
Sbjct:    63 RFATLLKDRKSDLLVQTKLNVCEGG-GSDGDVLIFPDMIRYKGVKDTDVEGFFEDVLVNG 121

Query:   176 KPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHI 235
             KPW+SG+QE ++G++VFVC+H SRDKRCGVCGP ++E+F  EI SRGL DQI +K CSH+
Sbjct:   122 KPWSSGIQEEISGTFVFVCTHASRDKRCGVCGPVILERFKQEIGSRGLSDQITLKRCSHV 181

Query:   236 GGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLG-QSA 294
             G HKYAGNLI++ PDS GKI G+WYGYVTPDDVP +LDQHIAKGEII+R+WRGQ+G    
Sbjct:   182 GQHKYAGNLIIFCPDSAGKITGNWYGYVTPDDVPELLDQHIAKGEIIQRIWRGQMGLPGG 241

Query:   295 EVEKVDEKK-LPNGKEESKSKKLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGEN 353
             E EKV E+K +PNG           G  +   +  TGGCCQG++G SCC+D +       
Sbjct:   242 EAEKVHEQKVIPNGH----------GVVKEESKGFTGGCCQGSNGVSCCQDETPKPEPIK 291

Query:   354 KQIETKGQGRLSSWLGSFEQRDXXXXXXXXXXXXXXXXXYSIYRRSG 400
             K+++     + + W    ++ +                 ++ ++RSG
Sbjct:   292 KEVK-----KCTIWFQPLDKEELYIGAAVVGAIATIAMAFTFFKRSG 333

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2133842 AT4G26620 "AT4G26620" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
 Identities = 142/316 (44%), Positives = 200/316 (63%)

Query:    64 DDAKYGFTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKT 123
             +DA +GF R +   E+LAGTV  Y RHVFLC+K P +W AR+EA++ D LP+LL++A+  
Sbjct:    59 NDADFGFARPDFRSEQLAGTVQFYERHVFLCYKKPSVWPARIEAAEFDRLPRLLSAAVSA 118

Query:   124 RKDDMTVKSLMTVCGGGEGTD---GDVLIFPEMIKYEGLKEXXXXXXXXXXXXNGKPWAS 180
             RK  M  ++ +T+C G +GT+   GDVLIFP+MI+Y  L                  W  
Sbjct:   119 RKGSMKKETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVETFVEEVLVKDGEWLP 178

Query:   181 GVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKY 240
             G  E L GSYVFVCSHGSRD+RCGVCGP+L+ +F  E++  GL+ ++ + PCSHIGGHKY
Sbjct:   179 GNPELLKGSYVFVCSHGSRDRRCGVCGPSLVSRFREELEFHGLQGKVSISPCSHIGGHKY 238

Query:   241 AGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQSAEVEK-V 299
             AGN+I+Y  +   ++ GHWYGYVTP+DVP +L+QHI KGEI++RLWRG++G S E +K  
Sbjct:   239 AGNVIIYRSNINREVTGHWYGYVTPEDVPILLEQHINKGEIVDRLWRGEMGLSEEDQKKT 298

Query:   300 DEKKLP-NGKEES---KSKKLEDG---NTQVT----KENVTGGCCQ-GASGFSCCKDRSS 347
              E +   NG   S     K  ++    N  V+    +     GCCQ   +  SCC+D ++
Sbjct:   299 QEGRFQLNGTVHSVKINGKVSQESSVHNADVSCCQSRAAEPNGCCQQNGNSSSCCQDDTT 358

Query:   348 DV----TGENKQIETK 359
              +    T E+ Q+E++
Sbjct:   359 LMLSLGTSEDNQLESE 374

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0010048 "vernalization response" evidence=RCA

TAIR|locus:2178383 AT5G55900 "AT5G55900" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
 Identities = 137/306 (44%), Positives = 191/306 (62%)

Query:    70 FTREEMYKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMT 129
             F+  +   +KLAGTV  Y RHVFLC+K P +W AR+EAS+ D LP+LL+S +  RK  M 
Sbjct:    53 FSDVDFALDKLAGTVQFYERHVFLCYKKPSVWPARIEASEFDRLPRLLSSVISARKSSMK 112

Query:   130 VKSLMTVCGGGEGTD---GDVLIFPEMIKYEGLKEXXXXXXXXXXXXNGKPWASGVQEGL 186
              ++L+T+C G +G++   GDVLIFP+MI+Y  L               G  W  G  E L
Sbjct:   113 KETLLTICEGHDGSETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKGVEWLPGNPESL 172

Query:   187 TGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIV 246
             + SYVFVC HGSRD+RCGVCGP+L+ +F  EIDS GL+ ++ V PCSHIGGHKY G++I+
Sbjct:   173 SSSYVFVCCHGSRDRRCGVCGPSLVSRFREEIDSCGLRGEVSVSPCSHIGGHKYTGDVII 232

Query:   247 YSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQSAEVEKVDEKKLPN 306
             Y  +   ++ GHWYG VT +DVP +L+QHI KGEI++RLWRG++G   E    D+KK   
Sbjct:   233 YGLNINQRVTGHWYGCVTLEDVPLLLEQHINKGEIVDRLWRGEMGLPEE----DQKKTQE 288

Query:   307 GKEESKSKKLEDGNTQVTKENVTGG-CCQGAS-----GFSCCKDRSSDVTGENKQIETKG 360
              + +  S+K+   N +VT+E+V    CCQ  +     G  C ++ +S    E    E   
Sbjct:   289 QRLQLNSEKIS--NREVTQESVNNSICCQSRAVPELNGSGCQQNGNSSYCLEEIHTEKNT 346

Query:   361 QGRLSS 366
               R++S
Sbjct:   347 SERVTS 352

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0270420 DDB_G0270420 "sucraseferredoxin-like family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 89/248 (35%), Positives = 135/248 (54%)

Query:    66 AKYGFTREEMY---KEKLAGTVNPYGRHVFLCFKGP-EMWVARVEASDTDTLPKLLASAL 121
             AK GF R EM    +E    +++ Y RH F+C   P E W A++ ++ T  L       +
Sbjct:    85 AKCGFCRPEMVDSNRETPNNSISTYHRHYFICTGIPSEEWPAKLYSA-TPLLESF-QQVM 142

Query:   122 KTRKDDMTVKSLMTVCGGGE-GTDG-DVLIFPEMIKYEGLKEXXXXXXXXXXXXNG---- 175
             K  +++     ++          D  DV+IFPEM+K  GL              N     
Sbjct:   143 KKYENNPRKNQIINATDIQPLNKDSLDVIIFPEMVKLVGLTPNTMEKVLTYFQDNDTIDL 202

Query:   176 KPWASGVQ-EGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSH 234
               +   +Q E L+G Y+F+C+H  +D+RCG CGP L+++   +I  R L+ +I V   SH
Sbjct:   203 STFPMEIQVEQLSGKYIFICTHKQKDQRCGYCGPILVDQLRDQIKERSLEKEIQVFGTSH 262

Query:   235 IGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQSA 294
             +GGHKYAGN++V+ P       G+WYGYVTPDDV +I+D  I+ GE+I++L RG +G   
Sbjct:   263 VGGHKYAGNVLVFPP-------GNWYGYVTPDDVSSIIDSTIS-GEVIQKLHRGTMG--T 312

Query:   295 EVEKVDEK 302
             E+ K ++K
Sbjct:   313 EIPKKEKK 320

GO:0044351 "macropinocytosis" evidence=RCA

CGD|CAL0000907 orf19.612 [Candida albicans (taxid:5476)]

 Score = 216 (81.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 41/109 (37%), Positives = 60/109 (55%)

Query:   182 VQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYA 241
             +++ L    + +C H  RD RCG+  P L  +FN  +    L+D I+    SH+GGH YA
Sbjct:   219 IEDELDKDLLVICGHAKRDLRCGIIAPQLESEFNQVLVRHNLQDTIYTGQVSHVGGHAYA 278

Query:   242 GNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQL 290
             GN++ Y  D +      WYG V P DV  I++  I   EII+ L+RG +
Sbjct:   279 GNVLYYPKDCQTSKDFIWYGRVFPKDVQGIVESTIINKEIIKDLFRGDI 327

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59X65 CaO19.612 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 216 (81.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 41/109 (37%), Positives = 60/109 (55%)

Query:   182 VQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYA 241
             +++ L    + +C H  RD RCG+  P L  +FN  +    L+D I+    SH+GGH YA
Sbjct:   219 IEDELDKDLLVICGHAKRDLRCGIIAPQLESEFNQVLVRHNLQDTIYTGQVSHVGGHAYA 278

Query:   242 GNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQL 290
             GN++ Y  D +      WYG V P DV  I++  I   EII+ L+RG +
Sbjct:   279 GNVLYYPKDCQTSKDFIWYGRVFPKDVQGIVESTIINKEIIKDLFRGDI 327

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0003160 orf19.158 [Candida albicans (taxid:5476)]

 Score = 166 (63.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query:   182 VQEGLTGSYVFVCSHGSRDKRCGVCGPAL---IEKFNAEIDS-RGLKDQ----IFVKPCS 233
             +   L  S+VF CSH +RDKRCG+  P +   I+ +  E+D  R   D     I  +  +
Sbjct:   187 ISPNLNQSFVFFCSHTTRDKRCGITAPIMKREIDNYLQELDLIRNFGDYRPNGIQTEFIN 246

Query:   234 HIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHI 276
             HIGGHKYA N+I+Y   S GK +  W G   P+++  I+D+ I
Sbjct:   247 HIGGHKYAANVIIYLKKS-GKNI--WLGLCKPNNIKPIVDECI 286

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59JR9 APD1 "Potential actin patch localization protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 166 (63.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query:   182 VQEGLTGSYVFVCSHGSRDKRCGVCGPAL---IEKFNAEIDS-RGLKDQ----IFVKPCS 233
             +   L  S+VF CSH +RDKRCG+  P +   I+ +  E+D  R   D     I  +  +
Sbjct:   187 ISPNLNQSFVFFCSHTTRDKRCGITAPIMKREIDNYLQELDLIRNFGDYRPNGIQTEFIN 246

Query:   234 HIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHI 276
             HIGGHKYA N+I+Y   S GK +  W G   P+++  I+D+ I
Sbjct:   247 HIGGHKYAANVIIYLKKS-GKNI--WLGLCKPNNIKPIVDECI 286

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000000355 APD1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 165 (63.1 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query:   189 SYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGL-KDQ-------IFVKPCSHIGGHKY 240
             ++VF+CSH +RDKRCG+  P L + F++++   GL +D        + +   +H+GGHK+
Sbjct:   202 AFVFICSHTTRDKRCGITAPYLKKVFDSKLQEHGLYRDNSDYRAEGVKIAFVNHVGGHKF 261

Query:   241 AGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGE 280
             A N+ +Y  +    I   W G VTP  VP+I++  I   E
Sbjct:   262 AANVQIYLRNPNTLI---WLGRVTPTIVPSIVEHLIVPEE 298

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	400
pfam06999	218	pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like	8e-72
cd03062	97	cd03062, TRX_Fd_Sucrase, TRX-like [2Fe-2S] Ferredo	9e-41
cd02980	77	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2F	2e-18
COG3411	64	COG3411, COG3411, Ferredoxin [Energy production an	2e-07
COG4759	316	COG4759, COG4759, Uncharacterized protein conserve	2e-06

>gnl|CDD|219260 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like

 Score =  224 bits (572), Expect = 8e-72
 Identities = 80/226 (35%), Positives = 113/226 (50%), Gaps = 24/226 (10%)

Query: 79  KLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCG 138
            L GT   Y RH+ +    P  W           + + L++ L  RK  + V++ +T+  
Sbjct: 1   PLIGTAKTYDRHLLVET-SPGPWPHEACDEKD--VLQGLSALLAARKKALGVRTPLTIAP 57

Query: 139 GGE----GTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKP-----------WASGVQ 183
           G E    G+ GDVLI P+ I  +   E     FV+D+L    P              G  
Sbjct: 58  GREAVSYGSKGDVLILPDFIPIKLFAEFLKQEFVEDLLDLDLPALGPGKLLAFDDLEGGA 117

Query: 184 EGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGN 243
           E +    + VC+HG RDKRCG+ GP L ++F AE+   GL     V  CSHIGGHK+A N
Sbjct: 118 EDIHDRIILVCTHGKRDKRCGITGPPLYKEFRAELADLGLYRDR-VWECSHIGGHKFAPN 176

Query: 244 LIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQ 289
           +I++         G WYG VTP+ VPAI+D  I  G+I++ L+RG 
Sbjct: 177 VIIFK----KTPTGIWYGRVTPEHVPAIVD-EIGDGKILKELYRGW 217

This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity. Length = 218

>gnl|CDD|239360 cd03062, TRX_Fd_Sucrase, TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity

 Score =  139 bits (352), Expect = 9e-41
 Identities = 48/102 (47%), Positives = 61/102 (59%), Gaps = 6/102 (5%)

Query: 188 GSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVY 247
              V VC+HG RDKRCG+CGP L  +  AE+   G    + V   SH+GGHK+AGN+I+Y
Sbjct: 1   DPLVLVCTHGKRDKRCGICGPPLAAELRAELPEHGP-GGVRVWEVSHVGGHKFAGNVIIY 59

Query: 248 SPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQ 289
                    G WYG VTP+ VP I+D+ I  G+II  L RG 
Sbjct: 60  PKGD-----GIWYGRVTPEHVPPIVDRLILGGKIIPELRRGG 96

The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd. Length = 97

>gnl|CDD|239278 cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

 Score = 78.8 bits (195), Expect = 2e-18
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 12/87 (13%)

Query: 190 YVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYS 248
           ++ VC+       CG+ G   L+E    E+  RG   ++ V+    +G    A  ++VY 
Sbjct: 2   HILVCTGT----ACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYP 57

Query: 249 PDSEGKIMGHWYGYVTPDDVPAILDQH 275
                   G WYG VTP+DV  I+++ 
Sbjct: 58  D-------GVWYGRVTPEDVEEIVEEL 77

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers. Length = 77

>gnl|CDD|225945 COG3411, COG3411, Ferredoxin [Energy production and conversion]

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 242 GNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERL 285
           G ++V  P+      G WY  V P+D   I+  H+  G  +E L
Sbjct: 17  GPVLVVYPE------GVWYTRVDPEDARRIVQSHLLGGRPVEEL 54

Length = 64

>gnl|CDD|227101 COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 148 LIFPEMIKYEGL-KESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVC 206
            +F    K E L  ++++   +  +L+ GK  A           + VC+HG+ D  C   
Sbjct: 90  KLFAGYSKQEFLVPDAELGVLILALLLQGKELAQFDIYPQHTRDILVCTHGNVDVCCARF 149

Query: 207 GPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLI 245
           G    ++  A+     L + + V   SH GGH++A  LI
Sbjct: 150 GYPFYQQLRAQYADLNL-ENLRVWQSSHFGGHRFAPTLI 187

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	400
PF06999	230	Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: I	100.0
COG4759	316	Uncharacterized protein conserved in bacteria cont	100.0
cd03062	97	TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) f	99.92
cd03063	92	TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd)	99.55
cd02980	77	TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferr	99.54
COG3411	64	Ferredoxin [Energy production and conversion]	99.39
cd03064	80	TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) fami	99.34
cd03062	97	TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) f	99.18
cd03083	80	TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd)	99.14
cd03081	80	TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin	99.08
PRK07539	154	NADH dehydrogenase subunit E; Validated	99.03
PF01257	145	2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredo	99.02
TIGR01958	148	nuoE_fam NADH-quinone oxidoreductase, E subunit. T	98.93
COG3411	64	Ferredoxin [Energy production and conversion]	98.92
cd02980	77	TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferr	98.69
cd03082	72	TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxi	98.64
PRK05988	156	formate dehydrogenase subunit gamma; Validated	98.41
PRK07571	169	bidirectional hydrogenase complex protein HoxE; Re	98.38
cd03064	80	TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) fami	98.33
COG1905	160	NuoE NADH:ubiquinone oxidoreductase 24 kD subunit	98.27
PRK12373	400	NADH dehydrogenase subunit E; Provisional	98.23
cd03063	92	TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd)	98.21
cd03081	80	TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin	97.93
PF01257	145	2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredo	97.81
KOG3196	233	consensus NADH:ubiquinone oxidoreductase, NDUFV2/2	97.77
PRK07539	154	NADH dehydrogenase subunit E; Validated	97.62
TIGR01958	148	nuoE_fam NADH-quinone oxidoreductase, E subunit. T	97.57
cd03083	80	TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd)	97.51
PF07845	116	DUF1636: Protein of unknown function (DUF1636); In	97.43
PF06999	230	Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: I	97.04
cd03082	72	TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxi	96.85
PRK05988	156	formate dehydrogenase subunit gamma; Validated	96.4
PRK07571	169	bidirectional hydrogenase complex protein HoxE; Re	96.2
COG5469	143	Predicted metal-binding protein [Function unknown]	96.02
COG1905	160	NuoE NADH:ubiquinone oxidoreductase 24 kD subunit	94.79
PRK12373	400	NADH dehydrogenase subunit E; Provisional	94.24
PF07845	116	DUF1636: Protein of unknown function (DUF1636); In	93.02

>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity []

Probab=100.00  E-value=5.8e-42  Score=324.97  Aligned_cols=206  Identities=42%  Similarity=0.740  Sum_probs=167.1

Q ss_pred             CCCCCcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCC----------CCCCeEE
Q 015770           79 KLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGE----------GTDGDVL  148 (400)
Q Consensus        79 ~L~GTa~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~c----------g~gp~VL  148 (400)
                      ||+||++.|.+||+|++ ++.+||++.++.. ..+++.|.+.++........+..+++..+..          .....++
T Consensus         1 pL~Gta~~~~~hvli~~-~~~~W~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   78 (230)
T PF06999_consen    1 PLIGTAPPYDRHVLIET-GPGDWPSDALDSK-SSLPQALSAALKARKKKLGVRFLLIRRPGRISNSSLPEPSRPKPGDVL   78 (230)
T ss_pred             CcCcccCcCcEEEEEEc-CCCCCCcchhcCC-cchHHHHHHHHHHhhcccCccccceecCCcccccccccccCCCCceEE
Confidence            79999999999999887 7899999765532 4688889989887665555555555554432          3356899


Q ss_pred             EecCcEEeccCCCcchhHHHHHHhhCCCC--------------CCCCCCCCCCCcEEEEccCCCCCCCcccccHHHHHHH
Q 015770          149 IFPEMIKYEGLKESDVDSFVDDVLVNGKP--------------WASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKF  214 (400)
Q Consensus       149 VfPd~iwY~~vt~~dVd~~Vee~L~~G~~--------------~l~g~~e~~~~~~IlVCth~~RD~rCg~~G~~l~~aL  214 (400)
                      |||++++|..++....+++++.++.....              +.+...+...+++||||+|++||+|||+.|++|+++|
T Consensus        79 v~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVCtHg~RD~rCg~~Gp~l~~~l  158 (230)
T PF06999_consen   79 VFPDFKIYRFVTRSNVQEFVEDLLDLDLPAVTALPRQSSAAPDKLPFPREPPDKPLILVCTHGKRDKRCGILGPPLAREL  158 (230)
T ss_pred             EEcccEEeccccchhhHHHHHHhccccccccccccCccccccccCCCCcccCCCCEEEEcCCCCcCCchhcccHHHHHHH
Confidence            99999999988888888887765544332              1112234467899999999999999999999999999


Q ss_pred             HHHHHhCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCCHHHHHHHHHHCCccccceeccCC
Q 015770          215 NAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQL  290 (400)
Q Consensus       215 ~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~dv~~Iv~~hl~~G~iv~~l~rG~~  290 (400)
                      ++++.+.+|...+ ||++||+|||+||||||+|..   .+.+|+|||+|+|++|+.||++++.+|+++.++|||+|
T Consensus       159 ~~~~~~~~l~~~~-V~~iSHiGGHkfAgNvIiy~~---~~p~g~wyGrv~p~~v~~iv~~t~~~g~vi~~~~RG~~  230 (230)
T PF06999_consen  159 EKELRERGLSRDR-VWEISHIGGHKFAGNVIIYSK---PKPDGIWYGRVTPEDVEGIVDATILDGKVIPELYRGRM  230 (230)
T ss_pred             HHHhhhcCCccce-EEEecccccceecCeEEEEec---CCCcEEEEEeeCHHHHHHHHHHHHhCCcCcCccCcCCC
Confidence            9999999997644 999999999999999999921   11269999999999999999998999999999999997

>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-35  Score=283.17  Aligned_cols=271  Identities=19%  Similarity=0.309  Sum_probs=209.7

Q ss_pred             cCCCCCCCcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCC--C-CeEEEe--
Q 015770           76 YKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGT--D-GDVLIF--  150 (400)
Q Consensus        76 ~~e~L~GTa~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~--g-p~VLVf--  150 (400)
                      ..|+++||+..++.  ||+.|.|+||+....+  +++++..|...++..-.... -..+.+-+.+...  + ..+++|  
T Consensus        13 ~~EDpIGTa~~~~~--ylliE~pqPW~~~~~~--s~~ip~~l~dl~~~~~~~~~-~~~l~i~~d~ey~~~g~tr~~~y~~   87 (316)
T COG4759          13 NGEDPIGTANTRDG--YLLIEAPQPWTENVLD--SKPIPQNLQDLLEELYKAGG-VIPLAIAPDREYSQPGYTRVLIYRR   87 (316)
T ss_pred             cCCCCCCcccccce--EEEEeCCCCccccccc--CCCCChhHHHHHHHHHhcCC-ceeEEEeeccccCCCCceEEEEEec
Confidence            36999999999997  8888999999997665  46777777766655422211 2344444443332  2 256666  


Q ss_pred             cCcEEecc-------CCCcchhHHHHHHhhCCCCCCCCCCCCCCCcEEEEccCCCCCCCcccccHHHHHHHHHHHHhCCC
Q 015770          151 PEMIKYEG-------LKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGL  223 (400)
Q Consensus       151 Pd~iwY~~-------vt~~dVd~~Vee~L~~G~~~l~g~~e~~~~~~IlVCth~~RD~rCg~~G~~l~~aL~~~l~~~gL  223 (400)
                      |.. .|..       +++.....++...+..|+....-.....+.+.|||||||++|+||++.|.++|+.++..++...+
T Consensus        88 ~~~-~fa~y~K~E~lv~d~~~~~l~l~l~~~~~~l~~~~~~~~h~RdiLVCTHgn~D~cCarfG~P~Y~~~r~~~a~l~~  166 (316)
T COG4759          88 PAK-LFAGYSKQEFLVPDAELGVLILALLLQGKELAQFDIYPQHTRDILVCTHGNVDVCCARFGYPFYQQLRAQYADLNL  166 (316)
T ss_pred             HHH-hhhhheeeEEecccchhhhhHHHHhcCCccchhhccchhhhceEEEecCCChhhhhhhcCcHHHHHHHHhhhhccc
Confidence            322 2222       22333344444444444432111122336679999999999999999999999999999999887


Q ss_pred             CCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCCHHHHHHHHHHCCccccceeccCCCCC-hHHHHHHhh
Q 015770          224 KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQS-AEVEKVDEK  302 (400)
Q Consensus       224 ~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~dv~~Iv~~hl~~G~iv~~l~rG~~~~~-~~q~~~~e~  302 (400)
                      . +++||++||+|||+||+.+|.+|       +|.+||+++++....||... .+-+-+..++|||.+|| .+|++|+|+
T Consensus       167 ~-~lRvWq~SHfgGHrFAPTlidlP-------~GqyyG~Ld~~~~~~l~~r~-gdvk~L~~~YRGWg~L~~~~QI~Erei  237 (316)
T COG4759         167 E-NLRVWQSSHFGGHRFAPTLIDLP-------QGQYYGHLDPESLDSLLTRT-GDVKQLKPFYRGWGGLPKFEQIAEREI  237 (316)
T ss_pred             c-ceEEEEecccCccccCchhhcCC-------CCceeeecCHHHHHHHHhcc-CchhhhhhhccCCcCCCHHHHHHHHHH
Confidence            6 59999999999999999999988       69999999999999999764 44455889999999999 999999999


Q ss_pred             hccCC----Ccccccc--ccccCCcceeccCcCcccccCCCCeeEecCCCCCcccccccccccCccccCc
Q 015770          303 KLPNG----KEESKSK--KLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGENKQIETKGQGRLSS  366 (400)
Q Consensus       303 r~~~G----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  366 (400)
                      ++++|    ||+++++  +|+.|++.+..++.   +.+++|+.++++.+++|++  .+....+++|+.+.
T Consensus       238 ~~~~GW~W~nY~~s~qvl~qd~d~~~~~v~i~---ft~pDg~i~~~~~~rVE~~--g~v~t~~~Sc~~~~  302 (316)
T COG4759         238 WMQHGWDWLNYKKSGQVLEQDEDENWAEVEID---FTSPDGDIWGYYLARVEVE--GSVMTVRSSCGDPQ  302 (316)
T ss_pred             HHHhchhhhccccceeEEeeccCCcceeEEEE---EEcCCCCeeeEEEEEEEec--CcEEEEEecCCCCC
Confidence            99999    9999998  88999999999998   9999999999999999998  67778888888743

>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity

Probab=99.92  E-value=2.9e-25  Score=185.28  Aligned_cols=97  Identities=49%  Similarity=0.979  Sum_probs=88.2

Q ss_pred             CcEEEEccCCCCCCCcccccHHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCC
Q 015770          188 GSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDD  267 (400)
Q Consensus       188 ~~~IlVCth~~RD~rCg~~G~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~d  267 (400)
                      .++||||+|++||.||+..|++|+++|++++.++|. ++|.|+.|||+|||+|++|||+||+.     +|+|||+|+|+|
T Consensus         1 ~~~ilVCth~rrd~~C~~~g~~l~~~l~~~l~~~~~-~~v~v~~~~clG~c~~gp~vvvyP~~-----~g~wy~~v~p~~   74 (97)
T cd03062           1 DPLVLVCTHGKRDKRCGICGPPLAAELRAELPEHGP-GGVRVWEVSHVGGHKFAGNVIIYPKG-----DGIWYGRVTPEH   74 (97)
T ss_pred             CCEEEEeCCCCCCcChhhcCHHHHHHHHHHHHHhCC-CceEEEeCCcCCccCcCCEEEEEeCC-----CeeEEeecCHHH
Confidence            369999999999999999999999999999999984 57999999999999999888876642     489999999999


Q ss_pred             HHHHHHHHHHCCccccceeccCC
Q 015770          268 VPAILDQHIAKGEIIERLWRGQL  290 (400)
Q Consensus       268 v~~Iv~~hl~~G~iv~~l~rG~~  290 (400)
                      +++||++|+.+|+++++++++.+
T Consensus        75 v~~Iv~~hl~~g~~v~~~~~~~~   97 (97)
T cd03062          75 VPPIVDRLILGGKIIPELRRGGI   97 (97)
T ss_pred             HHHHHHHHhcCCcCCcccccCCC
Confidence            99999999999999999988753

The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.

>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH

Probab=99.55  E-value=1.2e-14  Score=120.25  Aligned_cols=77  Identities=29%  Similarity=0.413  Sum_probs=69.7

Q ss_pred             EEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEc-CCCCCCccc-eEEeccCCC
Q 015770          190 YVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYS-PDSEGKIMG-HWYGYVTPD  266 (400)
Q Consensus       190 ~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~-p~~~~~~~g-~wYg~Vtp~  266 (400)
                      +|+||+++    +|-.+| .+++++|+++++++||  ++.|.+|||+ |+|+.||+|.+. |+      | +.|++|+|+
T Consensus         2 ~I~Vc~gT----~ciAaGA~~V~~al~~ei~~~gl--~v~v~~tGC~-G~C~~ePlV~V~~p~------g~v~Y~~V~~e   68 (92)
T cd03063           2 RIYVPRDA----AALALGADEVAEAIEAEAAARGL--AATIVRNGSR-GMYWLEPLVEVETPG------GRVAYGPVTPA   68 (92)
T ss_pred             EEEEeCCh----hhhhhCHHHHHHHHHHHHHHcCC--eEEEEEecCc-eecCCCCEEEEEeCC------CcEEEEeCCHH
Confidence            69999985    776676 7999999999999999  5999999999 899999999885 76      5 999999999


Q ss_pred             CHHHHHHHHHHCC
Q 015770          267 DVPAILDQHIAKG  279 (400)
Q Consensus       267 dv~~Iv~~hl~~G  279 (400)
                      |+++||++|+.++
T Consensus        69 dv~~Iv~~~~~~~   81 (92)
T cd03063          69 DVASLLDAGALEG   81 (92)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999998854

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c

>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

Probab=99.54  E-value=1.5e-14  Score=114.27  Aligned_cols=76  Identities=33%  Similarity=0.663  Sum_probs=68.1

Q ss_pred             cEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCC
Q 015770          189 SYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDD  267 (400)
Q Consensus       189 ~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~d  267 (400)
                      .+|+||++.    +|...| +.|+++|++++...++++.|.|..++|+ |.|..||+|.+.|+      +.||++|+|++
T Consensus         1 ~~I~VC~~~----~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Cl-g~C~~~P~v~i~~~------~~~y~~v~~~~   69 (77)
T cd02980           1 HHILVCTGT----ACGLRGAEELLEALEKELGIRGGDGRVTVERVGCL-GACGLAPVVVVYPD------GVWYGRVTPED   69 (77)
T ss_pred             CEEEEccCC----CcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCc-CcccCCCEEEEeCC------CeEEccCCHHH
Confidence            479999996    899995 7999999999999999889999999999 66778888888765      79999999999


Q ss_pred             HHHHHHHH
Q 015770          268 VPAILDQH  275 (400)
Q Consensus       268 v~~Iv~~h  275 (400)
                      +++||++|
T Consensus        70 ~~~il~~~   77 (77)
T cd02980          70 VEEIVEEL   77 (77)
T ss_pred             HHHHHHhC
Confidence            99999874

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.

>COG3411 Ferredoxin [Energy production and conversion]

Probab=99.39  E-value=2.6e-13  Score=103.94  Aligned_cols=58  Identities=29%  Similarity=0.495  Sum_probs=53.7

Q ss_pred             cEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCCHHHHHHHHHHCCccccceeccCC
Q 015770          226 QIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQL  290 (400)
Q Consensus       226 ~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~dv~~Iv~~hl~~G~iv~~l~rG~~  290 (400)
                      .|++.+++|+ |.|..||+++++|+      |+||++|+|+++++||++||.+|++++++.....
T Consensus         2 ~i~~t~tgCl-~~C~~gPvl~vYpe------gvWY~~V~p~~a~rIv~~hl~~Gr~Ve~~~~~~~   59 (64)
T COG3411           2 SIRVTRTGCL-GVCQDGPVLVVYPE------GVWYTRVDPEDARRIVQSHLLGGRPVEELIYHTG   59 (64)
T ss_pred             ceEEeecchh-hhhccCCEEEEecC------CeeEeccCHHHHHHHHHHHHhCCCcchhhcccCC
Confidence            4899999999 89999999999998      8999999999999999999999999999876543

>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes

Probab=99.34  E-value=2.2e-12  Score=103.47  Aligned_cols=74  Identities=22%  Similarity=0.413  Sum_probs=65.3

Q ss_pred             CcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCC----CCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEec
Q 015770          188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGL----KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY  262 (400)
Q Consensus       188 ~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL----~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~  262 (400)
                      +.+|+||++.    +|...| .+++++|++++..+++    ++.|.|..++|+ |.|..||+|++.        |.||++
T Consensus         1 ~~~v~vC~~~----~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~Cl-G~C~~gP~v~v~--------g~~y~~   67 (80)
T cd03064           1 KHVIRVCTGT----ACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECL-GACDLAPVMMIN--------DDVYGR   67 (80)
T ss_pred             CEEEEECCCc----HHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCc-CcCCCCCEEEEC--------CEEECC
Confidence            4689999995    898887 7999999999986543    567999999999 899999999995        799999


Q ss_pred             cCCCCHHHHHHH
Q 015770          263 VTPDDVPAILDQ  274 (400)
Q Consensus       263 Vtp~dv~~Iv~~  274 (400)
                      |+|+++++||++
T Consensus        68 vt~~~i~~i~~~   79 (80)
T cd03064          68 LTPEKVDAILEA   79 (80)
T ss_pred             CCHHHHHHHHHh
Confidence            999999999974

It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu

>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity

Probab=99.18  E-value=6.6e-11  Score=98.84  Aligned_cols=86  Identities=24%  Similarity=0.363  Sum_probs=71.4

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEec--CcEEeccCCCcchhH
Q 015770           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFP--EMIKYEGLKESDVDS  166 (400)
Q Consensus        89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVfP--d~iwY~~vt~~dVd~  166 (400)
                      .|||||+....+  .+|...+ ..|.+.|++++.+++. ..+++..+.|+|.|..+|.++|||  |++||..++++|+++
T Consensus         2 ~~ilVCth~rrd--~~C~~~g-~~l~~~l~~~l~~~~~-~~v~v~~~~clG~c~~gp~vvvyP~~~g~wy~~v~p~~v~~   77 (97)
T cd03062           2 PLVLVCTHGKRD--KRCGICG-PPLAAELRAELPEHGP-GGVRVWEVSHVGGHKFAGNVIIYPKGDGIWYGRVTPEHVPP   77 (97)
T ss_pred             CEEEEeCCCCCC--cChhhcC-HHHHHHHHHHHHHhCC-CceEEEeCCcCCccCcCCEEEEEeCCCeeEEeecCHHHHHH
Confidence            699999865432  4666543 5688888888887762 346778899999999999999999  999999999999999


Q ss_pred             HHHHHhhCCCCC
Q 015770          167 FVDDVLVNGKPW  178 (400)
Q Consensus       167 ~Vee~L~~G~~~  178 (400)
                      ||++|+.+++++
T Consensus        78 Iv~~hl~~g~~v   89 (97)
T cd03062          78 IVDRLILGGKII   89 (97)
T ss_pred             HHHHHhcCCcCC
Confidence            999999987765

The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.

>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16

Probab=99.14  E-value=8.2e-11  Score=94.78  Aligned_cols=74  Identities=14%  Similarity=0.164  Sum_probs=64.7

Q ss_pred             CcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCC--C--CCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEec
Q 015770          188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRG--L--KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY  262 (400)
Q Consensus       188 ~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~g--L--~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~  262 (400)
                      +.+|.||+..    .|..+| ..++++|+++|..++  +  ++.+.+..++|+ |.|+.||+|.+.        +.||++
T Consensus         1 ~~~i~vC~~~----~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gCl-G~C~~~P~v~V~--------~~~y~~   67 (80)
T cd03083           1 KYRIYLSDSI----TDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCT-GLCDQGPALLIN--------NRVFTR   67 (80)
T ss_pred             CEEEEEcCCh----HHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEecee-cCcCCCCeEEEC--------CEEECC
Confidence            3679999986    899987 799999999997554  4  556999999999 899999999994        789999


Q ss_pred             cCCCCHHHHHHH
Q 015770          263 VTPDDVPAILDQ  274 (400)
Q Consensus       263 Vtp~dv~~Iv~~  274 (400)
                      |+|+++++||+.
T Consensus        68 v~~~~v~~iv~~   79 (80)
T cd03083          68 LTPGRIDQIAEL   79 (80)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999964

HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved

>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH

Probab=99.08  E-value=2.2e-10  Score=92.33  Aligned_cols=74  Identities=19%  Similarity=0.346  Sum_probs=64.7

Q ss_pred             CcEEEEccCCCCCCCccccc-HHHHHHHHHHHH----hCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEec
Q 015770          188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY  262 (400)
Q Consensus       188 ~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~----~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~  262 (400)
                      +.+|.||++.    .|...| ..|+++|+++|.    +...++.+.|..++|+ |.|..||++++.        +.||++
T Consensus         1 ~~~i~vC~~~----~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~Cl-G~C~~gP~~~v~--------~~~~~~   67 (80)
T cd03081           1 RHVLKLCRAE----ACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCL-GLCACSPAAMID--------GEVHGR   67 (80)
T ss_pred             CeEEEEcCCh----HHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeec-CccCCCCEEEEC--------CEEECC
Confidence            3679999986    999997 799999999997    3345667999999999 899999999984        789999


Q ss_pred             cCCCCHHHHHHH
Q 015770          263 VTPDDVPAILDQ  274 (400)
Q Consensus       263 Vtp~dv~~Iv~~  274 (400)
                      ++|+++++||++
T Consensus        68 ~~~e~i~~il~~   79 (80)
T cd03081          68 VDPEKFDALLAE   79 (80)
T ss_pred             CCHHHHHHHHHc
Confidence            999999999964

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat

>PRK07539 NADH dehydrogenase subunit E; Validated

Probab=99.03  E-value=4.8e-10  Score=101.09  Aligned_cols=77  Identities=16%  Similarity=0.355  Sum_probs=67.4

Q ss_pred             CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHH-hCCC---CCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770          185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID-SRGL---KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW  259 (400)
Q Consensus       185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~-~~gL---~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w  259 (400)
                      +..+.+|+||++.    +|..+| ..++++|+++|. +.|.   ++.+.+..++|+ |.|..||+|.+.        +.|
T Consensus        71 p~gk~~I~VC~g~----~C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~Cl-G~C~~gPvv~V~--------~~~  137 (154)
T PRK07539         71 PVGRHVIQVCTST----PCWLRGGEAILAALKKKLGIKPGETTADGRFTLLEVECL-GACDNAPVVMIN--------DDT  137 (154)
T ss_pred             CCCCEEEEEcCCc----hHHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEcccc-CccCCCCEEEEC--------CEE
Confidence            4456789999996    899887 699999999998 5553   567999999999 899999999996        679


Q ss_pred             EeccCCCCHHHHHHH
Q 015770          260 YGYVTPDDVPAILDQ  274 (400)
Q Consensus       260 Yg~Vtp~dv~~Iv~~  274 (400)
                      |++|||+++++||++
T Consensus       138 y~~vt~e~v~~il~~  152 (154)
T PRK07539        138 YEDLTPEKIDELLDE  152 (154)
T ss_pred             eCCCCHHHHHHHHHh
Confidence            999999999999975

>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=99.02  E-value=6.1e-10  Score=99.43  Aligned_cols=78  Identities=24%  Similarity=0.499  Sum_probs=66.2

Q ss_pred             CCCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHH----hCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccce
Q 015770          184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (400)
Q Consensus       184 e~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~----~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~  258 (400)
                      ++..+.+|+||++.    +|...| ..|+++|+++|.    +...++.+.|..++|+ |.|..||+|.+.        |.
T Consensus        61 ~p~gk~~I~VC~g~----~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~Cl-G~C~~aP~v~V~--------~~  127 (145)
T PF01257_consen   61 EPKGKHHIRVCTGT----SCHLRGAEELLEALEEELGIKPGETTEDGKFTLEETGCL-GACDQAPVVMVD--------GE  127 (145)
T ss_dssp             SS--SEEEEEE-SH----HHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSS-SSGGGSSEEEEC--------CC
T ss_pred             CCCCCcEEEeCCCc----hHHhCCCHHHHHHHHHHhCCcccccCCCceEEEEECCCc-cccCCCCEEEEC--------CE
Confidence            34456899999996    899997 699999999995    3456778999999999 899999999994        78


Q ss_pred             EEeccCCCCHHHHHHH
Q 015770          259 WYGYVTPDDVPAILDQ  274 (400)
Q Consensus       259 wYg~Vtp~dv~~Iv~~  274 (400)
                      ||++|||+++.+||++
T Consensus       128 ~y~~vt~e~v~~il~~  143 (145)
T PF01257_consen  128 WYGNVTPEKVDEILEE  143 (145)
T ss_dssp             EEESSSCCHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHh
Confidence            9999999999999986

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....

>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit

Probab=98.93  E-value=2.1e-09  Score=96.26  Aligned_cols=77  Identities=14%  Similarity=0.377  Sum_probs=66.2

Q ss_pred             CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCC----CCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770          185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRG----LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW  259 (400)
Q Consensus       185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~g----L~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w  259 (400)
                      +..+.+|+||++.    +|...| ..|+++|+++|....    .++.+.+..++|+ |.|..||+|.+.        +.|
T Consensus        65 p~gk~~I~VC~g~----~C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~Cl-G~C~~aP~v~V~--------~~~  131 (148)
T TIGR01958        65 PVGRYHLQVCTNV----PCALRGSEALLKYLENKLGIKPGETTPDGRFTLVEVECL-GACGNAPVMMIN--------DDY  131 (148)
T ss_pred             CCCCEEEEEcCCc----hhhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcc-CccCCCCEEEEC--------CEE
Confidence            4456799999996    898887 699999999997432    3567999999999 899999999997        579


Q ss_pred             EeccCCCCHHHHHHH
Q 015770          260 YGYVTPDDVPAILDQ  274 (400)
Q Consensus       260 Yg~Vtp~dv~~Iv~~  274 (400)
                      |++|||+++++||++
T Consensus       132 y~~vt~e~v~~il~~  146 (148)
T TIGR01958       132 YEFLTPEKLDELLER  146 (148)
T ss_pred             eCCCCHHHHHHHHHh
Confidence            999999999999975

This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.

>COG3411 Ferredoxin [Energy production and conversion]

Probab=98.92  E-value=9e-10  Score=84.55  Aligned_cols=49  Identities=22%  Similarity=0.405  Sum_probs=45.7

Q ss_pred             ceeeeeccCCCCCCCCeEEEecCcEEeccCCCcchhHHHHHHhhCCCCC
Q 015770          130 VKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPW  178 (400)
Q Consensus       130 vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dVd~~Vee~L~~G~~~  178 (400)
                      ++++-+.|++.|..||.++||||++||.+++++++++|+++||.+|++-
T Consensus         3 i~~t~tgCl~~C~~gPvl~vYpegvWY~~V~p~~a~rIv~~hl~~Gr~V   51 (64)
T COG3411           3 IRVTRTGCLGVCQDGPVLVVYPEGVWYTRVDPEDARRIVQSHLLGGRPV   51 (64)
T ss_pred             eEEeecchhhhhccCCEEEEecCCeeEeccCHHHHHHHHHHHHhCCCcc
Confidence            5677899999999999999999999999999999999999999998764

>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

Probab=98.69  E-value=3.7e-08  Score=77.59  Aligned_cols=77  Identities=22%  Similarity=0.392  Sum_probs=65.2

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcchhHHH
Q 015770           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFV  168 (400)
Q Consensus        89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dVd~~V  168 (400)
                      .||+||...      .|...++..+.+.|.+++...+.+..+.+..+.|.|.|..+|.|+|+|++.||..++++++++|+
T Consensus         1 ~~I~VC~~~------~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg~C~~~P~v~i~~~~~~y~~v~~~~~~~il   74 (77)
T cd02980           1 HHILVCTGT------ACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGVWYGRVTPEDVEEIV   74 (77)
T ss_pred             CEEEEccCC------CcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCcCcccCCCEEEEeCCCeEEccCCHHHHHHHH
Confidence            379999743      56666677888999999988766556777889999999999999999999999999999999998


Q ss_pred             HHH
Q 015770          169 DDV  171 (400)
Q Consensus       169 ee~  171 (400)
                      ++|
T Consensus        75 ~~~   77 (77)
T cd02980          75 EEL   77 (77)
T ss_pred             HhC
Confidence            764

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.

>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens

Probab=98.64  E-value=4.3e-08  Score=77.64  Aligned_cols=68  Identities=19%  Similarity=0.260  Sum_probs=60.4

Q ss_pred             cEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCC
Q 015770          189 SYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDD  267 (400)
Q Consensus       189 ~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~d  267 (400)
                      ..|.||++.    .|...| ..|+++|+++|...    .+.+..++|+ |.|..||+++++        +..|++++|++
T Consensus         2 ~~I~vC~~~----~C~~~Ga~~l~~~l~~~L~~~----~v~l~~~~Cl-G~C~~gP~v~V~--------~~~~~~~t~~~   64 (72)
T cd03082           2 LTVRVCDSL----SCAMAGAEELLAALEAGLGPE----GVRVVRAPCV-GRCERAPAALVG--------QRPVDGATPAA   64 (72)
T ss_pred             eEEEEcCCh----HHHHCCHHHHHHHHHHHhCCC----eEEEEecCcC-CccCCCCeEEEC--------CEEeCCcCHHH
Confidence            579999996    999987 69999999998542    5999999999 899999999997        67899999999


Q ss_pred             HHHHHH
Q 015770          268 VPAILD  273 (400)
Q Consensus       268 v~~Iv~  273 (400)
                      ++++++
T Consensus        65 i~~~~~   70 (72)
T cd03082          65 VAAAVE   70 (72)
T ss_pred             HHHHHh
Confidence            999886

W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen

>PRK05988 formate dehydrogenase subunit gamma; Validated

Probab=98.41  E-value=7.2e-07  Score=80.85  Aligned_cols=77  Identities=17%  Similarity=0.286  Sum_probs=66.4

Q ss_pred             CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHH----hCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770          185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW  259 (400)
Q Consensus       185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~----~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w  259 (400)
                      +..+.+|.||++.    .|...| ..|+++|+++|.    +-..++.+.+..+.|+ |.|..||++.+.        +..
T Consensus        72 p~Gk~~I~VC~~~----~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~Cl-G~C~~aP~~~in--------~~~  138 (156)
T PRK05988         72 PPGRHVLKLCRAE----ACQAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCL-GLCACSPAAMLD--------GEV  138 (156)
T ss_pred             CCCCEEEEEeCCc----hhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeec-CccCCCCeEEEC--------CEE
Confidence            4567889999996    999997 799999999986    2234567999999999 899999999995        679


Q ss_pred             EeccCCCCHHHHHHH
Q 015770          260 YGYVTPDDVPAILDQ  274 (400)
Q Consensus       260 Yg~Vtp~dv~~Iv~~  274 (400)
                      |++|||+++++|+++
T Consensus       139 ~~~lt~~~~~~il~~  153 (156)
T PRK05988        139 HGRLDPQRLDALLAE  153 (156)
T ss_pred             eCCCCHHHHHHHHHH
Confidence            999999999999976

>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed

Probab=98.38  E-value=7.1e-07  Score=81.90  Aligned_cols=78  Identities=19%  Similarity=0.303  Sum_probs=67.0

Q ss_pred             CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHH----hCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770          185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW  259 (400)
Q Consensus       185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~----~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w  259 (400)
                      +..+..|.||++.    .|...| ..|+++|+++|.    +..-++.+.+..+.|+ |.|..||++.+.        +..
T Consensus        85 P~Gk~~I~VC~g~----aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~Cl-G~C~~AP~~~Vn--------~~~  151 (169)
T PRK07571         85 PSGEHTCVVCTGT----ACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCL-GACGIAPAVVFD--------GKV  151 (169)
T ss_pred             CCCCEEEEEcCCh----HHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEeccc-CccCCCCeEEEC--------CEE
Confidence            4467789999996    899987 799999999986    2334567999999999 899999999996        789


Q ss_pred             EeccCCCCHHHHHHHH
Q 015770          260 YGYVTPDDVPAILDQH  275 (400)
Q Consensus       260 Yg~Vtp~dv~~Iv~~h  275 (400)
                      |++|+|+++++||++.
T Consensus       152 ~~~lt~e~v~~il~~~  167 (169)
T PRK07571        152 AGKQTPESVLEKVQGW  167 (169)
T ss_pred             eCCCCHHHHHHHHHHH
Confidence            9999999999999863

>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes

Probab=98.33  E-value=7.7e-07  Score=71.23  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             ceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcc
Q 015770           88 GRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESD  163 (400)
Q Consensus        88 ~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~d  163 (400)
                      ++||+||...      .|...++..+.+.|.+.++....    +..+.+.-+.|+|.|..+|.|+|+  ++||..+++++
T Consensus         1 ~~~v~vC~~~------~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~ClG~C~~gP~v~v~--g~~y~~vt~~~   72 (80)
T cd03064           1 KHVIRVCTGT------ACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMIN--DDVYGRLTPEK   72 (80)
T ss_pred             CEEEEECCCc------HHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCcCcCCCCCEEEEC--CEEECCCCHHH
Confidence            4689999743      56666777788888888765432    334566779999999999999994  89999999999


Q ss_pred             hhHHHHH
Q 015770          164 VDSFVDD  170 (400)
Q Consensus       164 Vd~~Vee  170 (400)
                      +++|+++
T Consensus        73 i~~i~~~   79 (80)
T cd03064          73 VDAILEA   79 (80)
T ss_pred             HHHHHHh
Confidence            9999875

It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu

>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]

Probab=98.27  E-value=1.5e-06  Score=78.82  Aligned_cols=78  Identities=18%  Similarity=0.402  Sum_probs=67.6

Q ss_pred             CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHH----hCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770          185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW  259 (400)
Q Consensus       185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~----~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w  259 (400)
                      +..+.+|-||++.    .|...| ..++++|++.|.    +---++.+.+..+.|+ |-|..+|++++.        +..
T Consensus        74 P~Gr~~i~VC~~t----~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~v~Cl-GaC~~AP~vmin--------d~~  140 (160)
T COG1905          74 PVGRHHIRVCTGT----ACHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECL-GACGQAPVVMIN--------DDV  140 (160)
T ss_pred             cCCCeEEEEeCCc----HHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEeeeeee-cccccCCEEEEC--------Cch
Confidence            4557899999996    999998 699999999987    3344678999999999 889999999996        678


Q ss_pred             EeccCCCCHHHHHHHH
Q 015770          260 YGYVTPDDVPAILDQH  275 (400)
Q Consensus       260 Yg~Vtp~dv~~Iv~~h  275 (400)
                      |+++||+.+.+||++.
T Consensus       141 ~~~lt~e~l~eil~~~  156 (160)
T COG1905         141 YGRLTPEKLEEILEKL  156 (160)
T ss_pred             hccCCHHHHHHHHHHH
Confidence            9999999999999874

>PRK12373 NADH dehydrogenase subunit E; Provisional

Probab=98.23  E-value=2.4e-06  Score=87.52  Aligned_cols=85  Identities=18%  Similarity=0.319  Sum_probs=71.1

Q ss_pred             CCCC-cEEEEccCCCCCCCccccc-HHHHHHHHHHHHhC----CCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccce
Q 015770          185 GLTG-SYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR----GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (400)
Q Consensus       185 ~~~~-~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~----gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~  258 (400)
                      +..+ .+|.||+..    .|..+| ..|++.|+++|.-.    .-++.+.+..+.|| |.|..+|+|.+.        +.
T Consensus        86 P~Gk~~~I~VC~~t----~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCL-GaC~~APv~~In--------d~  152 (400)
T PRK12373         86 PVGTRAHIQVCGTT----PCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECL-GACVNAPMVQIG--------KD  152 (400)
T ss_pred             CCCCceEEEEcCCh----HHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeec-CccCCCCeEEEC--------CE
Confidence            3344 689999996    999997 79999999998632    23456899999999 899999999996        67


Q ss_pred             EEeccCCCCHHHHHHHHHHCCcccc
Q 015770          259 WYGYVTPDDVPAILDQHIAKGEIIE  283 (400)
Q Consensus       259 wYg~Vtp~dv~~Iv~~hl~~G~iv~  283 (400)
                      +|++||++++.+||++ +..|+.+.
T Consensus       153 ~y~~LTpe~v~~IL~~-l~ag~~~~  176 (400)
T PRK12373        153 YYEDLTPERLEEIIDA-FAAGKGPV  176 (400)
T ss_pred             EeCCCCHHHHHHHHHH-HhCCCCCC
Confidence            9999999999999987 68888654

>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH

Probab=98.21  E-value=3e-06  Score=70.41  Aligned_cols=78  Identities=15%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             EEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEe-cCc-EEeccCCCcchhHH
Q 015770           90 HVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIF-PEM-IKYEGLKESDVDSF  167 (400)
Q Consensus        90 HVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVf-Pd~-iwY~~vt~~dVd~~  167 (400)
                      +|+||...      .|.+.++..+.++|.+++++++.  .+.+..++|.|.|..+|.|-|+ |++ +.|..++++|+++|
T Consensus         2 ~I~Vc~gT------~ciAaGA~~V~~al~~ei~~~gl--~v~v~~tGC~G~C~~ePlV~V~~p~g~v~Y~~V~~edv~~I   73 (92)
T cd03063           2 RIYVPRDA------AALALGADEVAEAIEAEAAARGL--AATIVRNGSRGMYWLEPLVEVETPGGRVAYGPVTPADVASL   73 (92)
T ss_pred             EEEEeCCh------hhhhhCHHHHHHHHHHHHHHcCC--eEEEEEecCceecCCCCEEEEEeCCCcEEEEeCCHHHHHHH
Confidence            47777532      45566778889999999998876  4667889999999999999997 999 99999999999999


Q ss_pred             HHHHhhCC
Q 015770          168 VDDVLVNG  175 (400)
Q Consensus       168 Vee~L~~G  175 (400)
                      +++|+.+.
T Consensus        74 v~~~~~~~   81 (92)
T cd03063          74 LDAGALEG   81 (92)
T ss_pred             HHHHhhcC
Confidence            99998753

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c

>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH

Probab=97.93  E-value=1.7e-05  Score=63.91  Aligned_cols=74  Identities=15%  Similarity=0.164  Sum_probs=57.2

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhc----cCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcch
Q 015770           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTR----KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV  164 (400)
Q Consensus        89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar----~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dV  164 (400)
                      +||.||...      .|...++..+.+.|.+.+...    ..+....+..+.|+|.|+.+|.++|  ++.||..++++++
T Consensus         2 ~~i~vC~~~------~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~ClG~C~~gP~~~v--~~~~~~~~~~e~i   73 (80)
T cd03081           2 HVLKLCRAE------ACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPAAMI--DGEVHGRVDPEKF   73 (80)
T ss_pred             eEEEEcCCh------HHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeecCccCCCCEEEE--CCEEECCCCHHHH
Confidence            568889743      455556677888888888633    2233455677899999999999987  9999999999999


Q ss_pred             hHHHHH
Q 015770          165 DSFVDD  170 (400)
Q Consensus       165 d~~Vee  170 (400)
                      ++|+++
T Consensus        74 ~~il~~   79 (80)
T cd03081          74 DALLAE   79 (80)
T ss_pred             HHHHHc
Confidence            999864

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat

>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=97.81  E-value=3.5e-05  Score=68.83  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=61.1

Q ss_pred             CCcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHh----ccCCCCceeeeeccCCCCCCCCeEEEecCcEEec
Q 015770           82 GTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKT----RKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYE  157 (400)
Q Consensus        82 GTa~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLka----r~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~  157 (400)
                      -+.+..++||+||...      .|...++..+.+.|.+.+.-    ...+....+..+.|+|.|..+|.|+|  ++.||.
T Consensus        59 ~~~p~gk~~I~VC~g~------~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~ClG~C~~aP~v~V--~~~~y~  130 (145)
T PF01257_consen   59 RLEPKGKHHIRVCTGT------SCHLRGAEELLEALEEELGIKPGETTEDGKFTLEETGCLGACDQAPVVMV--DGEWYG  130 (145)
T ss_dssp             -SSS--SEEEEEE-SH------HHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSSSSGGGSSEEEE--CCCEEE
T ss_pred             ccCCCCCcEEEeCCCc------hHHhCCCHHHHHHHHHHhCCcccccCCCceEEEEECCCccccCCCCEEEE--CCEEEC
Confidence            3455567899999743      56666677788888888852    22344456677899999999999999  788999


Q ss_pred             cCCCcchhHHHHHH
Q 015770          158 GLKESDVDSFVDDV  171 (400)
Q Consensus       158 ~vt~~dVd~~Vee~  171 (400)
                      .++++++++|++++
T Consensus       131 ~vt~e~v~~il~~l  144 (145)
T PF01257_consen  131 NVTPEKVDEILEEL  144 (145)
T ss_dssp             SSSCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999863

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....

>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]

Probab=97.77  E-value=3.3e-05  Score=71.75  Aligned_cols=86  Identities=17%  Similarity=0.324  Sum_probs=69.5

Q ss_pred             CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHHh-CC---CCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770          185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDS-RG---LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW  259 (400)
Q Consensus       185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~-~g---L~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w  259 (400)
                      +..++||.||+..    -|...| ..+.+++++.+.- .|   -+....|.++.|+ |.|+.+|+|-+.        ..+
T Consensus       110 p~gKy~v~VC~tt----pC~lrg~d~i~ea~~k~lgi~~Gett~d~~Ftl~e~eCl-GaCvnaPmi~IN--------D~y  176 (233)
T KOG3196|consen  110 PVGKYHVQVCTTT----PCMLRGSDDILEACKKQLGIKVGETTKDGLFTLEEVECL-GACVNAPMIAIN--------DDY  176 (233)
T ss_pred             CCCCceEEEecCc----HHhhhccHHHHHHHHHHhCccccccccccceeeecchhh-hhhccCceeeec--------chh
Confidence            4467899999986    899887 6888888887752 12   1235789999999 899999999997        459


Q ss_pred             EeccCCCCHHHHHHHHHHCCccccc
Q 015770          260 YGYVTPDDVPAILDQHIAKGEIIER  284 (400)
Q Consensus       260 Yg~Vtp~dv~~Iv~~hl~~G~iv~~  284 (400)
                      |+.+|++++.+|++. |.+|+....
T Consensus       177 yedlt~k~l~eIle~-L~~~k~pp~  200 (233)
T KOG3196|consen  177 YEDLTPKKLVEILED-LKAGKKPPA  200 (233)
T ss_pred             hccCCHHHHHHHHHH-HhcCCCCCC
Confidence            999999999999987 788876544

>PRK07539 NADH dehydrogenase subunit E; Validated

Probab=97.62  E-value=9.2e-05  Score=66.86  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=61.2

Q ss_pred             CCcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHH-hccC---CCCceeeeeccCCCCCCCCeEEEecCcEEec
Q 015770           82 GTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALK-TRKD---DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYE  157 (400)
Q Consensus        82 GTa~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLk-ar~~---~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~  157 (400)
                      -+.+..++||+||...      .|...++..+.+.|.+.+. ..+.   +....+.-+.|+|.|+.+|.|+|.+  .||.
T Consensus        68 ~~~p~gk~~I~VC~g~------~C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~gPvv~V~~--~~y~  139 (154)
T PRK07539         68 FRQPVGRHVIQVCTST------PCWLRGGEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNAPVVMIND--DTYE  139 (154)
T ss_pred             CcCCCCCEEEEEcCCc------hHHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCCCEEEECC--EEeC
Confidence            3455567889999743      4666667778888888876 3321   2234556689999999999999985  5999


Q ss_pred             cCCCcchhHHHHH
Q 015770          158 GLKESDVDSFVDD  170 (400)
Q Consensus       158 ~vt~~dVd~~Vee  170 (400)
                      +++++++++|+++
T Consensus       140 ~vt~e~v~~il~~  152 (154)
T PRK07539        140 DLTPEKIDELLDE  152 (154)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999999875

>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit

Probab=97.57  E-value=0.00012  Score=65.64  Aligned_cols=81  Identities=20%  Similarity=0.224  Sum_probs=61.1

Q ss_pred             CCcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEec
Q 015770           82 GTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYE  157 (400)
Q Consensus        82 GTa~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~  157 (400)
                      -+.|..+.||+||...      .|...++..+.+.|.+.|.....    +....+..+.|+|.|+.+|.|+|.+  .+|.
T Consensus        62 ~~~p~gk~~I~VC~g~------~C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~aP~v~V~~--~~y~  133 (148)
T TIGR01958        62 DTEPVGRYHLQVCTNV------PCALRGSEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNAPVMMIND--DYYE  133 (148)
T ss_pred             CcCCCCCEEEEEcCCc------hhhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCCCEEEECC--EEeC
Confidence            3445557889999743      45555667788888888864422    3334556689999999999999985  5999


Q ss_pred             cCCCcchhHHHHH
Q 015770          158 GLKESDVDSFVDD  170 (400)
Q Consensus       158 ~vt~~dVd~~Vee  170 (400)
                      .++++++++|+++
T Consensus       134 ~vt~e~v~~il~~  146 (148)
T TIGR01958       134 FLTPEKLDELLER  146 (148)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999999875

This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.

>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16

Probab=97.51  E-value=0.00016  Score=58.14  Aligned_cols=74  Identities=18%  Similarity=0.180  Sum_probs=55.8

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcch
Q 015770           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV  164 (400)
Q Consensus        89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dV  164 (400)
                      +||.||...      .|...++..+.++|.+++..+..    +....+.-+.|+|.|..+|.+.|  +.++|..++++++
T Consensus         2 ~~i~vC~~~------~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gClG~C~~~P~v~V--~~~~y~~v~~~~v   73 (80)
T cd03083           2 YRIYLSDSI------TDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCTGLCDQGPALLI--NNRVFTRLTPGRI   73 (80)
T ss_pred             EEEEEcCCh------HHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEeceecCcCCCCeEEE--CCEEECCCCHHHH
Confidence            568888643      34444667788888888865542    22344566899999999999999  6789999999999


Q ss_pred             hHHHHH
Q 015770          165 DSFVDD  170 (400)
Q Consensus       165 d~~Vee  170 (400)
                      ++|++.
T Consensus        74 ~~iv~~   79 (80)
T cd03083          74 DQIAEL   79 (80)
T ss_pred             HHHHhc
Confidence            999864

HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved

>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins

Probab=97.43  E-value=0.00065  Score=58.80  Aligned_cols=79  Identities=24%  Similarity=0.419  Sum_probs=59.7

Q ss_pred             EEEccCCCCC---CCcccc-cHHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEc-CCCCCCccceEEeccCC
Q 015770          191 VFVCSHGSRD---KRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYS-PDSEGKIMGHWYGYVTP  265 (400)
Q Consensus       191 IlVCth~~RD---~rCg~~-G~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~-p~~~~~~~g~wYg~Vtp  265 (400)
                      |+||+-=++.   ..-+.. |..|+++|++.+...++.++|.|..+.||.+ |..|-.|-+. |++    ..+.||.++|
T Consensus         1 l~VC~tCr~~~~~~~~~~~~G~~L~~aL~~~~~~~~~~~~v~v~~v~CL~~-C~r~CtVA~~~~gK----~tYlfGdl~p   75 (116)
T PF07845_consen    1 LFVCTTCRRSGEDPEDGPRPGAALLDALRAALADAPLPDGVEVRPVECLSA-CDRPCTVALQAPGK----WTYLFGDLDP   75 (116)
T ss_pred             CEEeCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCceEEEeccHHhc-CCCceEEEEEcCCC----cEEEEecCCc
Confidence            6899853322   012222 6899999999999988888899999999955 5567777766 332    4688999999


Q ss_pred             -CCHHHHHHH
Q 015770          266 -DDVPAILDQ  274 (400)
Q Consensus       266 -~dv~~Iv~~  274 (400)
                       ++++.||+-
T Consensus        76 ~~~a~~il~~   85 (116)
T PF07845_consen   76 DEDAEDILAF   85 (116)
T ss_pred             ccCHHHHHHH
Confidence             889999974

The region in question is approximately 130 amino acids long.

>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity []

Probab=97.04  E-value=0.0026  Score=60.45  Aligned_cols=90  Identities=24%  Similarity=0.388  Sum_probs=63.3

Q ss_pred             cCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEe----cCcEEeccCCC
Q 015770           86 PYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIF----PEMIKYEGLKE  161 (400)
Q Consensus        86 ~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVf----Pd~iwY~~vt~  161 (400)
                      ..+.+||||+-+..  -.+|... +..|.+.|.+.+..++... ..+-.+.-.|.+.-.+.|++|    |+++||.++++
T Consensus       130 ~~~~~iLVCtHg~R--D~rCg~~-Gp~l~~~l~~~~~~~~l~~-~~V~~iSHiGGHkfAgNvIiy~~~~p~g~wyGrv~p  205 (230)
T PF06999_consen  130 PDKPLILVCTHGKR--DKRCGIL-GPPLARELEKELRERGLSR-DRVWEISHIGGHKFAGNVIIYSKPKPDGIWYGRVTP  205 (230)
T ss_pred             CCCCEEEEcCCCCc--CCchhcc-cHHHHHHHHHHhhhcCCcc-ceEEEecccccceecCeEEEEecCCCcEEEEEeeCH
Confidence            46788999975432  1255442 3556677777776665432 124444445666668999999    99999999999


Q ss_pred             cchhHHHHHHhhCCCCCC
Q 015770          162 SDVDSFVDDVLVNGKPWA  179 (400)
Q Consensus       162 ~dVd~~Vee~L~~G~~~l  179 (400)
                      ++++.||+..+.+|+.+.
T Consensus       206 ~~v~~iv~~t~~~g~vi~  223 (230)
T PF06999_consen  206 EDVEGIVDATILDGKVIP  223 (230)
T ss_pred             HHHHHHHHHHHhCCcCcC
Confidence            999999999788877653

>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens

Probab=96.85  E-value=0.0011  Score=52.51  Aligned_cols=69  Identities=17%  Similarity=0.206  Sum_probs=52.0

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcchhHHH
Q 015770           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFV  168 (400)
Q Consensus        89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dVd~~V  168 (400)
                      ++|.||...      .|...++..+.+.|.+.+...    ...+.-+.|+|.|+.+|.++|+.+  .|.+++++++++++
T Consensus         2 ~~I~vC~~~------~C~~~Ga~~l~~~l~~~L~~~----~v~l~~~~ClG~C~~gP~v~V~~~--~~~~~t~~~i~~~~   69 (72)
T cd03082           2 LTVRVCDSL------SCAMAGAEELLAALEAGLGPE----GVRVVRAPCVGRCERAPAALVGQR--PVDGATPAAVAAAV   69 (72)
T ss_pred             eEEEEcCCh------HHHHCCHHHHHHHHHHHhCCC----eEEEEecCcCCccCCCCeEEECCE--EeCCcCHHHHHHHH
Confidence            568899743      445455666777777776432    355667899999999999999876  68889999998886


Q ss_pred             H
Q 015770          169 D  169 (400)
Q Consensus       169 e  169 (400)
                      +
T Consensus        70 ~   70 (72)
T cd03082          70 E   70 (72)
T ss_pred             h
Confidence            5

W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen

>PRK05988 formate dehydrogenase subunit gamma; Validated

Probab=96.40  E-value=0.0094  Score=54.12  Aligned_cols=81  Identities=17%  Similarity=0.149  Sum_probs=59.3

Q ss_pred             CcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhc----cCCCCceeeeeccCCCCCCCCeEEEecCcEEecc
Q 015770           83 TVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTR----KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEG  158 (400)
Q Consensus        83 Ta~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar----~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~  158 (400)
                      +-+..++||.||...      .|...++..+.+.|.+.|.-.    ..+....+..+.|+|.|+.+|.++|  +...|.+
T Consensus        70 ~~p~Gk~~I~VC~~~------~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~aP~~~i--n~~~~~~  141 (156)
T PRK05988         70 THPPGRHVLKLCRAE------ACQAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACSPAAML--DGEVHGR  141 (156)
T ss_pred             CCCCCCEEEEEeCCc------hhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEE--CCEEeCC
Confidence            345567778899743      455556777888888877533    2232334555899999999998888  6778999


Q ss_pred             CCCcchhHHHHHH
Q 015770          159 LKESDVDSFVDDV  171 (400)
Q Consensus       159 vt~~dVd~~Vee~  171 (400)
                      +++++++++++++
T Consensus       142 lt~~~~~~il~~~  154 (156)
T PRK05988        142 LDPQRLDALLAEA  154 (156)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999998764

>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed

Probab=96.20  E-value=0.012  Score=54.09  Aligned_cols=81  Identities=14%  Similarity=0.083  Sum_probs=59.2

Q ss_pred             CcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhc----cCCCCceeeeeccCCCCCCCCeEEEecCcEEecc
Q 015770           83 TVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTR----KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEG  158 (400)
Q Consensus        83 Ta~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar----~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~  158 (400)
                      +.+..+++|.||..-      .|...++..+.+.|.+.|.-.    ..+....+....|+|.|+.+|.++|  ++..|.+
T Consensus        83 ~~P~Gk~~I~VC~g~------aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~ClG~C~~AP~~~V--n~~~~~~  154 (169)
T PRK07571         83 LKPSGEHTCVVCTGT------ACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCLGACGIAPAVVF--DGKVAGK  154 (169)
T ss_pred             cCCCCCEEEEEcCCh------HHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecccCccCCCCeEEE--CCEEeCC
Confidence            344556778888643      455556777888888777532    2233344566899999999999988  6668999


Q ss_pred             CCCcchhHHHHHH
Q 015770          159 LKESDVDSFVDDV  171 (400)
Q Consensus       159 vt~~dVd~~Vee~  171 (400)
                      ++++++++|++++
T Consensus       155 lt~e~v~~il~~~  167 (169)
T PRK07571        155 QTPESVLEKVQGW  167 (169)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999999875

>COG5469 Predicted metal-binding protein [Function unknown]

Probab=96.02  E-value=0.024  Score=50.19  Aligned_cols=85  Identities=18%  Similarity=0.358  Sum_probs=62.3

Q ss_pred             CCCcEEEEccCCCCCCC----cccc-cHHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEE
Q 015770          186 LTGSYVFVCSHGSRDKR----CGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWY  260 (400)
Q Consensus       186 ~~~~~IlVCth~~RD~r----Cg~~-G~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wY  260 (400)
                      ..++.+|||..=+++.-    =+-. |..|.+.|.+...+-.+.....|..++|| .-|..|-+|.+..+++   ..+-|
T Consensus        15 ~~~htlfVCksC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl-~~C~r~c~vA~~~~~k---~sYLF   90 (143)
T COG5469          15 MPKHTLFVCKSCRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEFEIQTVECL-AACNRGCVVAFSGPGK---PSYLF   90 (143)
T ss_pred             cCceEEEEeccccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccceeeeeHhh-hhcCCCeEEEEecCCC---ceEEE
Confidence            35688999995332211    1112 56889999887777677667889999999 6788999998874421   35889


Q ss_pred             eccCCCC-HHHHHHH
Q 015770          261 GYVTPDD-VPAILDQ  274 (400)
Q Consensus       261 g~Vtp~d-v~~Iv~~  274 (400)
                      |.++|+| +..||+-
T Consensus        91 gdL~p~d~a~dLl~~  105 (143)
T COG5469          91 GDLTPDDSASDLLEF  105 (143)
T ss_pred             ccCCccccHHHHHHH
Confidence            9999999 8888874

>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]

Probab=94.79  E-value=0.054  Score=49.46  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=56.3

Q ss_pred             CceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHh----ccCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCc
Q 015770           87 YGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKT----RKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKES  162 (400)
Q Consensus        87 Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLka----r~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~  162 (400)
                      -++||-||.+-      .|...+++.+.+.|.+.++-    -..+.+..+.-+.|+|.|+.+|.|.|.=+  .|.+++++
T Consensus        76 Gr~~i~VC~~t------~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~v~ClGaC~~AP~vmind~--~~~~lt~e  147 (160)
T COG1905          76 GRHHIRVCTGT------ACHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECLGACGQAPVVMINDD--VYGRLTPE  147 (160)
T ss_pred             CCeEEEEeCCc------HHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEeeeeeecccccCCEEEECCc--hhccCCHH
Confidence            36789999753      34555677788888877762    22233334444799999999999988654  57779999


Q ss_pred             chhHHHHHHh
Q 015770          163 DVDSFVDDVL  172 (400)
Q Consensus       163 dVd~~Vee~L  172 (400)
                      .+++|++.+.
T Consensus       148 ~l~eil~~~~  157 (160)
T COG1905         148 KLEEILEKLK  157 (160)
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>PRK12373 NADH dehydrogenase subunit E; Provisional

Probab=94.24  E-value=0.13  Score=53.39  Aligned_cols=80  Identities=20%  Similarity=0.208  Sum_probs=57.9

Q ss_pred             eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcch
Q 015770           89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV  164 (400)
Q Consensus        89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dV  164 (400)
                      +||.||..-      .|...+++.|.+.|.+.|.-...    +....+....|+|.|..+|.++|-  ...|..++.+++
T Consensus        91 ~~I~VC~~t------~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCLGaC~~APv~~In--d~~y~~LTpe~v  162 (400)
T PRK12373         91 AHIQVCGTT------PCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECLGACVNAPMVQIG--KDYYEDLTPERL  162 (400)
T ss_pred             eEEEEcCCh------HHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEEC--CEEeCCCCHHHH
Confidence            689999743      45555677788888877754322    222334557899999999999984  447999999999


Q ss_pred             hHHHHHHhhCCCC
Q 015770          165 DSFVDDVLVNGKP  177 (400)
Q Consensus       165 d~~Vee~L~~G~~  177 (400)
                      ++|++++ ..|++
T Consensus       163 ~~IL~~l-~ag~~  174 (400)
T PRK12373        163 EEIIDAF-AAGKG  174 (400)
T ss_pred             HHHHHHH-hCCCC
Confidence            9999875 45544

>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins

Probab=93.02  E-value=0.36  Score=41.88  Aligned_cols=90  Identities=12%  Similarity=0.039  Sum_probs=53.4

Q ss_pred             EEEEeeCCCCccc-ccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEecCcEE---eccCCC-cchh
Q 015770           91 VFLCFKGPEMWVA-RVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIK---YEGLKE-SDVD  165 (400)
Q Consensus        91 VfVc~e~p~~Wps-~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVfPd~iw---Y~~vt~-~dVd  165 (400)
                      ||||++....|.. .-+...+..|.+.|.+++........+.++-..|+..|..+..|-+-=.++|   |..+++ ++++
T Consensus         1 l~VC~tCr~~~~~~~~~~~~G~~L~~aL~~~~~~~~~~~~v~v~~v~CL~~C~r~CtVA~~~~gK~tYlfGdl~p~~~a~   80 (116)
T PF07845_consen    1 LFVCTTCRRSGEDPEDGPRPGAALLDALRAALADAPLPDGVEVRPVECLSACDRPCTVALQAPGKWTYLFGDLDPDEDAE   80 (116)
T ss_pred             CEEeCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCceEEEeccHHhcCCCceEEEEEcCCCcEEEEecCCcccCHH
Confidence            5899986655432 1122223345555555555444444567777899999998777766633334   556766 6777


Q ss_pred             HHH---HHHhhCCCCCCC
Q 015770          166 SFV---DDVLVNGKPWAS  180 (400)
Q Consensus       166 ~~V---ee~L~~G~~~l~  180 (400)
                      +|+   +.|.....-|.|
T Consensus        81 ~il~~a~~Y~~s~dG~vp   98 (116)
T PF07845_consen   81 DILAFAALYAASPDGLVP   98 (116)
T ss_pred             HHHHHHHHHHhCCCCccc
Confidence            776   455555444444

The region in question is approximately 130 amino acids long.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	400
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	4e-21
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Length = 110

 Score = 86.8 bits (215), Expect = 4e-21
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 191 VFVCSH----GSRDKRCGVCG-PALIEKFNAEIDSR-GLKDQIFVKPCSHIGGHKYAGNL 244
           VFVC      G     C   G   + + F  +I +   L     + P   +        +
Sbjct: 6   VFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVV 65

Query: 245 IVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERL 285
           +VY PD      G WYG V P+DV  I+++H+  GE +ERL
Sbjct: 66  VVY-PD------GVWYGQVKPEDVDEIVEKHLKGGEPVERL 99

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Length = 110

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 89  RHVFLC--FKGPEMWVARVEASDTDTLPKLLASALKTRKD-DMTVKSLMTVCGGGEGTDG 145
           +HVF+C   + P           +  + +     ++T     MT     T C        
Sbjct: 4   KHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGP 63

Query: 146 DVLIFPEMIKYEGLKESDVDSFVDDVLVNGKP 177
            V+++P+ + Y  +K  DVD  V+  L  G+P
Sbjct: 64  VVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEP 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 47/322 (14%), Positives = 89/322 (27%), Gaps = 91/322 (28%)

Query: 31  LLILSHALHPTRTRT-----RILITRTDTNNMSTISAE-------DDAKYGFTREE---- 74
           LL+L +  +           +IL+T         +SA        D      T +E    
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 75  ------MYKEKL---AGTVNPYGRHVF--LCFKGPEMWVARVEASDTDTLPKLLASALKT 123
                    + L     T NP    +       G   W    +  + D L  ++ S+L  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNV 365

Query: 124 RKDDMTVKSLMTVCGGGEGTDGDVLIFPE---------MIKYEGLKESDVDSFVDDV--- 171
            +     + +               +FP           + +  + +SDV   V+ +   
Sbjct: 366 LEPA-EYRKMFDRLS----------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 172 -LVNGKPWASGVQEGLTGSYVFVCSHGSRD----KRCGVCGPALIEKFNAEIDSRGLKDQ 226
            LV            +   Y+ +      +    +        +++ +N     +     
Sbjct: 415 SLVEK--QPKESTISIPSIYLELKVKLENEYALHRS-------IVDHYNIP---KTFDSD 462

Query: 227 IFVKP------CSHIGGH--------KYAGNLIVYSPDS--EGKIMGHWYGYVTPDDVPA 270
             + P       SHIG H        +     +V+      E KI      +     +  
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 271 ILDQ------HIAKGE-IIERL 285
            L Q      +I   +   ERL
Sbjct: 523 TLQQLKFYKPYICDNDPKYERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 54/363 (14%), Positives = 104/363 (28%), Gaps = 113/363 (31%)

Query: 90  HVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLI 149
            VF      + +V   +  D   +PK   S L   + D  + S   V     GT     +
Sbjct: 23  SVFE-----DAFVDNFDCKDVQDMPK---SILSKEEIDHIIMSKDAV----SGTL---RL 67

Query: 150 FPEMIKYEGLKESDVDSFVDDVLVNGKPW-ASGVQE------GLTGSYVFVCSHGSRDKR 202
           F  ++  +   E  V  FV++VL     +  S ++        +T  Y+       RD+ 
Sbjct: 68  FWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-----QRDRL 119

Query: 203 CGVCGPALIEKFNAEIDSRG-----LKDQIF-VKPCSHIGGHKYAGN------LIVYSPD 250
                  +  K+N    SR      L+  +  ++P  ++      G+      L V    
Sbjct: 120 YN--DNQVFAKYNV---SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 251 SEGKIMG---HW--YGYV-TPDDVPAILDQHIAKGEIIERLWRGQLGQSAEVEKVDEKKL 304
                M     W       +P+ V           E++++L   Q+  +          +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVL----------EMLQKLLY-QIDPNWTSRSDHSSNI 223

Query: 305 PNGKEESKSKK---------------LED-GNTQVTKENVTGGCCQGASGFSC-----CK 343
                  +++                L +  N +             A   SC      +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN----------AFNLSCKILLTTR 273

Query: 344 DRS-SDVTGENKQIE----------TKGQGR--LSSWLGSFEQRDVLTAAAVVG---AVA 387
            +  +D                   T  + +  L  +L    Q   L    +      ++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLS 331

Query: 388 TIA 390
            IA
Sbjct: 332 IIA 334

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	400
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	99.7
2auv_A	85	Potential NAD-reducing hydrogenase subunit; thiore	99.36
3i9v_2	181	NADH-quinone oxidoreductase subunit 2; electron tr	99.23
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	99.13
2auv_A	85	Potential NAD-reducing hydrogenase subunit; thiore	98.4
3i9v_2	181	NADH-quinone oxidoreductase subunit 2; electron tr	97.86

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A

Probab=99.70  E-value=1.4e-17  Score=140.41  Aligned_cols=96  Identities=30%  Similarity=0.575  Sum_probs=85.2

Q ss_pred             CCcEEEEccCCCCC----CCccccc-HHHHHHHHHHHHhC-CCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEE
Q 015770          187 TGSYVFVCSHGSRD----KRCGVCG-PALIEKFNAEIDSR-GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWY  260 (400)
Q Consensus       187 ~~~~IlVCth~~RD----~rCg~~G-~~l~~aL~~~l~~~-gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wY  260 (400)
                      .+++|+||++.++|    .+|...| ..|+++|++++..+ |+.+.|.|..++|+ |.|..||+|+++|+      |+||
T Consensus         2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~Cl-G~C~~gP~v~V~P~------~~~y   74 (110)
T 1m2d_A            2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCM-NASMMGPVVVVYPD------GVWY   74 (110)
T ss_dssp             -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCC-SCGGGCSCEEEETT------TEEE
T ss_pred             CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCC-CccCCCCEEEEEeC------CEEE
Confidence            35799999998888    4899887 79999999999988 87777999999999 77888888888776      7999


Q ss_pred             eccCCCCHHHHHHHHHHCCccccceeccC
Q 015770          261 GYVTPDDVPAILDQHIAKGEIIERLWRGQ  289 (400)
Q Consensus       261 g~Vtp~dv~~Iv~~hl~~G~iv~~l~rG~  289 (400)
                      |+|||+++++||++|+.+|+++++|++..
T Consensus        75 ~~vt~e~v~~il~~~l~~g~~v~~l~~~~  103 (110)
T 1m2d_A           75 GQVKPEDVDEIVEKHLKGGEPVERLVISK  103 (110)
T ss_dssp             CSCCGGGHHHHHHHTTTTSCCCGGGEEEC
T ss_pred             ecCCHHHHHHHHHHHHHCCcChHHhcccC
Confidence            99999999999999999999999987654

>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}

Probab=99.36  E-value=9.1e-14  Score=111.54  Aligned_cols=78  Identities=19%  Similarity=0.270  Sum_probs=69.3

Q ss_pred             CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCC----CCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770          185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGL----KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW  259 (400)
Q Consensus       185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL----~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w  259 (400)
                      +..+.+|+||++.    +|...| ..|+++|+++|..+++    ++.+.|..++|+ |.|..||+|.+.        |.|
T Consensus         3 p~g~~~I~VC~g~----~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~Cl-G~C~~~P~v~V~--------~~~   69 (85)
T 2auv_A            3 PKGKYPISVCMGT----ACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCV-GGCALAPIVMVG--------EKV   69 (85)
T ss_dssp             SCCSBCEECCCCH----HHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSS-SSCTTSCCCEEG--------GGC
T ss_pred             CCCCEEEEECCCc----hHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCcc-CcCCCCCEEEEC--------CEE
Confidence            3456799999986    898887 7999999999998877    567999999999 899999999996        789


Q ss_pred             EeccCCCCHHHHHHHH
Q 015770          260 YGYVTPDDVPAILDQH  275 (400)
Q Consensus       260 Yg~Vtp~dv~~Iv~~h  275 (400)
                      |++|+|+++++||++|
T Consensus        70 y~~vt~e~v~~il~~~   85 (85)
T 2auv_A           70 YGNVTPGQVKKILAEY   85 (85)
T ss_dssp             CCCSSSSHHHHHHHHC
T ss_pred             ECCCCHHHHHHHHHhC
Confidence            9999999999999874

>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*

Probab=99.23  E-value=5.8e-12  Score=115.15  Aligned_cols=89  Identities=16%  Similarity=0.215  Sum_probs=77.5

Q ss_pred             CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhC----CCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccce-
Q 015770          185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR----GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH-  258 (400)
Q Consensus       185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~----gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~-  258 (400)
                      +..+.+|+||++.    +|...| ..|+++|+++|...    ..++.+.+..++|+ |.|..||+|.+.        +. 
T Consensus        74 P~gk~~I~VC~gt----~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~Cl-G~C~~gPvv~V~--------~~~  140 (181)
T 3i9v_2           74 PTGKYHLQVCATL----SCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECL-GSCHTAPVIQVN--------DEP  140 (181)
T ss_dssp             CCCSEEEEEECSH----HHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCC-SCGGGCSCEECS--------SSC
T ss_pred             CCCCEEEEECCCc----hhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCC-CccCCCCEEEEC--------CEE
Confidence            4457899999986    898887 69999999999743    24667999999999 899999999984        56 


Q ss_pred             EEeccCCCCHHHHHHHHHHCCccccceec
Q 015770          259 WYGYVTPDDVPAILDQHIAKGEIIERLWR  287 (400)
Q Consensus       259 wYg~Vtp~dv~~Iv~~hl~~G~iv~~l~r  287 (400)
                      ||++|||+++++||++ +.+|++++++..
T Consensus       141 ~y~~vt~e~v~~Il~~-l~~g~~ve~l~~  168 (181)
T 3i9v_2          141 YVECVTRARLEALLAG-LRAGKRLEEIEL  168 (181)
T ss_dssp             CBCCCCHHHHHHHHHH-HHTTCCGGGCCC
T ss_pred             EEcCCCHHHHHHHHHH-HHcCCChhheec
Confidence            9999999999999998 899999998853

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A

Probab=99.13  E-value=6.2e-11  Score=99.53  Aligned_cols=91  Identities=22%  Similarity=0.311  Sum_probs=74.5

Q ss_pred             CceEEEEEeeCC-CCccc-ccccccCCcHHHHHHHHHHhc-cCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcc
Q 015770           87 YGRHVFLCFKGP-EMWVA-RVEASDTDTLPKLLASALKTR-KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESD  163 (400)
Q Consensus        87 Y~rHVfVc~e~p-~~Wps-~~e~~~s~~L~~~L~~aLkar-~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~d  163 (400)
                      |++||+||.... +.+|+ .|...++..|.+.|.++++.+ +....+.+..+.|+|.|..+|.|+|+|+++||..+++++
T Consensus         2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P~~~~y~~vt~e~   81 (110)
T 1m2d_A            2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPED   81 (110)
T ss_dssp             -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCGGG
T ss_pred             CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEeCCEEEecCCHHH
Confidence            678999998743 34443 677767778889999888877 433346677799999999999999999999999999999


Q ss_pred             hhHHHHHHhhCCCC
Q 015770          164 VDSFVDDVLVNGKP  177 (400)
Q Consensus       164 Vd~~Vee~L~~G~~  177 (400)
                      +++|+++|+.+|.+
T Consensus        82 v~~il~~~l~~g~~   95 (110)
T 1m2d_A           82 VDEIVEKHLKGGEP   95 (110)
T ss_dssp             HHHHHHHTTTTSCC
T ss_pred             HHHHHHHHHHCCcC
Confidence            99999999988765

>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}

Probab=98.40  E-value=7.9e-08  Score=76.69  Aligned_cols=79  Identities=14%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             ccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCC
Q 015770           85 NPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLK  160 (400)
Q Consensus        85 ~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt  160 (400)
                      |.+++||+||...      .|...++..+.+.|.++++.+..    +..+.+.-+.|+|.|+.+|.|+|+  ++||..++
T Consensus         3 p~g~~~I~VC~g~------~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~--~~~y~~vt   74 (85)
T 2auv_A            3 PKGKYPISVCMGT------ACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVG--EKVYGNVT   74 (85)
T ss_dssp             SCCSBCEECCCCH------HHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEG--GGCCCCSS
T ss_pred             CCCCEEEEECCCc------hHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEEC--CEEECCCC
Confidence            5567899999742      45555667788888888876654    334556678999999999999997  68999999


Q ss_pred             CcchhHHHHHH
Q 015770          161 ESDVDSFVDDV  171 (400)
Q Consensus       161 ~~dVd~~Vee~  171 (400)
                      ++++++|+++|
T Consensus        75 ~e~v~~il~~~   85 (85)
T 2auv_A           75 PGQVKKILAEY   85 (85)
T ss_dssp             SSHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999864

>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*

Probab=97.86  E-value=1e-05  Score=73.75  Aligned_cols=84  Identities=15%  Similarity=0.145  Sum_probs=65.4

Q ss_pred             ccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhcc----CCCCceeeeeccCCCCCCCCeEEEecCcE-EeccC
Q 015770           85 NPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRK----DDMTVKSLMTVCGGGEGTDGDVLIFPEMI-KYEGL  159 (400)
Q Consensus        85 ~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~----~~~~vr~~ltic~g~cg~gp~VLVfPd~i-wY~~v  159 (400)
                      |..++||+||...      .|...+++.+.+.|.+.|+...    .+...++.-+.|+|.|+.+|.|.|  ++. ||..+
T Consensus        74 P~gk~~I~VC~gt------~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V--~~~~~y~~v  145 (181)
T 3i9v_2           74 PTGKYHLQVCATL------SCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQV--NDEPYVECV  145 (181)
T ss_dssp             CCCSEEEEEECSH------HHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEEC--SSSCCBCCC
T ss_pred             CCCCEEEEECCCc------hhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEE--CCEEEEcCC
Confidence            3446899999742      5666677788888988887542    233455667899999999999999  566 99999


Q ss_pred             CCcchhHHHHHHhhCCCC
Q 015770          160 KESDVDSFVDDVLVNGKP  177 (400)
Q Consensus       160 t~~dVd~~Vee~L~~G~~  177 (400)
                      +++++++|+++ +.+|++
T Consensus       146 t~e~v~~Il~~-l~~g~~  162 (181)
T 3i9v_2          146 TRARLEALLAG-LRAGKR  162 (181)
T ss_dssp             CHHHHHHHHHH-HHTTCC
T ss_pred             CHHHHHHHHHH-HHcCCC
Confidence            99999999998 777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	400
d1m2da_	101	c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin	7e-17
d1m2da_	101	c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin	3e-05

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

 Score = 73.5 bits (180), Expect = 7e-17
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 190 YVFVCSH----GSRDKRCGVCG-PALIEKFNAEIDSR-GLKDQIFVKPCSHIGGHKYAGN 243
           +VFVC      G     C   G   + + F  +I +   L     + P   +        
Sbjct: 3   HVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPV 62

Query: 244 LIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERL 285
           ++VY PD        WYG V P+DV  I+++H+  GE +ERL
Sbjct: 63  VVVY-PDG------VWYGQVKPEDVDEIVEKHLKGGEPVERL 97

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 89  RHVFLC----FKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTD 144
           +HVF+C      G          S  +     +       +  MT     T C       
Sbjct: 2   KHVFVCVQDRPPGHPQGSCAQRGSR-EVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMG 60

Query: 145 GDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKP 177
             V+++P+ + Y  +K  DVD  V+  L  G+P
Sbjct: 61  PVVVVYPDGVWYGQVKPEDVDEIVEKHLKGGEP 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	400
d1m2da_	101	Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolic	99.82
d1m2da_	101	Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolic	99.38
d2fug21	178	NADH-quinone oxidoreductase chain 2, NQO2 {Thermus	98.29
d2fug21	178	NADH-quinone oxidoreductase chain 2, NQO2 {Thermus	93.08

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.82  E-value=3.4e-21  Score=158.46  Aligned_cols=93  Identities=31%  Similarity=0.611  Sum_probs=83.0

Q ss_pred             cEEEEccCCC----CCCCccccc-HHHHHHHHHHHHh-CCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEec
Q 015770          189 SYVFVCSHGS----RDKRCGVCG-PALIEKFNAEIDS-RGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY  262 (400)
Q Consensus       189 ~~IlVCth~~----RD~rCg~~G-~~l~~aL~~~l~~-~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~  262 (400)
                      +|||||+|.+    ++.+|+..| .+++++|+++++. .+++++|.|.+++|+ |.|..||+|+++|+      |+||++
T Consensus         2 rHi~VC~~~r~~~~~~~~C~~~G~~~v~~~l~~~l~~~~~~~~~v~v~~tgCl-G~C~~gP~v~i~P~------~~~Y~~   74 (101)
T d1m2da_           2 KHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCM-NASMMGPVVVVYPD------GVWYGQ   74 (101)
T ss_dssp             EEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCC-SCGGGCSCEEEETT------TEEECS
T ss_pred             CEEEEeCCCCCCCCCCCcchhcCHHHHHHHHHHHhhhhcCCCCcEEEEEccCC-cccCCCceEEEcCC------ccEEec
Confidence            5899999965    456899987 7999999999974 466778999999999 88999999999987      899999


Q ss_pred             cCCCCHHHHHHHHHHCCccccceecc
Q 015770          263 VTPDDVPAILDQHIAKGEIIERLWRG  288 (400)
Q Consensus       263 Vtp~dv~~Iv~~hl~~G~iv~~l~rG  288 (400)
                      |||+++++||++||.+|+++++|+..
T Consensus        75 v~~e~v~~Iv~~hl~~g~~ve~ll~~  100 (101)
T d1m2da_          75 VKPEDVDEIVEKHLKGGEPVERLVIS  100 (101)
T ss_dssp             CCGGGHHHHHHHTTTTSCCCGGGEEE
T ss_pred             CCHHHHHHHHHHHHHCCcCchHhccc
Confidence            99999999999999999999998753

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.38  E-value=1.9e-13  Score=111.50  Aligned_cols=89  Identities=22%  Similarity=0.348  Sum_probs=73.2

Q ss_pred             eEEEEEeeCC-CCccc-ccccccCCcHHHHHHHHHHhc-cCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcchh
Q 015770           89 RHVFLCFKGP-EMWVA-RVEASDTDTLPKLLASALKTR-KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVD  165 (400)
Q Consensus        89 rHVfVc~e~p-~~Wps-~~e~~~s~~L~~~L~~aLkar-~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dVd  165 (400)
                      ||||||++.+ ++-++ +|...++..+.+.|.++++.. ..+..+++.-+.|+|.|..+|.|+|||+++||..+++++++
T Consensus         2 rHi~VC~~~r~~~~~~~~C~~~G~~~v~~~l~~~l~~~~~~~~~v~v~~tgClG~C~~gP~v~i~P~~~~Y~~v~~e~v~   81 (101)
T d1m2da_           2 KHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPEDVD   81 (101)
T ss_dssp             EEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCGGGHH
T ss_pred             CEEEEeCCCCCCCCCCCcchhcCHHHHHHHHHHHhhhhcCCCCcEEEEEccCCcccCCCceEEEcCCccEEecCCHHHHH
Confidence            7999998743 23332 566767778888888888754 33445778889999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCC
Q 015770          166 SFVDDVLVNGKP  177 (400)
Q Consensus       166 ~~Vee~L~~G~~  177 (400)
                      +|+++||.+|++
T Consensus        82 ~Iv~~hl~~g~~   93 (101)
T d1m2da_          82 EIVEKHLKGGEP   93 (101)
T ss_dssp             HHHHHTTTTSCC
T ss_pred             HHHHHHHHCCcC
Confidence            999999999876

>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: NQO2-like
domain: NADH-quinone oxidoreductase chain 2, NQO2
species: Thermus thermophilus [TaxId: 274]

Probab=98.29  E-value=3.3e-07  Score=81.30  Aligned_cols=95  Identities=17%  Similarity=0.239  Sum_probs=74.5

Q ss_pred             CCCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhC----CCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccce
Q 015770          184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR----GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH  258 (400)
Q Consensus       184 e~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~----gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~  258 (400)
                      ++..+..|.||++.    .|..+| ..|+++|+++|.-.    -.++.+.|..+.|+ |+|..+|+|.+.       +..
T Consensus        71 ~p~gk~~i~VC~~~----~C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle~v~Cl-G~C~~APa~~In-------~~~  138 (178)
T d2fug21          71 VPTGKYHLQVCATL----SCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECL-GSCHTAPVIQVN-------DEP  138 (178)
T ss_dssp             SCCCSEEEEEECSH----HHHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEEEESCC-SCTTSSSCEECS-------SSS
T ss_pred             cccccceeEecCch----hhhhccchhhHHHHHhhcccccccccCCCCEEEEEeecc-CccCCCCeEEEc-------CEE
Confidence            34557799999985    888887 79999999998632    12456999999999 899999999985       124


Q ss_pred             EEeccCCCCHHHHHHHHHHCCccccce-eccCCC
Q 015770          259 WYGYVTPDDVPAILDQHIAKGEIIERL-WRGQLG  291 (400)
Q Consensus       259 wYg~Vtp~dv~~Iv~~hl~~G~iv~~l-~rG~~~  291 (400)
                      ++++|||+.++.||++ |..|+.+++. ..|+.|
T Consensus       139 y~~~lt~e~~~~il~~-lr~~~~~~~~~~~~~~~  171 (178)
T d2fug21         139 YVECVTRARLEALLAG-LRAGKRLEEIELPGKCG  171 (178)
T ss_dssp             BCCSCCHHHHHHHHHH-HHTTCCGGGCCCSSCCC
T ss_pred             ecCCCCHHHHHHHHHH-HHcCCCCCCCCCCCCCC
Confidence            5689999999999987 7888876664 444444

>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: NQO2-like
domain: NADH-quinone oxidoreductase chain 2, NQO2
species: Thermus thermophilus [TaxId: 274]

Probab=93.08  E-value=0.047  Score=47.18  Aligned_cols=84  Identities=18%  Similarity=0.206  Sum_probs=56.6

Q ss_pred             cccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEe-cc
Q 015770           84 VNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKY-EG  158 (400)
Q Consensus        84 a~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY-~~  158 (400)
                      .+.-+.+|.||...      .|...++..|.+.|.+++.-...    +....+....|+|.|+.+|.+.|  ++..| ..
T Consensus        71 ~p~gk~~i~VC~~~------~C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle~v~ClG~C~~APa~~I--n~~~y~~~  142 (178)
T d2fug21          71 VPTGKYHLQVCATL------SCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQV--NDEPYVEC  142 (178)
T ss_dssp             SCCCSEEEEEECSH------HHHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEEEESCCSCTTSSSCEEC--SSSSBCCS
T ss_pred             cccccceeEecCch------hhhhccchhhHHHHHhhcccccccccCCCCEEEEEeeccCccCCCCeEEE--cCEEecCC
Confidence            34445678888532      45555666777788777754432    22334455799999999998877  44445 56


Q ss_pred             CCCcchhHHHHHHhhCCC
Q 015770          159 LKESDVDSFVDDVLVNGK  176 (400)
Q Consensus       159 vt~~dVd~~Vee~L~~G~  176 (400)
                      ++++.++.|++. |..|+
T Consensus       143 lt~e~~~~il~~-lr~~~  159 (178)
T d2fug21         143 VTRARLEALLAG-LRAGK  159 (178)
T ss_dssp             CCHHHHHHHHHH-HHTTC
T ss_pred             CCHHHHHHHHHH-HHcCC
Confidence            899999999987 44443